Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004246
(1221 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076968.1| hypothetical protein LOC540698 [Bos taurus]. 688 0.0
>ref|NP_001076968.1| hypothetical protein LOC540698 [Bos taurus].
Length = 441
Score = 688 bits (1776), Expect = 0.0
Identities = 329/385 (85%), Positives = 354/385 (91%)
Frame = +2
Query: 56 MAGPPKSLSGQDVGSFAYITIKDRIPQILTKAIDTLHRHKGEFFEKHGEKGMEAEKKAIS 235
MAGPP SLS +DVGSFAY+++KDR PQILTKAIDTLHRHK EFFEKHGEKG+EAEKKAIS
Sbjct: 1 MAGPPASLSARDVGSFAYLSVKDRSPQILTKAIDTLHRHKSEFFEKHGEKGLEAEKKAIS 60
Query: 236 LLSKLRNELQTDKPIVPLVEKFVDTDTWNQYLEYQQSLLNESDGKPRWFLSPWLFVECYM 415
LLSKLRNELQTDKPIVPLVEKFVDTD WNQYLEYQQSLLNESDGKPRWFLSPWLFVECYM
Sbjct: 61 LLSKLRNELQTDKPIVPLVEKFVDTDIWNQYLEYQQSLLNESDGKPRWFLSPWLFVECYM 120
Query: 416 YRRIHEAIIQSPPIDDFDVXXXXXXXXXXXXXXXIIALCTHLQELMKTIEDLDENQLKDE 595
YRRIHEAIIQSPPIDDFD+ IIALCTHLQEL KTIEDLDENQLK+E
Sbjct: 121 YRRIHEAIIQSPPIDDFDIFKEFKDQNFFESQESIIALCTHLQELRKTIEDLDENQLKNE 180
Query: 596 FFKVLQISLWGNKCDLSLSGGETSFQKTNIVNSLEDLKPFILVNNMEQLWSLLSNCKKTR 775
FFKVLQISLWGNKCDLSLSGGE QKTNI+NSLEDLKPFILVN+M++LWSLLSNCKKTR
Sbjct: 181 FFKVLQISLWGNKCDLSLSGGEHISQKTNIMNSLEDLKPFILVNDMDRLWSLLSNCKKTR 240
Query: 776 EKASVTRVIIVLDNSGFELVTDLVLADFLLSSKLATEIHFYGKMIPWFVSDTTVRDFNWL 955
EK SVTRV IVLDNSGFEL+TDLVLADFLLSSKLAT+IHFYGK IPWFVSDTT+ DFNW+
Sbjct: 241 EKESVTRVDIVLDNSGFELITDLVLADFLLSSKLATKIHFYGKTIPWFVSDTTLHDFNWI 300
Query: 956 LKQLKHSNHKWMSRCGVDWENHIKTGRWVYLDHMFWTLPHEFSAMSQVAPDLYAALQKAH 1135
+KQLKHSN+KW+S+CGVDWE+H+KTGRWVYLDH+FWTLPHEFSAMSQVAPDL+AALQKAH
Sbjct: 301 IKQLKHSNNKWVSQCGVDWEDHVKTGRWVYLDHIFWTLPHEFSAMSQVAPDLHAALQKAH 360
Query: 1136 LILFKGDLNYRKLTGDKKWEFTFHF 1210
LI FKGDLNYRKLTGD++WEFT F
Sbjct: 361 LIFFKGDLNYRKLTGDRRWEFTVPF 385
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,589,613
Number of extensions: 937229
Number of successful extensions: 2066
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2064
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,207,134
Effective search space: 4290554468
Effective search space used: 4290554468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004246
(1221 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854799.1| PREDICTED: similar to F31D4.2 [Canis familiaris]. 676 0.0
>ref|XP_854799.1| PREDICTED: similar to F31D4.2 [Canis familiaris].
Length = 441
Score = 676 bits (1743), Expect = 0.0
Identities = 322/385 (83%), Positives = 347/385 (90%)
Frame = +2
Query: 56 MAGPPKSLSGQDVGSFAYITIKDRIPQILTKAIDTLHRHKGEFFEKHGEKGMEAEKKAIS 235
MAG P SLSGQDVGSFAY+TIKDRIPQILT+AIDTLHRHK EFFEKHGEKG EAEKKAIS
Sbjct: 1 MAGSPASLSGQDVGSFAYLTIKDRIPQILTRAIDTLHRHKSEFFEKHGEKGTEAEKKAIS 60
Query: 236 LLSKLRNELQTDKPIVPLVEKFVDTDTWNQYLEYQQSLLNESDGKPRWFLSPWLFVECYM 415
LLSKLRNELQTDKPI+P VEKFVDTD WNQYLEYQQSLLNE+DGKPRWF SPWLFVECYM
Sbjct: 61 LLSKLRNELQTDKPIIPFVEKFVDTDIWNQYLEYQQSLLNENDGKPRWFYSPWLFVECYM 120
Query: 416 YRRIHEAIIQSPPIDDFDVXXXXXXXXXXXXXXXIIALCTHLQELMKTIEDLDENQLKDE 595
YRRIHEAIIQSPPIDDFDV I+ALCTHLQEL+ I+DLDENQLKDE
Sbjct: 121 YRRIHEAIIQSPPIDDFDVFKESKEQNFFESQESIVALCTHLQELVTAIKDLDENQLKDE 180
Query: 596 FFKVLQISLWGNKCDLSLSGGETSFQKTNIVNSLEDLKPFILVNNMEQLWSLLSNCKKTR 775
FF++LQISLWGNKCDLSLSGGETS QK NI+NSLE+LKP ILVN+ME+LWSLL+NCKKTR
Sbjct: 181 FFRLLQISLWGNKCDLSLSGGETSSQKINIINSLEELKPLILVNDMERLWSLLNNCKKTR 240
Query: 776 EKASVTRVIIVLDNSGFELVTDLVLADFLLSSKLATEIHFYGKMIPWFVSDTTVRDFNWL 955
EKAS+TRV IVLDNSGFELVTDLVLADFLLSS+LATEIHFYGK IPWFVSDTT+ DFNWL
Sbjct: 241 EKASITRVDIVLDNSGFELVTDLVLADFLLSSQLATEIHFYGKTIPWFVSDTTIHDFNWL 300
Query: 956 LKQLKHSNHKWMSRCGVDWENHIKTGRWVYLDHMFWTLPHEFSAMSQVAPDLYAALQKAH 1135
++Q+K SNHKWMS+CGVDWEN+IK G+WVY DH+FWTLPHEF MSQVAPDLYA LQKAH
Sbjct: 301 IEQVKSSNHKWMSKCGVDWENYIKMGKWVYHDHIFWTLPHEFCVMSQVAPDLYAELQKAH 360
Query: 1136 LILFKGDLNYRKLTGDKKWEFTFHF 1210
LILFKGDLNYRKLTGD+KWEFT F
Sbjct: 361 LILFKGDLNYRKLTGDRKWEFTIPF 385
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,408,653
Number of extensions: 966593
Number of successful extensions: 2341
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2341
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 302
Effective length of database: 15,374,224
Effective search space: 4643015648
Effective search space used: 4643015648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004246
(1221 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078849.1| hypothetical protein LOC79624 [Homo sapiens]. 662 0.0
>ref|NP_078849.1| hypothetical protein LOC79624 [Homo sapiens].
Length = 441
Score = 662 bits (1708), Expect = 0.0
Identities = 315/385 (81%), Positives = 343/385 (89%)
Frame = +2
Query: 56 MAGPPKSLSGQDVGSFAYITIKDRIPQILTKAIDTLHRHKGEFFEKHGEKGMEAEKKAIS 235
MA P SLSGQDVGSFAY+TIKDRIPQILTK IDTLHRHK EFFEKHGE+G+EAEKKAIS
Sbjct: 1 MAVVPASLSGQDVGSFAYLTIKDRIPQILTKVIDTLHRHKSEFFEKHGEEGVEAEKKAIS 60
Query: 236 LLSKLRNELQTDKPIVPLVEKFVDTDTWNQYLEYQQSLLNESDGKPRWFLSPWLFVECYM 415
LLSKLRNELQTDKP +PLVEKFVDTD WNQYLEYQQSLLNESDGK RWF SPWL VECYM
Sbjct: 61 LLSKLRNELQTDKPFIPLVEKFVDTDIWNQYLEYQQSLLNESDGKSRWFYSPWLLVECYM 120
Query: 416 YRRIHEAIIQSPPIDDFDVXXXXXXXXXXXXXXXIIALCTHLQELMKTIEDLDENQLKDE 595
YRRIHEAIIQSPPID FDV IIALCTHLQ+L++TIEDLDENQLKDE
Sbjct: 121 YRRIHEAIIQSPPIDYFDVFKESKEQNFYGSQESIIALCTHLQQLIRTIEDLDENQLKDE 180
Query: 596 FFKVLQISLWGNKCDLSLSGGETSFQKTNIVNSLEDLKPFILVNNMEQLWSLLSNCKKTR 775
FFK+LQISLWGNKCDLSLSGGE+S Q TN++NSLEDLKPFIL+N+ME LWSLLSNCKKTR
Sbjct: 181 FFKLLQISLWGNKCDLSLSGGESSSQNTNVLNSLEDLKPFILLNDMEHLWSLLSNCKKTR 240
Query: 776 EKASVTRVIIVLDNSGFELVTDLVLADFLLSSKLATEIHFYGKMIPWFVSDTTVRDFNWL 955
EKAS TRV IVLDNSGFELVTDL+LADFLLSS+LATE+HFYGK IPWFVSDTT+ DFNWL
Sbjct: 241 EKASATRVYIVLDNSGFELVTDLILADFLLSSELATEVHFYGKTIPWFVSDTTIHDFNWL 300
Query: 956 LKQLKHSNHKWMSRCGVDWENHIKTGRWVYLDHMFWTLPHEFSAMSQVAPDLYAALQKAH 1135
++Q+KHSNHKWMS+CG DWE +IK G+WVY +H+FWTLPHE+ AM QVAPDLYA LQKAH
Sbjct: 301 IEQVKHSNHKWMSKCGADWEEYIKMGKWVYHNHIFWTLPHEYCAMPQVAPDLYAELQKAH 360
Query: 1136 LILFKGDLNYRKLTGDKKWEFTFHF 1210
LILFKGDLNYRKLTGD+KWEF+ F
Sbjct: 361 LILFKGDLNYRKLTGDRKWEFSVPF 385
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,851,062
Number of extensions: 965043
Number of successful extensions: 2299
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2299
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,835,944
Effective search space: 4480455088
Effective search space used: 4480455088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004246
(1221 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077223.2| hypothetical protein LOC73419 [Mus musculus]. 561 e-160
>ref|NP_077223.2| hypothetical protein LOC73419 [Mus musculus].
Length = 439
Score = 561 bits (1445), Expect = e-160
Identities = 275/385 (71%), Positives = 309/385 (80%)
Frame = +2
Query: 56 MAGPPKSLSGQDVGSFAYITIKDRIPQILTKAIDTLHRHKGEFFEKHGEKGMEAEKKAIS 235
MA P LS +D GSFAY+TIKDR PQILTK IDTLHRHK EFFEKHGE+G+EAEKKAIS
Sbjct: 1 MAESPAFLSAKDEGSFAYLTIKDRTPQILTKVIDTLHRHKSEFFEKHGEEGIEAEKKAIS 60
Query: 236 LLSKLRNELQTDKPIVPLVEKFVDTDTWNQYLEYQQSLLNESDGKPRWFLSPWLFVECYM 415
LLSKLRNELQTDKPI PLV+K VDT WNQYLEYQ+SLLNE DG+PRWF SPWLFVECYM
Sbjct: 61 LLSKLRNELQTDKPITPLVDKCVDTHIWNQYLEYQRSLLNEGDGEPRWFFSPWLFVECYM 120
Query: 416 YRRIHEAIIQSPPIDDFDVXXXXXXXXXXXXXXXIIALCTHLQELMKTIEDLDENQLKDE 595
YRRIHEAI+QSPPI DFDV I ALC+HL +L K ++ L E Q++DE
Sbjct: 121 YRRIHEAIMQSPPIHDFDVFKESKEENFFESQGSIDALCSHLLQL-KPVKGLREEQIQDE 179
Query: 596 FFKVLQISLWGNKCDLSLSGGETSFQKTNIVNSLEDLKPFILVNNMEQLWSLLSNCKKTR 775
FFK+LQISLWGNKCDLSLSGGE+S QK NI+N L+DLKPFIL+N+ E LW+LLS KKT
Sbjct: 180 FFKLLQISLWGNKCDLSLSGGESSSQKANIINCLQDLKPFILINDTESLWALLSKLKKTV 239
Query: 776 EKASVTRVIIVLDNSGFELVTDLVLADFLLSSKLATEIHFYGKMIPWFVSDTTVRDFNWL 955
E V RV IVLDNSGFEL+TDLVLADFL SS+LATEIHF+GK IPWFVSD T DFNW+
Sbjct: 240 E-TPVVRVDIVLDNSGFELITDLVLADFLFSSELATEIHFHGKSIPWFVSDVTEHDFNWI 298
Query: 956 LKQLKHSNHKWMSRCGVDWENHIKTGRWVYLDHMFWTLPHEFSAMSQVAPDLYAALQKAH 1135
++ +K SN + MS CG WE + + GRW Y DH FWTLPH + M QVAPDLYA LQKAH
Sbjct: 299 VEHMKSSNLESMSTCGACWEAYARMGRWAYHDHAFWTLPHPYCVMPQVAPDLYAELQKAH 358
Query: 1136 LILFKGDLNYRKLTGDKKWEFTFHF 1210
LILFKGDLNYRKL GD+KW+FTF F
Sbjct: 359 LILFKGDLNYRKLMGDRKWKFTFPF 383
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,898,626
Number of extensions: 825201
Number of successful extensions: 1957
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1954
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 303
Effective length of database: 12,493,815
Effective search space: 3785625945
Effective search space used: 3785625945
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004246
(1221 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230566.1| hypothetical protein LOC100157036 [Sus scrof... 753 0.0
>ref|NP_001230566.1| hypothetical protein LOC100157036 [Sus scrofa].
Length = 443
Score = 753 bits (1944), Expect = 0.0
Identities = 368/387 (95%), Positives = 369/387 (95%)
Frame = +2
Query: 50 MVMAGPPKSLSGQDVGSFAYITIKDRIPQILTKAIDTLHRHKGEFFEKHGEKGMEAEKKA 229
MVMAGPPKSLSGQDVGSFAYITIKDRIPQILTKAIDTLHRHK EFFEKHGEKGMEAEKKA
Sbjct: 1 MVMAGPPKSLSGQDVGSFAYITIKDRIPQILTKAIDTLHRHKSEFFEKHGEKGMEAEKKA 60
Query: 230 ISLLSKLRNELQTDKPIVPLVEKFVDTDTWNQYLEYQQSLLNESDGKPRWFLSPWLFVEC 409
ISLLSKLRNELQTDKPIVPLVEKFVDTDTWNQYLEYQQSLLNESDGKPRWFLSPWLFVEC
Sbjct: 61 ISLLSKLRNELQTDKPIVPLVEKFVDTDTWNQYLEYQQSLLNESDGKPRWFLSPWLFVEC 120
Query: 410 YMYRRIHEAIIQSPPIDDFDVXXXXXXXXXXXXXXXIIALCTHLQELMKTIEDLDENQLK 589
YMYRRIHEAIIQSPPIDDFDV IIALCTHLQELMKTIEDLDENQLK
Sbjct: 121 YMYRRIHEAIIQSPPIDDFDVFKESKEQSFFESQESIIALCTHLQELMKTIEDLDENQLK 180
Query: 590 DEFFKVLQISLWGNKCDLSLSGGETSFQKTNIVNSLEDLKPFILVNNMEQLWSLLSNCKK 769
DEFFKVLQISLWGNKCDLSLSGGETSFQKTNIVNSLEDLKPFILVNNMEQLWSLLSNCKK
Sbjct: 181 DEFFKVLQISLWGNKCDLSLSGGETSFQKTNIVNSLEDLKPFILVNNMEQLWSLLSNCKK 240
Query: 770 TREKASVTRVIIVLDNSGFELVTDLVLADFLLSSKLATEIHFYGKMIPWFVSDTTVRDFN 949
TREKASVTRVIIVLDNSGFELVTDLVLADFLLSSKLATEIHFYGKMIPWFVSDTTVRDFN
Sbjct: 241 TREKASVTRVIIVLDNSGFELVTDLVLADFLLSSKLATEIHFYGKMIPWFVSDTTVRDFN 300
Query: 950 WLLKQLKHSNHKWMSRCGVDWENHIKTGRWVYLDHMFWTLPHEFSAMSQVAPDLYAALQK 1129
WLLKQLKHSNHKWMSRCGVDWENHIKTGRWVYLDHMFWTLPHEFSAMSQVAPDLYAALQK
Sbjct: 301 WLLKQLKHSNHKWMSRCGVDWENHIKTGRWVYLDHMFWTLPHEFSAMSQVAPDLYAALQK 360
Query: 1130 AHLILFKGDLNYRKLTGDKKWEFTFHF 1210
AHLILFKGDLNYRKLTGD+KWEFT F
Sbjct: 361 AHLILFKGDLNYRKLTGDRKWEFTIPF 387
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,983,378
Number of extensions: 593879
Number of successful extensions: 1340
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1339
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,829,335
Effective search space: 2701776510
Effective search space used: 2701776510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004246
(1221 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1185 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1185 bits (598), Expect = 0.0
Identities = 611/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Minus
Query: 609 ttcagatatcactgtggggaaataagtgtgatctctctctatcaggcggggaaactagct 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17192065 ttcagatatcactgtggggaaataagtgtgatctctctctatcaggcggggaaactagct 17192006
Query: 669 ttcagaagaccaatatagtaaattctttggaagacctaaaacctttcattttagtgaata 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17192005 ttcagaagaccaatatagtaaattctttggaagacctaaaacctttcattttagtgaata 17191946
Query: 729 acatggaacagctttggtcgttgctcagcaattgcaagaaaacaagagaaaaagcatctg 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17191945 acatggaacagctttggtcgttgctcagcaattgcaagaaaacaagagaaaaagcatctg 17191886
Query: 789 ttactcgagtgattattgttctggacaattctgggtttgaacttgttacagatttagtat 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17191885 ttactcgagtgattattgttctggacaattctgggtttgaacttgttacagatttagtat 17191826
Query: 849 tagctgacttcttgttgtcctctaaactggctactgagatccatttttacggaaaaatga 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17191825 tagctgacttcttgttgtcctctaaactggctactgagatccatttttacggaaaaatga 17191766
Query: 909 ttccatggtttgtttctgatactactgtgcgtgattttaactggttactcaaacagctga 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17191765 ttccatggtttgtttctgatactactgtgcgtgattttaactggttactcaaacagctga 17191706
Query: 969 aacattctaatcataagtggatgtccaggtgtggggttgactgggaaaaccatataaaaa 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17191705 aacattctaatcataagtggatgtccaggtgtggggttgactgggaaaaccatataaaaa 17191646
Query: 1029 caggcaggtgggtttacctggatcatatgttttggactctacctcatgaattcagcgcaa 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17191645 caggcaggtgggtttacctggatcatatgttttggactctacctcatgaattcagcgcaa 17191586
Query: 1089 tgtctcaagttgctcctgacctatatgccgcactacagaaggcacatttaattttattta 1148
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 17191585 tgtctcaagttgctcctgacttatatgccgcactacagaaggcacatttaattttattta 17191526
Query: 1149 agggggacctgaattacaggaagttgacaggtgacaaaaagtgggagttta-cattccat 1207
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 17191525 agggggacctgaattacaggaagttgacaggtgacagaaagtgggagtttaccattccat 17191466
Query: 1208 ttcatgaggctttg 1221
||||||||||||||
Sbjct: 17191465 ttcatgaggctttg 17191452
Score = 490 bits (247), Expect = e-135
Identities = 247/247 (100%)
Strand = Plus / Minus
Query: 201 agaaaggcatggaggctgaaaagaaagcaatttctcttctgtctaaattacggaatgaat 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17202928 agaaaggcatggaggctgaaaagaaagcaatttctcttctgtctaaattacggaatgaat 17202869
Query: 261 tgcaaacagataaaccaatagttcctttagttgaaaagttcgttgatactgacacatgga 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17202868 tgcaaacagataaaccaatagttcctttagttgaaaagttcgttgatactgacacatgga 17202809
Query: 321 atcagtacctagaatatcaacagagccttttaaatgaaagtgatgggaaaccaaggtggt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17202808 atcagtacctagaatatcaacagagccttttaaatgaaagtgatgggaaaccaaggtggt 17202749
Query: 381 ttctttccccgtggttgtttgtggaatgctacatgtatcggaggattcatgaagcaatta 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17202748 ttctttccccgtggttgtttgtggaatgctacatgtatcggaggattcatgaagcaatta 17202689
Query: 441 tccaaag 447
|||||||
Sbjct: 17202688 tccaaag 17202682
Score = 490 bits (247), Expect = e-135
Identities = 247/247 (100%)
Strand = Plus / Minus
Query: 201 agaaaggcatggaggctgaaaagaaagcaatttctcttctgtctaaattacggaatgaat 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17214913 agaaaggcatggaggctgaaaagaaagcaatttctcttctgtctaaattacggaatgaat 17214854
Query: 261 tgcaaacagataaaccaatagttcctttagttgaaaagttcgttgatactgacacatgga 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17214853 tgcaaacagataaaccaatagttcctttagttgaaaagttcgttgatactgacacatgga 17214794
Query: 321 atcagtacctagaatatcaacagagccttttaaatgaaagtgatgggaaaccaaggtggt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17214793 atcagtacctagaatatcaacagagccttttaaatgaaagtgatgggaaaccaaggtggt 17214734
Query: 381 ttctttccccgtggttgtttgtggaatgctacatgtatcggaggattcatgaagcaatta 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17214733 ttctttccccgtggttgtttgtggaatgctacatgtatcggaggattcatgaagcaatta 17214674
Query: 441 tccaaag 447
|||||||
Sbjct: 17214673 tccaaag 17214667
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 446 agtccgccaatcgatgactttgatgtatttaaagaatcaaaagagcaaagtttctttgag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17197929 agtccgccaatcgatgactttgatgtatttaaagaatcaaaagagcaaagtttctttgag 17197870
Query: 506 tcgcaagaatctatcattgctttatgtactcacctgcaagagttgatgaaaactattgaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17197869 tcgcaagaatctatcattgctttatgtactcacctgcaagagttgatgaaaactattgaa 17197810
Query: 566 gacctagatgaaaatcagttgaaagatgagttttttaaagttcttcag 613
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17197809 gacctagatgaaaatcagttgaaagatgagttttttaaagttcttcag 17197762
Score = 204 bits (103), Expect = 8e-50
Identities = 106/107 (99%)
Strand = Plus / Minus
Query: 96 gatcatttgcctatattacaattaaagatagaataccacagatcttaaccaaggctattg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17203767 gatcatttgcctatattacaattaaagatagaataccacagatcttaaccaaggctattg 17203708
Query: 156 atacactgcatcgacacaaaggtgaatttttcgagaaacatggagag 202
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 17203707 atacactgcatcgacacaaaagtgaatttttcgagaaacatggagag 17203661
Score = 204 bits (103), Expect = 8e-50
Identities = 106/107 (99%)
Strand = Plus / Minus
Query: 96 gatcatttgcctatattacaattaaagatagaataccacagatcttaaccaaggctattg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17215752 gatcatttgcctatattacaattaaagatagaataccacagatcttaaccaaggctattg 17215693
Query: 156 atacactgcatcgacacaaaggtgaatttttcgagaaacatggagag 202
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 17215692 atacactgcatcgacacaaaagtgaatttttcgagaaacatggagag 17215646
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 4 ctttcctgcgtctggtgaaacccgagagttggcgcggggaacgcggatggtgatggcggg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17206668 ctttcctgcgtctggtgaaacccgagagttggcgcggggaacgcggatggtgatggcggg 17206609
Query: 64 gcctccgaagtctctctcgggacaggacgtagg 96
|||||||||||||||||||||||||||||||||
Sbjct: 17206608 gcctccgaagtctctctcgggacaggacgtagg 17206576
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 4 ctttcctgcgtctggtgaaacccgagagttggcgcggggaacgcggatggtgatggcggg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17218653 ctttcctgcgtctggtgaaacccgagagttggcgcggggaacgcggatggtgatggcggg 17218594
Query: 64 gcctccgaagtctctctcgggacaggacgtagg 96
|||||||||||||||||||||||||||||||||
Sbjct: 17218593 gcctccgaagtctctctcgggacaggacgtagg 17218561
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,157,948
Number of extensions: 274
Number of successful extensions: 274
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 8
Length of query: 1221
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1200
Effective length of database: 2,808,413,156
Effective search space: 3370095787200
Effective search space used: 3370095787200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)