Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004277
(1072 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039632.1| probable palmitoyltransferase ZDHHC6 [Bos ta... 258 6e-69
>ref|NP_001039632.1| probable palmitoyltransferase ZDHHC6 [Bos taurus].
Length = 413
Score = 258 bits (659), Expect = 6e-69
Identities = 115/119 (96%), Positives = 118/119 (99%)
Frame = +3
Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
MGTFCSV++FENLQELKRLCHWGPIIALGVIAICS MAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1 MGTFCSVVKFENLQELKRLCHWGPIIALGVIAICSAMAMIDSVLWYWPLHTTGGSVNFIM 60
Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDS+YLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSVYLQYCKVCQAYKAPRSHHCRKCN 119
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,110,775
Number of extensions: 1074492
Number of successful extensions: 2707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2706
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 254
Effective length of database: 14,273,310
Effective search space: 3625420740
Effective search space used: 3625420740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004277
(1072 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535015.2| PREDICTED: similar to zinc finger, DHHC domain ... 259 4e-69
>ref|XP_535015.2| PREDICTED: similar to zinc finger, DHHC domain containing 6 [Canis
familiaris].
Length = 413
Score = 259 bits (661), Expect = 4e-69
Identities = 116/119 (97%), Positives = 118/119 (99%)
Frame = +3
Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
M TFCSVI+FENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1 MDTFCSVIKFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60
Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
LINWTVMILYNYFNAMF+GPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61 LINWTVMILYNYFNAMFIGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 119
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,282,604
Number of extensions: 880033
Number of successful extensions: 2736
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2730
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 253
Effective length of database: 15,407,560
Effective search space: 3898112680
Effective search space used: 3898112680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004277
(1072 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071939.1| probable palmitoyltransferase ZDHHC6 [Homo sapi... 257 1e-68
>ref|NP_071939.1| probable palmitoyltransferase ZDHHC6 [Homo sapiens].
Length = 413
Score = 257 bits (657), Expect = 1e-68
Identities = 116/119 (97%), Positives = 118/119 (99%)
Frame = +3
Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
MGTFCSVI+FENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1 MGTFCSVIKFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60
Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
LINWTVMILYNYFNAMFVGPGFVPLGWKPE SQD+MYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61 LINWTVMILYNYFNAMFVGPGFVPLGWKPEISQDTMYLQYCKVCQAYKAPRSHHCRKCN 119
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,707,953
Number of extensions: 856036
Number of successful extensions: 2656
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2655
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 253
Effective length of database: 14,868,908
Effective search space: 3761833724
Effective search space used: 3761833724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004277
(1072 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028745.1| probable palmitoyltransferase ZDHHC6 [Mus mu... 251 7e-67
Alignment gi|NP_080159.3| probable palmitoyltransferase ZDHHC6 [Mus muscu... 251 7e-67
>ref|NP_001028745.1| probable palmitoyltransferase ZDHHC6 [Mus musculus].
Length = 413
Score = 251 bits (641), Expect = 7e-67
Identities = 112/119 (94%), Positives = 115/119 (96%)
Frame = +3
Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
MG FCSVI+FENLQ+L+RLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1 MGIFCSVIKFENLQDLRRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60
Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
LINWTVMILYNYFNAMF GPGFVP GWKPE SQDSMYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61 LINWTVMILYNYFNAMFAGPGFVPRGWKPEKSQDSMYLQYCKVCQAYKAPRSHHCRKCN 119
>ref|NP_080159.3| probable palmitoyltransferase ZDHHC6 [Mus musculus].
Length = 413
Score = 251 bits (641), Expect = 7e-67
Identities = 112/119 (94%), Positives = 115/119 (96%)
Frame = +3
Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
MG FCSVI+FENLQ+L+RLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1 MGIFCSVIKFENLQDLRRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60
Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
LINWTVMILYNYFNAMF GPGFVP GWKPE SQDSMYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61 LINWTVMILYNYFNAMFAGPGFVPRGWKPEKSQDSMYLQYCKVCQAYKAPRSHHCRKCN 119
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,847,610
Number of extensions: 737776
Number of successful extensions: 2183
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2181
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 255
Effective length of database: 12,553,887
Effective search space: 3201241185
Effective search space used: 3201241185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004277
(1072 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928365.1| PREDICTED: probable palmitoyltransferase ZDH... 263 1e-70
Alignment gi|XP_001928165.1| PREDICTED: probable palmitoyltransferase ZDH... 263 1e-70
>ref|XP_001928365.1| PREDICTED: probable palmitoyltransferase ZDHHC6-like [Sus scrofa].
Length = 413
Score = 263 bits (672), Expect = 1e-70
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60
Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 119
>ref|XP_001928165.1| PREDICTED: probable palmitoyltransferase ZDHHC6-like [Sus scrofa].
Length = 413
Score = 263 bits (672), Expect = 1e-70
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60
Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 119
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,955,032
Number of extensions: 1040150
Number of successful extensions: 1723
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1721
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,854,232
Effective search space: 2275537624
Effective search space used: 2275537624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004277
(1072 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 946 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 946 bits (477), Expect = 0.0
Identities = 477/477 (100%)
Strand = Plus / Plus
Query: 223 agattgggcttcaaatcaagacactgcattctcctagaaaagacaaagagtttgtaacgg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134029911 agattgggcttcaaatcaagacactgcattctcctagaaaagacaaagagtttgtaacgg 134029970
Query: 283 tgaacatggtgtaatctgcattaacatcccacaccatgaaggcatgacaattaaggaaca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134029971 tgaacatggtgtaatctgcattaacatcccacaccatgaaggcatgacaattaaggaaca 134030030
Query: 343 catgtggacttgtggcacatggaaatgtgtgcacagaaaaaagaaatctgtaattcttta 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030031 catgtggacttgtggcacatggaaatgtgtgcacagaaaaaagaaatctgtaattcttta 134030090
Query: 403 aaaacaggaaggtgttcttcctcaccaaaatgggtacattctgctcagtcatcaggtttg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030091 aaaacaggaaggtgttcttcctcaccaaaatgggtacattctgctcagtcatcaggtttg 134030150
Query: 463 aaaatctccaagaattaaagagactttgtcactggggtcccattatagcccttggtgtta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030151 aaaatctccaagaattaaagagactttgtcactggggtcccattatagcccttggtgtta 134030210
Query: 523 tagcaatatgttctaccatggccatgattgactctgttttgtggtattggcccttacata 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030211 tagcaatatgttctaccatggccatgattgactctgttttgtggtattggcccttacata 134030270
Query: 583 ccactggaggaagcgtgaatttcatcatgttgataaattggactgtcatgattctttata 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030271 ccactggaggaagcgtgaatttcatcatgttgataaattggactgtcatgattctttata 134030330
Query: 643 attatttcaatgccatgtttgttggtcctggcttcgtccctctggggtggaaaccgg 699
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030331 attatttcaatgccatgtttgttggtcctggcttcgtccctctggggtggaaaccgg 134030387
Score = 938 bits (473), Expect = 0.0
Identities = 476/477 (99%)
Strand = Plus / Minus
Query: 223 agattgggcttcaaatcaagacactgcattctcctagaaaagacaaagagtttgtaacgg 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770799 agattgggcttcaaatcaagacactgcattctcctagaaaagacaaagagtttgtaacgc 133770740
Query: 283 tgaacatggtgtaatctgcattaacatcccacaccatgaaggcatgacaattaaggaaca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770739 tgaacatggtgtaatctgcattaacatcccacaccatgaaggcatgacaattaaggaaca 133770680
Query: 343 catgtggacttgtggcacatggaaatgtgtgcacagaaaaaagaaatctgtaattcttta 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770679 catgtggacttgtggcacatggaaatgtgtgcacagaaaaaagaaatctgtaattcttta 133770620
Query: 403 aaaacaggaaggtgttcttcctcaccaaaatgggtacattctgctcagtcatcaggtttg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770619 aaaacaggaaggtgttcttcctcaccaaaatgggtacattctgctcagtcatcaggtttg 133770560
Query: 463 aaaatctccaagaattaaagagactttgtcactggggtcccattatagcccttggtgtta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770559 aaaatctccaagaattaaagagactttgtcactggggtcccattatagcccttggtgtta 133770500
Query: 523 tagcaatatgttctaccatggccatgattgactctgttttgtggtattggcccttacata 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770499 tagcaatatgttctaccatggccatgattgactctgttttgtggtattggcccttacata 133770440
Query: 583 ccactggaggaagcgtgaatttcatcatgttgataaattggactgtcatgattctttata 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770439 ccactggaggaagcgtgaatttcatcatgttgataaattggactgtcatgattctttata 133770380
Query: 643 attatttcaatgccatgtttgttggtcctggcttcgtccctctggggtggaaaccgg 699
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770379 attatttcaatgccatgtttgttggtcctggcttcgtccctctggggtggaaaccgg 133770323
Score = 444 bits (224), Expect = e-122
Identities = 224/224 (100%)
Strand = Plus / Plus
Query: 1 gactgcgcagtgggcctgagcgggagagccgcggcgagggcgctggcggagaagcagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134028672 gactgcgcagtgggcctgagcgggagagccgcggcgagggcgctggcggagaagcagcag 134028731
Query: 61 cgtcgtggctgatctcgcactgcacgcaggatttgctttcttcttacgctgggctggggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134028732 cgtcgtggctgatctcgcactgcacgcaggatttgctttcttcttacgctgggctggggg 134028791
Query: 121 gcccaggacggagttatccgagcaggagaaaacctgcttggggtgagctcgggccgcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134028792 gcccaggacggagttatccgagcaggagaaaacctgcttggggtgagctcgggccgcccc 134028851
Query: 181 ggaaatgcgatggccgaggagcaggcactgaggaccagaccgag 224
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134028852 ggaaatgcgatggccgaggagcaggcactgaggaccagaccgag 134028895
Score = 436 bits (220), Expect = e-119
Identities = 223/224 (99%)
Strand = Plus / Minus
Query: 1 gactgcgcagtgggcctgagcgggagagccgcggcgagggcgctggcggagaagcagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133772038 gactgcgcagtgggcctgagcgggagagccgcggcgagggcgctggcggagaagcagcag 133771979
Query: 61 cgtcgtggctgatctcgcactgcacgcaggatttgctttcttcttacgctgggctggggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133771978 cgtcgtggctgatctcgcactgcacgcaggatttgctttcttcttacgctgggctggggg 133771919
Query: 121 gcccaggacggagttatccgagcaggagaaaacctgcttggggtgagctcgggccgcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133771918 gcccaggacggagttatccgagcaggagaaaacctgcttggggtgagctcgggccgcccc 133771859
Query: 181 ggaaatgcgatggccgaggagcaggcactgaggaccagaccgag 224
|||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 133771858 ggaaatgcgatggccgaggagcaggcgctgaggaccagaccgag 133771815
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 698 ggaaaattctcaggatagcatgtacctccagtattgtaaagtctgccaagcatacaaggc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133769681 ggaaaattctcaggatagcatgtacctccagtattgtaaagtctgccaagcatacaaggc 133769622
Query: 758 accacggtcacatcactgcagaaagtgtaac 788
|||||||||||||||||||||||||||||||
Sbjct: 133769621 accacggtcacatcactgcagaaagtgtaac 133769591
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 698 ggaaaattctcaggatagcatgtacctccagtattgtaaagtctgccaagcatacaaggc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134031032 ggaaaattctcaggatagcatgtacctccagtattgtaaagtctgccaagcatacaaggc 134031091
Query: 758 accacggtcacatcactgcagaaagtgtaac 788
|||||||||||||||||||||||||||||||
Sbjct: 134031092 accacggtcacatcactgcagaaagtgtaac 134031122
Score = 101 bits (51), Expect = 8e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 1022 tagatgtgtgatgaagatggaccatcactgtccttggatcaacaactgctg 1072
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133768081 tagatgtgtgatgaagatggaccatcactgtccttggatcaacaactgctg 133768031
Score = 101 bits (51), Expect = 8e-19
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 1022 tagatgtgtgatgaagatggaccatcactgtccttggatcaacaactgctg 1072
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134032633 tagatgtgtgatgaagatggaccatcactgtccttggatcaacaactgctg 134032683
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,928,400
Number of extensions: 257
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 8
Length of query: 1072
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1051
Effective length of database: 2,808,413,156
Effective search space: 2951642226956
Effective search space used: 2951642226956
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)