Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004267
(940 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039784.1| 28S ribosomal protein S22, mitochondrial [Bo... 478 e-135
>ref|NP_001039784.1| 28S ribosomal protein S22, mitochondrial [Bos taurus].
Length = 359
Score = 478 bits (1230), Expect = e-135
Identities = 241/307 (78%), Positives = 255/307 (83%)
Frame = +2
Query: 20 MATLKASALLRSLQTNSCGTGRVCFPVXXXXXXXXXXXXXXXXSGTGTLCRXXXXXXXXX 199
MATL+ S L +L S G GRV F G GT CR
Sbjct: 1 MATLRVSLSLWNLHAGSRGAGRVYFRARARPRPGDLFQPLPGVCGAGTPCRGLCSEAESG 60
Query: 200 XXXIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEA 379
I+KPTFMDEEVQ+ILIKMTGLDL KIFKPA+QE KPPTYKLMTQAQLEEAT+QA+EA
Sbjct: 61 SPKIKKPTFMDEEVQSILIKMTGLDLLKIFKPAVQETKPPTYKLMTQAQLEEATRQAIEA 120
Query: 380 AKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTL 559
AKVRLKMPPVLEER PINDVLAEDKILEGTET KYVFTDISYSIPHRERFIVVREPSGTL
Sbjct: 121 AKVRLKMPPVLEERTPINDVLAEDKILEGTETGKYVFTDISYSIPHRERFIVVREPSGTL 180
Query: 560 RKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAE 739
RKASWEERDRMIQ+YFP+EGRR+LTPVIF+EENLQTMYSQD+HVDVLNLCVAQFEPDSA+
Sbjct: 181 RKASWEERDRMIQIYFPKEGRRVLTPVIFREENLQTMYSQDRHVDVLNLCVAQFEPDSAD 240
Query: 740 YIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLV 919
YIK+HH TYEDIDK GKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLV DA SLV
Sbjct: 241 YIKVHHQTYEDIDKYGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDAASLV 300
Query: 920 HLYHILH 940
LYHILH
Sbjct: 301 QLYHILH 307
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,747,922
Number of extensions: 910765
Number of successful extensions: 3132
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3119
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,306,398
Effective search space: 3018649978
Effective search space used: 3018649978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004267
(940 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865486.1| PREDICTED: similar to Mitochondrial 28S ribosom... 478 e-135
Alignment gi|XP_852337.1| PREDICTED: similar to Mitochondrial 28S ribosom... 473 e-134
Alignment gi|XP_535113.2| PREDICTED: similar to Mitochondrial 28S ribosom... 456 e-128
>ref|XP_865486.1| PREDICTED: similar to Mitochondrial 28S ribosomal protein S22
(S22mt) (MRP-S22) isoform 2 [Canis familiaris].
Length = 359
Score = 478 bits (1230), Expect = e-135
Identities = 241/307 (78%), Positives = 256/307 (83%)
Frame = +2
Query: 20 MATLKASALLRSLQTNSCGTGRVCFPVXXXXXXXXXXXXXXXXSGTGTLCRXXXXXXXXX 199
MA L+ S L SL T S + R CF G G CR
Sbjct: 1 MAALRTSVALWSLLTGSRNSERGCFRARIRPQLGALLQPPPVPCGVGPPCRRLASEAESG 60
Query: 200 XXXIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEA 379
I+KPTFMDEEVQN+LIKMTGL+LQK+FKPA+QELKPPTYKLMTQAQLEEAT++A+EA
Sbjct: 61 SPEIKKPTFMDEEVQNLLIKMTGLNLQKVFKPAIQELKPPTYKLMTQAQLEEATRKAIEA 120
Query: 380 AKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTL 559
AKVRLKMPPVLEER PINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTL
Sbjct: 121 AKVRLKMPPVLEERVPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTL 180
Query: 560 RKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAE 739
RKASWEERDRMIQ+YFP+EGRR+LTPVIFKEENL+ MYSQD+HVDVLNLCVAQFEPDSAE
Sbjct: 181 RKASWEERDRMIQIYFPKEGRRVLTPVIFKEENLRNMYSQDRHVDVLNLCVAQFEPDSAE 240
Query: 740 YIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLV 919
YIKIHH TYEDIDK GKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLV DATSLV
Sbjct: 241 YIKIHHQTYEDIDKHGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDATSLV 300
Query: 920 HLYHILH 940
LYHILH
Sbjct: 301 QLYHILH 307
>ref|XP_852337.1| PREDICTED: similar to Mitochondrial 28S ribosomal protein S22
(S22mt) (MRP-S22) isoform 1 [Canis familiaris].
Length = 360
Score = 473 bits (1218), Expect = e-134
Identities = 241/308 (78%), Positives = 256/308 (83%), Gaps = 1/308 (0%)
Frame = +2
Query: 20 MATLKASALLRSLQTNSCGTGRVCFPVXXXXXXXXXXXXXXXXSGTGTLCRXXXXXXXXX 199
MA L+ S L SL T S + R CF G G CR
Sbjct: 1 MAALRTSVALWSLLTGSRNSERGCFRARIRPQLGALLQPPPVPCGVGPPCRRLASEAAES 60
Query: 200 XXX-IRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVE 376
I+KPTFMDEEVQN+LIKMTGL+LQK+FKPA+QELKPPTYKLMTQAQLEEAT++A+E
Sbjct: 61 GSPEIKKPTFMDEEVQNLLIKMTGLNLQKVFKPAIQELKPPTYKLMTQAQLEEATRKAIE 120
Query: 377 AAKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGT 556
AAKVRLKMPPVLEER PINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGT
Sbjct: 121 AAKVRLKMPPVLEERVPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGT 180
Query: 557 LRKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSA 736
LRKASWEERDRMIQ+YFP+EGRR+LTPVIFKEENL+ MYSQD+HVDVLNLCVAQFEPDSA
Sbjct: 181 LRKASWEERDRMIQIYFPKEGRRVLTPVIFKEENLRNMYSQDRHVDVLNLCVAQFEPDSA 240
Query: 737 EYIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSL 916
EYIKIHH TYEDIDK GKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLV DATSL
Sbjct: 241 EYIKIHHQTYEDIDKHGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDATSL 300
Query: 917 VHLYHILH 940
V LYHILH
Sbjct: 301 VQLYHILH 308
>ref|XP_535113.2| PREDICTED: similar to Mitochondrial 28S ribosomal protein S22
(S22mt) (MRP-S22) [Canis familiaris].
Length = 378
Score = 456 bits (1172), Expect = e-128
Identities = 223/263 (84%), Positives = 237/263 (90%)
Frame = +2
Query: 152 GTGTLCRXXXXXXXXXXXXIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKL 331
G G C I+KPTFMDEEVQN+LIKMTGL+LQK+FKPA+QELKPPTYKL
Sbjct: 64 GVGPPCHWLASEAESGSPEIKKPTFMDEEVQNLLIKMTGLNLQKVFKPAIQELKPPTYKL 123
Query: 332 MTQAQLEEATKQAVEAAKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSI 511
MTQAQLEEAT++A+EAAKVRLKMPPVLEE PINDVLAEDKILEG ETAKY FTDISYSI
Sbjct: 124 MTQAQLEEATRKAIEAAKVRLKMPPVLEEPVPINDVLAEDKILEGAETAKYAFTDISYSI 183
Query: 512 PHRERFIVVREPSGTLRKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHV 691
PHRERFIVVREPSGTLRKASWEERDRMIQ+YFP+EGRR+LTPVIFKEENL+ +YSQD+HV
Sbjct: 184 PHRERFIVVREPSGTLRKASWEERDRMIQIYFPKEGRRVLTPVIFKEENLRNVYSQDRHV 243
Query: 692 DVLNLCVAQFEPDSAEYIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLL 871
DVLNLCVAQFEPDSAEYIKIHH TYEDIDK GKYDLL STRHFGGMAWYFVNKKKIDGLL
Sbjct: 244 DVLNLCVAQFEPDSAEYIKIHHQTYEDIDKHGKYDLLHSTRHFGGMAWYFVNKKKIDGLL 303
Query: 872 IDQIQRDLVSDATSLVHLYHILH 940
IDQIQRDLV DATSLV LYHILH
Sbjct: 304 IDQIQRDLVDDATSLVQLYHILH 326
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,346,464
Number of extensions: 940612
Number of successful extensions: 3389
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3349
Number of HSP's successfully gapped: 3
Length of query: 313
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 210
Effective length of database: 15,440,896
Effective search space: 3242588160
Effective search space used: 3242588160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004267
(940 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064576.1| 28S ribosomal protein S22, mitochondrial [Homo ... 450 e-126
>ref|NP_064576.1| 28S ribosomal protein S22, mitochondrial [Homo sapiens].
Length = 360
Score = 450 bits (1157), Expect = e-126
Identities = 231/308 (75%), Positives = 248/308 (80%), Gaps = 1/308 (0%)
Frame = +2
Query: 20 MATLKASALLRSLQTNSCGTGRVCFPVXXXXXXXXXXXXXXXXSGTGT-LCRXXXXXXXX 196
MA L + LL SL +S G RVCF G R
Sbjct: 1 MAPLGTTVLLWSLLRSSPGVERVCFRARIQPWHGGLLQPLPCSFEMGLPRRRFSSEAAES 60
Query: 197 XXXXIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVE 376
+KPTFMDEEVQ+IL KMTGL+LQK FKPA+QELKPPTYKLMTQAQLEEAT+QAVE
Sbjct: 61 GSPETKKPTFMDEEVQSILTKMTGLNLQKTFKPAIQELKPPTYKLMTQAQLEEATRQAVE 120
Query: 377 AAKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGT 556
AAKVRLKMPPVLEER PINDVLAEDKILEGTET KYVFTDISYSIPHRERFIVVREPSGT
Sbjct: 121 AAKVRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGT 180
Query: 557 LRKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSA 736
LRKASWEERDRMIQVYFP+EGR+ILTP+IFKEENL+TMYSQD+HVDVLNLC AQFEPDS
Sbjct: 181 LRKASWEERDRMIQVYFPKEGRKILTPIIFKEENLRTMYSQDRHVDVLNLCFAQFEPDST 240
Query: 737 EYIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSL 916
EYIK+HH TYEDIDK GKYDLLRSTR+FGGM WYFVN KKIDGLLIDQIQRDL+ DAT+L
Sbjct: 241 EYIKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDATNL 300
Query: 917 VHLYHILH 940
V LYH+LH
Sbjct: 301 VQLYHVLH 308
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,613,602
Number of extensions: 923713
Number of successful extensions: 3216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3189
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,934,836
Effective search space: 3151250396
Effective search space used: 3151250396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004267
(940 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079761.1| 28S ribosomal protein S22, mitochondrial [Mus m... 439 e-123
>ref|NP_079761.1| 28S ribosomal protein S22, mitochondrial [Mus musculus].
Length = 359
Score = 439 bits (1130), Expect = e-123
Identities = 212/244 (86%), Positives = 230/244 (94%)
Frame = +2
Query: 209 IRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEAAKV 388
++KP FMDEEVQ IL K+TGLDLQK F+PA+Q LKPPTYKLMTQAQLEEAT+ AVEAAKV
Sbjct: 64 VKKPAFMDEEVQRILTKITGLDLQKTFRPAIQPLKPPTYKLMTQAQLEEATRLAVEAAKV 123
Query: 389 RLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTLRKA 568
RLKMPPVLEER PINDVLAEDKILEGTET KYVFTDISY+IPHRERFIVVREPSGTLRKA
Sbjct: 124 RLKMPPVLEERKPINDVLAEDKILEGTETNKYVFTDISYNIPHRERFIVVREPSGTLRKA 183
Query: 569 SWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAEYIK 748
SWEERDR+IQ+YFP+EGRR+L PVIFK+ENL+TMYSQD+H DVLNLCVAQFEPDSAEYIK
Sbjct: 184 SWEERDRVIQIYFPKEGRRVLPPVIFKDENLKTMYSQDRHADVLNLCVAQFEPDSAEYIK 243
Query: 749 IHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLVHLY 928
+HH TYEDID+ GKY+LLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLV DATSLV LY
Sbjct: 244 VHHQTYEDIDRHGKYELLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDATSLVQLY 303
Query: 929 HILH 940
H+LH
Sbjct: 304 HMLH 307
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,267,473
Number of extensions: 780986
Number of successful extensions: 2395
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2379
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 212
Effective length of database: 12,583,923
Effective search space: 2667791676
Effective search space used: 2667791676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004267
(940 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926115.2| PREDICTED: 28S ribosomal protein S22, mitoch... 551 e-157
>ref|XP_001926115.2| PREDICTED: 28S ribosomal protein S22, mitochondrial [Sus scrofa].
Length = 323
Score = 551 bits (1420), Expect = e-157
Identities = 279/307 (90%), Positives = 279/307 (90%)
Frame = +2
Query: 20 MATLKASALLRSLQTNSCGTGRVCFPVXXXXXXXXXXXXXXXXSGTGTLCRXXXXXXXXX 199
MATLKASALLRSLQTNSCGTGRVCFPV SGTGTLCR
Sbjct: 1 MATLKASALLRSLQTNSCGTGRVCFPVRARPRPRALLQPLPGASGTGTLCRGLGSESESG 60
Query: 200 XXXIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEA 379
IRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEA
Sbjct: 61 NSEIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEA 120
Query: 380 AKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTL 559
AKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTL
Sbjct: 121 AKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTL 180
Query: 560 RKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAE 739
RKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAE
Sbjct: 181 RKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAE 240
Query: 740 YIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLV 919
YIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLV
Sbjct: 241 YIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLV 300
Query: 920 HLYHILH 940
HLYHILH
Sbjct: 301 HLYHILH 307
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,356,315
Number of extensions: 584446
Number of successful extensions: 2006
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1991
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 214
Effective length of database: 8,879,129
Effective search space: 1900133606
Effective search space used: 1900133606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004267
(940 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 379 e-102
gb|GL895393.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 303 9e-80
>Sscrofa_Chr13
|| Length = 218635234
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 1 gttagtggcccggataattatggctaccctcaaagcgtctgcgttgctgcggagcctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87874651 gttagtggcccggataattatggctaccctcaaagcgtctgcgttgctgcggagcctcca 87874710
Query: 61 gacaaattcttgcggcacggggcgggtttgtttcccggttcgcgctcggccccggccccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87874711 gacaaattcttgcggcacggggcgggtttgtttcccggttcgcgctcggccccggccccg 87874770
Query: 121 cgccctgctccagcctctgcccggggccagtgggacgggaacactatgccgtgggctcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87874771 cgccctgctccagcctctgcccggggccagtgggacgggaacactatgccgtgggctcgg 87874830
Query: 181 ctccgagtccg 191
|||||||||||
Sbjct: 87874831 ctccgagtccg 87874841
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 354 aggctacaaaacaggcagtagaggcagctaaagtccgattaaaaatgccaccagttctgg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87886173 aggctacaaaacaggcagtagaggcagctaaagtccgattaaaaatgccaccagttctgg 87886232
Query: 414 aagagcgggctccaataaatgatgtgttagctgaagataagattttggaaggaacagaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87886233 aagagcgggctccaataaatgatgtgttagctgaagataagattttggaaggaacagaaa 87886292
Query: 474 cagccaaatatgtgtttactgatatatcatacagcataccacaccggg 521
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87886293 cagccaaatatgtgtttactgatatatcatacagcataccacaccggg 87886340
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 191 gaatctggcaactcagagatcaggaagcctacatttatggatgaggaggtccaaaacata 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87884954 gaatctggcaactcagagatcaggaagcctacatttatggatgaggaggtccaaaacata 87885013
Query: 251 ctcatcaagatgacgggcttggatttgcagaagatttttaagccagctttacaagaactg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87885014 ctcatcaagatgacgggcttggatttgcagaagatttttaagccagctttacaagaactg 87885073
Query: 311 aagccaccaacttataagctaatgacccaagcacagctggaagagg 356
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87885074 aagccaccaacttataagctaatgacccaagcacagctggaagagg 87885119
Score = 289 bits (146), Expect = 1e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 749 attcatcatcacacctatgaagatatagataaatgtggaaagtatgaccttttacgttca 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87889861 attcatcatcacacctatgaagatatagataaatgtggaaagtatgaccttttacgttca 87889920
Query: 809 acaagacactttggtggaatggcttggtattttgtaaataagaaaaagattgatggctta 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87889921 acaagacactttggtggaatggcttggtattttgtaaataagaaaaagattgatggctta 87889980
Query: 869 ctgattgaccagattcagagagattt 894
||||||||||||||||||||||||||
Sbjct: 87889981 ctgattgaccagattcagagagattt 87890006
Score = 287 bits (145), Expect = 5e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 520 ggagcgttttattgtcgtcagagaaccaagtggcacactgcgcaaagcctcttgggaaga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87888501 ggagcgttttattgtcgtcagagaaccaagtggcacactgcgcaaagcctcttgggaaga 87888560
Query: 580 acgagaccgaatgattcaagtttatttcccaagagaaggtcgtagaattttaacaccagt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87888561 acgagaccgaatgattcaagtttatttcccaagagaaggtcgtagaattttaacaccagt 87888620
Query: 640 aattttcaaggaagaaaatcttcag 664
|||||||||||||||||||||||||
Sbjct: 87888621 aattttcaaggaagaaaatcttcag 87888645
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 663 agaccatgtacagccaggaccagcatgttgatgtcctcaatctctgcgttgcccaatttg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87888949 agaccatgtacagccaggaccagcatgttgatgtcctcaatctctgcgttgcccaatttg 87889008
Query: 723 agccagattctgctgaatatatcaaa 748
||||||||||||||||||||||||||
Sbjct: 87889009 agccagattctgctgaatatatcaaa 87889034
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 895 agtcagtgatgccaccagcttggtccacctctatcacatcctccat 940
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87892927 agtcagtgatgccaccagcttggtccacctctatcacatcctccat 87892972
>gb|GL895393.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3963
Length = 16971
Score = 303 bits (153), Expect = 9e-80
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 25 taccctcaaagcgtctgcgttgctgcggagcctccagacaaattcttgcggcacggggcg 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425 taccctcaaagcgtctgcgttgctgcggagcctccagacaaattcttgcggcacggggcg 2366
Query: 85 ggtttgtttcccggttcgcgctcggccccggccccgcgccctgctccagcctctgcccgg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2365 ggtttgtttcccggttcgcgctcggccccggccccgcgccctgctccagcctctgcccgg 2306
Query: 145 ggccagtgggacgggaacactatgccgtgggct 177
|||||||||||||||||||||||||||||||||
Sbjct: 2305 ggccagtgggacgggaacactatgccgtgggct 2273
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,120,675
Number of extensions: 229
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 8
Length of query: 940
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 919
Effective length of database: 2,808,413,156
Effective search space: 2580931690364
Effective search space used: 2580931690364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)