Animal-Genome cDNA 20110601C-004277


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004277
         (1072 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039632.1| probable palmitoyltransferase ZDHHC6 [Bos ta...   258   6e-69

>ref|NP_001039632.1| probable palmitoyltransferase ZDHHC6 [Bos taurus].
          Length = 413

 Score =  258 bits (659), Expect = 6e-69
 Identities = 115/119 (96%), Positives = 118/119 (99%)
 Frame = +3

Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
           MGTFCSV++FENLQELKRLCHWGPIIALGVIAICS MAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1   MGTFCSVVKFENLQELKRLCHWGPIIALGVIAICSAMAMIDSVLWYWPLHTTGGSVNFIM 60

Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
           LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDS+YLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61  LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSVYLQYCKVCQAYKAPRSHHCRKCN 119


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,110,775
Number of extensions: 1074492
Number of successful extensions: 2707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2706
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 254
Effective length of database: 14,273,310
Effective search space: 3625420740
Effective search space used: 3625420740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004277
         (1072 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535015.2| PREDICTED: similar to zinc finger, DHHC domain ...   259   4e-69

>ref|XP_535015.2| PREDICTED: similar to zinc finger, DHHC domain containing 6 [Canis
           familiaris].
          Length = 413

 Score =  259 bits (661), Expect = 4e-69
 Identities = 116/119 (97%), Positives = 118/119 (99%)
 Frame = +3

Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
           M TFCSVI+FENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1   MDTFCSVIKFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60

Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
           LINWTVMILYNYFNAMF+GPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61  LINWTVMILYNYFNAMFIGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 119


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,282,604
Number of extensions: 880033
Number of successful extensions: 2736
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2730
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 253
Effective length of database: 15,407,560
Effective search space: 3898112680
Effective search space used: 3898112680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004277
         (1072 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_071939.1| probable palmitoyltransferase ZDHHC6 [Homo sapi...   257   1e-68

>ref|NP_071939.1| probable palmitoyltransferase ZDHHC6 [Homo sapiens].
          Length = 413

 Score =  257 bits (657), Expect = 1e-68
 Identities = 116/119 (97%), Positives = 118/119 (99%)
 Frame = +3

Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
           MGTFCSVI+FENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1   MGTFCSVIKFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60

Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
           LINWTVMILYNYFNAMFVGPGFVPLGWKPE SQD+MYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61  LINWTVMILYNYFNAMFVGPGFVPLGWKPEISQDTMYLQYCKVCQAYKAPRSHHCRKCN 119


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,707,953
Number of extensions: 856036
Number of successful extensions: 2656
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2655
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 253
Effective length of database: 14,868,908
Effective search space: 3761833724
Effective search space used: 3761833724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004277
         (1072 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001028745.1| probable palmitoyltransferase ZDHHC6 [Mus mu...   251   7e-67
Alignment   gi|NP_080159.3| probable palmitoyltransferase ZDHHC6 [Mus muscu...   251   7e-67

>ref|NP_001028745.1| probable palmitoyltransferase ZDHHC6 [Mus musculus].
          Length = 413

 Score =  251 bits (641), Expect = 7e-67
 Identities = 112/119 (94%), Positives = 115/119 (96%)
 Frame = +3

Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
           MG FCSVI+FENLQ+L+RLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1   MGIFCSVIKFENLQDLRRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60

Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
           LINWTVMILYNYFNAMF GPGFVP GWKPE SQDSMYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61  LINWTVMILYNYFNAMFAGPGFVPRGWKPEKSQDSMYLQYCKVCQAYKAPRSHHCRKCN 119


>ref|NP_080159.3| probable palmitoyltransferase ZDHHC6 [Mus musculus].
          Length = 413

 Score =  251 bits (641), Expect = 7e-67
 Identities = 112/119 (94%), Positives = 115/119 (96%)
 Frame = +3

Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
           MG FCSVI+FENLQ+L+RLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1   MGIFCSVIKFENLQDLRRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60

Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
           LINWTVMILYNYFNAMF GPGFVP GWKPE SQDSMYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61  LINWTVMILYNYFNAMFAGPGFVPRGWKPEKSQDSMYLQYCKVCQAYKAPRSHHCRKCN 119


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,847,610
Number of extensions: 737776
Number of successful extensions: 2183
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2181
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 255
Effective length of database: 12,553,887
Effective search space: 3201241185
Effective search space used: 3201241185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004277
         (1072 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001928365.1| PREDICTED: probable palmitoyltransferase ZDH...   263   1e-70
Alignment   gi|XP_001928165.1| PREDICTED: probable palmitoyltransferase ZDH...   263   1e-70

>ref|XP_001928365.1| PREDICTED: probable palmitoyltransferase ZDHHC6-like [Sus scrofa].
          Length = 413

 Score =  263 bits (672), Expect = 1e-70
 Identities = 119/119 (100%), Positives = 119/119 (100%)
 Frame = +3

Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
           MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1   MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60

Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
           LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61  LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 119


>ref|XP_001928165.1| PREDICTED: probable palmitoyltransferase ZDHHC6-like [Sus scrofa].
          Length = 413

 Score =  263 bits (672), Expect = 1e-70
 Identities = 119/119 (100%), Positives = 119/119 (100%)
 Frame = +3

Query: 432 MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 611
           MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM
Sbjct: 1   MGTFCSVIRFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIM 60

Query: 612 LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 788
           LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN
Sbjct: 61  LINWTVMILYNYFNAMFVGPGFVPLGWKPENSQDSMYLQYCKVCQAYKAPRSHHCRKCN 119


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,955,032
Number of extensions: 1040150
Number of successful extensions: 1723
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1721
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,854,232
Effective search space: 2275537624
Effective search space used: 2275537624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004277
         (1072 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         946   0.0  

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  946 bits (477), Expect = 0.0
 Identities = 477/477 (100%)
 Strand = Plus / Plus

                                                                             
Query: 223       agattgggcttcaaatcaagacactgcattctcctagaaaagacaaagagtttgtaacgg 282
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134029911 agattgggcttcaaatcaagacactgcattctcctagaaaagacaaagagtttgtaacgg 134029970

                                                                             
Query: 283       tgaacatggtgtaatctgcattaacatcccacaccatgaaggcatgacaattaaggaaca 342
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134029971 tgaacatggtgtaatctgcattaacatcccacaccatgaaggcatgacaattaaggaaca 134030030

                                                                             
Query: 343       catgtggacttgtggcacatggaaatgtgtgcacagaaaaaagaaatctgtaattcttta 402
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030031 catgtggacttgtggcacatggaaatgtgtgcacagaaaaaagaaatctgtaattcttta 134030090

                                                                             
Query: 403       aaaacaggaaggtgttcttcctcaccaaaatgggtacattctgctcagtcatcaggtttg 462
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030091 aaaacaggaaggtgttcttcctcaccaaaatgggtacattctgctcagtcatcaggtttg 134030150

                                                                             
Query: 463       aaaatctccaagaattaaagagactttgtcactggggtcccattatagcccttggtgtta 522
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030151 aaaatctccaagaattaaagagactttgtcactggggtcccattatagcccttggtgtta 134030210

                                                                             
Query: 523       tagcaatatgttctaccatggccatgattgactctgttttgtggtattggcccttacata 582
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030211 tagcaatatgttctaccatggccatgattgactctgttttgtggtattggcccttacata 134030270

                                                                             
Query: 583       ccactggaggaagcgtgaatttcatcatgttgataaattggactgtcatgattctttata 642
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030271 ccactggaggaagcgtgaatttcatcatgttgataaattggactgtcatgattctttata 134030330

                                                                          
Query: 643       attatttcaatgccatgtttgttggtcctggcttcgtccctctggggtggaaaccgg 699
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134030331 attatttcaatgccatgtttgttggtcctggcttcgtccctctggggtggaaaccgg 134030387



 Score =  938 bits (473), Expect = 0.0
 Identities = 476/477 (99%)
 Strand = Plus / Minus

                                                                             
Query: 223       agattgggcttcaaatcaagacactgcattctcctagaaaagacaaagagtttgtaacgg 282
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 133770799 agattgggcttcaaatcaagacactgcattctcctagaaaagacaaagagtttgtaacgc 133770740

                                                                             
Query: 283       tgaacatggtgtaatctgcattaacatcccacaccatgaaggcatgacaattaaggaaca 342
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770739 tgaacatggtgtaatctgcattaacatcccacaccatgaaggcatgacaattaaggaaca 133770680

                                                                             
Query: 343       catgtggacttgtggcacatggaaatgtgtgcacagaaaaaagaaatctgtaattcttta 402
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770679 catgtggacttgtggcacatggaaatgtgtgcacagaaaaaagaaatctgtaattcttta 133770620

                                                                             
Query: 403       aaaacaggaaggtgttcttcctcaccaaaatgggtacattctgctcagtcatcaggtttg 462
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770619 aaaacaggaaggtgttcttcctcaccaaaatgggtacattctgctcagtcatcaggtttg 133770560

                                                                             
Query: 463       aaaatctccaagaattaaagagactttgtcactggggtcccattatagcccttggtgtta 522
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770559 aaaatctccaagaattaaagagactttgtcactggggtcccattatagcccttggtgtta 133770500

                                                                             
Query: 523       tagcaatatgttctaccatggccatgattgactctgttttgtggtattggcccttacata 582
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770499 tagcaatatgttctaccatggccatgattgactctgttttgtggtattggcccttacata 133770440

                                                                             
Query: 583       ccactggaggaagcgtgaatttcatcatgttgataaattggactgtcatgattctttata 642
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770439 ccactggaggaagcgtgaatttcatcatgttgataaattggactgtcatgattctttata 133770380

                                                                          
Query: 643       attatttcaatgccatgtttgttggtcctggcttcgtccctctggggtggaaaccgg 699
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133770379 attatttcaatgccatgtttgttggtcctggcttcgtccctctggggtggaaaccgg 133770323



 Score =  444 bits (224), Expect = e-122
 Identities = 224/224 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         gactgcgcagtgggcctgagcgggagagccgcggcgagggcgctggcggagaagcagcag 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134028672 gactgcgcagtgggcctgagcgggagagccgcggcgagggcgctggcggagaagcagcag 134028731

                                                                             
Query: 61        cgtcgtggctgatctcgcactgcacgcaggatttgctttcttcttacgctgggctggggg 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134028732 cgtcgtggctgatctcgcactgcacgcaggatttgctttcttcttacgctgggctggggg 134028791

                                                                             
Query: 121       gcccaggacggagttatccgagcaggagaaaacctgcttggggtgagctcgggccgcccc 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134028792 gcccaggacggagttatccgagcaggagaaaacctgcttggggtgagctcgggccgcccc 134028851

                                                             
Query: 181       ggaaatgcgatggccgaggagcaggcactgaggaccagaccgag 224
                 ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134028852 ggaaatgcgatggccgaggagcaggcactgaggaccagaccgag 134028895



 Score =  436 bits (220), Expect = e-119
 Identities = 223/224 (99%)
 Strand = Plus / Minus

                                                                             
Query: 1         gactgcgcagtgggcctgagcgggagagccgcggcgagggcgctggcggagaagcagcag 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133772038 gactgcgcagtgggcctgagcgggagagccgcggcgagggcgctggcggagaagcagcag 133771979

                                                                             
Query: 61        cgtcgtggctgatctcgcactgcacgcaggatttgctttcttcttacgctgggctggggg 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133771978 cgtcgtggctgatctcgcactgcacgcaggatttgctttcttcttacgctgggctggggg 133771919

                                                                             
Query: 121       gcccaggacggagttatccgagcaggagaaaacctgcttggggtgagctcgggccgcccc 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133771918 gcccaggacggagttatccgagcaggagaaaacctgcttggggtgagctcgggccgcccc 133771859

                                                             
Query: 181       ggaaatgcgatggccgaggagcaggcactgaggaccagaccgag 224
                 |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 133771858 ggaaatgcgatggccgaggagcaggcgctgaggaccagaccgag 133771815



 Score =  180 bits (91), Expect = 1e-42
 Identities = 91/91 (100%)
 Strand = Plus / Minus

                                                                             
Query: 698       ggaaaattctcaggatagcatgtacctccagtattgtaaagtctgccaagcatacaaggc 757
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133769681 ggaaaattctcaggatagcatgtacctccagtattgtaaagtctgccaagcatacaaggc 133769622

                                                
Query: 758       accacggtcacatcactgcagaaagtgtaac 788
                 |||||||||||||||||||||||||||||||
Sbjct: 133769621 accacggtcacatcactgcagaaagtgtaac 133769591



 Score =  180 bits (91), Expect = 1e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                             
Query: 698       ggaaaattctcaggatagcatgtacctccagtattgtaaagtctgccaagcatacaaggc 757
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134031032 ggaaaattctcaggatagcatgtacctccagtattgtaaagtctgccaagcatacaaggc 134031091

                                                
Query: 758       accacggtcacatcactgcagaaagtgtaac 788
                 |||||||||||||||||||||||||||||||
Sbjct: 134031092 accacggtcacatcactgcagaaagtgtaac 134031122



 Score =  101 bits (51), Expect = 8e-19
 Identities = 51/51 (100%)
 Strand = Plus / Minus

                                                                    
Query: 1022      tagatgtgtgatgaagatggaccatcactgtccttggatcaacaactgctg 1072
                 |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133768081 tagatgtgtgatgaagatggaccatcactgtccttggatcaacaactgctg 133768031



 Score =  101 bits (51), Expect = 8e-19
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                                    
Query: 1022      tagatgtgtgatgaagatggaccatcactgtccttggatcaacaactgctg 1072
                 |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134032633 tagatgtgtgatgaagatggaccatcactgtccttggatcaacaactgctg 134032683


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,928,400
Number of extensions: 257
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 8
Length of query: 1072
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1051
Effective length of database: 2,808,413,156
Effective search space: 2951642226956
Effective search space used: 2951642226956
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)