Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004269
(908 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179401.1| 5'-3' exoribonuclease 2 [Bos taurus]. 540 e-154
Alignment gi|XP_002692187.1| PREDICTED: 5'-3' exoribonuclease 2 [Bos taur... 540 e-154
Alignment gi|NP_001192964.1| 5'-3' exoribonuclease 1 [Bos taurus]. 252 3e-67
Alignment gi|XP_002685084.1| PREDICTED: 5'-3' exoribonuclease 1 isoform 2... 252 3e-67
Alignment gi|XP_002685083.1| PREDICTED: 5'-3' exoribonuclease 1 isoform 1... 252 3e-67
Alignment gi|XP_002702361.1| PREDICTED: 5'-3' exoribonuclease 1 [Bos taur... 252 3e-67
>ref|NP_001179401.1| 5'-3' exoribonuclease 2 [Bos taurus].
Length = 951
Score = 540 bits (1392), Expect = e-154
Identities = 261/277 (94%), Positives = 264/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEA +EKQRVREEILAKGG+LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAEIEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHDVKDCE 277
>ref|XP_002692187.1| PREDICTED: 5'-3' exoribonuclease 2 [Bos taurus].
Length = 951
Score = 540 bits (1392), Expect = e-154
Identities = 261/277 (94%), Positives = 264/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEA +EKQRVREEILAKGG+LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAEIEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHDVKDCE 277
>ref|NP_001192964.1| 5'-3' exoribonuclease 1 [Bos taurus].
Length = 1703
Score = 252 bits (644), Expect = 3e-67
Identities = 128/258 (49%), Positives = 173/258 (67%), Gaps = 2/258 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
Query: 256 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 429
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 430 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 609
FR++KE E ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 102 FRSAKEAEEKI-------KKAIEKGETLPAEA---RFDSNCITPGTEFMARLHEHLKYFV 151
Query: 610 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 789
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 790 LGLATHEPNFTIIREEFK 843
LGL +HE +F+++REE +
Sbjct: 212 LGLTSHEAHFSLLREEVR 229
>ref|XP_002685084.1| PREDICTED: 5'-3' exoribonuclease 1 isoform 2 [Bos taurus].
Length = 1703
Score = 252 bits (644), Expect = 3e-67
Identities = 128/258 (49%), Positives = 173/258 (67%), Gaps = 2/258 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
Query: 256 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 429
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 430 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 609
FR++KE E ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 102 FRSAKEAEEKI-------KKAIEKGETLPAEA---RFDSNCITPGTEFMARLHEHLKYFV 151
Query: 610 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 789
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 790 LGLATHEPNFTIIREEFK 843
LGL +HE +F+++REE +
Sbjct: 212 LGLTSHEAHFSLLREEVR 229
>ref|XP_002685083.1| PREDICTED: 5'-3' exoribonuclease 1 isoform 1 [Bos taurus].
Length = 1690
Score = 252 bits (644), Expect = 3e-67
Identities = 128/258 (49%), Positives = 173/258 (67%), Gaps = 2/258 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
Query: 256 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 429
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 430 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 609
FR++KE E ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 102 FRSAKEAEEKI-------KKAIEKGETLPAEA---RFDSNCITPGTEFMARLHEHLKYFV 151
Query: 610 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 789
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 790 LGLATHEPNFTIIREEFK 843
LGL +HE +F+++REE +
Sbjct: 212 LGLTSHEAHFSLLREEVR 229
>ref|XP_002702361.1| PREDICTED: 5'-3' exoribonuclease 1 [Bos taurus].
Length = 1690
Score = 252 bits (644), Expect = 3e-67
Identities = 128/258 (49%), Positives = 173/258 (67%), Gaps = 2/258 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
Query: 256 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 429
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 430 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 609
FR++KE E ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 102 FRSAKEAEEKI-------KKAIEKGETLPAEA---RFDSNCITPGTEFMARLHEHLKYFV 151
Query: 610 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 789
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 790 LGLATHEPNFTIIREEFK 843
LGL +HE +F+++REE +
Sbjct: 212 LGLTSHEAHFSLLREEVR 229
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,248,242
Number of extensions: 800193
Number of successful extensions: 2188
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2174
Number of HSP's successfully gapped: 6
Length of query: 302
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 200
Effective length of database: 14,306,398
Effective search space: 2861279600
Effective search space used: 2861279600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004269
(908 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856102.1| PREDICTED: similar to 5-3 exoribonuclease 2 iso... 544 e-155
Alignment gi|XP_856061.1| PREDICTED: similar to Y48B6A.3 isoform 10 [Cani... 544 e-155
Alignment gi|XP_856023.1| PREDICTED: similar to 5-3 exoribonuclease 2 iso... 544 e-155
Alignment gi|XP_855861.1| PREDICTED: similar to 5-3 exoribonuclease 2 iso... 544 e-155
Alignment gi|XP_855818.1| PREDICTED: similar to 5-3 exoribonuclease 2 (Dh... 544 e-155
Alignment gi|XP_534324.2| PREDICTED: similar to 5-3 exoribonuclease 2 iso... 544 e-155
Alignment gi|XP_855734.1| PREDICTED: similar to 5-3 exoribonuclease 2 iso... 544 e-155
Alignment gi|XP_855901.1| PREDICTED: similar to Y48B6A.3 isoform 6 [Canis... 532 e-151
Alignment gi|XP_855988.1| PREDICTED: similar to 5-3 exoribonuclease 2 iso... 523 e-148
Alignment gi|XP_855947.1| PREDICTED: similar to 5-3 exoribonuclease 2 iso... 484 e-137
>ref|XP_856102.1| PREDICTED: similar to 5-3 exoribonuclease 2 isoform 11 [Canis
familiaris].
Length = 914
Score = 544 bits (1401), Expect = e-155
Identities = 264/277 (95%), Positives = 265/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 277
>ref|XP_856061.1| PREDICTED: similar to Y48B6A.3 isoform 10 [Canis familiaris].
Length = 888
Score = 544 bits (1401), Expect = e-155
Identities = 264/277 (95%), Positives = 265/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 277
>ref|XP_856023.1| PREDICTED: similar to 5-3 exoribonuclease 2 isoform 9 [Canis
familiaris].
Length = 928
Score = 544 bits (1401), Expect = e-155
Identities = 264/277 (95%), Positives = 265/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 277
>ref|XP_855861.1| PREDICTED: similar to 5-3 exoribonuclease 2 isoform 5 [Canis
familiaris].
Length = 820
Score = 544 bits (1401), Expect = e-155
Identities = 264/277 (95%), Positives = 265/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 277
>ref|XP_855818.1| PREDICTED: similar to 5-3 exoribonuclease 2 (Dhm1 protein) isoform
4 [Canis familiaris].
Length = 435
Score = 544 bits (1401), Expect = e-155
Identities = 264/277 (95%), Positives = 265/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 277
>ref|XP_534324.2| PREDICTED: similar to 5-3 exoribonuclease 2 isoform 2 [Canis
familiaris].
Length = 950
Score = 544 bits (1401), Expect = e-155
Identities = 264/277 (95%), Positives = 265/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 277
>ref|XP_855734.1| PREDICTED: similar to 5-3 exoribonuclease 2 isoform 3 [Canis
familiaris].
Length = 510
Score = 544 bits (1401), Expect = e-155
Identities = 264/277 (95%), Positives = 265/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 277
>ref|XP_855901.1| PREDICTED: similar to Y48B6A.3 isoform 6 [Canis familiaris].
Length = 890
Score = 532 bits (1370), Expect = e-151
Identities = 262/280 (93%), Positives = 263/280 (93%), Gaps = 4/280 (1%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPP---EEIKERFDSNCITPGTEFMDNLAKCLRYY 606
ASKEGMEAAVEKQRVREEILAKG LPP EEIKERFDSNCITPGTEFMDNLAKCLRYY
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGKELPPSAREEIKERFDSNCITPGTEFMDNLAKCLRYY 180
Query: 607 IADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLI 786
IADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLI
Sbjct: 181 IADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLI 240
Query: 787 MLGLATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
MLGLATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 MLGLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 280
>ref|XP_855988.1| PREDICTED: similar to 5-3 exoribonuclease 2 isoform 8 [Canis
familiaris].
Length = 951
Score = 523 bits (1346), Expect = e-148
Identities = 257/278 (92%), Positives = 260/278 (93%), Gaps = 2/278 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPE-EIKERFDSNCITPGTEFMDNLAKCLRYYIA 612
ASKEGMEAAVEKQRVREEILAK + E +IKERFDSNCITPGTEFMDNLAKCLRYYIA
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKVSMIDQESKIKERFDSNCITPGTEFMDNLAKCLRYYIA 180
Query: 613 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 792
DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML
Sbjct: 181 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 240
Query: 793 GLATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
GLATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 278
>ref|XP_855947.1| PREDICTED: similar to 5-3 exoribonuclease 2 isoform 7 [Canis
familiaris].
Length = 940
Score = 484 bits (1247), Expect = e-137
Identities = 242/277 (87%), Positives = 243/277 (87%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEIL GTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEIL----------------------GTEFMDNLAKCLRYYIAD 158
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 159 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 218
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 219 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 255
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,773,906
Number of extensions: 829209
Number of successful extensions: 2330
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2302
Number of HSP's successfully gapped: 15
Length of query: 302
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 200
Effective length of database: 15,474,232
Effective search space: 3094846400
Effective search space used: 3094846400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004269
(908 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036387.2| 5'-3' exoribonuclease 2 [Homo sapiens]. 542 e-154
Alignment gi|NP_001036069.1| 5'-3' exoribonuclease 1 isoform b [Homo sapi... 251 6e-67
Alignment gi|NP_061874.3| 5'-3' exoribonuclease 1 isoform a [Homo sapiens]. 251 6e-67
>ref|NP_036387.2| 5'-3' exoribonuclease 2 [Homo sapiens].
Length = 950
Score = 542 bits (1396), Expect = e-154
Identities = 263/277 (94%), Positives = 265/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLF+IVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 277
>ref|NP_001036069.1| 5'-3' exoribonuclease 1 isoform b [Homo sapiens].
Length = 1693
Score = 251 bits (641), Expect = 6e-67
Identities = 127/258 (49%), Positives = 173/258 (67%), Gaps = 2/258 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
Query: 256 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 429
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 430 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 609
FR++KE + ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 102 FRSAKEAEDKI-------KKAIEKGETLPTEA---RFDSNCITPGTEFMARLHEHLKYFV 151
Query: 610 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 789
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 790 LGLATHEPNFTIIREEFK 843
LGL +HE +F+++REE +
Sbjct: 212 LGLTSHEAHFSLLREEVR 229
>ref|NP_061874.3| 5'-3' exoribonuclease 1 isoform a [Homo sapiens].
Length = 1706
Score = 251 bits (641), Expect = 6e-67
Identities = 127/258 (49%), Positives = 173/258 (67%), Gaps = 2/258 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
Query: 256 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 429
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 430 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 609
FR++KE + ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 102 FRSAKEAEDKI-------KKAIEKGETLPTEA---RFDSNCITPGTEFMARLHEHLKYFV 151
Query: 610 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 789
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 790 LGLATHEPNFTIIREEFK 843
LGL +HE +F+++REE +
Sbjct: 212 LGLTSHEAHFSLLREEVR 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,243,444
Number of extensions: 827869
Number of successful extensions: 2399
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2390
Number of HSP's successfully gapped: 3
Length of query: 302
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 200
Effective length of database: 14,934,836
Effective search space: 2986967200
Effective search space used: 2986967200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004269
(908 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036047.2| 5'-3' exoribonuclease 2 [Mus musculus]. 544 e-155
Alignment gi|NP_036046.2| 5'-3' exoribonuclease 1 [Mus musculus]. 251 5e-67
>ref|NP_036047.2| 5'-3' exoribonuclease 2 [Mus musculus].
Length = 951
Score = 544 bits (1402), Expect = e-155
Identities = 264/277 (95%), Positives = 266/277 (96%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P +L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCALCNQFGHEVKDCE 277
>ref|NP_036046.2| 5'-3' exoribonuclease 1 [Mus musculus].
Length = 1723
Score = 251 bits (641), Expect = 5e-67
Identities = 127/258 (49%), Positives = 173/258 (67%), Gaps = 2/258 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
Query: 256 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 429
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 430 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 609
FR++KE + ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 102 FRSAKEAEDKI-------KKAIEKGETLPTEA---RFDSNCITPGTEFMARLHEHLKYFV 151
Query: 610 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 789
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 790 LGLATHEPNFTIIREEFK 843
LGL +HE +F+++REE +
Sbjct: 212 LGLTSHEAHFSLLREEVR 229
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,368,972
Number of extensions: 704279
Number of successful extensions: 1973
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1967
Number of HSP's successfully gapped: 2
Length of query: 302
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 201
Effective length of database: 12,583,923
Effective search space: 2529368523
Effective search space used: 2529368523
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004269
(908 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134355.2| PREDICTED: 5'-3' exoribonuclease 2 [Sus scro... 544 e-155
Alignment gi|XP_001926282.2| PREDICTED: 5'-3' exoribonuclease 2-like, par... 420 e-118
Alignment gi|XP_003132505.2| PREDICTED: 5'-3' exoribonuclease 1 isoform 1... 251 4e-67
>ref|XP_003134355.2| PREDICTED: 5'-3' exoribonuclease 2 [Sus scrofa].
Length = 950
Score = 544 bits (1401), Expect = e-155
Identities = 264/277 (95%), Positives = 265/277 (95%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 256 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 435
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 436 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 615
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180
Query: 616 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 795
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
Sbjct: 181 RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG 240
Query: 796 LATHEPNFTIIREEFKTTNPTLWSL*S-IWHXVKDCE 903
LATHEPNFTIIREEFK P L + H VKDCE
Sbjct: 241 LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCE 277
>ref|XP_001926282.2| PREDICTED: 5'-3' exoribonuclease 2-like, partial [Sus scrofa].
Length = 297
Score = 420 bits (1080), Expect = e-118
Identities = 204/217 (94%), Positives = 204/217 (94%)
Frame = +1
Query: 1 SARGCLSLGLRPXXXXXXXXXXXXXMGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIP 180
SARGCLSLGLRP MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIP
Sbjct: 81 SARGCLSLGLRPSAGRAATSTCAAAMGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIP 140
Query: 181 VDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPR 360
VDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPR
Sbjct: 141 VDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPR 200
Query: 361 RLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERF 540
RLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERF
Sbjct: 201 RLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERF 260
Query: 541 DSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLT 651
DSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLT
Sbjct: 261 DSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLT 297
>ref|XP_003132505.2| PREDICTED: 5'-3' exoribonuclease 1 isoform 1, partial [Sus scrofa].
Length = 1395
Score = 251 bits (641), Expect = 4e-67
Identities = 127/258 (49%), Positives = 173/258 (67%), Gaps = 2/258 (0%)
Frame = +1
Query: 76 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 255
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
Query: 256 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 429
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 430 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 609
FR++KE + ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 102 FRSAKEAEDKI-------KKAIEKGETLPTEA---RFDSNCITPGTEFMARLHEHLKYFV 151
Query: 610 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 789
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
Query: 790 LGLATHEPNFTIIREEFK 843
LGL +HE +F+++REE +
Sbjct: 212 LGLTSHEAHFSLLREEVR 229
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,710,090
Number of extensions: 510017
Number of successful extensions: 1445
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1441
Number of HSP's successfully gapped: 3
Length of query: 302
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,904,026
Effective search space: 1816421304
Effective search space used: 1816421304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004269
(908 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 297 5e-78
>Sscrofa_Chr17
|| Length = 69701581
Score = 297 bits (150), Expect = 5e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 1 agtgcccgcggctgcttgtctcttgggttacgtccgtccgcgggcagggccgccacctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33060088 agtgcccgcggctgcttgtctcttgggttacgtccgtccgcgggcagggccgccacctcc 33060147
Query: 61 acctgcgccgctgctatgggagtcccggctttctttcgctggctcagccgcaagtacccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33060148 acctgcgccgctgctatgggagtcccggctttctttcgctggctcagccgcaagtacccg 33060207
Query: 121 tccatcattgtcaattgcgtggaagagaag 150
||||||||||||||||||||||||||||||
Sbjct: 33060208 tccatcattgtcaattgcgtggaagagaag 33060237
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 149 agccaaaagaatgcaatggcgtaaagattcctgtcgatgccagtaagcctaatccaaatg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33077645 agccaaaagaatgcaatggcgtaaagattcctgtcgatgccagtaagcctaatccaaatg 33077704
Query: 209 atgtggagtttgataatctgtatttggacatgaatggaatcatccatccctgtactcacc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33077705 atgtggagtttgataatctgtatttggacatgaatggaatcatccatccctgtactcacc 33077764
Query: 269 ctgaagacaa 278
||||||||||
Sbjct: 33077765 ctgaagacaa 33077774
Score = 228 bits (115), Expect = 4e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 390 ggcgccgcgcgctaaaatgaaccagcagcgttcaaggaggttcagagcatccaaagaagg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33081006 ggcgccgcgcgctaaaatgaaccagcagcgttcaaggaggttcagagcatccaaagaagg 33081065
Query: 450 aatggaagcagcagtagagaagcagcgagtcagggaagaaatactggcaaaaggt 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33081066 aatggaagcagcagtagagaagcagcgagtcagggaagaaatactggcaaaaggt 33081120
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 279 accagcgcccaaaaacgaggatgaaatgatggttgcaatttttgaatacattgaccgact 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33077857 accagcgcccaaaaacgaggatgaaatgatggttgcaatttttgaatacattgaccgact 33077916
Query: 339 tttcaatattgtgagaccaagacgacttctctacatggcaatagatggagtgg 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33077917 tttcaatattgtgagaccaagacgacttctctacatggcaatagatggagtgg 33077969
Score = 194 bits (98), Expect = 6e-47
Identities = 127/133 (95%), Gaps = 3/133 (2%)
Strand = Plus / Plus
Query: 775 gctgatctcattatgctcggccttgctacacacgaacccaactttaccattatcagagaa 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33084777 gctgatctcattatgctcggccttgctacacacgaacccaactttaccattatcagagaa 33084836
Query: 835 gaattcaaaac-aacaaaccc-aaccctgtggtctttgtaatcaatttgg-catgnagtc 891
||||||||| | ||||||||| |||||||||||||||||||||||||||| |||| |||
Sbjct: 33084837 gaattcaaaccaaacaaacccaaaccctgtggtctttgtaatcaatttggacatgaggtc 33084896
Query: 892 aaggactgtgaag 904
|||||||||||||
Sbjct: 33084897 aaggactgtgaag 33084909
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 562 ggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgatcgttta 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33082729 ggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgatcgttta 33082788
Query: 622 aataatgaccccgggtggaaaaatctgacagt 653
||||||||||||||||||||||||||||||||
Sbjct: 33082789 aataatgaccccgggtggaaaaatctgacagt 33082820
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 652 gttattttgtctgatgctagtgctcctggtgaaggggaacataaaatcatggattacatt 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33083843 gttattttgtctgatgctagtgctcctggtgaaggggaacataaaatcatggattacatt 33083902
Query: 712 agaagacagagag 724
|||||||||||||
Sbjct: 33083903 agaagacagagag 33083915
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 501 aggtggcttccttcctccagaagaaataaaagagagatttgacagcaactgtattacacc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33082592 aggtggcttccttcctccagaagaaataaaagagagatttgacagcaactgtattacacc 33082651
Query: 561 ag 562
||
Sbjct: 33082652 ag 33082653
Score = 105 bits (53), Expect = 4e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 723 agcccagcctaaccatgacccaaacactcatcattgcttgtgtggagcagatg 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33084051 agcccagcctaaccatgacccaaacactcatcattgcttgtgtggagcagatg 33084103
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,506,408
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 9
Length of query: 908
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 887
Effective length of database: 2,808,413,156
Effective search space: 2491062469372
Effective search space used: 2491062469372
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)