Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004301
(1274 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069678.1| hexaprenyldihydroxybenzoate methyltransferas... 624 e-179
>ref|NP_001069678.1| hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Bos
taurus].
Length = 370
Score = 624 bits (1610), Expect = e-179
Identities = 311/370 (84%), Positives = 327/370 (88%), Gaps = 1/370 (0%)
Frame = +1
Query: 13 MWRGCKXXXXXXXXXXXXXXVYRGTRADCPRLTTSAVCSKNQLSWTLQIKPWVVNEYRIM 192
MW G K ++ T+ D RLTTSAV KNQLSW LQIKPWV NE RIM
Sbjct: 1 MWGGSKLSSSGSRFLGALRSGFQSTQVDSSRLTTSAVYPKNQLSWILQIKPWVFNENRIM 60
Query: 193 WFKSCSMNFAFLNRMKSYRLPWIRPYSTSRSTVDSNEVKTFLALAHRWWDEQGVYAPLHS 372
WFKS S+ FA LN MKSYRLPW RPYSTSR+TVD NE+KTFLALAHRWWDEQGVYAPLHS
Sbjct: 61 WFKSYSITFACLNWMKSYRLPWTRPYSTSRTTVDKNEMKTFLALAHRWWDEQGVYAPLHS 120
Query: 373 MNDLRVPFIRDNLLKTVANHQPGKPLSGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDE 552
MNDLRVPFIRDNLL+TVA HQPGKPLSGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDE
Sbjct: 121 MNDLRVPFIRDNLLRTVATHQPGKPLSGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDE 180
Query: 553 NIKTAQHHKSFDPVLDKRIEYRACSLEEIVEETAETFDAVVASEVVEHVIDLETFIQCCC 732
NIKTAQHHKSFDPVLDKRIEYR CSLEEIV++T ETFDAVVASEVVEHVIDLETFIQCC
Sbjct: 181 NIKTAQHHKSFDPVLDKRIEYRTCSLEEIVKDTVETFDAVVASEVVEHVIDLETFIQCCF 240
Query: 733 QVLKPGGSLFITTINKTQLSYALGIVFAEQIAGIVPKGTHTWEKFVSPEKLESILESNGL 912
QVLKP GSLFITTINKTQLSYALGIVF+EQIAGIVPKGTHTWEKFVSPEKLESILESNGL
Sbjct: 241 QVLKPDGSLFITTINKTQLSYALGIVFSEQIAGIVPKGTHTWEKFVSPEKLESILESNGL 300
Query: 913 SVQTVTGMLYNPFSGYWHWSENTSLNYAAYAVKSSVQEHSGP-EFALKGEREELRAEAST 1089
SVQTV GMLYNPFSGYWHWSENTSLNYAA+A+KSS+QE P EFALKGE EEL+AEAST
Sbjct: 301 SVQTVVGMLYNPFSGYWHWSENTSLNYAAHALKSSLQEQPAPAEFALKGEAEELQAEAST 360
Query: 1090 NSGVREELKK 1119
NSGV+E+LKK
Sbjct: 361 NSGVQEDLKK 370
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,629,724
Number of extensions: 1054901
Number of successful extensions: 3715
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3698
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 319
Effective length of database: 14,207,134
Effective search space: 4532075746
Effective search space used: 4532075746
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004301
(1274 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532241.2| PREDICTED: similar to Hexaprenyldihydroxybenzoa... 599 e-171
>ref|XP_532241.2| PREDICTED: similar to Hexaprenyldihydroxybenzoate methyltransferase,
mitochondrial precursor (Dihydroxyhexaprenylbenzoate
methyltransferase) (3,4-dihydroxy-5-hexaprenylbenzoate
methyltransferase) (DHHB methyltransferase) (DHHB-MT)
(DHHB-MTase)... [Canis familiaris].
Length = 367
Score = 599 bits (1545), Expect = e-171
Identities = 301/370 (81%), Positives = 316/370 (85%), Gaps = 1/370 (0%)
Frame = +1
Query: 13 MWRGCKXXXXXXXXXXXXXXVYRGTRADCPRLTTSAVCSKNQLSWTLQIKPWVVNEYRIM 192
MW G K RG RA R T A + Q SWT Q KPWV ++YRIM
Sbjct: 1 MWGGRKLSSCGNRLLGVLGPRSRGARAQAARFTARA---EIQFSWTPQTKPWVFSDYRIM 57
Query: 193 WFKSCSMNFAFLNRMKSYRLPWIRPYSTSRSTVDSNEVKTFLALAHRWWDEQGVYAPLHS 372
WFKS M A L+RMK +R PW R YSTS++TVDSNE+KTFLALAHRWWDEQGVYAPLHS
Sbjct: 58 WFKSYRMTLACLSRMKIHRYPWTRLYSTSQTTVDSNEIKTFLALAHRWWDEQGVYAPLHS 117
Query: 373 MNDLRVPFIRDNLLKTVANHQPGKPLSGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDE 552
MNDLRVPFIRDNLLKTVA+HQPGKPLSGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDE
Sbjct: 118 MNDLRVPFIRDNLLKTVAHHQPGKPLSGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDE 177
Query: 553 NIKTAQHHKSFDPVLDKRIEYRACSLEEIVEETAETFDAVVASEVVEHVIDLETFIQCCC 732
NIKTAQHHKSFDPVLDKRIEYRACSLEEIV+ETAETFDAVVASEVVEHVIDLETFIQCCC
Sbjct: 178 NIKTAQHHKSFDPVLDKRIEYRACSLEEIVQETAETFDAVVASEVVEHVIDLETFIQCCC 237
Query: 733 QVLKPGGSLFITTINKTQLSYALGIVFAEQIAGIVPKGTHTWEKFVSPEKLESILESNGL 912
+VLKPGGSLFITTINKTQLSYALGIVFAEQIAGIVPKGTHTWEKF+SPEKLESILESNGL
Sbjct: 238 EVLKPGGSLFITTINKTQLSYALGIVFAEQIAGIVPKGTHTWEKFISPEKLESILESNGL 297
Query: 913 SVQTVTGMLYNPFSGYWHWSENTSLNYAAYAVKSSVQEHSGP-EFALKGEREELRAEAST 1089
SVQTVTGMLYNP SGYWHWSENTSLNYAA+AVKS QEH P EF KGE EELR + ST
Sbjct: 298 SVQTVTGMLYNPLSGYWHWSENTSLNYAAHAVKSKAQEHPVPAEFVFKGETEELRDKDST 357
Query: 1090 NSGVREELKK 1119
N GV+EELKK
Sbjct: 358 NPGVQEELKK 367
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,463,098
Number of extensions: 1087528
Number of successful extensions: 3707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3700
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 318
Effective length of database: 15,340,888
Effective search space: 4878402384
Effective search space used: 4878402384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004301
(1274 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059117.3| hexaprenyldihydroxybenzoate methyltransferase, ... 583 e-166
>ref|NP_059117.3| hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Homo
sapiens].
Length = 369
Score = 583 bits (1502), Expect = e-166
Identities = 294/346 (84%), Positives = 309/346 (89%), Gaps = 1/346 (0%)
Frame = +1
Query: 85 TRADCPRLTTSAVCSKNQLSWTLQIKPWVVNEYRIMWFKSCSMNFAFLNRMKSYRLPWIR 264
T+A P L +SAV KNQLS TLQIKP V NEYR +WFKS F+ LNR+KS+R PW R
Sbjct: 25 TKAARP-LISSAVYVKNQLSGTLQIKPGVFNEYRTIWFKSYRTIFSCLNRIKSFRYPWAR 83
Query: 265 PYSTSRSTVDSNEVKTFLALAHRWWDEQGVYAPLHSMNDLRVPFIRDNLLKTVANHQPGK 444
YSTS++TVDS EVKTFLALAH+WWDEQGVYAPLHSMNDLRVPFIRDNLLKT+ NHQPGK
Sbjct: 84 LYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSMNDLRVPFIRDNLLKTIPNHQPGK 143
Query: 445 PLSGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQHHKSFDPVLDKRIEYRAC 624
PL GMKILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQ HKSFDPVLDKRIEYR C
Sbjct: 144 PLLGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQCHKSFDPVLDKRIEYRVC 203
Query: 625 SLEEIVEETAETFDAVVASEVVEHVIDLETFIQCCCQVLKPGGSLFITTINKTQLSYALG 804
SLEEIVEETAETFDAVVASEVVEHVIDLETF+QCCCQVLKPGGSLFITTINKTQLSYALG
Sbjct: 204 SLEEIVEETAETFDAVVASEVVEHVIDLETFLQCCCQVLKPGGSLFITTINKTQLSYALG 263
Query: 805 IVFAEQIAGIVPKGTHTWEKFVSPEKLESILESNGLSVQTVTGMLYNPFSGYWHWSENTS 984
IVF+EQIA IVPKGTHTWEKFVSPE LESILESNGLSVQTV GMLYNPFSGYWHWSENTS
Sbjct: 264 IVFSEQIASIVPKGTHTWEKFVSPETLESILESNGLSVQTVVGMLYNPFSGYWHWSENTS 323
Query: 985 LNYAAYAVKSSVQEH-SGPEFALKGEREELRAEASTNSGVREELKK 1119
LNYAAYAVKS VQEH + EF LKGE EEL+A A TN V E+LKK
Sbjct: 324 LNYAAYAVKSRVQEHPASAEFVLKGETEELQANACTNPAVHEKLKK 369
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,752,817
Number of extensions: 1079457
Number of successful extensions: 3823
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3820
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 319
Effective length of database: 14,835,944
Effective search space: 4732666136
Effective search space used: 4732666136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004301
(1274 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766275.1| hexaprenyldihydroxybenzoate methyltransferase, ... 519 e-147
>ref|NP_766275.1| hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Mus
musculus].
Length = 370
Score = 519 bits (1337), Expect = e-147
Identities = 263/367 (71%), Positives = 290/367 (79%), Gaps = 1/367 (0%)
Frame = +1
Query: 13 MWRGCKXXXXXXXXXXXXXXVYRGTRADCPRLTTSAVCSKNQLSWTLQIKPWVVNEYRIM 192
MWRG + A PRLT+ + S QL+ LQIKPW + E+ M
Sbjct: 1 MWRGGRLGSRGVRLLETLGFGCPSAVAQPPRLTSRSAYSGTQLTRNLQIKPWELGEHGTM 60
Query: 193 WFKSCSMNFAFLNRMKSYRLPWIRPYSTSRSTVDSNEVKTFLALAHRWWDEQGVYAPLHS 372
F+S M + L+R+K+YR PW R YSTS++TVDS EVK F ALAH WWDE G +APLHS
Sbjct: 61 CFRSYRMALSCLSRVKTYRTPWKRLYSTSQTTVDSREVKNFQALAHTWWDEYGKFAPLHS 120
Query: 373 MNDLRVPFIRDNLLKTVANHQPGKPLSGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDE 552
MNDLRVPFIRDNLLKT A+H PGKPLSGMKILDVGCGGGLLTEPLGRLGASV+GIDPV E
Sbjct: 121 MNDLRVPFIRDNLLKTSASHHPGKPLSGMKILDVGCGGGLLTEPLGRLGASVVGIDPVAE 180
Query: 553 NIKTAQHHKSFDPVLDKRIEYRACSLEEIVEETAETFDAVVASEVVEHVIDLETFIQCCC 732
NIK AQHHKSFDPVLDKRI+Y+ CSLEE V+E+AE FDAVVASEVVEHV LE FIQCC
Sbjct: 181 NIKIAQHHKSFDPVLDKRIQYKVCSLEEAVDESAECFDAVVASEVVEHVSHLEMFIQCCY 240
Query: 733 QVLKPGGSLFITTINKTQLSYALGIVFAEQIAGIVPKGTHTWEKFVSPEKLESILESNGL 912
QVLKPGGSLFITT+NKTQLSYALGIVFAEQIAGIVPKGTHTWEKFVSPEKLESILE NGL
Sbjct: 241 QVLKPGGSLFITTVNKTQLSYALGIVFAEQIAGIVPKGTHTWEKFVSPEKLESILEPNGL 300
Query: 913 SVQTVTGMLYNPFSGYWHWSENTSLNYAAYAVKSSVQEHSGP-EFALKGEREELRAEAST 1089
SV+TV G++YNPFSGYWHWSENTSLNYAA+AV+S QEH P E ALKGE L A S
Sbjct: 301 SVETVAGLVYNPFSGYWHWSENTSLNYAAHAVRSRAQEHQEPAESALKGETGALHANTSG 360
Query: 1090 NSGVREE 1110
+ VREE
Sbjct: 361 SPSVREE 367
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,168,664
Number of extensions: 913073
Number of successful extensions: 2948
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2942
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 320
Effective length of database: 12,493,815
Effective search space: 3998020800
Effective search space used: 3998020800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004301
(1274 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360592.1| PREDICTED: LOW QUALITY PROTEIN: hexaprenyldi... 663 0.0
Alignment gi|XP_003353316.1| PREDICTED: hexaprenyldihydroxybenzoate methy... 444 e-125
>ref|XP_003360592.1| PREDICTED: LOW QUALITY PROTEIN: hexaprenyldihydroxybenzoate
methyltransferase, mitochondrial [Sus scrofa].
Length = 342
Score = 663 bits (1710), Expect = 0.0
Identities = 329/337 (97%), Positives = 329/337 (97%), Gaps = 5/337 (1%)
Frame = +1
Query: 124 CSKNQLSWTLQIKPWVVNEYRIMWFKSCSMNFAFLNRMKSYRLPWIRPYSTSRSTVDSNE 303
CSKNQLSWTLQIKPWVVNEYRIMWFKSCSMNFAFLNRMKSYRLPWIRPYSTSRSTVDSNE
Sbjct: 6 CSKNQLSWTLQIKPWVVNEYRIMWFKSCSMNFAFLNRMKSYRLPWIRPYSTSRSTVDSNE 65
Query: 304 VKTFLALAHRWWDEQGVYAPLHSMNDLRVPFIRDNLLKTVANHQPGKPLSGMKILDVGCG 483
VKTFLALAHRWWDEQGVYAPLHSMNDLRVPFIRDNLLKTVANHQPGKPLSGMKILDVGCG
Sbjct: 66 VKTFLALAHRWWDEQGVYAPLHSMNDLRVPFIRDNLLKTVANHQPGKPLSGMKILDVGCG 125
Query: 484 GG---LLTEPLGRLGASVIGIDP--VDENIKTAQHHKSFDPVLDKRIEYRACSLEEIVEE 648
GG L PLGRLGASVIGIDP VDENIKTAQHHKSFDPVLDKRIEYRACSLEEIVEE
Sbjct: 126 GGNSFLCHXPLGRLGASVIGIDPDPVDENIKTAQHHKSFDPVLDKRIEYRACSLEEIVEE 185
Query: 649 TAETFDAVVASEVVEHVIDLETFIQCCCQVLKPGGSLFITTINKTQLSYALGIVFAEQIA 828
TAETFDAVVASEVVEHVIDLETFIQCCCQVLKPGGSLFITTINKTQLSYALGIVFAEQIA
Sbjct: 186 TAETFDAVVASEVVEHVIDLETFIQCCCQVLKPGGSLFITTINKTQLSYALGIVFAEQIA 245
Query: 829 GIVPKGTHTWEKFVSPEKLESILESNGLSVQTVTGMLYNPFSGYWHWSENTSLNYAAYAV 1008
GIVPKGTHTWEKFVSPEKLESILESNGLSVQTVTGMLYNPFSGYWHWSENTSLNYAAYAV
Sbjct: 246 GIVPKGTHTWEKFVSPEKLESILESNGLSVQTVTGMLYNPFSGYWHWSENTSLNYAAYAV 305
Query: 1009 KSSVQEHSGPEFALKGEREELRAEASTNSGVREELKK 1119
KSSVQEHSGPEFALKGEREELRAEASTNSGVREELKK
Sbjct: 306 KSSVQEHSGPEFALKGEREELRAEASTNSGVREELKK 342
>ref|XP_003353316.1| PREDICTED: hexaprenyldihydroxybenzoate methyltransferase,
mitochondrial-like [Sus scrofa].
Length = 221
Score = 444 bits (1143), Expect = e-125
Identities = 221/221 (100%), Positives = 221/221 (100%)
Frame = +1
Query: 457 MKILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQHHKSFDPVLDKRIEYRACSLEE 636
MKILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQHHKSFDPVLDKRIEYRACSLEE
Sbjct: 1 MKILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQHHKSFDPVLDKRIEYRACSLEE 60
Query: 637 IVEETAETFDAVVASEVVEHVIDLETFIQCCCQVLKPGGSLFITTINKTQLSYALGIVFA 816
IVEETAETFDAVVASEVVEHVIDLETFIQCCCQVLKPGGSLFITTINKTQLSYALGIVFA
Sbjct: 61 IVEETAETFDAVVASEVVEHVIDLETFIQCCCQVLKPGGSLFITTINKTQLSYALGIVFA 120
Query: 817 EQIAGIVPKGTHTWEKFVSPEKLESILESNGLSVQTVTGMLYNPFSGYWHWSENTSLNYA 996
EQIAGIVPKGTHTWEKFVSPEKLESILESNGLSVQTVTGMLYNPFSGYWHWSENTSLNYA
Sbjct: 121 EQIAGIVPKGTHTWEKFVSPEKLESILESNGLSVQTVTGMLYNPFSGYWHWSENTSLNYA 180
Query: 997 AYAVKSSVQEHSGPEFALKGEREELRAEASTNSGVREELKK 1119
AYAVKSSVQEHSGPEFALKGEREELRAEASTNSGVREELKK
Sbjct: 181 AYAVKSSVQEHSGPEFALKGEREELRAEASTNSGVREELKK 221
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,999,475
Number of extensions: 674524
Number of successful extensions: 2270
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2266
Number of HSP's successfully gapped: 2
Length of query: 424
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 322
Effective length of database: 8,804,438
Effective search space: 2835029036
Effective search space used: 2835029036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004301
(1274 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118404.1| Sus scrofa unplaced genomic scaffold ChrUScaf142 607 e-171
Sscrofa_Chr01 607 e-171
>gb|JH118404.1| Sus scrofa unplaced genomic scaffold ChrUScaf142
Length = 120543
Score = 607 bits (306), Expect = e-171
Identities = 306/306 (100%)
Strand = Plus / Minus
Query: 905 atggtctttcagttcaaacggtgacaggaatgctctacaaccccttctcaggttactggc 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88042 atggtctttcagttcaaacggtgacaggaatgctctacaaccccttctcaggttactggc 87983
Query: 965 actggagtgaaaacaccagccttaactatgcagcttatgctgtgaaatccagcgtccagg 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87982 actggagtgaaaacaccagccttaactatgcagcttatgctgtgaaatccagcgtccagg 87923
Query: 1025 aacactcagggcctgagtttgctttaaagggagaaagagaagagcttcgagctgaagcct 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87922 aacactcagggcctgagtttgctttaaagggagaaagagaagagcttcgagctgaagcct 87863
Query: 1085 ccaccaattcaggtgtgcgtgaagagttgaagaaataaattgtttctaaggactgtagta 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87862 ccaccaattcaggtgtgcgtgaagagttgaagaaataaattgtttctaaggactgtagta 87803
Query: 1145 aaacggcttgaaagtctcatgtttacagtaacacaaaatatactgtttgtcttttgagac 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87802 aaacggcttgaaagtctcatgtttacagtaacacaaaatatactgtttgtcttttgagac 87743
Query: 1205 aagatc 1210
||||||
Sbjct: 87742 aagatc 87737
Score = 444 bits (224), Expect = e-122
Identities = 243/250 (97%), Gaps = 7/250 (2%)
Strand = Plus / Minus
Query: 502 cctctagggcggcttggggcatcagttattggaattgatcct-------gtggatgagaa 554
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 94023 cctctagggcggcttggggcatcagttattggaattgatcctngatcctgtggatgagaa 93964
Query: 555 cattaaaacagcacagcaccataaatcatttgacccagtcctggataagaggatagagta 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93963 cattaaaacagcacagcaccataaatcatttgacccagtcctggataagaggatagagta 93904
Query: 615 cagagcatgctccctggaagagattgtggaagaaactgcagaaacatttgatgctgttgt 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93903 cagagcatgctccctggaagagattgtggaagaaactgcagaaacatttgatgctgttgt 93844
Query: 675 agcttctgaagttgtagaacatgtgattgatctagaaacatttatacagtgctgctgtca 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93843 agcttctgaagttgtagaacatgtgattgatctagaaacatttatacagtgctgctgtca 93784
Query: 735 agtgctaaaa 744
||||||||||
Sbjct: 93783 agtgctaaaa 93774
Score = 317 bits (160), Expect = 8e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 745 cctggtggttctttattcattactacaatcaacaaaacccagctatcttatgccttggga 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90753 cctggtggttctttattcattactacaatcaacaaaacccagctatcttatgccttggga 90694
Query: 805 attgtttttgcagagcaaattgcaggtattgtaccaaaaggtactcatacatgggaaaag 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90693 attgtttttgcagagcaaattgcaggtattgtaccaaaaggtactcatacatgggaaaag 90634
Query: 865 tttgtttcacctgaaaagctagagagcattctggaatcaa 904
||||||||||||||||||||||||||||||||||||||||
Sbjct: 90633 tttgtttcacctgaaaagctagagagcattctggaatcaa 90594
Score = 307 bits (155), Expect = 8e-81
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 247 aggctcccttggataagaccatacagtacttcccggtccactgtagacagcaatgaggtg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101916 aggctcccttggataagaccatacagtacttcccggtccactgtagacagcaatgaggtg 101857
Query: 307 aagaccttcctggccttggctcacaggtggtgggatgagcaaggagtgtatgcacctctt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101856 aagaccttcctggccttggctcacaggtggtgggatgagcaaggagtgtatgcacctctt 101797
Query: 367 cattctatgaacgacctgagggtgccgtttattag 401
|||||||||||||||||||||||||||||||||||
Sbjct: 101796 cattctatgaacgacctgagggtgccgtttattag 101762
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 121 gtttgttcaaagaatcagctcagttggactctacaaattaaaccatgggttgtcaatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104411 gtttgttcaaagaatcagctcagttggactctacaaattaaaccatgggttgtcaatgaa 104352
Query: 181 tacagaatcatgtggttcaaatcctgtagcatgaattttgccttcttgaatagaatgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104351 tacagaatcatgtggttcaaatcctgtagcatgaattttgccttcttgaatagaatgaaa 104292
Query: 241 agttacagg 249
|||||||||
Sbjct: 104291 agttacagg 104283
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 400 agagacaatcttttaaaaacagttgctaatcaccagcctggaaaacctttgtctgggatg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97932 agagacaatcttttaaaaacagttgctaatcaccagcctggaaaacctttgtctgggatg 97873
Query: 460 aagattcttgatgttggctgtggtgg 485
||||||||||||||||||||||||||
Sbjct: 97872 aagattcttgatgttggctgtggtgg 97847
Score = 89.7 bits (45), Expect = 4e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 1 ctttttgtcgcgatgtggcgaggctgtaagctgagctcctccggg 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109359 ctttttgtcgcgatgtggcgaggctgtaagctgagctcctccggg 109315
>Sscrofa_Chr01
|| Length = 315321322
Score = 607 bits (306), Expect = e-171
Identities = 306/306 (100%)
Strand = Plus / Plus
Query: 905 atggtctttcagttcaaacggtgacaggaatgctctacaaccccttctcaggttactggc 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74975240 atggtctttcagttcaaacggtgacaggaatgctctacaaccccttctcaggttactggc 74975299
Query: 965 actggagtgaaaacaccagccttaactatgcagcttatgctgtgaaatccagcgtccagg 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74975300 actggagtgaaaacaccagccttaactatgcagcttatgctgtgaaatccagcgtccagg 74975359
Query: 1025 aacactcagggcctgagtttgctttaaagggagaaagagaagagcttcgagctgaagcct 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74975360 aacactcagggcctgagtttgctttaaagggagaaagagaagagcttcgagctgaagcct 74975419
Query: 1085 ccaccaattcaggtgtgcgtgaagagttgaagaaataaattgtttctaaggactgtagta 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74975420 ccaccaattcaggtgtgcgtgaagagttgaagaaataaattgtttctaaggactgtagta 74975479
Query: 1145 aaacggcttgaaagtctcatgtttacagtaacacaaaatatactgtttgtcttttgagac 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74975480 aaacggcttgaaagtctcatgtttacagtaacacaaaatatactgtttgtcttttgagac 74975539
Query: 1205 aagatc 1210
||||||
Sbjct: 74975540 aagatc 74975545
Score = 482 bits (243), Expect = e-133
Identities = 243/243 (100%)
Strand = Plus / Plus
Query: 502 cctctagggcggcttggggcatcagttattggaattgatcctgtggatgagaacattaaa 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74969433 cctctagggcggcttggggcatcagttattggaattgatcctgtggatgagaacattaaa 74969492
Query: 562 acagcacagcaccataaatcatttgacccagtcctggataagaggatagagtacagagca 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74969493 acagcacagcaccataaatcatttgacccagtcctggataagaggatagagtacagagca 74969552
Query: 622 tgctccctggaagagattgtggaagaaactgcagaaacatttgatgctgttgtagcttct 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74969553 tgctccctggaagagattgtggaagaaactgcagaaacatttgatgctgttgtagcttct 74969612
Query: 682 gaagttgtagaacatgtgattgatctagaaacatttatacagtgctgctgtcaagtgcta 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74969613 gaagttgtagaacatgtgattgatctagaaacatttatacagtgctgctgtcaagtgcta 74969672
Query: 742 aaa 744
|||
Sbjct: 74969673 aaa 74969675
Score = 317 bits (160), Expect = 8e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 745 cctggtggttctttattcattactacaatcaacaaaacccagctatcttatgccttggga 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74972651 cctggtggttctttattcattactacaatcaacaaaacccagctatcttatgccttggga 74972710
Query: 805 attgtttttgcagagcaaattgcaggtattgtaccaaaaggtactcatacatgggaaaag 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74972711 attgtttttgcagagcaaattgcaggtattgtaccaaaaggtactcatacatgggaaaag 74972770
Query: 865 tttgtttcacctgaaaagctagagagcattctggaatcaa 904
||||||||||||||||||||||||||||||||||||||||
Sbjct: 74972771 tttgtttcacctgaaaagctagagagcattctggaatcaa 74972810
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 456 gatgaagattcttgatgttggctgtggtggtggattgttaacagaa 501
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74964869 gatgaagattcttgatgttggctgtggtggtggattgttaacagaa 74964914
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,963,464
Number of extensions: 286
Number of successful extensions: 286
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 12
Length of query: 1274
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1253
Effective length of database: 2,808,413,156
Effective search space: 3518941684468
Effective search space used: 3518941684468
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)