Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004278
(668 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776731.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 283 1e-76
>ref|NP_776731.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Bos
taurus].
Length = 145
Score = 283 bits (723), Expect = 1e-76
Identities = 128/145 (88%), Positives = 134/145 (92%)
Frame = +3
Query: 90 MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR 269
MEL+QVL+RGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR
Sbjct: 1 MELLQVLKRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR 60
Query: 270 WVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCMXXXXXXXXXXXARKYIWTNHKFNVSGT 449
WVIYTTEMNG++TFWDVDGSMVPPEWHRWLHCM ARK+IWTNHKFN+SGT
Sbjct: 61 WVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGT 120
Query: 450 PQQYVPYSTTRKKIQEWVPPSTPYK 524
PQQYVPYSTTRKKIQEWVPPSTPYK
Sbjct: 121 PQQYVPYSTTRKKIQEWVPPSTPYK 145
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,100,884
Number of extensions: 565585
Number of successful extensions: 2205
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2195
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 124
Effective length of database: 14,438,750
Effective search space: 1790405000
Effective search space used: 1790405000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004278
(668 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532652.1| PREDICTED: similar to 13kDa differentiation-ass... 278 2e-75
>ref|XP_532652.1| PREDICTED: similar to 13kDa differentiation-associated protein
[Canis familiaris].
Length = 145
Score = 278 bits (712), Expect = 2e-75
Identities = 125/145 (86%), Positives = 132/145 (91%)
Frame = +3
Query: 90 MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR 269
MEL+QVL+RGLQQVSGHGGLRGYLRV FR NDVRVGTLVGEDKYGNKYYEDNKQFFGRHR
Sbjct: 1 MELLQVLKRGLQQVSGHGGLRGYLRVFFRTNDVRVGTLVGEDKYGNKYYEDNKQFFGRHR 60
Query: 270 WVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCMXXXXXXXXXXXARKYIWTNHKFNVSGT 449
WVIYTTEMNG++TFWDVDGSMVPPEWHRWLHCM ARK+IWTNHKFNVSGT
Sbjct: 61 WVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPVARKFIWTNHKFNVSGT 120
Query: 450 PQQYVPYSTTRKKIQEWVPPSTPYK 524
P+QYVPYSTTRKKIQEWVPP+TPYK
Sbjct: 121 PEQYVPYSTTRKKIQEWVPPATPYK 145
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,892,639
Number of extensions: 548467
Number of successful extensions: 2174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2172
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 123
Effective length of database: 15,574,240
Effective search space: 1915631520
Effective search space used: 1915631520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004278
(668 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061326.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 271 5e-73
>ref|NP_061326.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Homo
sapiens].
Length = 145
Score = 271 bits (692), Expect = 5e-73
Identities = 119/145 (82%), Positives = 130/145 (89%)
Frame = +3
Query: 90 MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR 269
MELVQVL+RGLQQ++GHGGLRGYLRV FR ND +VGTLVGEDKYGNKYYEDNKQFFGRHR
Sbjct: 1 MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHR 60
Query: 270 WVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCMXXXXXXXXXXXARKYIWTNHKFNVSGT 449
WV+YTTEMNG++TFWDVDGSMVPPEWHRWLH M ARK+IWTNHKFNV+GT
Sbjct: 61 WVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGT 120
Query: 450 PQQYVPYSTTRKKIQEWVPPSTPYK 524
P+QYVPYSTTRKKIQEW+PPSTPYK
Sbjct: 121 PEQYVPYSTTRKKIQEWIPPSTPYK 145
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 22,433,231
Number of extensions: 535594
Number of successful extensions: 2207
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2194
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 123
Effective length of database: 15,033,728
Effective search space: 1849148544
Effective search space used: 1849148544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004278
(668 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079827.2| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 271 2e-73
>ref|NP_079827.2| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Mus
musculus].
Length = 149
Score = 271 bits (694), Expect = 2e-73
Identities = 120/146 (82%), Positives = 131/146 (89%)
Frame = +3
Query: 87 KMELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRH 266
+MELV+VL+RG+QQV+GHGGLRG LRV FRAND+R+GTLVGEDKYGNKYYEDNKQFFGRH
Sbjct: 4 RMELVEVLKRGVQQVTGHGGLRGLLRVFFRANDIRIGTLVGEDKYGNKYYEDNKQFFGRH 63
Query: 267 RWVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCMXXXXXXXXXXXARKYIWTNHKFNVSG 446
RWVIYTTEMNG++TFWDVDGSMVPPEWHRWLHCM ARK+IWTNHKFNVS
Sbjct: 64 RWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPTARKFIWTNHKFNVSA 123
Query: 447 TPQQYVPYSTTRKKIQEWVPPSTPYK 524
TP+QYVPYSTTRKKI EWVPPSTPYK
Sbjct: 124 TPEQYVPYSTTRKKIHEWVPPSTPYK 149
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,013,927
Number of extensions: 452519
Number of successful extensions: 1683
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1679
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 125
Effective length of database: 12,704,067
Effective search space: 1588008375
Effective search space used: 1588008375
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004278
(668 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126763.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 291 3e-79
Alignment gi|XP_003126764.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 186 1e-47
>ref|XP_003126763.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 12-like isoform 1 [Sus scrofa].
Length = 145
Score = 291 bits (744), Expect = 3e-79
Identities = 134/145 (92%), Positives = 134/145 (92%)
Frame = +3
Query: 90 MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR 269
MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR
Sbjct: 1 MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR 60
Query: 270 WVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCMXXXXXXXXXXXARKYIWTNHKFNVSGT 449
WVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCM ARKYIWTNHKFNVSGT
Sbjct: 61 WVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCMTDDPPTTKPPTARKYIWTNHKFNVSGT 120
Query: 450 PQQYVPYSTTRKKIQEWVPPSTPYK 524
PQQYVPYSTTRKKIQEWVPPSTPYK
Sbjct: 121 PQQYVPYSTTRKKIQEWVPPSTPYK 145
>ref|XP_003126764.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 12-like isoform 2 [Sus scrofa].
Length = 113
Score = 186 bits (472), Expect = 1e-47
Identities = 86/86 (100%), Positives = 86/86 (100%)
Frame = +3
Query: 90 MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR 269
MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR
Sbjct: 1 MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHR 60
Query: 270 WVIYTTEMNGRDTFWDVDGSMVPPEW 347
WVIYTTEMNGRDTFWDVDGSMVPPEW
Sbjct: 61 WVIYTTEMNGRDTFWDVDGSMVPPEW 86
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,577,531
Number of extensions: 418004
Number of successful extensions: 1409
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1407
Number of HSP's successfully gapped: 2
Length of query: 222
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 127
Effective length of database: 8,978,717
Effective search space: 1140297059
Effective search space used: 1140297059
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004278
(668 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 543 e-152
>Sscrofa_Chr05
|| Length = 111506441
Score = 543 bits (274), Expect = e-152
Identities = 277/278 (99%)
Strand = Plus / Plus
Query: 346 ggcatcgttggcttcattgtatgactgatgatcctccaacaacaaaaccacctactgctc 405
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92663743 ggcatcgttggcttcactgtatgactgatgatcctccaacaacaaaaccacctactgctc 92663802
Query: 406 gtaaatacatttggacaaaccataaattcaacgtgagtggcactccacagcagtacgtac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92663803 gtaaatacatttggacaaaccataaattcaacgtgagtggcactccacagcagtacgtac 92663862
Query: 466 cctattccaccactagaaagaagattcaggagtgggtcccaccttcaacaccttacaagt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92663863 cctattccaccactagaaagaagattcaggagtgggtcccaccttcaacaccttacaagt 92663922
Query: 526 aaagagaacgaaaaacaatttaaagatgtaaaataagaggcttttcctataattgcgcct 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92663923 aaagagaacgaaaaacaatttaaagatgtaaaataagaggcttttcctataattgcgcct 92663982
Query: 586 tcattacttactgttaccttgattaaaattatttgatt 623
||||||||||||||||||||||||||||||||||||||
Sbjct: 92663983 tcattacttactgttaccttgattaaaattatttgatt 92664020
Score = 525 bits (265), Expect = e-147
Identities = 463/529 (87%), Gaps = 10/529 (1%)
Strand = Plus / Plus
Query: 104 ggtcctgaggcgcgggctgcagcaggtcagcggccacggcggcctccgcggctacctacg 163
|||||||| |||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct: 68138260 ggtcctgaagcgcgggctgcagcaggtcagcggccccggcgggctccgcggctcgctata 68138319
Query: 164 ggttctcttcagggcaaacgatgtgagagttggaaccttagtaggggaggacaaatacgg 223
|||||||||||||||| | || ||||||||||| || ||||||||| |||||||| ||
Sbjct: 68138320 ggttctcttcagggcagatgaggtgagagttggtacgcgagtaggggaagacaaatatgg 68138379
Query: 224 aaacaaatactatgaagacaacaagcagttttttggccgtcaccggtgggttatatatac 283
|||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 68138380 aaacaaataccatgaagacagcaagcagttttttggccatcacca-tgggttatacatac 68138438
Query: 284 tactgagatgaatggcagagacaccttctgggatgtagatggaagcatggtgcccccgga 343
||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||
Sbjct: 68138439 tactgagatgaatggcaaaaacacgttctgggatgtagatggaagcatggtgccccctga 68138498
Query: 344 atggcatcgttggc---------ttcattgtatgactgatgatcctccaacaacaaaacc 394
||||||||| |||| |||| ||||||| |||||||||||||||||| | |||
Sbjct: 68138499 atggcatcgctggcatcgctggcttcactgtatgattgatgatcctccaacaaccagacc 68138558
Query: 395 acctactgctcgtaaatacatttggacaaaccataaattcaacgtgagtggcactccaca 454
||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 68138559 acctactgctcataaatttatttggacaaaccataaattcagtgtgagtggcactccaca 68138618
Query: 455 gcagtacgtaccctattccaccactagaaagaagattcaggagtgggtcccaccttcaac 514
||| || ||| | |||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct: 68138619 gcaatatgtatcttattccaccattgcaaagaagattcaggagtgggacccaccttcaac 68138678
Query: 515 accttacaagtaaagagaacgaaaaacaatttaaagatgtaaaataagaggcttttccta 574
|||||||| |||||||||| |||||| || ||||| |||||||||||||||||||| ||
Sbjct: 68138679 accttacaggtaaagagaatgaaaaataacttaaacatgtaaaataagaggctttttctg 68138738
Query: 575 taattgcgccttcattacttactgttaccttgattaaaattatttgatt 623
||||||| | |||| | ||||||||| |||||||||||||||||||||
Sbjct: 68138739 taattgcactttcactgtttactgttaacttgattaaaattatttgatt 68138787
Score = 315 bits (159), Expect = 2e-83
Identities = 162/163 (99%)
Strand = Plus / Plus
Query: 14 tccctgccgctgagtggccgcttccctccggtgggttttccgcggggcgccggggaggct 73
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92639687 tccctgccgctgagtggccgcttccctccggtgggttttccgcggggcgccggggaggcg 92639746
Query: 74 gggcccgggggccaagatggagttggtgcaggtcctgaggcgcgggctgcagcaggtcag 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92639747 gggcccgggggccaagatggagttggtgcaggtcctgaggcgcgggctgcagcaggtcag 92639806
Query: 134 cggccacggcggcctccgcggctacctacgggttctcttcagg 176
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92639807 cggccacggcggcctccgcggctacctacgggttctcttcagg 92639849
Score = 178 bits (90), Expect = 3e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 258 ggccgtcaccggtgggttatatatactactgagatgaatggcagagacaccttctgggat 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92644337 ggccgtcaccggtgggttatatatactactgagatgaatggcagagacaccttctgggat 92644396
Query: 318 gtagatggaagcatggtgcccccggaatgg 347
||||||||||||||||||||||||||||||
Sbjct: 92644397 gtagatggaagcatggtgcccccggaatgg 92644426
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 173 cagggcaaacgatgtgagagttggaaccttagtaggggaggacaaatacggaaacaaata 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92640734 cagggcaaacgatgtgagagttggaaccttagtaggggaggacaaatacggaaacaaata 92640793
Query: 233 ctatgaagacaacaagcagttttttgg 259
|||||||||||||||||||||||||||
Sbjct: 92640794 ctatgaagacaacaagcagttttttgg 92640820
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,467,541
Number of extensions: 395
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 6
Length of query: 668
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 647
Effective length of database: 2,808,413,156
Effective search space: 1817043311932
Effective search space used: 1817043311932
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)