Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004285
(952 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070443.1| interleukin-10 receptor subunit beta [Bos ta... 431 e-121
Alignment gi|NP_001193271.1| interleukin-20 receptor subunit alpha [Bos t... 89 6e-18
Alignment gi|NP_776977.1| interferon alpha/beta receptor 1 precursor [Bos... 83 4e-16
Alignment gi|NP_001095645.1| interleukin-20 receptor subunit beta [Bos ta... 55 9e-08
Alignment gi|XP_002684633.1| PREDICTED: interferon gamma receptor 2 (inte... 52 8e-07
Alignment gi|XP_592804.3| PREDICTED: interferon gamma receptor 2 (interfe... 52 8e-07
Alignment gi|XP_002690307.1| PREDICTED: interleukin 22-binding protein-li... 49 6e-06
Alignment gi|XP_612334.4| PREDICTED: interleukin 22-binding protein [Bos ... 49 6e-06
>ref|NP_001070443.1| interleukin-10 receptor subunit beta [Bos taurus].
Length = 317
Score = 431 bits (1109), Expect = e-121
Identities = 202/274 (73%), Positives = 227/274 (82%)
Frame = +1
Query: 118 MARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY 297
MARSL +WLGGCLL+SALGMV PPPENVRMNSVNFKNIL+W+SPAFP+G+LTFTAQY SY
Sbjct: 1 MARSLLSWLGGCLLMSALGMV-PPPENVRMNSVNFKNILRWESPAFPKGNLTFTAQYQSY 59
Query: 298 RQFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQ 477
R+FQD C SI+LTECDFSSLSKYGDH LRVRAEFADE S+WINITFCPVDDT IGPP MQ
Sbjct: 60 RKFQDTCTSILLTECDFSSLSKYGDHTLRVRAEFADESSEWINITFCPVDDTTIGPPRMQ 119
Query: 478 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 657
VEALANSLH+RF AP+IENEPE WT+RNIYNSW YHV+YWKNGSDEKF+++ QYDFE LR
Sbjct: 120 VEALANSLHVRFFAPRIENEPEPWTMRNIYNSWTYHVRYWKNGSDEKFSISGQYDFEFLR 179
Query: 658 NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWIXXXXXXXXXXXXXXXXX 837
NLES TTYCVQVR FL DRNK GEWS+PVC QTT DETTP+W+
Sbjct: 180 NLESQTTYCVQVRGFLSDRNKAGEWSEPVCEQTTIDETTPSWMVASVLAASVCAALLLLL 239
Query: 838 XXXXXXXXXYKKTKNAFPPRNSLPQHLKEFLTNP 939
Y+K ++AFPPRNSLPQHLKEF+++P
Sbjct: 240 GCFFLLRCVYRKARHAFPPRNSLPQHLKEFMSHP 273
>ref|NP_001193271.1| interleukin-20 receptor subunit alpha [Bos taurus].
Length = 558
Score = 89.0 bits (219), Expect = 6e-18
Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 11/209 (5%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWDSPAFPQG-DLTFTAQYHSYRQFQ----DQCVSIILTECD 345
+P P NV S+N KNILQW+ P QG ++++T QY Y Q + +C +I T CD
Sbjct: 44 LPKPTNVAFISINMKNILQWNPPEGLQGMEVSYTVQYFIYGQKKWLNKSECRNISRTYCD 103
Query: 346 FSSLSKYGDH--ILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALANSLHMRFL 516
S+ + +H +V+A + S W F P +T IGPP + + S+ +
Sbjct: 104 LSAETSDYEHQYYAKVKAMWGTNCSKWAETGRFYPFLETQIGPPEVALTTDEKSISIVLT 163
Query: 517 APKI---ENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTTYCV 687
APK E + +++ IY++ Y+V + S+ ++ V LE T YCV
Sbjct: 164 APKKWKKNPEESSISMQQIYSNLKYNVSIYNTKSNRTWSQCVTNHTLVFSWLEPGTLYCV 223
Query: 688 QVRAFLPDRNKTGEWSDPVCGQTTNDETT 774
V +F+P + S+ C T D+TT
Sbjct: 224 LVESFVPGPPRLTHPSERQCVSTLEDQTT 252
>ref|NP_776977.1| interferon alpha/beta receptor 1 precursor [Bos taurus].
Length = 560
Score = 82.8 bits (203), Expect = 4e-16
Identities = 69/219 (31%), Positives = 107/219 (48%), Gaps = 17/219 (7%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQY-----------HSYRQFQ-DQCVS 324
VP PEN+++N+ N +L+WD +P + TF AQ+ HS + Q C +
Sbjct: 229 VPSPENIQINADNQIYVLKWD---YPYENATFQAQWLRAFFKKIPGNHSDKWKQIPNCEN 285
Query: 325 IILTECDF-SSLSKYGDHILRVRAEFADEHSDWI-NITFCPVDDTIIGPPGMQVEALA-N 495
+ T C F +S G + +RVRA + S W F TII PP + V+++ +
Sbjct: 286 VTSTHCVFPREVSSRGIYYVRVRASNGNGTSFWSEEKEFNTEMKTIIFPPVISVKSVTDD 345
Query: 496 SLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESST 675
SLH+ A E E +V +Y Y V +W+N S+ + V + + +L+ T
Sbjct: 346 SLHVSVGA---SEESENMSVNQLY-PLIYEVIFWENTSNAERKVLEKRTNFIFPDLKPLT 401
Query: 676 TYCVQVRAFLPD--RNKTGEWSDPVCGQTTNDETTPTWI 786
YCV+ RA + + RNK SD VC +T T+ TW+
Sbjct: 402 VYCVKARALIENDRRNKGSSVSDTVCEKTKPGNTSKTWL 440
Score = 79.3 bits (194), Expect = 4e-15
Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 9/221 (4%)
Frame = +1
Query: 145 GGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYH-----SYRQFQ 309
G +L +A G PENV ++ ++ L+W+S + ++TF+A Y ++++
Sbjct: 15 GRWVLPAASGEANLKPENVEIHIIDDNFFLKWNSSSESVKNVTFSADYQILGTDNWKKLS 74
Query: 310 DQCVSIILTECDFSSL---SKYGDHILRVRAEFADEHSDWINIT-FCPVDDTIIGPPGMQ 477
C I T+C+FSS+ + + LR+RAE + S W + F P + IGPP +
Sbjct: 75 G-CQHITSTKCNFSSVELENVFEKIELRIRAEEGNNTSTWYEVEPFVPFLEAQIGPPDVH 133
Query: 478 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 657
+EA ++ + ++P + W + +S+ Y V WKN S + Y + +
Sbjct: 134 LEAEDKAIILS-ISPPGTKDSIMWAMDR--SSFRYSVVIWKNSSSLEERTETVYPEDKIY 190
Query: 658 NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPT 780
L TYC++V+A L +++ G +S C TT P+
Sbjct: 191 KLSPEITYCLKVKAELRLQSRVGCYSPVYCINTTERHKVPS 231
>ref|NP_001095645.1| interleukin-20 receptor subunit beta [Bos taurus].
Length = 305
Score = 55.1 bits (131), Expect = 9e-08
Identities = 51/215 (23%), Positives = 83/215 (38%), Gaps = 16/215 (7%)
Frame = +1
Query: 151 CLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYH-SYRQFQDQ---- 315
CL V + V+P P+N+ + S N K++L W P+ + ++ +Y Y
Sbjct: 21 CLFVDGVA-VLPAPQNLSVQSTNMKHVLTWSPVTVPEEIVHYSVEYQGEYESLYTSHIWI 79
Query: 316 ----CVSIILTECDFS-SLSKYGDHILRVRAEFADEHSDWINITF-CPVDDTIIGPPGMQ 477
C ECD + ++ + LRVRA S W + + TI+ PPGM+
Sbjct: 80 PSIWCSPTQRPECDITEDITATVSYSLRVRATLGSLTSTWSTLKHRFNQNSTILTPPGME 139
Query: 478 V--EALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKN--GSDEKFAVTAQYDF 645
+ + + + L P E + V YW+ G+ E V
Sbjct: 140 ITMDGFHLLIKLEDLGPHFE----------------FFVSYWRREPGAKEHIKVVRPGVL 183
Query: 646 EV-LRNLESSTTYCVQVRAFLPDRNKTGEWSDPVC 747
V L +E YCV+ R F+ + +S C
Sbjct: 184 PVYLETVEPGAAYCVKARTFVKAIGRHSAFSPTEC 218
>ref|XP_002684633.1| PREDICTED: interferon gamma receptor 2 (interferon gamma transducer
1) [Bos taurus].
Length = 608
Score = 52.0 bits (123), Expect = 8e-07
Identities = 60/237 (25%), Positives = 96/237 (40%), Gaps = 33/237 (13%)
Frame = +1
Query: 154 LLVSALGMVVPP---------PENVRMNSVNFKNILQWDS--------PAFPQGDLTFTA 282
L++S G PP P N++++ N + L W+ P Q ++
Sbjct: 251 LMLSGFGAAAPPADSLAQLPAPGNLKVHLYNAQQALSWEPVSLDSDPRPVVYQVQYKYST 310
Query: 283 QYHSYRQFQDQ----CVSIILTECDFSSLS------KYGDHILRVRAEFADEHSDWINIT 432
+ Y ++ C ++ TECDF++ S + + LRVRA+ S W
Sbjct: 311 SSNWYDVNKEDSKVDCTNLTRTECDFTANSLSEGFPRRFNISLRVRAKLGGLVSAWATAP 370
Query: 433 -FCPVDDTIIGPP-GMQVEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNG 606
F + IGPP ++V SL +R AP E + V Y V YW+
Sbjct: 371 WFEHYRNATIGPPENIRVTPEEGSLIIRLSAPFDVPATEAYFV--------YCVYYWEKA 422
Query: 607 SDEKFAVTAQYDFEVLRNLESSTTYCVQVRA--FLPDRN--KTGEWSDPVCGQTTND 765
++ + +F L +L+ YC QV+A FL N + G S+ C +T D
Sbjct: 423 GAKQVTRPFRSNFITLNDLKPLRVYCFQVKAELFLTKENISRPGHLSNISCCETAAD 479
>ref|XP_592804.3| PREDICTED: interferon gamma receptor 2 (interferon gamma transducer
1) [Bos taurus].
Length = 608
Score = 52.0 bits (123), Expect = 8e-07
Identities = 60/237 (25%), Positives = 96/237 (40%), Gaps = 33/237 (13%)
Frame = +1
Query: 154 LLVSALGMVVPP---------PENVRMNSVNFKNILQWDS--------PAFPQGDLTFTA 282
L++S G PP P N++++ N + L W+ P Q ++
Sbjct: 251 LMLSGFGAAAPPADSLAQLPAPGNLKVHLYNAQQALSWEPVSLDSDPRPVVYQVQYKYST 310
Query: 283 QYHSYRQFQDQ----CVSIILTECDFSSLS------KYGDHILRVRAEFADEHSDWINIT 432
+ Y ++ C ++ TECDF++ S + + LRVRA+ S W
Sbjct: 311 SSNWYDVNKEDSKVDCTNLTRTECDFTANSLSEGFPRRFNISLRVRAKLGGLVSAWATAP 370
Query: 433 -FCPVDDTIIGPP-GMQVEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNG 606
F + IGPP ++V SL +R AP E + V Y V YW+
Sbjct: 371 WFEHYRNATIGPPENIRVTPEEGSLIIRLSAPFDVPATEAYFV--------YCVYYWEKA 422
Query: 607 SDEKFAVTAQYDFEVLRNLESSTTYCVQVRA--FLPDRN--KTGEWSDPVCGQTTND 765
++ + +F L +L+ YC QV+A FL N + G S+ C +T D
Sbjct: 423 GAKQVTRPFRSNFITLNDLKPLRVYCFQVKAELFLTKENISRPGHLSNISCCETAAD 479
>ref|XP_002690307.1| PREDICTED: interleukin 22-binding protein-like [Bos taurus].
Length = 230
Score = 48.9 bits (115), Expect = 6e-06
Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 10/199 (5%)
Frame = +1
Query: 190 PENVRMNSVNFKNILQWD-SPAFPQGDLTFTAQYHSYRQFQ----DQCVSIILTECDFSS 354
P+ V S NF NIL+W A + + QY Y + Q + C I CD ++
Sbjct: 31 PQRVHFQSRNFHNILRWQPGQACLGNNSIYFVQYKMYGERQWKNKETCWGIREFFCDLTN 90
Query: 355 LSK--YGDHILRVRAEFADEHSDW-INITFCPVDDTIIGPPGMQVEALANSLHMRFLAPK 525
+ + + RV+ A HS W + F P +T I PP M + + SL + AP
Sbjct: 91 ETSDIWEPYYGRVKTALAGIHSGWTMTQRFIPWWETKIDPPVMNITHVNGSLLVNLHAPN 150
Query: 526 IE-NEPETWTVRNIYNSWAYHVQYWKNGSD-EKFAVTAQYDFEVLRNLESSTTYCVQVRA 699
+ + E V Y Y V + N + E+ + ++ T YCV
Sbjct: 151 LPYRDQEGENVSMEYYELVYRVFIFNNSLEKEQKVYEGAHRVVEIKVTSPHTGYCVVAEL 210
Query: 700 FLPDRNKTGEWSDPVCGQT 756
+ P ++ + S C +T
Sbjct: 211 YQPMLDRKSQRSRERCMET 229
>ref|XP_612334.4| PREDICTED: interleukin 22-binding protein [Bos taurus].
Length = 230
Score = 48.9 bits (115), Expect = 6e-06
Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 10/199 (5%)
Frame = +1
Query: 190 PENVRMNSVNFKNILQWD-SPAFPQGDLTFTAQYHSYRQFQ----DQCVSIILTECDFSS 354
P+ V S NF NIL+W A + + QY Y + Q + C I CD ++
Sbjct: 31 PQRVHFQSRNFHNILRWQPGQACLGNNSIYFVQYKMYGERQWKNKETCWGIREFFCDLTN 90
Query: 355 LSK--YGDHILRVRAEFADEHSDW-INITFCPVDDTIIGPPGMQVEALANSLHMRFLAPK 525
+ + + RV+ A HS W + F P +T I PP M + + SL + AP
Sbjct: 91 ETSDIWEPYYGRVKTALAGIHSGWTMTQRFIPWWETKIDPPVMNITHVNGSLLVNLHAPN 150
Query: 526 IE-NEPETWTVRNIYNSWAYHVQYWKNGSD-EKFAVTAQYDFEVLRNLESSTTYCVQVRA 699
+ + E V Y Y V + N + E+ + ++ T YCV
Sbjct: 151 LPYRDQEGENVSMEYYELVYRVFIFNNSLEKEQKVYEGAHRVVEIKVTSPHTGYCVVAEL 210
Query: 700 FLPDRNKTGEWSDPVCGQT 756
+ P ++ + S C +T
Sbjct: 211 YQPMLDRKSQRSRERCMET 229
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,646,433
Number of extensions: 955730
Number of successful extensions: 2550
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2535
Number of HSP's successfully gapped: 9
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004285
(952 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535581.2| PREDICTED: similar to interleukin 10 receptor, ... 414 e-116
Alignment gi|XP_541119.2| PREDICTED: similar to interleukin 20 receptor, ... 90 4e-18
Alignment gi|XP_852266.1| PREDICTED: similar to interferon-alpha receptor... 80 3e-15
Alignment gi|XP_544863.2| PREDICTED: similar to interferon-gamma receptor... 68 1e-11
>ref|XP_535581.2| PREDICTED: similar to interleukin 10 receptor, beta precursor
[Canis familiaris].
Length = 374
Score = 414 bits (1065), Expect = e-116
Identities = 198/274 (72%), Positives = 221/274 (80%)
Frame = +1
Query: 118 MARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY 297
M RSLR+ LGGCLL+SALG+V PPP+NVRM SVNFKNILQW+ PAFP+G LTFTAQY SY
Sbjct: 1 MRRSLRSLLGGCLLMSALGLV-PPPKNVRMKSVNFKNILQWELPAFPKGTLTFTAQYQSY 59
Query: 298 RQFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQ 477
R+FQD C S TECDFSSLSKYGDH LRVRAEFADEHSDW+NITFCPVDDT+IGPPGMQ
Sbjct: 60 RKFQDLCTSTAFTECDFSSLSKYGDHTLRVRAEFADEHSDWVNITFCPVDDTMIGPPGMQ 119
Query: 478 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 657
VEALANSLH+RFLAPKIENEPETWT+RNIYNSWAY+VQYWKNGSDEK+ +T QYDFEVLR
Sbjct: 120 VEALANSLHLRFLAPKIENEPETWTMRNIYNSWAYNVQYWKNGSDEKWPITCQYDFEVLR 179
Query: 658 NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWIXXXXXXXXXXXXXXXXX 837
+LE TTYCV+V+ FLP+RNKTGEWS PVC QT ND+T P+W
Sbjct: 180 DLEPWTTYCVRVQGFLPERNKTGEWSKPVCEQTANDDTAPSW-TVAIVLAASVCVALLLL 238
Query: 838 XXXXXXXXXYKKTKNAFPPRNSLPQHLKEFLTNP 939
YK+TK+ F PRN LPQHLKEFL +P
Sbjct: 239 GCSALLWCLYKRTKHVFSPRNCLPQHLKEFLGHP 272
>ref|XP_541119.2| PREDICTED: similar to interleukin 20 receptor, alpha [Canis
familiaris].
Length = 558
Score = 89.7 bits (221), Expect = 4e-18
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWDSPAFPQG-DLTFTAQYHSYRQ----FQDQCVSIILTECD 345
+P P N+ S+N KNILQW P QG ++T+T QY Y Q + +C +I T CD
Sbjct: 48 LPKPTNITFLSINMKNILQWSPPEGLQGAEVTYTVQYFIYGQKKWLSKSECRNINRTCCD 107
Query: 346 FSSLSKYGDH--ILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALANSLHMRFL 516
S + +H +V+A + S W F P +T IGPP + + S+ +
Sbjct: 108 LSVETSDYEHQYYAKVKAIWETNCSKWAETGRFYPFLETQIGPPRVALTTDEKSISIVLT 167
Query: 517 AP---KIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTTYCV 687
AP K E + ++R IY++ Y+V + S+ ++ VL LE T YC+
Sbjct: 168 APEKWKRSPEESSISMRQIYSNLKYNVSIYNTKSNRMWSQCVTNHTLVLVWLEPDTLYCI 227
Query: 688 QVRAFLPDRNKTGEWSDPVCGQTTNDETT 774
V +F+P + + S+ C +T D+T+
Sbjct: 228 LVESFVPGPPRLAQPSEKQCVRTLKDQTS 256
>ref|XP_852266.1| PREDICTED: similar to interferon-alpha receptor 1 precursor [Canis
familiaris].
Length = 569
Score = 80.1 bits (196), Expect = 3e-15
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 7/208 (3%)
Frame = +1
Query: 154 LLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQFQ----DQCV 321
L +A G + P+NV + V+ IL+W+ ++TF+A Y + C
Sbjct: 20 LPAAAGGTTLKSPQNVEVYIVDDTFILRWNRSNPSIRNVTFSAYYQTLGNDTWLKLPGCQ 79
Query: 322 SIILTECDFSSL--SKYGDHILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALA 492
S+ T CDFSSL + Y LR+RAE + S W NI +F + IGPP + +EA
Sbjct: 80 SVANTTCDFSSLKLNVYDKVKLRIRAEEGNNTSPWHNIDSFTLFEKAQIGPPKVHLEAED 139
Query: 493 NSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESS 672
++ + P + W + + +S+ Y + WKN S + Y + + NL
Sbjct: 140 KTIIINISLPGARDSV-MWALDS--SSFTYSLDIWKNSSSGERRTETVYSRDKIYNLSPE 196
Query: 673 TTYCVQVRAFLPDRNKTGEWSDPVCGQT 756
TTYC++V+A L R K G +S C +T
Sbjct: 197 TTYCLKVKARLLPR-KNGIYSPVYCIKT 223
Score = 67.8 bits (164), Expect = 1e-11
Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 25/227 (11%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWDSP------AFPQGDLTFTAQY-------------HSYRQ 303
+PPPEN+R++S N +L+WD P + ++TF AQ+ ++Q
Sbjct: 229 LPPPENIRLDSKNNIFVLRWDYPYGSVKWGHARPNVTFQAQWLYAYLKKIPGDSSGKWKQ 288
Query: 304 FQDQCVSIILTECDF-SSLSKYGDHILRVRAEFADEHSDWI-NITFCPVDDTIIGPPGMQ 477
C ++ T+C F + + G +++RV+A + S W F + PP +
Sbjct: 289 IPG-CKNVHTTQCVFLQNTFRKGIYLIRVQASDGNTTSVWSKEEKFDAQLQITLLPPVIT 347
Query: 478 VEALAN-SLHMRFLAP-KIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEV 651
+++ + SL + AP + EN+P I Y + +W+N S+ + + +
Sbjct: 348 MKSTNDVSLRVYISAPEESENKPVNQNFPLI-----YEIVFWENTSNAERKIREKKTDFT 402
Query: 652 LRNLESSTTYCVQVRAFLPDR--NKTGEWSDPVCGQTTNDETTPTWI 786
L+ T YCV+ RA + D NK+ +SD VC +T T+ TW+
Sbjct: 403 FSKLKPLTEYCVKARALIEDDKWNKSSGFSDTVCEKTKPGNTSRTWL 449
>ref|XP_544863.2| PREDICTED: similar to interferon-gamma receptor beta chain
precursor [Canis familiaris].
Length = 363
Score = 68.2 bits (165), Expect = 1e-11
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 24/222 (10%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQ----YHSYRQFQD--------QCVS 324
+P P N +++ N + +L W+ + Q Y S Q+ D C++
Sbjct: 54 LPAPRNPKVHLYNAERVLSWEPVSLSNDSRPVVYQVQYKYASGSQWYDFSVDSIGVNCMN 113
Query: 325 IILTECDFSSLSKYGDHI------LRVRAEFADEHSDWINIT-FCPVDDTIIGPP-GMQV 480
I ECDF+ S + + LRVRA+ D S W+ + F + + +GPP + V
Sbjct: 114 ITTMECDFTPTSPSQEFLPHLNVSLRVRAKVGDLVSTWVRVPWFQYLRNVTVGPPENVWV 173
Query: 481 EALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRN 660
SL +RF +P + P + T + Y+V YW+ G +K + + VL +
Sbjct: 174 TPGEGSLVIRFSSP-FDISPSSAT-------FLYYVHYWEKGGIQKVKGPFRSNSIVLND 225
Query: 661 LESSTTYCVQVRAFL----PDRNKTGEWSDPVCGQTTNDETT 774
L+ YC+QV+A L ++ G S+ C +T D TT
Sbjct: 226 LKPLREYCLQVKAQLVWTVSKLSRLGHLSNVSCYETAADATT 267
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,207,452
Number of extensions: 958473
Number of successful extensions: 2535
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2521
Number of HSP's successfully gapped: 5
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004285
(952 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000619.3| interleukin-10 receptor subunit beta precursor ... 429 e-120
Alignment gi|NP_055247.2| interleukin-20 receptor subunit alpha precursor... 89 8e-18
Alignment gi|NP_000620.2| interferon alpha/beta receptor 1 precursor [Hom... 80 3e-15
Alignment gi|NP_005525.2| interferon gamma receptor 2 precursor [Homo sap... 62 8e-10
Alignment gi|NP_851826.1| interleukin-22 receptor subunit alpha-2 isoform... 50 4e-06
>ref|NP_000619.3| interleukin-10 receptor subunit beta precursor [Homo sapiens].
Length = 325
Score = 429 bits (1102), Expect = e-120
Identities = 205/274 (74%), Positives = 225/274 (82%)
Frame = +1
Query: 118 MARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY 297
MA SL +WLGGCLLVSALGMV PPPENVRMNSVNFKNILQW+SPAF +G+LTFTAQY SY
Sbjct: 1 MAWSLGSWLGGCLLVSALGMV-PPPENVRMNSVNFKNILQWESPAFAKGNLTFTAQYLSY 59
Query: 298 RQFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQ 477
R FQD+C++ LTECDFSSLSKYGDH LRVRAEFADEHSDW+NITFCPVDDTIIGPPGMQ
Sbjct: 60 RIFQDKCMNTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVNITFCPVDDTIIGPPGMQ 119
Query: 478 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 657
VE LA+SLHMRFLAPKIENE ETWT++N+YNSW Y+VQYWKNG+DEKF +T QYDFEVLR
Sbjct: 120 VEVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLR 179
Query: 658 NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWIXXXXXXXXXXXXXXXXX 837
NLE TTYCVQVR FLPDRNK GEWS+PVC QTT+DET P+W+
Sbjct: 180 NLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPSWMVAVILMASVFMVCLALL 239
Query: 838 XXXXXXXXXYKKTKNAFPPRNSLPQHLKEFLTNP 939
YKKTK AF PRNSLPQHLKEFL +P
Sbjct: 240 GCFALLWCVYKKTKYAFSPRNSLPQHLKEFLGHP 273
>ref|NP_055247.2| interleukin-20 receptor subunit alpha precursor [Homo sapiens].
Length = 553
Score = 88.6 bits (218), Expect = 8e-18
Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 11/209 (5%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWDSPAFPQG-DLTFTAQYHSYRQFQ----DQCVSIILTECD 345
+P P N+ S+N KN+LQW P QG +T+T QY Y Q + +C +I T CD
Sbjct: 37 LPKPANITFLSINMKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCD 96
Query: 346 FSSLSKYGDH--ILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALANSLHMRFL 516
S+ + +H +V+A + + S W F P +T IGPP + + S+ +
Sbjct: 97 LSAETSDYEHQYYAKVKAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLT 156
Query: 517 AP-KIENEPETWTV--RNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTTYCV 687
AP K + PE V + IY++ Y+V S+ ++ VL LE +T YCV
Sbjct: 157 APEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCV 216
Query: 688 QVRAFLPDRNKTGEWSDPVCGQTTNDETT 774
V +F+P + + S+ C +T D+++
Sbjct: 217 HVESFVPGPPRRAQPSEKQCARTLKDQSS 245
>ref|NP_000620.2| interferon alpha/beta receptor 1 precursor [Homo sapiens].
Length = 557
Score = 80.1 bits (196), Expect = 3e-15
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQY-------------HSYRQFQDQCV 321
+PPPEN+ ++ N +L+WD + ++TF Q+ + ++Q D C
Sbjct: 229 LPPPENIEVSVQNQNYVLKWD---YTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPD-CE 284
Query: 322 SIILTECDF-SSLSKYGDHILRVRAEFADEHSDWIN-ITFCPVDDTIIGPPGMQVEALAN 495
++ T+C F ++ + G ++LRV+A + S W I F + PP + +L++
Sbjct: 285 NVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSD 344
Query: 496 SLHMRFLAPKIE-NEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESS 672
S H+ APK N P IY + +W+N S+ + + + + NL+
Sbjct: 345 SFHIYIGAPKQSGNTPVIQDYPLIYE-----IIFWENTSNAERKIIEKKTDVTVPNLKPL 399
Query: 673 TTYCVQVRAFLPDR--NKTGEWSDPVCGQTTNDETTPTWI 786
T YCV+ RA D NK+ +SD VC +T T+ W+
Sbjct: 400 TVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTSKIWL 439
Score = 74.3 bits (181), Expect = 2e-13
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 7/215 (3%)
Frame = +1
Query: 154 LLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQFQ----DQCV 321
L +A G + P+ V ++ ++ IL+W+ G++TF+ Y C
Sbjct: 21 LSAAAGGKNLKSPQKVEVDIIDDNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQ 80
Query: 322 SIILTECDFSSL--SKYGDHILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALA 492
+I T+C+FSSL + Y + LR+RAE + S W + +F P IGPP + +EA
Sbjct: 81 NITSTKCNFSSLKLNVYEEIKLRIRAE-KENTSSWYEVDSFTPFRKAQIGPPEVHLEAED 139
Query: 493 NSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESS 672
++ + ++P ++ W + + S+ Y + WKN S + + Y + L
Sbjct: 140 KAIVIH-ISPGTKDSV-MWALDGL--SFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPE 195
Query: 673 TTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTP 777
TTYC++V+A L K G +S C +TT + P
Sbjct: 196 TTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELP 230
>ref|NP_005525.2| interferon gamma receptor 2 precursor [Homo sapiens].
Length = 337
Score = 62.0 bits (149), Expect = 8e-10
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 25/223 (11%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQFQDQ-------------CV 321
+P P++ ++ N + +L W+ A T Y ++ D C
Sbjct: 30 LPAPQHPKIRLYNAEQVLSWEPVALSNS--TRPVVYQVQFKYTDSKWFTADIMSIGVNCT 87
Query: 322 SIILTECDFSSLSKYGDH------ILRVRAEFADEHSDWINIT-FCPVDDTIIGPP-GMQ 477
I TECDF++ S LR+RAE HS W+ + F + +GPP ++
Sbjct: 88 QITATECDFTAASPSAGFPMDFNVTLRLRAELGALHSAWVTMPWFQHYRNVTVGPPENIE 147
Query: 478 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 657
V SL +RF +P + T + Y+V YW+ G ++ + + L
Sbjct: 148 VTPGEGSLIIRFSSPFDIADTST-------AFFCYYVHYWEKGGIQQVKGPFRSNSISLD 200
Query: 658 NLESSTTYCVQVRAFL----PDRNKTGEWSDPVCGQTTNDETT 774
NL+ S YC+QV+A L + + G S+ C +T D +T
Sbjct: 201 NLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMADAST 243
>ref|NP_851826.1| interleukin-22 receptor subunit alpha-2 isoform 2 [Homo sapiens].
Length = 231
Score = 49.7 bits (117), Expect = 4e-06
Identities = 53/201 (26%), Positives = 79/201 (39%), Gaps = 15/201 (7%)
Frame = +1
Query: 190 PENVRMNSVNFKNILQWD-SPAFPQGDLTFTAQYHSYRQFQ----DQCVSIILTECDFSS 354
P+ V+ S NF NILQW A + QY Y Q Q + C CD +S
Sbjct: 31 PQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTS 90
Query: 355 LSK------YGDHILRVRAEFADEHSDW-INITFCPVDDTIIGPPGMQVEALANSLHMRF 513
+ YG RVRA A +S+W + F P +T I PP M + + SL +
Sbjct: 91 ETSDIQEPYYG----RVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVIL 146
Query: 514 LAPKI--ENEPETWTVRNIYNSWAYHVQYWKNGSD-EKFAVTAQYDFEVLRNLESSTTYC 684
AP + + E Y Y V N + E+ + + L ++YC
Sbjct: 147 HAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYC 206
Query: 685 VQVRAFLPDRNKTGEWSDPVC 747
V + P ++ + S+ C
Sbjct: 207 VVAEIYQPMLDRRSQRSEERC 227
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,455,327
Number of extensions: 942838
Number of successful extensions: 2613
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2599
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004285
(952 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032375.2| interleukin-10 receptor subunit beta [Mus muscu... 370 e-102
Alignment gi|NP_034638.2| interferon alpha/beta receptor 1 precursor [Mus... 82 5e-16
Alignment gi|NP_766374.1| interleukin-20 receptor subunit alpha precursor... 77 2e-14
Alignment gi|NP_001028715.2| interleukin 20 receptor beta precursor [Mus ... 54 2e-07
Alignment gi|NP_839989.2| interleukin-22 receptor subunit alpha-2 precurs... 50 3e-06
Alignment gi|NP_032364.1| interferon gamma receptor 2 [Mus musculus]. 49 6e-06
>ref|NP_032375.2| interleukin-10 receptor subunit beta [Mus musculus].
Length = 351
Score = 370 bits (949), Expect = e-102
Identities = 174/273 (63%), Positives = 206/273 (75%)
Frame = +1
Query: 121 ARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYR 300
A S+ WLGG LLV ALGM+ PPPE VRMNSVNFKNILQW+ PAFP+ +LTFTAQY SYR
Sbjct: 4 APSVAGWLGGFLLVPALGMI-PPPEKVRMNSVNFKNILQWEVPAFPKTNLTFTAQYESYR 62
Query: 301 QFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQV 480
FQD C T+CDFS LSKYGD+ +RVRAE ADEHS+W+N+TFCPV+DTIIGPP MQ+
Sbjct: 63 SFQDHCKRTASTQCDFSHLSKYGDYTVRVRAELADEHSEWVNVTFCPVEDTIIGPPEMQI 122
Query: 481 EALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRN 660
E+LA SLH+RF AP+IENEPETWT++NIY+SWAY VQYWKNG++EKF V + YD EVLRN
Sbjct: 123 ESLAESLHLRFSAPQIENEPETWTLKNIYDSWAYRVQYWKNGTNEKFQVVSPYDSEVLRN 182
Query: 661 LESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWIXXXXXXXXXXXXXXXXXX 840
LE TTYC+QV+ FL D+N+TGEWS+P+C +T NDE TP+WI
Sbjct: 183 LEPWTTYCIQVQGFLLDQNRTGEWSEPICERTGNDEITPSWIVAIILIVSVLVVFLFLLG 242
Query: 841 XXXXXXXXYKKTKNAFPPRNSLPQHLKEFLTNP 939
YKKTK+ F SLPQHLKEFL +P
Sbjct: 243 CFVVLWLIYKKTKHTFRSGTSLPQHLKEFLGHP 275
>ref|NP_034638.2| interferon alpha/beta receptor 1 precursor [Mus musculus].
Length = 590
Score = 82.4 bits (202), Expect = 5e-16
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 7/206 (3%)
Frame = +1
Query: 163 SALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQFQ----DQCVSII 330
+A G + PPEN+ + ++ L+W S G +TF+A+Y + + + +C
Sbjct: 23 AAGGENLKPPENIDVYIIDDNYTLKWSSHGESMGSVTFSAEYRTKDEAKWLKVPECQHTT 82
Query: 331 LTECDFSSLSK--YGDHILRVRAEFADEHSDWINIT-FCPVDDTIIGPPGMQVEALANSL 501
T+C+FS L Y RVRAE + S W + F P + PP +++EA ++
Sbjct: 83 TTKCEFSLLDTNVYIKTQFRVRAEEGNSTSSWNEVDPFIPFYTAHMSPPEVRLEAEDKAI 142
Query: 502 HMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTTY 681
+ P + W + S++Y ++ W+ S +K + + Y E + L TTY
Sbjct: 143 LVHISPPG--QDGNMWALEK--PSFSYTIRIWQKSSSDKKTINSTYYVEKIPELLPETTY 198
Query: 682 CVQVRAFLPDRNKTGEWSDPVCGQTT 759
C++V+A P K +S C TT
Sbjct: 199 CLEVKAIHPSLKKHSNYSTVQCISTT 224
Score = 60.8 bits (146), Expect = 1e-09
Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 15/217 (6%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQY------HSYRQFQDQ------CVS 324
+P P N+++++ +L+WD A D+ F AQ+ S D+ C +
Sbjct: 229 MPVPGNLQVDAQGKSYVLKWDYIA--SADVLFRAQWLPGYSKSSSGSRSDKWKPIPTCAN 286
Query: 325 IILTECDFSSLSKY-GDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGM-QVEALANS 498
+ T C FS + Y G L V+A + S W F I+ PP + V A++++
Sbjct: 287 VQTTHCVFSQDTVYTGTFFLHVQASEGNHTSFWSEEKFIDSQKHILPPPPVITVTAMSDT 346
Query: 499 LHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRNLESSTT 678
L + + + T N Y + +W+N S+ K ++ L+NL+ T
Sbjct: 347 LLVY-----VNCQDSTCDGLN------YEIIFWENTSNTKISMEKDGPEFTLKNLQPLTV 395
Query: 679 YCVQVRA-FLPDRNKTGEWSDPVCGQTTNDETTPTWI 786
YCVQ R F NKT +S+ +C +T + WI
Sbjct: 396 YCVQARVLFRALLNKTSNFSEKLCEKTRPGSFSTIWI 432
>ref|NP_766374.1| interleukin-20 receptor subunit alpha precursor [Mus musculus].
Length = 546
Score = 77.4 bits (189), Expect = 2e-14
Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 18/225 (8%)
Frame = +1
Query: 154 LLVSALGMVVP-------PPENVRMNSVNFKNILQWDSPAFPQG-DLTFTAQYHSYRQFQ 309
LL++A G VP P N+ S+N KN+L W+ P G ++T+T QY Y Q +
Sbjct: 24 LLLAASGRAVPCVFCGLPKPTNITFLSINMKNVLHWNPPESLHGVEVTYTVQYFIYGQKK 83
Query: 310 ----DQCVSIILTECDFSSLSKYGDH--ILRVRAEFADEHSDWINIT-FCPVDDTIIGPP 468
+C SI T CD S + +H +V+A + S+W F P +T + PP
Sbjct: 84 WLNASKCGSINRTYCDLSVETSDYEHQFYAKVKAIWEARCSEWAETERFYPFLETQVSPP 143
Query: 469 GMQVEALANSLHMRFLAP-KIENEPETWTV--RNIYNSWAYHVQYWKNGSDEKFAVTAQY 639
+ + S+ + AP K + P+ TV + IY + Y+V + S ++
Sbjct: 144 EVALTTGEKSISIALTAPEKWKRNPQDHTVSMQQIYPNLKYNVSVYNTKSRRTWSQCVTN 203
Query: 640 DFEVLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETT 774
VL LE +T YCV V + +P + S C T +T+
Sbjct: 204 STLVLSWLEPNTLYCVHVESLVPGPPRLPMPSQKQCISTLEVQTS 248
>ref|NP_001028715.2| interleukin 20 receptor beta precursor [Mus musculus].
Length = 308
Score = 53.5 bits (127), Expect = 2e-07
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 16/206 (7%)
Frame = +1
Query: 178 VVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQF---------QDQCVSII 330
V+P P+N+ + S N K++L W+ P + + +Y + QC
Sbjct: 29 VLPAPQNLSVQSTNMKHLLMWNPVTQPGETVLYCVEYQGEYESLYMSHIWIPSSQCSPTK 88
Query: 331 LTECDFS-SLSKYGDHILRVRAEFADEHSDWINITF-CPVDDTIIGPPGMQV--EALANS 498
ECD + ++ + RV+A + S W N+ + T++ PP M+V L
Sbjct: 89 SLECDVTDDITATVPYNFRVKAMLGSQTSAWSNLEHPFNRNATVLTPPRMEVTEHGLHLV 148
Query: 499 LHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKN--GSDEKFAVTAQYDFEV-LRNLES 669
+ + L P+ E + V YW+ G+ E + D V L +E
Sbjct: 149 IELEDLGPQFE----------------FLVVYWRREPGAAEHVKMVRSGDIPVHLETMEP 192
Query: 670 STTYCVQVRAFLPDRNKTGEWSDPVC 747
YCV+ +A + + +S P C
Sbjct: 193 GAMYCVKAQALVKAIGRHSAFSQPTC 218
>ref|NP_839989.2| interleukin-22 receptor subunit alpha-2 precursor [Mus musculus].
Length = 230
Score = 50.1 bits (118), Expect = 3e-06
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 11/184 (5%)
Frame = +1
Query: 190 PENVRMNSVNFKNILQWDS-PAFPQGDLTFTAQYHSYRQFQDQ----CVSIILTECDFS- 351
P+ VR S NF NIL W + + P + + QY Y Q Q + C CD +
Sbjct: 30 PQKVRFQSRNFHNILHWQAGSSLPSNNSIYFVQYKMYGQSQWEDKVDCWGTTALFCDLTN 89
Query: 352 -SLSKYGDHILRVRAEFADEHSDWINI-TFCPVDDTIIGPPGMQVEALANSLHMRFLAPK 525
+L Y + RV A HS W F P +T + PP + + + SL + P+
Sbjct: 90 ETLDPYELYYGRVMTACAGRHSAWTRTPRFTPWWETKLDPPVVTITRVNASLRVLLRPPE 149
Query: 526 IENEPETWTVRNI--YNSWAYHVQYWKNGSD-EKFAVTAQYDFEVLRNLESSTTYCVQVR 696
+ N ++ ++ Y Y V N + E+ A + L ++YCV
Sbjct: 150 LPNRNQSGKNASMETYYGLVYRVFTINNSLEKEQKAYEGTQRAVEIEGLIPHSSYCVVAE 209
Query: 697 AFLP 708
+ P
Sbjct: 210 MYQP 213
>ref|NP_032364.1| interferon gamma receptor 2 [Mus musculus].
Length = 332
Score = 48.9 bits (115), Expect = 6e-06
Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 31/243 (12%)
Frame = +1
Query: 124 RSLRNWLGGCLLVSALGMVVPPPE---------NVRMNSVNFKNILQWDSPAFPQGD--- 267
R L WL LL+ LG P+ N R++ N + IL W+ P+ D
Sbjct: 2 RPLPLWLPS-LLLCGLGAAASSPDSFSQLAAPLNPRLHLYNDEQILTWE-PSPSSNDPRP 59
Query: 268 LTFTAQYHS-----YRQFQDQCVSIILTECDFSSLS--KYGDH----ILRVRAEFADEHS 414
+ + +Y +R + C I T+CD + K H LRVRA+ + S
Sbjct: 60 VVYQVEYSFIDGSWHRLLEPNCTDITETKCDLTGGGRLKLFPHPFTVFLRVRAKRGNLTS 119
Query: 415 DWINIT-FCPVDDTIIGPP-GMQVEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHV 588
W+ + F ++ +GPP + V SL + F P T+ Y V
Sbjct: 120 KWVGLEPFQHYENVTVGPPKNISVTPGKGSLVIHFSPPFDVFHGATFQ---------YLV 170
Query: 589 QYWKNGSDEKFAVTAQYDFE--VLRNLESSTTYCVQVRAFLPDRNKT----GEWSDPVCG 750
YW+ ++ V + VL NL+ YC+Q A L +NK G S+ C
Sbjct: 171 HYWEKSETQQEQVEGPFKSNSIVLGNLKPYRVYCLQTEAQLILKNKKIRPHGLLSNVSCH 230
Query: 751 QTT 759
+TT
Sbjct: 231 ETT 233
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,792,446
Number of extensions: 788474
Number of successful extensions: 1957
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1949
Number of HSP's successfully gapped: 7
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004285
(952 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998936.1| interleukin-10 receptor subunit beta [Sus scrof... 514 e-146
Alignment gi|NP_998937.1| interferon alpha/beta receptor 1 precursor [Sus... 88 8e-18
Alignment gi|NP_001104728.1| interferon gamma receptor 2 [Sus scrofa]. 67 1e-11
Alignment gi|XP_003358614.1| PREDICTED: interleukin-20 receptor subunit b... 56 3e-08
Alignment gi|XP_003121227.1| PREDICTED: interleukin-22 receptor subunit a... 50 1e-06
>ref|NP_998936.1| interleukin-10 receptor subunit beta [Sus scrofa].
Length = 362
Score = 514 bits (1324), Expect = e-146
Identities = 246/274 (89%), Positives = 248/274 (90%)
Frame = +1
Query: 118 MARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY 297
MARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY
Sbjct: 1 MARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSY 60
Query: 298 RQFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQ 477
RQFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQ
Sbjct: 61 RQFQDQCVSIILTECDFSSLSKYGDHILRVRAEFADEHSDWINITFCPVDDTIIGPPGMQ 120
Query: 478 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 657
VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR
Sbjct: 121 VEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLR 180
Query: 658 NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWIXXXXXXXXXXXXXXXXX 837
NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWI
Sbjct: 181 NLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPTWIVACVLAASVVAAFLLLL 240
Query: 838 XXXXXXXXXYKKTKNAFPPRNSLPQHLKEFLTNP 939
YKKTKNAFPPRNSLPQHLKEFL++P
Sbjct: 241 GCFILLRCIYKKTKNAFPPRNSLPQHLKEFLSHP 274
>ref|NP_998937.1| interferon alpha/beta receptor 1 precursor [Sus scrofa].
Length = 560
Score = 87.8 bits (216), Expect = 8e-18
Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 8/232 (3%)
Frame = +1
Query: 109 GATMARSLRNWLGGCLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQY 288
G A +L G ++ A G + PENV ++ ++ IL+W S + ++TF+A Y
Sbjct: 3 GLLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKSSSESVSNVTFSADY 62
Query: 289 HSYRQFQ----DQCVSIILTECDFSSL---SKYGDHILRVRAEFADEHSDWINIT-FCPV 444
C + TEC+FSS+ S Y LR+RAE + S W + F P
Sbjct: 63 QITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKTKLRIRAETGNSTSPWYEVEPFIPF 122
Query: 445 DDTIIGPPGMQVEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFA 624
+ IGPP + +EA ++ + P +N W + + +S+ Y + WKN S +
Sbjct: 123 QEAQIGPPDVHLEAEDKAIIINLSPPGTKNSV-MWAMDS--SSFVYSLVIWKNSSSLEER 179
Query: 625 VTAQYDFEVLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPT 780
Y + + L TTYC++V+A L K G +S C TT P+
Sbjct: 180 TKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPS 231
Score = 65.1 bits (157), Expect = 5e-11
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 18/220 (8%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQY-----------HSYRQFQ-DQCVS 324
+P PEN+ +N+ N +L+W+ + ++TF AQ+ HS + Q C +
Sbjct: 229 LPSPENLEINAENRVYVLKWN---YTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCEN 285
Query: 325 IILTECDF-SSLSKYGDHILRVRAEFADEHSDWINIT-FCPVDDTIIGPPGMQVEALAN- 495
+ T C F ++ G +RV+A + S W F TI+ PP + ++ + +
Sbjct: 286 VKTTHCVFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPINDA 345
Query: 496 SLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSD-EKFAVTAQYDFEVLRNLESS 672
SL + APK E E +V +Y Y V + +N SD E+ + + DF NL+
Sbjct: 346 SLRVGIGAPK---ESEDKSVNQLY-PLIYEVIFRENTSDTERDVLEKRTDF-TFSNLKPL 400
Query: 673 TTYCVQVRAFLP-DR-NKTGEWSDPVCGQTTNDETTPTWI 786
T YCV+ RA + DR N++ +SD VC +T T+ W+
Sbjct: 401 TVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWL 440
>ref|NP_001104728.1| interferon gamma receptor 2 [Sus scrofa].
Length = 369
Score = 67.4 bits (163), Expect = 1e-11
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 24/222 (10%)
Frame = +1
Query: 181 VPPPENVRMNSVNFKNILQWD--------SPAFPQGDLTFTAQYHSY----RQFQDQCVS 324
+PPP+N+++ N + L WD P Q ++ ++ Y R C +
Sbjct: 34 LPPPQNLKVRLYNAQQALSWDPVTLSNDTRPVVYQVQYRYSTSHNWYDVNKRDISVDCTN 93
Query: 325 IILTECDF--SSLSK----YGDHILRVRAEFADEHSDWINIT-FCPVDDTIIGPP-GMQV 480
+ TECDF +SLSK + LRVRA+ D S W+ F + IGPP + V
Sbjct: 94 LSRTECDFTANSLSKGFPRQFNISLRVRAKVGDRVSPWVTAPWFEHYRNATIGPPENIWV 153
Query: 481 EALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSDEKFAVTAQYDFEVLRN 660
SL +RF +P + V ++Y+V Y + ++ + +F L +
Sbjct: 154 TPEEGSLIIRFSSP--------FDVPASVAFFSYYVYYREMAGIQQVTQPFRNNFITLND 205
Query: 661 LESSTTYCVQVRA--FLPDRN--KTGEWSDPVCGQTTNDETT 774
L+ YC QV+A FL N ++G S+ C +TT D +T
Sbjct: 206 LKPLRVYCFQVKAELFLVKENISRSGHLSNISCSETTADAST 247
>ref|XP_003358614.1| PREDICTED: interleukin-20 receptor subunit beta-like [Sus scrofa].
Length = 304
Score = 56.2 bits (134), Expect = 3e-08
Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 16/215 (7%)
Frame = +1
Query: 151 CLLVSALGMVVPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQYHSYRQF-------- 306
CLL + V+P P+N+ + S N K++L W P+ + ++ +Y +
Sbjct: 20 CLLTDGVA-VLPAPQNISVQSTNMKHVLTWSPVMVPEEIVYYSVEYQGEYESLYMSHIWI 78
Query: 307 -QDQCVSIILTECDFS-SLSKYGDHILRVRAEFADEHSDWINITF-CPVDDTIIGPPGMQ 477
+ C ECD + ++ + LRVRA + S W + + T + PPGM+
Sbjct: 79 PSNWCSPTTGLECDITDDITATVPYNLRVRATLGSQTSAWSTLKHPFNRNSTTLIPPGME 138
Query: 478 V--EALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKN--GSDEKFAVTAQYDF 645
V + + + L P+ E + V YW+ G+ E V
Sbjct: 139 VTKDGFHLVIKLEDLGPQFE----------------FFVAYWRREPGAKEHVKVVRPGGI 182
Query: 646 EV-LRNLESSTTYCVQVRAFLPDRNKTGEWSDPVC 747
+ L +E TYCV+ R F+ + +S C
Sbjct: 183 PMHLETMEPGATYCVKARTFVKAIGRYSAFSQAEC 217
>ref|XP_003121227.1| PREDICTED: interleukin-22 receptor subunit alpha-2-like [Sus
scrofa].
Length = 231
Score = 50.4 bits (119), Expect = 1e-06
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 13/199 (6%)
Frame = +1
Query: 190 PENVRMNSVNFKNILQWD-SPAFPQGDLTFTAQYHSYRQFQ----DQCVSIILTECDFSS 354
P+ V S NF NIL W A + QY Y + Q + C I CD ++
Sbjct: 31 PQRVHFQSRNFHNILHWQPGGACTSNSSIYFVQYKMYGERQWKNKENCWGIQEFFCDLTN 90
Query: 355 LSK--YGDHILRVRAEFADEHSDW-INITFCPVDDTIIGPPGMQVEALANSLHMRFLAPK 525
+ + + RVR A HS W + F P +T I PP M + + SL + APK
Sbjct: 91 ETSDIWEPYYGRVRTSLAGMHSGWTMTRRFTPWWETKIDPPTMNITQVNGSLVVILHAPK 150
Query: 526 I---ENEPETWTVRNIYNSWAYHVQYWKNG--SDEKFAVTAQYDFEVLRNLESSTTYCVQ 690
+ + + +T ++ N Y Y + N ++K A+ E+ L +YCV
Sbjct: 151 LPYRDGKGKTVSMENYY-ELVYRLFIINNSLEKEQKVYEGARRVVEI-EALTPHRSYCVV 208
Query: 691 VRAFLPDRNKTGEWSDPVC 747
+ P ++ + S+ C
Sbjct: 209 AEIYQPMLDRRSQRSEERC 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,280,374
Number of extensions: 663512
Number of successful extensions: 1611
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1596
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004285
(952 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894512.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 331 4e-88
gb|GL893712.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 297 6e-78
gb|GL893534.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 258 5e-66
gb|GL894867.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 228 4e-57
gb|GL895134.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 123 2e-25
>gb|GL894512.1| Sus scrofa unplaced genomic scaffold chrU_scaffold317
Length = 517
Score = 331 bits (167), Expect = 4e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 452 ccattattggacctcctggaatgcaagtagaggcacttgcgaattctttacatatgcgtt 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccattattggacctcctggaatgcaagtagaggcacttgcgaattctttacatatgcgtt 383
Query: 512 tcttagcccccaaaattgagaatgaacctgaaacatggactgtgaggaatatttataact 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttagcccccaaaattgagaatgaacctgaaacatggactgtgaggaatatttataact 443
Query: 572 catgggcttatcatgtgcaatattggaagaatggctccgacgaaaag 618
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgggcttatcatgtgcaatattggaagaatggctccgacgaaaag 490
>gb|GL893712.1| Sus scrofa unplaced genomic scaffold chrU_scaffold245
Length = 315
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 617 agtttgcagttaccgcccagtatgacttcgaggtccttcgaaatctggagtcatccacaa 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 agtttgcagttaccgcccagtatgacttcgaggtccttcgaaatctggagtcatccacaa 106
Query: 677 cttactgtgttcaagtccgagcgtttcttcccgatcggaacaaaaccggggaatggagtg 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cttactgtgttcaagtccgagcgtttcttcccgatcggaacaaaaccggggaatggagtg 46
Query: 737 atcctgtctgtgggcagacgaccaatgacg 766
||||||||||||||||||||||||||||||
Sbjct: 45 atcctgtctgtgggcagacgaccaatgacg 16
>gb|GL893534.1| Sus scrofa unplaced genomic scaffold chrU_scaffold229
Length = 293
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 164 cagcattaggaatggtggtgccacctcctgaaaacgtcagaatgaattcagttaatttca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 cagcattaggaatggtggtgccacctcctgaaaacgtcagaatgaattcagttaatttca 96
Query: 224 agaacattctccagtgggactcacctgcttttccccagggggatctgaccttcacagctc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 agaacattctccagtgggactcacctgcttttccccagggggatctgaccttcacagctc 156
Query: 284 agtatcacag 293
||||||||||
Sbjct: 157 agtatcacag 166
>gb|GL894867.1| Sus scrofa unplaced genomic scaffold chrU_scaffold349
Length = 688
Score = 228 bits (115), Expect = 4e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 291 cagttataggcaattccaggatcagtgtgtgagcatcatcttgacggagtgtgatttctc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cagttataggcaattccaggatcagtgtgtgagcatcatcttgacggagtgtgatttctc 56
Query: 351 aagtctttccaagtacggtgaccacatcttaagagtcagggctgaatttgcagac 405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 aagtctttccaagtacggtgaccacatcttaagagtcagggctgaatttgcagac 1
>gb|GL895134.1| Sus scrofa unplaced genomic scaffold chrU_scaffold373
Length = 808
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 105 tcccggtgcgaccatggcgcggagcctccggaactggctgggcggctgcctactggtgtc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 tcccggtgcgaccatggcgcggagcctccggaactggctgggcggctgcctactggtgtc 103
Query: 165 ag 166
||
Sbjct: 104 ag 105
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,181,469
Number of extensions: 112
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 5
Length of query: 952
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 931
Effective length of database: 2,808,413,156
Effective search space: 2614632648236
Effective search space used: 2614632648236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)