Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004259
(1021 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039651.1| claudin-15 [Bos taurus]. 327 8e-90
Alignment gi|NP_001014857.1| claudin-10 isoform a [Bos taurus]. 157 1e-38
Alignment gi|NP_001099079.1| claudin-10 isoform b [Bos taurus]. 120 2e-27
Alignment gi|NP_001094554.1| claudin-19 [Bos taurus]. 119 3e-27
Alignment gi|NP_001035609.1| claudin-7 [Bos taurus]. 117 2e-26
Alignment gi|NP_001014413.1| claudin-4 [Bos taurus]. 103 2e-22
Alignment gi|NP_001069928.1| claudin-5 [Bos taurus]. 99 6e-21
Alignment gi|XP_002685199.1| PREDICTED: claudin 14-like [Bos taurus]. 98 1e-20
Alignment gi|XP_001251155.1| PREDICTED: claudin 14 [Bos taurus]. 98 1e-20
Alignment gi|NP_001001854.1| claudin-1 [Bos taurus]. 97 2e-20
>ref|NP_001039651.1| claudin-15 [Bos taurus].
Length = 235
Score = 327 bits (839), Expect = 8e-90
Identities = 164/231 (70%), Positives = 178/231 (77%), Gaps = 1/231 (0%)
Frame = +3
Query: 207 MSVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVY 386
M VAVEIFGFF+ TL HSSWRVSTVHGNVITTNTIFENLWYSCATDS+GV+
Sbjct: 1 MLVAVEIFGFFLTAVGLLMLGVTLAHSSWRVSTVHGNVITTNTIFENLWYSCATDSMGVH 60
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
NCWEFPSMLALSGYIQACRALMITAI RCTNIGGLELSRKTKLAATA
Sbjct: 61 NCWEFPSMLALSGYIQACRALMITAILLGFLGLFLGMVGLRCTNIGGLELSRKTKLAATA 120
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWTAXXXXXXXXXXXX 746
GALHILAG+CGMVA+SWYAFNITRDFF+PLY GTKYELGPALYLGW+A
Sbjct: 121 GALHILAGICGMVAVSWYAFNITRDFFNPLYAGTKYELGPALYLGWSACLLAILGGICLF 180
Query: 747 XXXXXAQDDDPAANVRVPYKAP-MPASSLTARLPAVASDEDGDSSFASMGK 896
++D DPA V++PYKAP +PA+SL ARLPA ASDE+GDSSF GK
Sbjct: 181 SNCCCSRDRDPATGVQLPYKAPVIPAASLAARLPAAASDEEGDSSFGKYGK 231
>ref|NP_001014857.1| claudin-10 isoform a [Bos taurus].
Length = 231
Score = 157 bits (397), Expect = 1e-38
Identities = 80/165 (48%), Positives = 98/165 (59%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYN 389
S A EI F + TLP W+VST+ G VITT T + NLW +C TDS GV N
Sbjct: 3 STASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKTCVTDSTGVSN 62
Query: 390 CWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAG 569
C +FPSMLAL GYIQACR LMI A+ +CT +GG + K K+A AG
Sbjct: 63 CKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALIGMKCTKVGGSD-KAKAKIACLAG 121
Query: 570 ALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGW 704
+ IL+G+C M S YA IT +FFDPL+ KYELG AL++GW
Sbjct: 122 IVFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGW 166
>ref|NP_001099079.1| claudin-10 isoform b [Bos taurus].
Length = 229
Score = 120 bits (301), Expect = 2e-27
Identities = 57/140 (40%), Positives = 84/140 (60%)
Frame = +3
Query: 285 SSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYNCWEFPSMLALSGYIQACRALMITAI 464
+ W+V+T +VIT +++ LW +CA ++LG ++C ++ + GYIQACR LMI A+
Sbjct: 26 NEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVEGYIQACRGLMIAAV 85
Query: 465 XXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGALHILAGVCGMVAISWYAFNITRDF 644
+CT +GG + K K+A AG + IL+G+C M S YA IT +F
Sbjct: 86 SLGFFGSIFALIGMKCTKVGGSD-KAKAKIACLAGIVFILSGLCSMTGCSLYANKITTEF 144
Query: 645 FDPLYPGTKYELGPALYLGW 704
FDPL+ KYELG AL++GW
Sbjct: 145 FDPLFVEQKYELGAALFIGW 164
>ref|NP_001094554.1| claudin-19 [Bos taurus].
Length = 211
Score = 119 bits (299), Expect = 3e-27
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGN-VITTNTIFENLWYSCATDSLGVYNCW 395
+++ G+F+ + W+ S+ G+ +IT ++E LW SCA+ S G C
Sbjct: 6 LQLLGYFLAMGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LAL G+IQ+ RALM+ A+ +CT +G K ++A GAL
Sbjct: 66 LYDSLLALEGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGAL 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
+LAG+C + A+SWYA +T++FF+P P +YE GPAL++GW A
Sbjct: 126 FLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWAA 171
>ref|NP_001035609.1| claudin-7 [Bos taurus].
Length = 211
Score = 117 bits (292), Expect = 2e-26
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVYNCW 395
+++ GF M W++S+ G N+IT +++ LW C T S G+ +C
Sbjct: 6 LQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+L+L +QA RALM+ ++ +CTN GG + +K ++A T G +
Sbjct: 66 MYDSVLSLPAALQATRALMVVSLVLGFLATFVATMGMKCTNCGGDDKVKKARIAMTGGII 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGW 704
ILAG+ ++A SWY I DF++PL P KYE GPA+++GW
Sbjct: 126 FILAGLAALIACSWYGHQIVSDFYNPLVPMNVKYEFGPAIFIGW 169
>ref|NP_001014413.1| claudin-4 [Bos taurus].
Length = 209
Score = 103 bits (257), Expect = 2e-22
Identities = 59/169 (34%), Positives = 88/169 (52%), Gaps = 2/169 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVY 386
S+ +++ G + + WRV+ G N++T+ TI+E LW +C S G
Sbjct: 3 SMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQM 62
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
C + S+LAL +QA RAL++ I +CTN E S K K+ A
Sbjct: 63 QCKVYDSLLALPQDLQAARALIVICIILAVFGVLLSVVGGKCTNCVDDE-SSKAKIMIVA 121
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLY-PGTKYELGPALYLGWTA 710
G + +LAG+ MV +SW A N+ RDF++PL G K E+G +LY+GW A
Sbjct: 122 GVVFLLAGLLVMVPVSWTANNVIRDFYNPLVASGQKREMGASLYVGWAA 170
>ref|NP_001069928.1| claudin-5 [Bos taurus].
Length = 218
Score = 99.0 bits (245), Expect = 6e-21
Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 2/169 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVST-VHGNVITTNTIFENLWYSCATDSLGVY 386
S A+EI G + W+V+ + N++T T ++ LW SC S G
Sbjct: 3 SAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHM 62
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
C + S+LALS +QA RAL + A+ +CT K ++A T
Sbjct: 63 QCKVYDSVLALSPEVQAARALTVGAVLLALVALFVTLAGAQCTTCVA-PGPAKARVALTG 121
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
GAL+ L G+ +V + W+A + R+F+DP P KYELG ALY+GW A
Sbjct: 122 GALYALCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAA 170
>ref|XP_002685199.1| PREDICTED: claudin 14-like [Bos taurus].
Length = 237
Score = 98.2 bits (243), Expect = 1e-20
Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXT--LPHSSWR-VSTVHGNVITTNTIFENLWYSCATDSLG 380
+ AV++ GF + T LPH WR + V N++T + + LW C S G
Sbjct: 3 NTAVQLLGFLLCFLGLVGTLITTVLPH--WRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 381 VYNCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAA 560
+Y C + S+LAL +QA RALM+ + +CT KT AA
Sbjct: 61 IYQCQIYRSLLALPRDLQAARALMVVSCLLSGAACASAVVGMQCTRC-AKGTPAKTACAA 119
Query: 561 TAGALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
GAL +LAG+ +VA+SW ++ ++F++PL P G K+E+G ALYLG+ A
Sbjct: 120 VGGALFLLAGLLCLVAVSWTTHDVVQNFYNPLLPSGMKFEIGQALYLGFIA 170
>ref|XP_001251155.1| PREDICTED: claudin 14 [Bos taurus].
Length = 237
Score = 98.2 bits (243), Expect = 1e-20
Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXT--LPHSSWR-VSTVHGNVITTNTIFENLWYSCATDSLG 380
+ AV++ GF + T LPH WR + V N++T + + LW C S G
Sbjct: 3 NTAVQLLGFLLCFLGLVGTLITTVLPH--WRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 381 VYNCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAA 560
+Y C + S+LAL +QA RALM+ + +CT KT AA
Sbjct: 61 IYQCQIYRSLLALPRDLQAARALMVVSCLLSGAACASAVVGMQCTRC-AKGTPAKTACAA 119
Query: 561 TAGALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
GAL +LAG+ +VA+SW ++ ++F++PL P G K+E+G ALYLG+ A
Sbjct: 120 VGGALFLLAGLLCLVAVSWTTHDVVQNFYNPLLPSGMKFEIGQALYLGFIA 170
>ref|NP_001001854.1| claudin-1 [Bos taurus].
Length = 211
Score = 97.4 bits (241), Expect = 2e-20
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 2/169 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRV-STVHGNVITTNTIFENLWYSCATDSLGVY 386
+ +++ GF + + W+V S N++T I+E LW SC + S G
Sbjct: 3 NAGLQLLGFILAFLGWIGSIVSTALPQWKVYSYASDNIVTAQAIYEGLWMSCVSQSTGQI 62
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
C F S+L L+ +QA RALM+ I +C + ++K ++A
Sbjct: 63 QCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATVGMKCMKCMEDDEAQKMRMAVFG 122
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
G + +++G+ +VA +WY I ++F+DP+ P +YE G AL++GW A
Sbjct: 123 GVIFLISGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFIGWAA 171
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,809,312
Number of extensions: 1037006
Number of successful extensions: 5654
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 5560
Number of HSP's successfully gapped: 29
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004259
(1021 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850281.1| PREDICTED: similar to Claudin-15 [Canis familia... 181 1e-45
Alignment gi|XP_534163.1| PREDICTED: similar to claudin 10 isoform b isof... 159 5e-39
Alignment gi|XP_858900.1| PREDICTED: similar to claudin 10 isoform b isof... 139 4e-33
Alignment gi|XP_858821.1| PREDICTED: similar to claudin 10 isoform a isof... 122 7e-28
Alignment gi|XP_848612.1| PREDICTED: similar to claudin 19 (predicted) [C... 115 5e-26
Alignment gi|XP_546584.2| PREDICTED: similar to Claudin-7 (CLDN-7) [Canis... 110 2e-24
Alignment gi|XP_546920.2| PREDICTED: similar to claudin 4 [Canis familiar... 103 3e-22
Alignment gi|XP_544876.1| PREDICTED: similar to claudin 14 (predicted) [C... 99 5e-21
Alignment gi|XP_850248.1| PREDICTED: similar to Claudin-1 [Canis familiar... 99 6e-21
Alignment gi|XP_543546.2| PREDICTED: similar to claudin 5 [Canis familiar... 99 6e-21
>ref|XP_850281.1| PREDICTED: similar to Claudin-15 [Canis familiaris].
Length = 179
Score = 181 bits (459), Expect = 1e-45
Identities = 93/133 (69%), Positives = 100/133 (75%)
Frame = +3
Query: 207 MSVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVY 386
MSVAVE FGFFM TLP+S WRVSTVHG+VITTNTIFENLW+SCATDSLGVY
Sbjct: 1 MSVAVETFGFFMAALGLLMLGVTLPNSYWRVSTVHGSVITTNTIFENLWFSCATDSLGVY 60
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
+C EFPS+LALSGY+QACRALMITAI RC NIGG+ELSRK KLAATA
Sbjct: 61 SCREFPSLLALSGYLQACRALMITAIFLGFLGLFLGMVGLRCINIGGMELSRKAKLAATA 120
Query: 567 GALHILAGVCGMV 605
G LHILAG G V
Sbjct: 121 GVLHILAGNWGKV 133
>ref|XP_534163.1| PREDICTED: similar to claudin 10 isoform b isoform 1 [Canis
familiaris].
Length = 231
Score = 159 bits (401), Expect = 5e-39
Identities = 81/165 (49%), Positives = 98/165 (59%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYN 389
S A EI F + TLP W+VST+ G VITT T + NLW +C TDS GV N
Sbjct: 3 STASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKTCVTDSTGVSN 62
Query: 390 CWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAG 569
C +FPSMLAL GYIQACR LMI A+ +CT +GG + K K+A AG
Sbjct: 63 CKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKIACLAG 121
Query: 570 ALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGW 704
+ IL+G+C M S YA IT +FFDPLY KYELG AL++GW
Sbjct: 122 IVFILSGLCSMTGCSLYANKITTEFFDPLYVEQKYELGAALFIGW 166
>ref|XP_858900.1| PREDICTED: similar to claudin 10 isoform b isoform 3 [Canis
familiaris].
Length = 195
Score = 139 bits (350), Expect = 4e-33
Identities = 72/150 (48%), Positives = 87/150 (58%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYN 389
S A EI F + TLP W+VST+ G VITT T + NLW +C TDS GV N
Sbjct: 3 STASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKTCVTDSTGVSN 62
Query: 390 CWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAG 569
C +FPSMLAL GYIQACR LMI A+ +CT +GG + K K+A AG
Sbjct: 63 CKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKIACLAG 121
Query: 570 ALHILAGVCGMVAISWYAFNITRDFFDPLY 659
+ IL+G+C M S YA IT +FFDPLY
Sbjct: 122 IVFILSGLCSMTGCSLYANKITTEFFDPLY 151
>ref|XP_858821.1| PREDICTED: similar to claudin 10 isoform a isoform 2 [Canis
familiaris].
Length = 229
Score = 122 bits (305), Expect = 7e-28
Identities = 58/140 (41%), Positives = 85/140 (60%)
Frame = +3
Query: 285 SSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYNCWEFPSMLALSGYIQACRALMITAI 464
+ W+V+T +VIT +++ LW +CA ++LG ++C ++ + GYIQACR LMI A+
Sbjct: 26 NEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVEGYIQACRGLMIAAV 85
Query: 465 XXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGALHILAGVCGMVAISWYAFNITRDF 644
+CT +GG + + K K+A AG + IL+G+C M S YA IT +F
Sbjct: 86 SLGFFGSIFALFGMKCTKVGGSDKA-KAKIACLAGIVFILSGLCSMTGCSLYANKITTEF 144
Query: 645 FDPLYPGTKYELGPALYLGW 704
FDPLY KYELG AL++GW
Sbjct: 145 FDPLYVEQKYELGAALFIGW 164
>ref|XP_848612.1| PREDICTED: similar to claudin 19 (predicted) [Canis familiaris].
Length = 302
Score = 115 bits (289), Expect = 5e-26
Identities = 56/166 (33%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGN-VITTNTIFENLWYSCATDSLGVYNCW 395
+++ G+F+ + W+ S+ G+ +IT ++E LW SCA+ S G C
Sbjct: 97 LQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCK 156
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LAL G+IQ+ RALM+ A+ +CT +G + K ++A + G L
Sbjct: 157 LYDSLLALEGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRIAISGGVL 216
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
+LAG+C + A+SWYA +T++FF+P P +YE G AL++GW +
Sbjct: 217 FLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGSALFVGWAS 262
>ref|XP_546584.2| PREDICTED: similar to Claudin-7 (CLDN-7) [Canis familiaris].
Length = 217
Score = 110 bits (275), Expect = 2e-24
Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVYNCW 395
+++ GF + + W++S+ G N+IT +++ LW C T S G+ +C
Sbjct: 6 LQLLGFALALVGWAGLVASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LALS +QA RALM+ ++ +CTN GG + +K ++A T G +
Sbjct: 66 MYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTNCGGDDKVKKARIAMTGGII 125
Query: 576 HILA------GVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGW 704
I+ G+ +VA SWY I DF++PL P KYE GPA+++GW
Sbjct: 126 FIVGGEQQAPGLAALVACSWYGHQIVTDFYNPLVPMNIKYEFGPAIFIGW 175
>ref|XP_546920.2| PREDICTED: similar to claudin 4 [Canis familiaris].
Length = 210
Score = 103 bits (256), Expect = 3e-22
Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 2/169 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVY 386
S+ +++ G + + WRV+ G N++T+ TI+E LW +C S G
Sbjct: 3 SMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQM 62
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
C + S+LAL +QA RALM+ +I +CTN E S K K A
Sbjct: 63 QCKVYDSLLALPQDLQAARALMVVSIILAALGVLLSVVGGKCTNCVEDE-SAKAKTMIVA 121
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPL-YPGTKYELGPALYLGWTA 710
G + +LAG+ MV SW A NI RDF++PL G K E+G +LY+GW A
Sbjct: 122 GVVFLLAGLLVMVPASWTANNIIRDFYNPLVVSGQKREMGASLYVGWAA 170
>ref|XP_544876.1| PREDICTED: similar to claudin 14 (predicted) [Canis familiaris].
Length = 237
Score = 99.4 bits (246), Expect = 5e-21
Identities = 71/227 (31%), Positives = 105/227 (46%), Gaps = 4/227 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXT--LPHSSWR-VSTVHGNVITTNTIFENLWYSCATDSLG 380
S AV++ GF + T LPH WR + V N++T + + LW C S G
Sbjct: 3 STAVQLLGFLLSFLGLVGTLITTILPH--WRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 381 VYNCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAA 560
+Y C + S+LAL +QA RALM+ + +CT KT A
Sbjct: 61 IYQCQIYRSLLALPRDLQAARALMVISCLLSAAACACAVVGMKCTRC-AKGTPAKTVCAV 119
Query: 561 TAGALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTAXXXXXXXXX 737
GAL +LAG+ MVA+SW ++ ++F++PL P G K+ELG ALYLG+ +
Sbjct: 120 LGGALFLLAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFELGQALYLGFIS---SSLSLI 176
Query: 738 XXXXXXXXAQDDDPAANVRVPYKAPMPASSLTARLPAVASDEDGDSS 878
D+ P+ +VP +A ++ R PA D S+
Sbjct: 177 GGTLLCLSCLDEVPSGPHQVPPRATTATTAPAYRPPAAFKDNRAPSA 223
>ref|XP_850248.1| PREDICTED: similar to Claudin-1 [Canis familiaris].
Length = 211
Score = 99.0 bits (245), Expect = 6e-21
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 2/169 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVY 386
+ +++ GF + + W++ + G N++T I+E LW SC + S G
Sbjct: 3 NAGLQLLGFLLAFLGWVGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQI 62
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
C F S+L L+ +QA RALM+ I +C + +K ++A
Sbjct: 63 QCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATIGMKCMKCMEDDEVQKMRMAVIG 122
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
G + ++AG+ +VA +WY I +DF+DP+ P +YE G AL+ GW A
Sbjct: 123 GVIFLIAGLAVLVATAWYGNRIVQDFYDPMTPVNARYEFGQALFTGWAA 171
>ref|XP_543546.2| PREDICTED: similar to claudin 5 [Canis familiaris].
Length = 302
Score = 99.0 bits (245), Expect = 6e-21
Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 2/169 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVST-VHGNVITTNTIFENLWYSCATDSLGVY 386
S A+EI G + W+V+ + N++T T ++ LW SC S G
Sbjct: 87 SAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHM 146
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
C + S+LALS +QA RAL + A+ +CT K ++A T
Sbjct: 147 QCKVYDSVLALSTEVQAARALTVGAVLLALVALFVTLAGAQCTTCVA-PGPAKARVALTG 205
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
GAL+ L G+ +V + W+A + R+F+DP P KYELG ALY+GW A
Sbjct: 206 GALYALCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAA 254
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,275,036
Number of extensions: 1064532
Number of successful extensions: 5940
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 5852
Number of HSP's successfully gapped: 23
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004259
(1021 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172009.1| claudin-15 [Homo sapiens]. 310 1e-84
Alignment gi|NP_055158.1| claudin-15 [Homo sapiens]. 310 1e-84
Alignment gi|NP_008915.1| claudin-10 isoform b [Homo sapiens]. 157 1e-38
Alignment gi|NP_878268.1| claudin-10 isoform a [Homo sapiens]. 120 2e-27
Alignment gi|NP_001116867.1| claudin-19 isoform b [Homo sapiens]. 119 4e-27
Alignment gi|NP_683763.2| claudin-19 isoform a [Homo sapiens]. 119 4e-27
Alignment gi|NP_001171951.1| claudin-7 isoform 1 [Homo sapiens]. 114 2e-25
Alignment gi|NP_001298.3| claudin-7 isoform 1 [Homo sapiens]. 114 2e-25
Alignment gi|NP_001153572.1| claudin-10 isoform a_i1 [Homo sapiens]. 103 3e-22
Alignment gi|NP_066924.1| claudin-1 [Homo sapiens]. 100 2e-21
>ref|NP_001172009.1| claudin-15 [Homo sapiens].
Length = 228
Score = 310 bits (795), Expect = 1e-84
Identities = 155/230 (67%), Positives = 168/230 (73%)
Frame = +3
Query: 207 MSVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVY 386
MS+AVE FGFFM TLP+S WRVSTVHGNVITTNTIFENLW+SCATDSLGVY
Sbjct: 1 MSMAVETFGFFMATVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCATDSLGVY 60
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
NCWEFPSMLALSGYIQACRALMITAI RCTNIGGLELSRK KLAATA
Sbjct: 61 NCWEFPSMLALSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATA 120
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWTAXXXXXXXXXXXX 746
GALHILAG+CGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGW+A
Sbjct: 121 GALHILAGICGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWSASLISILGGLCLC 180
Query: 747 XXXXXAQDDDPAANVRVPYKAPMPASSLTARLPAVASDEDGDSSFASMGK 896
D+DPAA+ R PY+AP+ +P SD++GDSSF G+
Sbjct: 181 SACCCGSDEDPAASARRPYQAPVSV------MPVATSDQEGDSSFGKYGR 224
>ref|NP_055158.1| claudin-15 [Homo sapiens].
Length = 228
Score = 310 bits (795), Expect = 1e-84
Identities = 155/230 (67%), Positives = 168/230 (73%)
Frame = +3
Query: 207 MSVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVY 386
MS+AVE FGFFM TLP+S WRVSTVHGNVITTNTIFENLW+SCATDSLGVY
Sbjct: 1 MSMAVETFGFFMATVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCATDSLGVY 60
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
NCWEFPSMLALSGYIQACRALMITAI RCTNIGGLELSRK KLAATA
Sbjct: 61 NCWEFPSMLALSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATA 120
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWTAXXXXXXXXXXXX 746
GALHILAG+CGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGW+A
Sbjct: 121 GALHILAGICGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWSASLISILGGLCLC 180
Query: 747 XXXXXAQDDDPAANVRVPYKAPMPASSLTARLPAVASDEDGDSSFASMGK 896
D+DPAA+ R PY+AP+ +P SD++GDSSF G+
Sbjct: 181 SACCCGSDEDPAASARRPYQAPVSV------MPVATSDQEGDSSFGKYGR 224
>ref|NP_008915.1| claudin-10 isoform b [Homo sapiens].
Length = 228
Score = 157 bits (397), Expect = 1e-38
Identities = 80/165 (48%), Positives = 98/165 (59%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYN 389
S A EI F + TLP W+VST+ G VITT T + NLW +C TDS GV N
Sbjct: 3 STASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSN 62
Query: 390 CWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAG 569
C +FPSMLAL GYIQACR LMI A+ +CT +GG + K K+A AG
Sbjct: 63 CKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKIACLAG 121
Query: 570 ALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGW 704
+ IL+G+C M S YA IT +FFDPL+ KYELG AL++GW
Sbjct: 122 IVFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGW 166
>ref|NP_878268.1| claudin-10 isoform a [Homo sapiens].
Length = 226
Score = 120 bits (302), Expect = 2e-27
Identities = 57/140 (40%), Positives = 85/140 (60%)
Frame = +3
Query: 285 SSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYNCWEFPSMLALSGYIQACRALMITAI 464
+ W+V+T +VIT +++ LW +CA ++LG ++C ++ ++GYIQACR LMI A+
Sbjct: 26 NEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVAGYIQACRGLMIAAV 85
Query: 465 XXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGALHILAGVCGMVAISWYAFNITRDF 644
+CT +GG + K K+A AG + IL+G+C M S YA IT +F
Sbjct: 86 SLGFFGSIFALFGMKCTKVGGSD-KAKAKIACLAGIVFILSGLCSMTGCSLYANKITTEF 144
Query: 645 FDPLYPGTKYELGPALYLGW 704
FDPL+ KYELG AL++GW
Sbjct: 145 FDPLFVEQKYELGAALFIGW 164
>ref|NP_001116867.1| claudin-19 isoform b [Homo sapiens].
Length = 211
Score = 119 bits (298), Expect = 4e-27
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGN-VITTNTIFENLWYSCATDSLGVYNCW 395
+++ G+F+ + W+ S+ G+ +IT ++E LW SCA+ S G C
Sbjct: 6 LQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LAL G+IQ+ RALM+ A+ +CT +G K ++A GAL
Sbjct: 66 LYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGAL 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
ILAG+C + A+SWYA +T++FF+P P +YE GPAL++GW +
Sbjct: 126 FILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWAS 171
>ref|NP_683763.2| claudin-19 isoform a [Homo sapiens].
Length = 224
Score = 119 bits (298), Expect = 4e-27
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGN-VITTNTIFENLWYSCATDSLGVYNCW 395
+++ G+F+ + W+ S+ G+ +IT ++E LW SCA+ S G C
Sbjct: 6 LQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LAL G+IQ+ RALM+ A+ +CT +G K ++A GAL
Sbjct: 66 LYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGAL 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
ILAG+C + A+SWYA +T++FF+P P +YE GPAL++GW +
Sbjct: 126 FILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWAS 171
>ref|NP_001171951.1| claudin-7 isoform 1 [Homo sapiens].
Length = 211
Score = 114 bits (284), Expect = 2e-25
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 2/164 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVYNCW 395
+++ GF M W++S+ G N+IT +++ LW C T S G+ +C
Sbjct: 6 LQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LALS +QA RALM+ ++ +CT GG + +K ++A G +
Sbjct: 66 MYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGII 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGW 704
I+AG+ +VA SWY I DF++PL P KYE GPA+++GW
Sbjct: 126 FIVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGW 169
>ref|NP_001298.3| claudin-7 isoform 1 [Homo sapiens].
Length = 211
Score = 114 bits (284), Expect = 2e-25
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 2/164 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVYNCW 395
+++ GF M W++S+ G N+IT +++ LW C T S G+ +C
Sbjct: 6 LQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LALS +QA RALM+ ++ +CT GG + +K ++A G +
Sbjct: 66 MYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGII 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGW 704
I+AG+ +VA SWY I DF++PL P KYE GPA+++GW
Sbjct: 126 FIVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGW 169
>ref|NP_001153572.1| claudin-10 isoform a_i1 [Homo sapiens].
Length = 207
Score = 103 bits (257), Expect = 3e-22
Identities = 54/140 (38%), Positives = 75/140 (53%)
Frame = +3
Query: 285 SSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYNCWEFPSMLALSGYIQACRALMITAI 464
+ W+V+T +VIT +++ LW +CA GYIQACR LMI A+
Sbjct: 26 NEWKVTTRASSVITATWVYQGLWMNCA-------------------GYIQACRGLMIAAV 66
Query: 465 XXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGALHILAGVCGMVAISWYAFNITRDF 644
+CT +GG + + K K+A AG + IL+G+C M S YA IT +F
Sbjct: 67 SLGFFGSIFALFGMKCTKVGGSDKA-KAKIACLAGIVFILSGLCSMTGCSLYANKITTEF 125
Query: 645 FDPLYPGTKYELGPALYLGW 704
FDPL+ KYELG AL++GW
Sbjct: 126 FDPLFVEQKYELGAALFIGW 145
>ref|NP_066924.1| claudin-1 [Homo sapiens].
Length = 211
Score = 100 bits (249), Expect = 2e-21
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 2/169 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVY 386
+ +++ GF + + WR+ + G N++T ++E LW SC + S G
Sbjct: 3 NAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQI 62
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
C F S+L LS +QA RALM+ I +C + +K ++A
Sbjct: 63 QCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAVIG 122
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
GA+ +LAG+ +VA +WY I ++F+DP+ P +YE G AL+ GW A
Sbjct: 123 GAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAA 171
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,397,370
Number of extensions: 1029824
Number of successful extensions: 5212
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 5097
Number of HSP's successfully gapped: 35
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004259
(1021 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068365.1| claudin-15 [Mus musculus]. 263 2e-70
Alignment gi|NP_067361.2| claudin-10A isoform b [Mus musculus]. 161 9e-40
Alignment gi|NP_001153571.1| claudin-10A isoform b_i1 [Mus musculus]. 141 7e-34
Alignment gi|NP_076367.2| claudin-10A isoform a [Mus musculus]. 122 6e-28
Alignment gi|NP_001033679.1| claudin-19 isoform 1 [Mus musculus]. 121 1e-27
Alignment gi|NP_694745.1| claudin-19 isoform 2 [Mus musculus]. 121 1e-27
Alignment gi|NP_001180548.1| claudin-7 [Mus musculus]. 115 5e-26
Alignment gi|NP_058583.1| claudin-7 [Mus musculus]. 115 5e-26
Alignment gi|NP_001153568.1| claudin-10A isoform a_i1 [Mus musculus]. 105 7e-23
Alignment gi|NP_001153569.1| claudin-10A isoform a_i2 [Mus musculus]. 102 5e-22
>ref|NP_068365.1| claudin-15 [Mus musculus].
Length = 227
Score = 263 bits (672), Expect = 2e-70
Identities = 136/230 (59%), Positives = 150/230 (65%)
Frame = +3
Query: 207 MSVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVY 386
MSVAVE FGFFM TL +S WRVSTVHGNVITTNTIFENLWYSCATDSLGV
Sbjct: 1 MSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTVHGNVITTNTIFENLWYSCATDSLGVS 60
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
NCW+FPSMLALSGY+Q CRALMITAI RCTN+G ++LS+K KL A A
Sbjct: 61 NCWDFPSMLALSGYVQGCRALMITAILLGFLGLFLGMVGLRCTNVGNMDLSKKAKLLAIA 120
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWTAXXXXXXXXXXXX 746
G LHILAG CGMVAISWYA NIT DFF+PLY GTKYELGPALYLGW+A
Sbjct: 121 GTLHILAGACGMVAISWYAVNITTDFFNPLYAGTKYELGPALYLGWSASLLSILGGICVF 180
Query: 747 XXXXXAQDDDPAANVRVPYKAPMPASSLTARLPAVASDEDGDSSFASMGK 896
+ ++PA +PYK T +P SDE D SF GK
Sbjct: 181 STCCCSSKEEPATRAGLPYKPS------TVVIPRATSDE-SDISFGKYGK 223
>ref|NP_067361.2| claudin-10A isoform b [Mus musculus].
Length = 231
Score = 161 bits (407), Expect = 9e-40
Identities = 83/165 (50%), Positives = 98/165 (59%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYN 389
S A+EI F + TLP W+VST+ G VITT T F NLW C TDS GV N
Sbjct: 3 STALEIVAFVVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYFANLWKICVTDSTGVAN 62
Query: 390 CWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAG 569
C EFPSMLAL GYIQACR LMI A+ +CT +GG + K K+A AG
Sbjct: 63 CKEFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-QAKAKIACLAG 121
Query: 570 ALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGW 704
+ IL+G+C M S YA IT +FFDPLY KYELG AL++GW
Sbjct: 122 IVFILSGLCSMTGCSLYANKITTEFFDPLYMEQKYELGAALFIGW 166
>ref|NP_001153571.1| claudin-10A isoform b_i1 [Mus musculus].
Length = 195
Score = 141 bits (356), Expect = 7e-34
Identities = 74/150 (49%), Positives = 87/150 (58%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYN 389
S A+EI F + TLP W+VST+ G VITT T F NLW C TDS GV N
Sbjct: 3 STALEIVAFVVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYFANLWKICVTDSTGVAN 62
Query: 390 CWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAG 569
C EFPSMLAL GYIQACR LMI A+ +CT +GG + K K+A AG
Sbjct: 63 CKEFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-QAKAKIACLAG 121
Query: 570 ALHILAGVCGMVAISWYAFNITRDFFDPLY 659
+ IL+G+C M S YA IT +FFDPLY
Sbjct: 122 IVFILSGLCSMTGCSLYANKITTEFFDPLY 151
>ref|NP_076367.2| claudin-10A isoform a [Mus musculus].
Length = 229
Score = 122 bits (305), Expect = 6e-28
Identities = 58/140 (41%), Positives = 85/140 (60%)
Frame = +3
Query: 285 SSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYNCWEFPSMLALSGYIQACRALMITAI 464
+ W+V+T +VIT +++ LW +CA ++LG ++C ++ + GYIQACR LMI A+
Sbjct: 26 NEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVEGYIQACRGLMIAAV 85
Query: 465 XXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGALHILAGVCGMVAISWYAFNITRDF 644
+CT +GG + + K K+A AG + IL+G+C M S YA IT +F
Sbjct: 86 SLGFFGSIFALFGMKCTKVGGSDQA-KAKIACLAGIVFILSGLCSMTGCSLYANKITTEF 144
Query: 645 FDPLYPGTKYELGPALYLGW 704
FDPLY KYELG AL++GW
Sbjct: 145 FDPLYMEQKYELGAALFIGW 164
>ref|NP_001033679.1| claudin-19 isoform 1 [Mus musculus].
Length = 224
Score = 121 bits (303), Expect = 1e-27
Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGN-VITTNTIFENLWYSCATDSLGVYNCW 395
+++ G+F+ + W+ S+ G+ +IT ++E LW SCA+ S G C
Sbjct: 6 LQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LAL G+IQ+ RALM+ A+ +CT +G + K+++A + GAL
Sbjct: 66 LYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKSRVAISGGAL 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
+LAG+C + A+SWYA +T++FF+P P +YE GPAL++GW +
Sbjct: 126 FLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWAS 171
>ref|NP_694745.1| claudin-19 isoform 2 [Mus musculus].
Length = 211
Score = 121 bits (303), Expect = 1e-27
Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGN-VITTNTIFENLWYSCATDSLGVYNCW 395
+++ G+F+ + W+ S+ G+ +IT ++E LW SCA+ S G C
Sbjct: 6 LQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LAL G+IQ+ RALM+ A+ +CT +G + K+++A + GAL
Sbjct: 66 LYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKSRVAISGGAL 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
+LAG+C + A+SWYA +T++FF+P P +YE GPAL++GW +
Sbjct: 126 FLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWAS 171
>ref|NP_001180548.1| claudin-7 [Mus musculus].
Length = 211
Score = 115 bits (288), Expect = 5e-26
Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVYNCW 395
+++ GF M + W++S+ G N+IT +++ LW C T S G+ +C
Sbjct: 6 LQLLGFSMAMLGWVGLIASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LAL G +QA RALM+ ++ +CT GG + ++K ++A T G +
Sbjct: 66 MYDSVLALPGALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKAKKARIAMTGGIV 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGW 704
I+AG+ +VA SW I DF++PL P KYE GPA+++GW
Sbjct: 126 FIVAGLAALVACSWIGHQIVTDFYNPLTPMNVKYEFGPAIFIGW 169
>ref|NP_058583.1| claudin-7 [Mus musculus].
Length = 211
Score = 115 bits (288), Expect = 5e-26
Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVYNCW 395
+++ GF M + W++S+ G N+IT +++ LW C T S G+ +C
Sbjct: 6 LQLLGFSMAMLGWVGLIASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LAL G +QA RALM+ ++ +CT GG + ++K ++A T G +
Sbjct: 66 MYDSVLALPGALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKAKKARIAMTGGIV 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGW 704
I+AG+ +VA SW I DF++PL P KYE GPA+++GW
Sbjct: 126 FIVAGLAALVACSWIGHQIVTDFYNPLTPMNVKYEFGPAIFIGW 169
>ref|NP_001153568.1| claudin-10A isoform a_i1 [Mus musculus].
Length = 210
Score = 105 bits (261), Expect = 7e-23
Identities = 55/140 (39%), Positives = 75/140 (53%)
Frame = +3
Query: 285 SSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYNCWEFPSMLALSGYIQACRALMITAI 464
+ W+V+T +VIT +++ LW +CA GYIQACR LMI A+
Sbjct: 26 NEWKVTTRASSVITATWVYQGLWMNCA-------------------GYIQACRGLMIAAV 66
Query: 465 XXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGALHILAGVCGMVAISWYAFNITRDF 644
+CT +GG + + K K+A AG + IL+G+C M S YA IT +F
Sbjct: 67 SLGFFGSIFALFGMKCTKVGGSDQA-KAKIACLAGIVFILSGLCSMTGCSLYANKITTEF 125
Query: 645 FDPLYPGTKYELGPALYLGW 704
FDPLY KYELG AL++GW
Sbjct: 126 FDPLYMEQKYELGAALFIGW 145
>ref|NP_001153569.1| claudin-10A isoform a_i2 [Mus musculus].
Length = 193
Score = 102 bits (254), Expect = 5e-22
Identities = 49/125 (39%), Positives = 73/125 (58%)
Frame = +3
Query: 285 SSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYNCWEFPSMLALSGYIQACRALMITAI 464
+ W+V+T +VIT +++ LW +CA ++LG ++C ++ + GYIQACR LMI A+
Sbjct: 26 NEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVEGYIQACRGLMIAAV 85
Query: 465 XXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGALHILAGVCGMVAISWYAFNITRDF 644
+CT +GG + K K+A AG + IL+G+C M S YA IT +F
Sbjct: 86 SLGFFGSIFALFGMKCTKVGGSD-QAKAKIACLAGIVFILSGLCSMTGCSLYANKITTEF 144
Query: 645 FDPLY 659
FDPLY
Sbjct: 145 FDPLY 149
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,427,932
Number of extensions: 833898
Number of successful extensions: 4249
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 4164
Number of HSP's successfully gapped: 31
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004259
(1021 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155115.1| claudin-15 [Sus scrofa]. 369 e-102
Alignment gi|NP_001230373.1| claudin-10 [Sus scrofa]. 156 2e-38
Alignment gi|NP_001153548.1| claudin-7 [Sus scrofa]. 122 2e-28
Alignment gi|XP_003358291.1| PREDICTED: claudin-7-like [Sus scrofa]. 122 2e-28
Alignment gi|NP_001153556.1| claudin-19 [Sus scrofa]. 120 1e-27
Alignment gi|NP_001155109.1| claudin-4 [Sus scrofa]. 103 2e-22
Alignment gi|NP_001155108.1| claudin-5 [Sus scrofa]. 99 5e-21
Alignment gi|XP_003358797.1| PREDICTED: claudin-1-like [Sus scrofa]. 96 3e-20
Alignment gi|NP_001155114.1| claudin-14 [Sus scrofa]. 92 4e-19
Alignment gi|NP_001155119.1| claudin-9 [Sus scrofa]. 89 5e-18
>ref|NP_001155115.1| claudin-15 [Sus scrofa].
Length = 234
Score = 369 bits (946), Expect = e-102
Identities = 186/230 (80%), Positives = 186/230 (80%)
Frame = +3
Query: 207 MSVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVY 386
MSVAVEIFGFFM TLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVY
Sbjct: 1 MSVAVEIFGFFMAALGLVLLGVTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVY 60
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
NCWEFPSMLALSGYIQACRALMITAI RCTNIGGLELSRKTKLAATA
Sbjct: 61 NCWEFPSMLALSGYIQACRALMITAILLGFLGLFLGMVGLRCTNIGGLELSRKTKLAATA 120
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWTAXXXXXXXXXXXX 746
GALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWTA
Sbjct: 121 GALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGWTASLLSILGGICLC 180
Query: 747 XXXXXAQDDDPAANVRVPYKAPMPASSLTARLPAVASDEDGDSSFASMGK 896
AQDDDPAANVRVPYKAPMPASSLTARLPAVASDEDGDSSF GK
Sbjct: 181 SSCCCAQDDDPAANVRVPYKAPMPASSLTARLPAVASDEDGDSSFGKYGK 230
>ref|NP_001230373.1| claudin-10 [Sus scrofa].
Length = 232
Score = 156 bits (394), Expect = 2e-38
Identities = 80/165 (48%), Positives = 97/165 (58%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGNVITTNTIFENLWYSCATDSLGVYN 389
S A EI F + TLP W+VST+ G VITT T + NLW +C TDS GV N
Sbjct: 3 STASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSN 62
Query: 390 CWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAG 569
C +FPSMLAL GYIQACR LMI A+ +CT +GG + K K+A AG
Sbjct: 63 CKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKMACLAG 121
Query: 570 ALHILAGVCGMVAISWYAFNITRDFFDPLYPGTKYELGPALYLGW 704
+ IL+G+C M S YA IT +FFDP Y KYELG AL++GW
Sbjct: 122 IVFILSGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGW 166
>ref|NP_001153548.1| claudin-7 [Sus scrofa].
Length = 211
Score = 122 bits (307), Expect = 2e-28
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 2/164 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVYNCW 395
+++ GF M W++S+ G N+IT +++ LW C T S G+ +C
Sbjct: 6 LQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LALS +QA RALM+ ++ +CTN GG + +K ++A T G +
Sbjct: 66 TYDSVLALSAALQATRALMVVSLVLGLMAMFVGTMGMKCTNCGGDDKVKKARIAMTGGII 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGW 704
I+AG+C ++A SWY I DF++PL P KYE GPA+++GW
Sbjct: 126 FIVAGLCALIACSWYGHQIVTDFYNPLVPTNVKYEFGPAIFIGW 169
>ref|XP_003358291.1| PREDICTED: claudin-7-like [Sus scrofa].
Length = 211
Score = 122 bits (307), Expect = 2e-28
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 2/164 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVYNCW 395
+++ GF M W++S+ G N+IT +++ LW C T S G+ +C
Sbjct: 6 LQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LALS +QA RALM+ ++ +CTN GG + +K ++A T G +
Sbjct: 66 TYDSVLALSAALQATRALMVVSLVLGLMAMFVGTMGMKCTNCGGDDKVKKARIAMTGGII 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGW 704
I+AG+C ++A SWY I DF++PL P KYE GPA+++GW
Sbjct: 126 FIVAGLCALIACSWYGHQIVTDFYNPLVPTNVKYEFGPAIFIGW 169
>ref|NP_001153556.1| claudin-19 [Sus scrofa].
Length = 224
Score = 120 bits (301), Expect = 1e-27
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Frame = +3
Query: 219 VEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHGN-VITTNTIFENLWYSCATDSLGVYNCW 395
+++ G+F+ + W+ S+ G+ +IT ++E LW SCA+ S G C
Sbjct: 6 LQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCK 65
Query: 396 EFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGAL 575
+ S+LAL G+IQ+ RALM+ A+ +CT +G K+++A GAL
Sbjct: 66 LYDSLLALEGHIQSARALMVVAVLLGFVGMVLSVVGMKCTRVGDSNPIAKSRVAIAGGAL 125
Query: 576 HILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
+LAG+C + A+SWYA +T++FF P P +YE GPAL++GW A
Sbjct: 126 FLLAGLCTLTAVSWYATLVTQEFFSPSTPVNARYEFGPALFVGWAA 171
>ref|NP_001155109.1| claudin-4 [Sus scrofa].
Length = 209
Score = 103 bits (257), Expect = 2e-22
Identities = 59/169 (34%), Positives = 87/169 (51%), Gaps = 2/169 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVY 386
S+ +++ G + + WRV+ G N++T+ TI+E LW +C S G
Sbjct: 3 SMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQM 62
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
C + S+LAL +QA RAL++ I +CTN E S K K A
Sbjct: 63 QCKVYDSLLALPQDLQAARALIVICIILAVLGVLLSVVGGKCTNCVDDE-SAKAKTMIVA 121
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLY-PGTKYELGPALYLGWTA 710
G + +LAG+ MV +SW A N+ RDF++PL G K E+G +LY+GW A
Sbjct: 122 GVVFLLAGLLVMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWAA 170
>ref|NP_001155108.1| claudin-5 [Sus scrofa].
Length = 218
Score = 98.6 bits (244), Expect = 5e-21
Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 2/169 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVST-VHGNVITTNTIFENLWYSCATDSLGVY 386
S A+EI G + W+V+ + N++T T ++ LW SC S G
Sbjct: 3 SAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHM 62
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
C + S+LALS +QA RAL + A+ +CT K ++A T
Sbjct: 63 QCKVYDSVLALSTEVQAARALTVGAVLLALVALFVTLAGAQCTTCVA-PGPGKARVALTG 121
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
GAL+ L G+ +V + W+A + R+F+DP P KYELG ALY+GW A
Sbjct: 122 GALYALCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAA 170
>ref|XP_003358797.1| PREDICTED: claudin-1-like [Sus scrofa].
Length = 211
Score = 95.9 bits (237), Expect = 3e-20
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 2/169 (1%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXTLPHSSWRVSTVHG-NVITTNTIFENLWYSCATDSLGVY 386
+ +++ GF + + W++ + G N++T I+E LW SC + S G
Sbjct: 3 NAGLQLLGFILAFLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQI 62
Query: 387 NCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAATA 566
C F S+L L+ +QA RALM+ I +C + +K ++A
Sbjct: 63 QCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATVGMKCMKCMEDDEVQKMRMAVIG 122
Query: 567 GALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWTA 710
G + +++G+ +VA +WY I ++F+DP+ P +YE G AL+ GW A
Sbjct: 123 GVIFLISGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAA 171
>ref|NP_001155114.1| claudin-14 [Sus scrofa].
Length = 239
Score = 92.4 bits (228), Expect = 4e-19
Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 4/169 (2%)
Frame = +3
Query: 210 SVAVEIFGFFMXXXXXXXXXXT--LPHSSWR-VSTVHGNVITTNTIFENLWYSCATDSLG 380
S AV++ GF + T LPH WR + V N++T + + LW C S G
Sbjct: 3 STAVQLLGFLLSFLGLVGTLLTTLLPH--WRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 381 VYNCWEFPSMLALSGYIQACRALMITAIXXXXXXXXXXXXXXRCTNIGGLELSRKTKLAA 560
+Y C + S+LAL +QA RALM+ + +CT K A
Sbjct: 61 IYQCQIYRSLLALPRDLQAARALMVISCLLSGVACACAVVGMKCTRC-AKGTPAKATFAV 119
Query: 561 TAGALHILAGVCGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGW 704
G L +LAG+ +VA+SW ++ ++F++PL P G K+E+G ALYLG+
Sbjct: 120 LGGVLFLLAGLLCLVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGF 168
>ref|NP_001155119.1| claudin-9 [Sus scrofa].
Length = 217
Score = 88.6 bits (218), Expect = 5e-18
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Frame = +3
Query: 291 WRVSTVHGN-VITTNTIFENLWYSCATDSLGVYNCWEFPSMLALSGYIQACRALMITAIX 467
W+V+ GN ++ ++E LW SCA S G C + S+LAL +QA RAL + A+
Sbjct: 30 WKVTAFIGNSIVVAQVVWEGLWMSCAVQSTGQMQCKVYDSLLALPQDLQAARALCVVALL 89
Query: 468 XXXXXXXXXXXXXRCTNIGGLELSRKTKLAATAGALHILAGVCGMVAISWYAFNITRDFF 647
+CT E K ++ TAG + +L+G+ ++ + W A I +DF+
Sbjct: 90 LALLGLLVAITGAQCTTCVEDE-GAKARIVLTAGVVLLLSGILVLIPVCWTAHAIIQDFY 148
Query: 648 DPLY-PGTKYELGPALYLGWTA 710
+PL K ELG +LYLGW A
Sbjct: 149 NPLVAEALKRELGASLYLGWAA 170
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,191,035
Number of extensions: 673484
Number of successful extensions: 3617
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3567
Number of HSP's successfully gapped: 21
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004259
(1021 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894574.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 438 e-120
>gb|GL894574.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3225
Length = 83014
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Minus
Query: 204 accatgtcggtggctgtggagatcttcggcttcttcatggcagccctggggttggtgctg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79968 accatgtcggtggctgtggagatcttcggcttcttcatggcagccctggggttggtgctg 79909
Query: 264 ctgggggtgacgctgccgcacagcagctggcgagtgtccaccgtgcacgggaacgtcatc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79908 ctgggggtgacgctgccgcacagcagctggcgagtgtccaccgtgcacgggaacgtcatc 79849
Query: 324 accaccaataccatcttcgagaacctctggtacagctgcgccaccgactccctcggggtc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79848 accaccaataccatcttcgagaacctctggtacagctgcgccaccgactccctcggggtc 79789
Query: 384 tacaactgctgggagttcccgtccatgctggccctctcggg 424
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 79788 tacaactgctgggagttcccgtccatgctggccctctcggg 79748
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 2 ttcctctgaccgacctgtggggaagcagagaggcctggagagagggaagacctgggccaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80170 ttcctctgaccgacctgtggggaagcagagaggcctggagagagggaagacctgggccaa 80111
Query: 62 ggaagaggcagaggctgcagcctgcctccccctgtccccagcctgcctccaccgccctcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80110 ggaagaggcagaggctgcagcctgcctccccctgtccccagcctgcctccaccgccctcc 80051
Query: 122 tcagccaaagccccttcgag 141
||||||||||||||||||||
Sbjct: 80050 tcagccaaagccccttcgag 80031
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 454 tcaccgccatcctcctgggcttcctgggcctcttcctgggcatggtggggctgcgctgca 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79641 tcaccgccatcctcctgggcttcctgggcctcttcctgggcatggtggggctgcgctgca 79582
Query: 514 cgaacattgggggcctggagctctccaggaaaaccaagctggcggctaccgcaggggccc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79581 cgaacattgggggcctggagctctccaggaaaaccaagctggcggctaccgcaggggccc 79522
Query: 574 tacacatactggcc 587
||||||||||||||
Sbjct: 79521 tacacatactggcc 79508
Score = 260 bits (131), Expect = 1e-66
Identities = 176/183 (96%), Gaps = 6/183 (3%)
Strand = Plus / Minus
Query: 843 cccgccgtagcctcggatgaagacggcgacagcagcttcgcca-gtatgggaaaaacgct 901
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 77909 cccgccgtagcctcggatgaagacggcgacagcagcttcggcaagtatgggaaaaacgct 77850
Query: 902 tacgtataggaggcctggcccggtggac-acattcgcttcctactgctcccagtggaacc 960
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 77849 tacgtataggaggcctggcccg-tggaccacattcgcttcctactgctcccagtggaacc 77791
Query: 961 cccgggctgcaggcgcgggtccctactccctggtaaca-gctctggg-ccagccttgcat 1018
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 77790 cccgggctgcaggcgcgggtccctactccctg-taacaagctctgggcccagccttgcat 77732
Query: 1019 cag 1021
|||
Sbjct: 77731 cag 77729
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 588 ggggtctgcgggatggtggctatctcctggtatgccttcaacatcacccgggacttcttc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78388 ggggtctgcgggatggtggctatctcctggtatgccttcaacatcacccgggacttcttc 78329
Query: 648 gaccccttgtatccggggaccaagt 672
|||||||||||||||||||||||||
Sbjct: 78328 gaccccttgtatccggggaccaagt 78304
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 706 ccgcctccctgctctccatcctgggcggcatctgcctctgctccagctgctgctgcgctc 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78149 ccgcctccctgctctccatcctgggcggcatctgcctctgctccagctgctgctgcgctc 78090
Query: 766 aggacgacgacccagcagccaa 787
||||||||||||||||||||||
Sbjct: 78089 aggacgacgacccagcagccaa 78068
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,975,251
Number of extensions: 292
Number of successful extensions: 292
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 6
Length of query: 1021
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1000
Effective length of database: 2,808,413,156
Effective search space: 2808413156000
Effective search space used: 2808413156000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)