Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004292
(902 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991360.1| sialyltransferase 7B [Bos taurus]. 363 e-100
Alignment gi|NP_001179733.1| alpha-N-acetylgalactosaminide alpha-2,6-sial... 116 2e-26
Alignment gi|XP_002686345.1| PREDICTED: sialyltransferase 7E-like [Bos ta... 116 2e-26
Alignment gi|NP_001001151.2| alpha-N-acetylgalactosaminide alpha-2,6-sial... 91 1e-18
Alignment gi|NP_001008668.2| beta-galactoside alpha-2,6-sialyltransferase... 54 1e-07
Alignment gi|NP_001091452.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 54 2e-07
Alignment gi|NP_001002892.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 53 3e-07
>ref|NP_991360.1| sialyltransferase 7B [Bos taurus].
Length = 323
Score = 363 bits (932), Expect = e-100
Identities = 176/204 (86%), Positives = 180/204 (88%)
Frame = +1
Query: 202 MKPPGRLLFIILCSLGFSGFYILLCCWACLPFCLALCLDPHLSINSRPTVPGPLHFSGYS 381
MK P RLL I+LCS+GFS YILLC WACLPFC A CLDPHLSI SRPTVPGPLHFSGYS
Sbjct: 1 MKAPCRLLLIVLCSVGFSAVYILLCYWACLPFCPAFCLDPHLSIKSRPTVPGPLHFSGYS 60
Query: 382 SVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRST 561
SVPDGKPLVRE CRSCAVV AEID AECVLRMNQAPTVGFEADVG+RST
Sbjct: 61 SVPDGKPLVRELCRSCAVVSSSGQMLGSGLGAEIDSAECVLRMNQAPTVGFEADVGQRST 120
Query: 562 LRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQ 741
LRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQG+HMDR LGGRTYRALLQLTRMYPGLQ
Sbjct: 121 LRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGKHMDRALGGRTYRALLQLTRMYPGLQ 180
Query: 742 VYTFTERMMAYCDQVFQDETGKNR 813
VYTFTERMMAYCDQVFQDETGKNR
Sbjct: 181 VYTFTERMMAYCDQVFQDETGKNR 204
>ref|NP_001179733.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Bos
taurus].
Length = 331
Score = 116 bits (291), Expect = 2e-26
Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Frame = +1
Query: 340 RPTVP-GPLHFSGYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQ 516
RP P GP GY V D KPL + CR CA+V A+ID ECV+RMN
Sbjct: 62 RPETPAGPRPLDGYLGVVDHKPL-KMHCRDCALVTSSGQLLRSRQGAQIDQTECVIRMND 120
Query: 517 APTVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRT 696
APT G+ DVG R++LRVI+H+S+ +LRN ++ T+++ WG +M R+ G+
Sbjct: 121 APTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQV 180
Query: 697 YRALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNR 813
Y L L+++ P L+ + M D++F+ ETGK+R
Sbjct: 181 YNNLQLLSQVLPRLKAFMIARHKMLQFDELFKRETGKDR 219
>ref|XP_002686345.1| PREDICTED: sialyltransferase 7E-like [Bos taurus].
Length = 331
Score = 116 bits (291), Expect = 2e-26
Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Frame = +1
Query: 340 RPTVP-GPLHFSGYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQ 516
RP P GP GY V D KPL + CR CA+V A+ID ECV+RMN
Sbjct: 62 RPETPAGPRPLDGYLGVVDHKPL-KMHCRDCALVTSSGQLLRSRQGAQIDQTECVIRMND 120
Query: 517 APTVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRT 696
APT G+ DVG R++LRVI+H+S+ +LRN ++ T+++ WG +M R+ G+
Sbjct: 121 APTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQV 180
Query: 697 YRALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNR 813
Y L L+++ P L+ + M D++F+ ETGK+R
Sbjct: 181 YNNLQLLSQVLPRLKAFMIARHKMLQFDELFKRETGKDR 219
>ref|NP_001001151.2| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Bos
taurus].
Length = 332
Score = 90.9 bits (224), Expect = 1e-18
Identities = 47/147 (31%), Positives = 75/147 (51%)
Frame = +1
Query: 373 GYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGR 552
GY + K L C C +V EI+ AEC +RMN APT G+ ADVG
Sbjct: 90 GYIPILGNKTLPSR-CGQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGN 148
Query: 553 RSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYP 732
++T RV++H+SV +LR + + +T+++ WG M + G R + + ++P
Sbjct: 149 KTTFRVVAHSSVFHVLRRPQEFVNRTPETVFIFWGPPNKMQKPQGS-LVRVIQRAGLVFP 207
Query: 733 GLQVYTFTERMMAYCDQVFQDETGKNR 813
++ Y + M D +F+ ETGK+R
Sbjct: 208 NMEAYAISLSRMRQFDDLFRSETGKDR 234
>ref|NP_001008668.2| beta-galactoside alpha-2,6-sialyltransferase 2 [Bos taurus].
Length = 495
Score = 54.3 bits (129), Expect = 1e-07
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Frame = +1
Query: 358 PLHFSGYSSVPDGKPLVR---EPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTV 528
P G+ ++ PL R R+CAVV EID + VLR N APT
Sbjct: 242 PFSALGWRALVPPVPLSRLLPRRLRTCAVVTSAGAILNSSLGEEIDSHDAVLRFNSAPTR 301
Query: 529 GFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQA---RDTLYVVW 654
G+E DVG ++T+R+I+ +L N S++F + +D + V W
Sbjct: 302 GYEKDVGNKTTVRIINSQ----ILTNPSYHFMDSALYKDVILVAW 342
>ref|NP_001091452.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Bos taurus].
Length = 339
Score = 53.9 bits (128), Expect = 2e-07
Identities = 29/65 (44%), Positives = 36/65 (55%)
Frame = +1
Query: 418 CRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLL 597
CR CAVV +ID + VLRMN+APT GFEADVGR++T ++ S L
Sbjct: 138 CRRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGFEADVGRKTTHHLVYPESFREL 197
Query: 598 LRNYS 612
N S
Sbjct: 198 AENVS 202
>ref|NP_001002892.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Bos taurus].
Length = 350
Score = 53.1 bits (126), Expect = 3e-07
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +1
Query: 376 YSSVPDGKPL-VREP--CRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADV 546
+ VP P R+P CR CAVV ++DG ++RMNQAPTVGFE DV
Sbjct: 132 FQIVPGENPYRFRDPRQCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDV 191
Query: 547 GRRSTLRVISHTSVPLLLRNYS 612
G R+T + S L N S
Sbjct: 192 GSRTTHHFMYPESAKNLPANVS 213
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,305,751
Number of extensions: 705220
Number of successful extensions: 2837
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2822
Number of HSP's successfully gapped: 7
Length of query: 300
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,306,398
Effective search space: 2832666804
Effective search space used: 2832666804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004292
(902 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851433.1| PREDICTED: similar to Alpha-N-acetyl-neuraminyl... 365 e-103
Alignment gi|XP_547326.2| PREDICTED: similar to ST6 (alpha-N-acetyl-neura... 134 9e-32
Alignment gi|XP_855487.1| PREDICTED: similar to sialyltransferase 7E [Can... 115 4e-26
Alignment gi|XP_850906.1| PREDICTED: similar to ST6 (alpha-N-acetyl-neura... 91 1e-18
Alignment gi|XP_548445.2| PREDICTED: similar to ST6 (alpha-N-acetyl-neura... 91 1e-18
Alignment gi|XP_862583.1| PREDICTED: similar to ST6 (alpha-N-acetyl-neura... 91 1e-18
Alignment gi|XP_538436.2| PREDICTED: similar to beta-galactoside alpha-2,... 57 3e-08
Alignment gi|XP_546834.2| PREDICTED: similar to CMP-N-acetylneuraminate-b... 53 3e-07
Alignment gi|XP_542976.2| PREDICTED: similar to ST3 beta-galactoside alph... 52 6e-07
Alignment gi|XP_539171.2| PREDICTED: similar to CMP-N-acetylneuraminate-b... 50 4e-06
>ref|XP_851433.1| PREDICTED: similar to
Alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase
(NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc-alpha-2,
6-sialyltransferase) (ST6GalNAc IV) (Sialyltransferase
7D) (Sialyltransferase 3C)... [Canis familiaris].
Length = 397
Score = 365 bits (936), Expect(2) = e-103
Identities = 174/201 (86%), Positives = 178/201 (88%)
Frame = +1
Query: 211 PGRLLFIILCSLGFSGFYILLCCWACLPFCLALCLDPHLSINSRPTVPGPLHFSGYSSVP 390
PGRLL IILCSLGFS YILLCCWACLPFC A CLDPHLS +SRPTVPGPLHFSGYSSVP
Sbjct: 99 PGRLLLIILCSLGFSAAYILLCCWACLPFCPASCLDPHLSTHSRPTVPGPLHFSGYSSVP 158
Query: 391 DGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRV 570
DGKPLVREPCRSCAVV AEID AECVLRMNQAPTVGFEADVGRRSTLRV
Sbjct: 159 DGKPLVREPCRSCAVVSSSGQMLGSGLGAEIDSAECVLRMNQAPTVGFEADVGRRSTLRV 218
Query: 571 ISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYT 750
+SHTSVPLLLRNYSHYFQ ARDTLYVVWGQG+HMDR LGGRTYR LLQLT+MYPGLQVYT
Sbjct: 219 VSHTSVPLLLRNYSHYFQHARDTLYVVWGQGKHMDRTLGGRTYRTLLQLTKMYPGLQVYT 278
Query: 751 FTERMMAYCDQVFQDETGKNR 813
FTE MMAYCDQVFQDETGKNR
Sbjct: 279 FTEHMMAYCDQVFQDETGKNR 299
Score = 28.1 bits (61), Expect(2) = e-103
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2
Query: 59 GSRAMELRAADREQ 100
G RAMELRAADREQ
Sbjct: 48 GLRAMELRAADREQ 61
>ref|XP_547326.2| PREDICTED: similar to ST6
(alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
[Canis familiaris].
Length = 231
Score = 134 bits (338), Expect = 9e-32
Identities = 65/147 (44%), Positives = 93/147 (63%)
Frame = +1
Query: 373 GYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGR 552
GY +V +PL + C CA+V EID + C+ RMN APT G+E DVGR
Sbjct: 86 GYINVRTQEPLQLD-CDLCAIVSNSGQMVGQKVGNEIDQSSCIWRMNNAPTKGYEEDVGR 144
Query: 553 RSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYP 732
+ +RV+SHTSVPLLL+N ++F++A T+YV+WG R+M ++ G Y L + +YP
Sbjct: 145 MTMIRVVSHTSVPLLLKNPDYFFKEANATIYVIWGPFRNMRKDGNGIVYNMLKKTVDIYP 204
Query: 733 GLQVYTFTERMMAYCDQVFQDETGKNR 813
Q+Y TE+ M+YCD +F+ ETGK+R
Sbjct: 205 NAQIYVTTEKRMSYCDGIFKKETGKDR 231
>ref|XP_855487.1| PREDICTED: similar to sialyltransferase 7E [Canis familiaris].
Length = 338
Score = 115 bits (289), Expect = 4e-26
Identities = 61/157 (38%), Positives = 90/157 (57%)
Frame = +1
Query: 343 PTVPGPLHFSGYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAP 522
P P PL GY V D KPL + CR CA+V +ID ECV+RMN AP
Sbjct: 73 PAAPRPL--DGYLGVRDRKPL-KMHCRDCALVTSSGHLLRSRQGPQIDQTECVIRMNDAP 129
Query: 523 TVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYR 702
T G+ DVG R++LRVI+H+S+ +LRN ++ T+++ WG +M R+ G+ Y
Sbjct: 130 TRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQVYN 189
Query: 703 ALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNR 813
L L+++ P L+ + T M + D++F+ ETGK+R
Sbjct: 190 NLQLLSQVLPRLKAFMTTRHKMLHFDELFKQETGKDR 226
>ref|XP_850906.1| PREDICTED: similar to ST6
(alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
isoform 3 [Canis familiaris].
Length = 333
Score = 91.3 bits (225), Expect = 1e-18
Identities = 44/140 (31%), Positives = 72/140 (51%)
Frame = +1
Query: 394 GKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVI 573
G + C C +V EI+ AEC +RMN APT G+ ADVG ++T RV+
Sbjct: 97 GNKTLPSRCHQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGNKTTFRVV 156
Query: 574 SHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTF 753
+H+SV +LR + + +T+++ WG M + G R + + ++P ++ Y
Sbjct: 157 AHSSVFRVLRRPQEFVNRTPETVFIFWGPPNKMQKPQGS-LVRVIQRAGLVFPNMEAYAV 215
Query: 754 TERMMAYCDQVFQDETGKNR 813
+ M D +F+ ETGK+R
Sbjct: 216 SPGRMRQFDDLFRGETGKDR 235
>ref|XP_548445.2| PREDICTED: similar to ST6
(alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
isoform 1 [Canis familiaris].
Length = 299
Score = 91.3 bits (225), Expect = 1e-18
Identities = 44/140 (31%), Positives = 72/140 (51%)
Frame = +1
Query: 394 GKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVI 573
G + C C +V EI+ AEC +RMN APT G+ ADVG ++T RV+
Sbjct: 63 GNKTLPSRCHQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGNKTTFRVV 122
Query: 574 SHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTF 753
+H+SV +LR + + +T+++ WG M + G R + + ++P ++ Y
Sbjct: 123 AHSSVFRVLRRPQEFVNRTPETVFIFWGPPNKMQKPQGS-LVRVIQRAGLVFPNMEAYAV 181
Query: 754 TERMMAYCDQVFQDETGKNR 813
+ M D +F+ ETGK+R
Sbjct: 182 SPGRMRQFDDLFRGETGKDR 201
>ref|XP_862583.1| PREDICTED: similar to ST6
(alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
isoform 4 [Canis familiaris].
Length = 271
Score = 91.3 bits (225), Expect = 1e-18
Identities = 44/140 (31%), Positives = 72/140 (51%)
Frame = +1
Query: 394 GKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVI 573
G + C C +V EI+ AEC +RMN APT G+ ADVG ++T RV+
Sbjct: 97 GNKTLPSRCHQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGNKTTFRVV 156
Query: 574 SHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTF 753
+H+SV +LR + + +T+++ WG M + G R + + ++P ++ Y
Sbjct: 157 AHSSVFRVLRRPQEFVNRTPETVFIFWGPPNKMQKPQGS-LVRVIQRAGLVFPNMEAYAV 215
Query: 754 TERMMAYCDQVFQDETGKNR 813
+ M D +F+ ETGK+R
Sbjct: 216 SPGRMRQFDDLFRGETGKDR 235
>ref|XP_538436.2| PREDICTED: similar to beta-galactoside alpha-2,6-sialyltransferase
II [Canis familiaris].
Length = 553
Score = 56.6 bits (135), Expect = 3e-08
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Frame = +1
Query: 358 PLHFSGYSSVPDGKPLVR---EPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTV 528
P G+ + PL R RSCAVV EID + VLR N APT
Sbjct: 47 PFAALGWRKLVPAVPLSRLHPRGLRSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTR 106
Query: 529 GFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQA---RDTLYVVW 654
G+E DVG ++T+R+I+ +L N SH+F + +D + V W
Sbjct: 107 GYEKDVGNKTTVRIINSQ----ILTNPSHHFIDSSLYKDVILVAW 147
>ref|XP_546834.2| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalA.2) (SIAT4-B) (ST3Gal II)... [Canis familiaris].
Length = 350
Score = 53.1 bits (126), Expect = 3e-07
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +1
Query: 376 YSSVPDGKPL-VREP--CRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADV 546
+ VP P R+P CR CAVV ++DG ++RMNQAPTVGFE DV
Sbjct: 132 FQIVPGENPYRFRDPHQCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDV 191
Query: 547 GRRSTLRVISHTSVPLLLRNYS 612
G R+T + S L N S
Sbjct: 192 GSRTTHHFMYPESAKNLPANVS 213
>ref|XP_542976.2| PREDICTED: similar to ST3 beta-galactoside
alpha-2,3-sialyltransferase 2 isoform 2 [Canis
familiaris].
Length = 236
Score = 52.4 bits (124), Expect = 6e-07
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 388 PDGKPL--VREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRST 561
P G+PL V CR+CAVV I+ + VLRMNQAP GFE DVG +T
Sbjct: 23 PPGQPLGYVESSCRTCAVVGNSRCLRGSGHGFRINQNDMVLRMNQAPVQGFEMDVGNTTT 82
Query: 562 LRVI 573
+R++
Sbjct: 83 MRIM 86
>ref|XP_539171.2| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... iso [Canis
familiaris].
Length = 342
Score = 49.7 bits (117), Expect = 4e-06
Identities = 27/65 (41%), Positives = 34/65 (52%)
Frame = +1
Query: 418 CRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLL 597
CR CAVV +ID + VLRMN+APT GFE DVG ++T ++ S L
Sbjct: 141 CRRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGFEMDVGSKTTHHLVYPESFREL 200
Query: 598 LRNYS 612
N S
Sbjct: 201 AENVS 205
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,165,909
Number of extensions: 688130
Number of successful extensions: 2766
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2735
Number of HSP's successfully gapped: 12
Length of query: 300
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 198
Effective length of database: 15,474,232
Effective search space: 3063897936
Effective search space used: 3063897936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004292
(902 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_778204.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1... 351 4e-97
Alignment gi|NP_778205.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1... 221 7e-58
Alignment gi|NP_694541.2| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 135 4e-32
Alignment gi|NP_001153483.1| alpha-N-acetylgalactosaminide alpha-2,6-sial... 134 1e-31
Alignment gi|NP_112227.1| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 120 2e-27
Alignment gi|NP_038471.2| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 91 1e-18
Alignment gi|NP_001135824.1| beta-galactoside alpha-2,6-sialyltransferase... 57 3e-08
Alignment gi|NP_001135823.1| beta-galactoside alpha-2,6-sialyltransferase... 57 3e-08
Alignment gi|NP_115917.1| beta-galactoside alpha-2,6-sialyltransferase 2 ... 57 3e-08
Alignment gi|NP_008858.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 53 3e-07
>ref|NP_778204.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase
isoform a [Homo sapiens].
Length = 302
Score = 351 bits (901), Expect = 4e-97
Identities = 168/204 (82%), Positives = 175/204 (85%)
Frame = +1
Query: 202 MKPPGRLLFIILCSLGFSGFYILLCCWACLPFCLALCLDPHLSINSRPTVPGPLHFSGYS 381
MK PGRL+ IILCS+ FS YILLCCWA LP CLA CLD H SRPTVPGPLHFSGYS
Sbjct: 1 MKAPGRLVLIILCSVVFSAVYILLCCWAGLPLCLATCLDHHFPTGSRPTVPGPLHFSGYS 60
Query: 382 SVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRST 561
SVPDGKPLVREPCRSCAVV AEID AECV RMNQAPTVGFEADVG+RST
Sbjct: 61 SVPDGKPLVREPCRSCAVVSSSGQMLGSGLGAEIDSAECVFRMNQAPTVGFEADVGQRST 120
Query: 562 LRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQ 741
LRV+SHTSVPLLLRNYSHYFQ+ARDTLY+VWGQGRHMDR LGGRTYR LLQLTRMYPGLQ
Sbjct: 121 LRVVSHTSVPLLLRNYSHYFQKARDTLYMVWGQGRHMDRVLGGRTYRTLLQLTRMYPGLQ 180
Query: 742 VYTFTERMMAYCDQVFQDETGKNR 813
VYTFTERMMAYCDQ+FQDETGKNR
Sbjct: 181 VYTFTERMMAYCDQIFQDETGKNR 204
>ref|NP_778205.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase
isoform b [Homo sapiens].
Length = 218
Score = 221 bits (563), Expect = 7e-58
Identities = 104/113 (92%), Positives = 109/113 (96%)
Frame = +1
Query: 475 AEIDGAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVW 654
AEID AECV RMNQAPTVGFEADVG+RSTLRV+SHTSVPLLLRNYSHYFQ+ARDTLY+VW
Sbjct: 8 AEIDSAECVFRMNQAPTVGFEADVGQRSTLRVVSHTSVPLLLRNYSHYFQKARDTLYMVW 67
Query: 655 GQGRHMDRELGGRTYRALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNR 813
GQGRHMDR LGGRTYR LLQLTRMYPGLQVYTFTERMMAYCDQ+FQDETGKNR
Sbjct: 68 GQGRHMDRVLGGRTYRTLLQLTRMYPGLQVYTFTERMMAYCDQIFQDETGKNR 120
>ref|NP_694541.2| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 isoform
1 [Homo sapiens].
Length = 305
Score = 135 bits (341), Expect = 4e-32
Identities = 66/147 (44%), Positives = 93/147 (63%)
Frame = +1
Query: 373 GYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGR 552
GY +V +PL + C CA+V EID + C+ RMN APT G+E DVGR
Sbjct: 63 GYINVKTQEPLQLD-CDLCAIVSNSGQMVGQKVGNEIDRSSCIWRMNNAPTKGYEEDVGR 121
Query: 553 RSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYP 732
+ +RV+SHTSVPLLL+N ++F++A T+YV+WG R+M ++ G Y L + +YP
Sbjct: 122 MTMIRVVSHTSVPLLLKNPDYFFKEANTTIYVIWGPFRNMRKDGNGIVYNMLKKTVGIYP 181
Query: 733 GLQVYTFTERMMAYCDQVFQDETGKNR 813
Q+Y TE+ M+YCD VF+ ETGK+R
Sbjct: 182 NAQIYVTTEKRMSYCDGVFKKETGKDR 208
>ref|NP_001153483.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 isoform
2 [Homo sapiens].
Length = 210
Score = 134 bits (336), Expect = 1e-31
Identities = 65/146 (44%), Positives = 92/146 (63%)
Frame = +1
Query: 373 GYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGR 552
GY +V +PL + C CA+V EID + C+ RMN APT G+E DVGR
Sbjct: 63 GYINVKTQEPLQLD-CDLCAIVSNSGQMVGQKVGNEIDRSSCIWRMNNAPTKGYEEDVGR 121
Query: 553 RSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYP 732
+ +RV+SHTSVPLLL+N ++F++A T+YV+WG R+M ++ G Y L + +YP
Sbjct: 122 MTMIRVVSHTSVPLLLKNPDYFFKEANTTIYVIWGPFRNMRKDGNGIVYNMLKKTVGIYP 181
Query: 733 GLQVYTFTERMMAYCDQVFQDETGKN 810
Q+Y TE+ M+YCD VF+ ETGK+
Sbjct: 182 NAQIYVTTEKRMSYCDGVFKKETGKD 207
>ref|NP_112227.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Homo
sapiens].
Length = 336
Score = 120 bits (301), Expect = 2e-27
Identities = 64/163 (39%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Frame = +1
Query: 328 SINSRPTVP-GPLHFSGYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVL 504
S RP VP GP GY V D KPL + CR CA+V ++ID ECV+
Sbjct: 63 STQQRPGVPAGPRPLDGYLGVADHKPL-KMHCRDCALVTSSGHLLHSRQGSQIDQTECVI 121
Query: 505 RMNQAPTVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDREL 684
RMN APT G+ DVG R++LRVI+H+S+ +LRN ++ T+++ WG +M R+
Sbjct: 122 RMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDG 181
Query: 685 GGRTYRALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNR 813
G+ Y L L+++ P L+ + T M D++F+ ETGK+R
Sbjct: 182 KGQVYNNLHLLSQVLPRLKAFMITRHKMLQFDELFKQETGKDR 224
>ref|NP_038471.2| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Homo
sapiens].
Length = 333
Score = 90.9 bits (224), Expect = 1e-18
Identities = 47/147 (31%), Positives = 75/147 (51%)
Frame = +1
Query: 373 GYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGR 552
GY + K L C C +V EI+ AEC +RMN APT G+ ADVG
Sbjct: 91 GYVPILGNKTLPSR-CHQCVIVSSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGN 149
Query: 553 RSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYP 732
++T RV++H+SV +LR + + +T+++ WG M + G R + + ++P
Sbjct: 150 KTTYRVVAHSSVFRVLRRPQEFVNRTPETVFIFWGPPSKMQKPQGS-LVRVIQRAGLVFP 208
Query: 733 GLQVYTFTERMMAYCDQVFQDETGKNR 813
++ Y + M D +F+ ETGK+R
Sbjct: 209 NMEAYAVSPGRMRQFDDLFRGETGKDR 235
>ref|NP_001135824.1| beta-galactoside alpha-2,6-sialyltransferase 2 isoform b [Homo
sapiens].
Length = 466
Score = 56.6 bits (135), Expect = 3e-08
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +1
Query: 421 RSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLLL 600
RSCAVV EID + VLR N APT G+E DVG ++T+R+I+ +L
Sbjct: 294 RSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQ----IL 349
Query: 601 RNYSHYFQQA---RDTLYVVW 654
N SH+F + +D + V W
Sbjct: 350 TNPSHHFIDSSLYKDVILVAW 370
>ref|NP_001135823.1| beta-galactoside alpha-2,6-sialyltransferase 2 isoform a [Homo
sapiens].
Length = 529
Score = 56.6 bits (135), Expect = 3e-08
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +1
Query: 421 RSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLLL 600
RSCAVV EID + VLR N APT G+E DVG ++T+R+I+ +L
Sbjct: 294 RSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQ----IL 349
Query: 601 RNYSHYFQQA---RDTLYVVW 654
N SH+F + +D + V W
Sbjct: 350 TNPSHHFIDSSLYKDVILVAW 370
>ref|NP_115917.1| beta-galactoside alpha-2,6-sialyltransferase 2 isoform a [Homo
sapiens].
Length = 529
Score = 56.6 bits (135), Expect = 3e-08
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +1
Query: 421 RSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLLL 600
RSCAVV EID + VLR N APT G+E DVG ++T+R+I+ +L
Sbjct: 294 RSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQ----IL 349
Query: 601 RNYSHYFQQA---RDTLYVVW 654
N SH+F + +D + V W
Sbjct: 350 TNPSHHFIDSSLYKDVILVAW 370
>ref|NP_008858.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Homo sapiens].
Length = 350
Score = 53.1 bits (126), Expect = 3e-07
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +1
Query: 376 YSSVPDGKPL-VREP--CRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADV 546
+ VP P R+P CR CAVV ++DG ++RMNQAPTVGFE DV
Sbjct: 132 FQIVPGENPYRFRDPHQCRRCAVVGNSGNLRGSGYGQDVDGHNFIMRMNQAPTVGFEQDV 191
Query: 547 GRRSTLRVISHTSVPLLLRNYS 612
G R+T + S L N S
Sbjct: 192 GSRTTHHFMYPESAKNLPANVS 213
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,552,590
Number of extensions: 662714
Number of successful extensions: 2800
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2790
Number of HSP's successfully gapped: 12
Length of query: 300
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,934,836
Effective search space: 2957097528
Effective search space used: 2957097528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004292
(902 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035503.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1... 340 1e-93
Alignment gi|NP_035502.1| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 135 4e-32
Alignment gi|NP_036158.3| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 115 5e-26
Alignment gi|NP_001020482.1| alpha-N-acetylgalactosaminide alpha-2,6-sial... 92 5e-19
Alignment gi|NP_001020481.1| alpha-N-acetylgalactosaminide alpha-2,6-sial... 92 5e-19
Alignment gi|NP_058669.1| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 92 5e-19
Alignment gi|NP_766417.1| beta-galactoside alpha-2,6-sialyltransferase 2 ... 57 3e-08
Alignment gi|NP_033203.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 54 2e-07
Alignment gi|NP_033205.2| CMP-N-acetylneuraminate-beta-galactosamide-alph... 52 6e-07
>ref|NP_035503.1| alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase
[Mus musculus].
Length = 302
Score = 340 bits (871), Expect = 1e-93
Identities = 163/204 (79%), Positives = 169/204 (82%)
Frame = +1
Query: 202 MKPPGRLLFIILCSLGFSGFYILLCCWACLPFCLALCLDPHLSINSRPTVPGPLHFSGYS 381
MK PGRLL + LC L FS + LCCWACLP CLA CLD HL R TVPGPLHFSGYS
Sbjct: 1 MKAPGRLLLLTLCILTFSAVCVFLCCWACLPLCLATCLDRHLPAAPRSTVPGPLHFSGYS 60
Query: 382 SVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRST 561
SVPDGKPL+RE C SCAVV A+IDGAECVLRMNQAPTVGFE DVG+RST
Sbjct: 61 SVPDGKPLIRELCHSCAVVSSSGQMLGSGLGAQIDGAECVLRMNQAPTVGFEEDVGQRST 120
Query: 562 LRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQ 741
LRVISHTSVPLLLRNYSHYFQ ARDTLYVVWGQGRHMDR LGGRTYR LLQLTRMYPGLQ
Sbjct: 121 LRVISHTSVPLLLRNYSHYFQHARDTLYVVWGQGRHMDRVLGGRTYRTLLQLTRMYPGLQ 180
Query: 742 VYTFTERMMAYCDQVFQDETGKNR 813
VYTFTERMMAYCDQ+FQDETGKNR
Sbjct: 181 VYTFTERMMAYCDQIFQDETGKNR 204
>ref|NP_035502.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Mus
musculus].
Length = 305
Score = 135 bits (340), Expect = 4e-32
Identities = 83/217 (38%), Positives = 111/217 (51%), Gaps = 14/217 (6%)
Frame = +1
Query: 205 KPPGRLLFIILCSL-------GFSGFYILLCC-------WACLPFCLALCLDPHLSINSR 342
KP + FI LC L + F +LL C W LP+ L H
Sbjct: 8 KPVLVVSFIALCILLLAMRLVNDATFPLLLNCFGQPKTKWIPLPYTFRQPLRTHY----- 62
Query: 343 PTVPGPLHFSGYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAP 522
GY +V +PL C CA+V EID A C+ RMN AP
Sbjct: 63 ----------GYINVRTQEPLQLN-CNHCAIVSNSGQMVGQKVGEEIDHASCIWRMNNAP 111
Query: 523 TVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYR 702
T GFE DVG + +RV+SHTSVPLLL+N ++F++A T+YV+WG R+M ++ G Y
Sbjct: 112 TKGFEEDVGYMTMVRVVSHTSVPLLLKNPDYFFKEASRTIYVIWGPFRNMRKDGNGIVYN 171
Query: 703 ALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNR 813
L + YP Q+Y TE+ M +CD+VF+DETGK+R
Sbjct: 172 MLKKTVDAYPDAQIYVTTEQQMTHCDRVFKDETGKDR 208
>ref|NP_036158.3| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Mus
musculus].
Length = 335
Score = 115 bits (288), Expect = 5e-26
Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Frame = +1
Query: 340 RPTVP-GPLHFSGYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQ 516
R T P GP GY V D KPL + C+ CA+V ID ECV+RMN
Sbjct: 66 RRTAPAGPRQLEGYLGVADHKPL-KMHCKDCALVTSSGHLLRSQQGPHIDQTECVIRMND 124
Query: 517 APTVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRT 696
APT G+ DVG R++LRVI+H+S+ +LRN ++ T+++ WG +M R+ G+
Sbjct: 125 APTRGYGLDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQA 184
Query: 697 YRALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNR 813
Y L L+++ P L+ + T M D++F+ ETGK+R
Sbjct: 185 YNNLQLLSQVLPRLKAFMITRHRMLQFDELFKQETGKDR 223
>ref|NP_001020482.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform
3 [Mus musculus].
Length = 313
Score = 92.0 bits (227), Expect = 5e-19
Identities = 44/140 (31%), Positives = 72/140 (51%)
Frame = +1
Query: 394 GKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVI 573
G + C C ++ EI+ AEC +RMN APT G+ ADVG ++T RV+
Sbjct: 77 GNKTLPSRCNQCVIITSSSHLLGTKLGPEIERAECTIRMNDAPTSGYSADVGNKTTFRVV 136
Query: 574 SHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTF 753
+H+SV +LR + + +T+++ WG M + G R + + M+P ++ Y
Sbjct: 137 AHSSVFRVLRKPQEFVNRTPETVFIFWGPPNKMQKPQGS-LLRVIQRAGLMFPNMEAYAV 195
Query: 754 TERMMAYCDQVFQDETGKNR 813
+ M D +F+ ETGK+R
Sbjct: 196 SPARMQQFDDLFRGETGKDR 215
>ref|NP_001020481.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform
2 [Mus musculus].
Length = 299
Score = 92.0 bits (227), Expect = 5e-19
Identities = 44/140 (31%), Positives = 72/140 (51%)
Frame = +1
Query: 394 GKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVI 573
G + C C ++ EI+ AEC +RMN APT G+ ADVG ++T RV+
Sbjct: 63 GNKTLPSRCNQCVIITSSSHLLGTKLGPEIERAECTIRMNDAPTSGYSADVGNKTTFRVV 122
Query: 574 SHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTF 753
+H+SV +LR + + +T+++ WG M + G R + + M+P ++ Y
Sbjct: 123 AHSSVFRVLRKPQEFVNRTPETVFIFWGPPNKMQKPQGS-LLRVIQRAGLMFPNMEAYAV 181
Query: 754 TERMMAYCDQVFQDETGKNR 813
+ M D +F+ ETGK+R
Sbjct: 182 SPARMQQFDDLFRGETGKDR 201
>ref|NP_058669.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform
1 [Mus musculus].
Length = 333
Score = 92.0 bits (227), Expect = 5e-19
Identities = 44/140 (31%), Positives = 72/140 (51%)
Frame = +1
Query: 394 GKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVI 573
G + C C ++ EI+ AEC +RMN APT G+ ADVG ++T RV+
Sbjct: 97 GNKTLPSRCNQCVIITSSSHLLGTKLGPEIERAECTIRMNDAPTSGYSADVGNKTTFRVV 156
Query: 574 SHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTF 753
+H+SV +LR + + +T+++ WG M + G R + + M+P ++ Y
Sbjct: 157 AHSSVFRVLRKPQEFVNRTPETVFIFWGPPNKMQKPQGS-LLRVIQRAGLMFPNMEAYAV 215
Query: 754 TERMMAYCDQVFQDETGKNR 813
+ M D +F+ ETGK+R
Sbjct: 216 SPARMQQFDDLFRGETGKDR 235
>ref|NP_766417.1| beta-galactoside alpha-2,6-sialyltransferase 2 [Mus musculus].
Length = 438
Score = 56.6 bits (135), Expect = 3e-08
Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Frame = +1
Query: 319 PHLSINSRPTVPG----PLHFSGYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEID 486
P + RP VPG LH G SS CAVV EID
Sbjct: 265 PFSGLGWRPLVPGVPLSQLHPRGLSS--------------CAVVMSAGAILNSSLGEEID 310
Query: 487 GAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQA---RDTLYVVW 654
+ VLR N APT G+E DVG ++T+R+I+ +L N SH+F + +D + V W
Sbjct: 311 SHDAVLRFNSAPTRGYEKDVGNKTTVRIINSQ----ILANPSHHFIDSALYKDVILVAW 365
>ref|NP_033203.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Mus musculus].
Length = 337
Score = 53.5 bits (127), Expect = 2e-07
Identities = 27/52 (51%), Positives = 32/52 (61%)
Frame = +1
Query: 418 CRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVI 573
CR CAVV EID + VLRMN+APTVGFEADVG R+T ++
Sbjct: 136 CRRCAVVGNSGNLKDSSYGPEIDSHDFVLRMNKAPTVGFEADVGSRTTHHLV 187
>ref|NP_033205.2| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Mus musculus].
Length = 350
Score = 52.0 bits (123), Expect = 6e-07
Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +1
Query: 376 YSSVPDGKPL-VREP--CRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADV 546
+ VP P R+P CR CAVV E+D ++RMNQAPTVGFE DV
Sbjct: 132 FQIVPGENPYRFRDPQQCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAPTVGFEKDV 191
Query: 547 GRRSTLRVISHTSVPLLLRNYS 612
G R+T + S L N S
Sbjct: 192 GSRTTHHFMYPESAKNLPANVS 213
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,146,725
Number of extensions: 545159
Number of successful extensions: 2217
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2188
Number of HSP's successfully gapped: 9
Length of query: 300
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 199
Effective length of database: 12,583,923
Effective search space: 2504200677
Effective search space used: 2504200677
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004292
(902 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998949.1| alpha-N-acetylgalactosaminide alpha-2,6-sialylt... 400 e-112
Alignment gi|XP_003356475.1| PREDICTED: alpha-N-acetylgalactosaminide alp... 130 1e-30
Alignment gi|NP_999601.1| beta-galactosamide alpha-2,6-sialyltransferase ... 117 1e-26
Alignment gi|XP_003122237.2| PREDICTED: alpha-N-acetylgalactosaminide alp... 92 5e-19
Alignment gi|XP_003124903.1| PREDICTED: beta-galactoside alpha-2,6-sialyl... 57 1e-08
Alignment gi|XP_003361349.1| PREDICTED: CMP-N-acetylneuraminate-beta-gala... 53 2e-07
Alignment gi|NP_001004047.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 49 5e-06
>ref|NP_998949.1| alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 [Sus
scrofa].
Length = 302
Score = 400 bits (1029), Expect = e-112
Identities = 192/204 (94%), Positives = 192/204 (94%)
Frame = +1
Query: 202 MKPPGRLLFIILCSLGFSGFYILLCCWACLPFCLALCLDPHLSINSRPTVPGPLHFSGYS 381
MKPPGRLLFIILCSLGFSGFYILLCCWACLPFCLALCLDPHLSINSRPTVPGPLHFSGYS
Sbjct: 1 MKPPGRLLFIILCSLGFSGFYILLCCWACLPFCLALCLDPHLSINSRPTVPGPLHFSGYS 60
Query: 382 SVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRST 561
SVPDGKPLVREPCRSCAVV AEIDGAECVLRMNQAPTVGFEADVGRRST
Sbjct: 61 SVPDGKPLVREPCRSCAVVSSSGQMLGSGLGAEIDGAECVLRMNQAPTVGFEADVGRRST 120
Query: 562 LRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQ 741
LRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQ
Sbjct: 121 LRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQ 180
Query: 742 VYTFTERMMAYCDQVFQDETGKNR 813
VYTFTERMMAYCDQVFQDETGKNR
Sbjct: 181 VYTFTERMMAYCDQVFQDETGKNR 204
>ref|XP_003356475.1| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 3-like [Sus scrofa].
Length = 162
Score = 130 bits (326), Expect = 1e-30
Identities = 60/132 (45%), Positives = 84/132 (63%)
Frame = +1
Query: 418 CRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLL 597
C CA+V EID + C+ RMN APT G+E DVG + +RV+SHTSVPLL
Sbjct: 31 CNLCAIVSNSGQMVGQKVGNEIDQSSCIWRMNNAPTKGYEEDVGHMTRIRVVSHTSVPLL 90
Query: 598 LRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTFTERMMAYC 777
L+N ++F++A T+YV+WG R+M ++ G Y L + +YP Q+Y TE+ M+YC
Sbjct: 91 LKNPDYFFKEANTTIYVIWGPFRNMRKDGNGIVYNMLKKTVDIYPHAQIYVTTEKRMSYC 150
Query: 778 DQVFQDETGKNR 813
D VF+ ETGK+R
Sbjct: 151 DGVFKKETGKDR 162
>ref|NP_999601.1| beta-galactosamide alpha-2,6-sialyltransferase [Sus scrofa].
Length = 332
Score = 117 bits (292), Expect = 1e-26
Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Frame = +1
Query: 340 RPTVP-GPLHFSGYSSVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQ 516
RP P GP GY V D KPL + CR CA+V +ID ECV+RMN
Sbjct: 63 RPETPAGPRPLEGYLGVADHKPL-KMHCRDCALVTSSGHLLRSHQGPQIDKTECVIRMND 121
Query: 517 APTVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRT 696
APT G+ DVG R++LRVI+H+S+ +LRN ++ T+++ WG +M R+ G+
Sbjct: 122 APTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQGTVFIFWGPSSYMRRDGKGQV 181
Query: 697 YRALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNR 813
Y L L+++ P L+ + T M D++F+ ETGK+R
Sbjct: 182 YNNLQLLSQVLPRLKAFMITRHKMLQFDELFKRETGKDR 220
>ref|XP_003122237.2| PREDICTED: alpha-N-acetylgalactosaminide
alpha-2,6-sialyltransferase 6-like [Sus scrofa].
Length = 299
Score = 91.7 bits (226), Expect = 5e-19
Identities = 45/140 (32%), Positives = 72/140 (51%)
Frame = +1
Query: 394 GKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVI 573
G + C C +V EI+ AEC +RMN APT G+ ADVG ++T RV+
Sbjct: 63 GNKTLPSRCHQCVIVTSSSHLLGTKLGPEIERAECTIRMNDAPTTGYSADVGNKTTFRVV 122
Query: 574 SHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTF 753
+H+SV +LR + + +T+++ WG M + G R + + ++P L+ Y
Sbjct: 123 AHSSVFRVLRKPQEFVNRTPETVFIFWGPPNKMQKPQGS-LVRVIQRAGLVFPNLEAYAV 181
Query: 754 TERMMAYCDQVFQDETGKNR 813
+ M D +F+ ETGK+R
Sbjct: 182 SLGRMRQFDDLFRSETGKDR 201
>ref|XP_003124903.1| PREDICTED: beta-galactoside alpha-2,6-sialyltransferase 2-like [Sus
scrofa].
Length = 503
Score = 57.0 bits (136), Expect = 1e-08
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Frame = +1
Query: 382 SVPDGKPLVREPCRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRST 561
+VP G+ L R RSCAVV EID + VLR N APT G+E DVG ++T
Sbjct: 262 AVPLGQLLPRG-LRSCAVVTSAGAILNSSLGEEIDSHDAVLRFNSAPTHGYEKDVGNKTT 320
Query: 562 LRVISHTSVPLLLRNYSHYFQQA---RDTLYVVW 654
+R+I+ +L N +H+F + +D + V W
Sbjct: 321 IRIINSQ----ILTNPNHHFIDSSLYKDVILVAW 350
>ref|XP_003361349.1| PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Sus scrofa].
Length = 335
Score = 53.1 bits (126), Expect = 2e-07
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +1
Query: 376 YSSVPDGKPL-VREP--CRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADV 546
+ VP P R+P CR CAVV ++DG ++RMNQAPTVGFE DV
Sbjct: 132 FQIVPGENPYRFRDPHQCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAPTVGFEQDV 191
Query: 547 GRRSTLRVISHTSVPLLLRNYS 612
G R+T + S L N S
Sbjct: 192 GSRTTHHFMYPESAKNLPANVS 213
>ref|NP_001004047.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Sus scrofa].
Length = 343
Score = 48.5 bits (114), Expect = 5e-06
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = +1
Query: 418 CRSCAVVXXXXXXXXXXXXAEIDGAECVLRMNQAPTVGFEADVGRRST 561
CR CAVV +ID + VLRMN+APT GFEADVG ++T
Sbjct: 142 CRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADVGSKTT 189
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,023,541
Number of extensions: 502362
Number of successful extensions: 1866
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1860
Number of HSP's successfully gapped: 7
Length of query: 300
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,904,026
Effective search space: 1798613252
Effective search space used: 1798613252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004292
(902 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 886 0.0
Sscrofa_Chr11 101 6e-19
>Sscrofa_Chr01
|| Length = 315321322
Score = 886 bits (447), Expect = 0.0
Identities = 450/451 (99%)
Strand = Plus / Minus
Query: 398 agccgctggtccgagagccctgccgcagctgtgccgtggtgtccagctcgggccagatgc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302318540 agccgctggtccgagagccctgccgcagctgtgccgtggtgtccagctcgggccagatgc 302318481
Query: 458 tgggctcgggcctgggcgccgagatcgatggtgctgagtgcgtgctgcgcatgaaccagg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302318480 tgggctcgggcctgggcgccgagatcgatggtgctgagtgcgtgctgcgcatgaaccagg 302318421
Query: 518 cgcccaccgtgggcttcgaggcggacgtgggtcggcgcagcaccctgcgggtcatctccc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302318420 cgcccaccgtgggcttcgaggcggacgtgggtcggcgcagcaccctgcgggtcatctccc 302318361
Query: 578 acacgagcgtgccactgctgctgcgcaactactcccactacttccagcaggcccgcgaca 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302318360 acacgagcgtgccactgctgctgcgcaactactcccactacttccagcaggcccgcgaca 302318301
Query: 638 cgctctacgtggtgtgggggcagggcaggcacatggaccgcgagctgggcggccgcacct 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302318300 cgctctacgtggtgtgggggcagggcaggcacatggaccgcgagctgggcggccgcacct 302318241
Query: 698 accgcgccctgctgcagctcaccaggatgtacccaggcctgcaggtgtacaccttcaccg 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302318240 accgcgccctgctgcagctcaccaggatgtacccaggcctgcaggtgtacaccttcaccg 302318181
Query: 758 agcgcatgatggcctactgcgaccaggtcttccaggacgagacgggcaagaaccggtgag 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302318180 agcgcatgatggcctactgcgaccaggtcttccaggacgagacgggcaagaaccggtgag 302318121
Query: 818 ctgggggcctggcggctggggtctccctgct 848
||||||||||| |||||||||||||||||||
Sbjct: 302318120 ctgggggcctgccggctggggtctccctgct 302318090
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 36 tccggcttccagtccggcagtccggctcacgggccatggagctccgagcagcggatcggg 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302324716 tccggcttccagtccggcagtccggctcacgggccatggagctccgagcagcggatcggg 302324657
Query: 96 agcagccggcccgtcccaagccgccctccaggt 128
|||||||||||||||||||||||||||||||||
Sbjct: 302324656 agcagccggcccgtcccaagccgccctccaggt 302324624
Score = 180 bits (91), Expect = 9e-43
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 124 caggtccccggctccggtcccttcccggcctgatccctggaggcagcagccaccagcctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302324207 caggtccccggctccggtcccttcccggcctgatccctggaggcagcagccaccagcctg 302324148
Query: 184 ctgagtagcagcgacagcatgaagcctccag 214
|||||||||||||||||||||||||||||||
Sbjct: 302324147 ctgagtagcagcgacagcatgaagcctccag 302324117
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 316 gacccccacctctccatcaactccaggcccactgtgccagggcccctgcacttcagtgga 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302322633 gacccccacctctccatcaactccaggcccactgtgccagggcccctgcacttcagtgga 302322574
Query: 376 tacagcagtgtgccagatgggaag 399
||||||||||||||||||||||||
Sbjct: 302322573 tacagcagtgtgccagatgggaag 302322550
Score = 105 bits (53), Expect = 4e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 214 ggtcggctcctcttcatcatcctctgctccctgggcttctctggcttctacat 266
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302322735 ggtcggctcctcttcatcatcctctgctccctgggcttctctggcttctacat 302322683
>Sscrofa_Chr11
|| Length = 87690581
Score = 101 bits (51), Expect = 6e-19
Identities = 85/95 (89%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 326 tctccatcaactccaggcccactgtgccagggcccctgcacttcagtggatacagcagtg 385
||||||||||||||||||||||||| | |||||||||||| ||||||||||||||
Sbjct: 24670550 tctccatcaactccaggcccactgtaaaggagcccctgcactttagtggatacagcagc- 24670608
Query: 386 tgccagatgggaagccgctggtccgagagccctgc 420
||||||||||||||| ||||||| |||||||||||
Sbjct: 24670609 tgccagatgggaagctgctggtcggagagccctgc 24670643
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,998,832
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 7
Length of query: 902
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 881
Effective length of database: 2,808,413,156
Effective search space: 2474211990436
Effective search space used: 2474211990436
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)