Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004309
(916 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094583.1| glutathione peroxidase 7 precursor [Bos taur... 341 6e-94
Alignment gi|NP_001039553.1| probable glutathione peroxidase 8 [Bos tauru... 206 3e-53
Alignment gi|NP_777195.1| phospholipid hydroperoxide glutathione peroxida... 116 2e-26
Alignment gi|NP_001020506.2| epididymal secretory glutathione peroxidase ... 89 7e-18
Alignment gi|NP_776501.1| glutathione peroxidase 1 [Bos taurus]. 87 2e-17
Alignment gi|NP_001156611.1| glutathione peroxidase 2 [Bos taurus]. 86 6e-17
Alignment gi|NP_776502.1| glutathione peroxidase 3 precursor [Bos taurus]. 80 2e-15
Alignment gi|NP_001156614.1| glutathione peroxidase 6 [Bos taurus]. 76 5e-14
>ref|NP_001094583.1| glutathione peroxidase 7 precursor [Bos taurus].
Length = 186
Score = 341 bits (874), Expect = 6e-94
Identities = 164/166 (98%), Positives = 166/166 (100%)
Frame = +1
Query: 103 REQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFN 282
REQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFN
Sbjct: 20 REQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFN 79
Query: 283 VLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEP 462
VLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLT+TSGKEP
Sbjct: 80 VLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTETSGKEP 139
Query: 463 TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKRED 600
TWNFWKYLVAPDGKV+GAWDPTVSVEEIRPQITALVRKLILKKRED
Sbjct: 140 TWNFWKYLVAPDGKVIGAWDPTVSVEEIRPQITALVRKLILKKRED 185
>ref|NP_001039553.1| probable glutathione peroxidase 8 [Bos taurus].
Length = 209
Score = 206 bits (523), Expect = 3e-53
Identities = 91/162 (56%), Positives = 125/162 (77%)
Frame = +1
Query: 115 FYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
FY F+ + G++VSLEK++G V+LVVNVAS+C TD++Y ALQ+L ++ GP HF+VLAF
Sbjct: 47 FYTFEVKDANGRVVSLEKFKGKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAF 106
Query: 295 PCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEPTWNF 474
PCNQFG+ EP +KE+ SFAR + V+FP+F KI + G+ A PAF++L +S KEP WNF
Sbjct: 107 PCNQFGESEPRPSKEVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFLVDSSKKEPRWNF 166
Query: 475 WKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKRED 600
WKYLV P+G+VV W P +E IRP+I AL+R++I+KK+ED
Sbjct: 167 WKYLVNPEGQVVKTWRPEEPIEVIRPEIAALIRQMIIKKKED 208
>ref|NP_777195.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
precursor [Bos taurus].
Length = 197
Score = 116 bits (291), Expect = 2e-26
Identities = 63/145 (43%), Positives = 86/145 (59%), Gaps = 6/145 (4%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ ++F A +I G++V+L+KYRG V +V NVAS+ G TD +Y L L +L
Sbjct: 39 RSMHEFSAKDIDGRMVNLDKYRGHVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRIL 98
Query: 289 AFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTS------ 450
AFPCNQFG+QEP SN EI+ FA Y+V F +FSKI V G AHP +K++
Sbjct: 99 AFPCNQFGRQEPGSNAEIKEFA-AGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGML 157
Query: 451 GKEPTWNFWKYLVAPDGKVVGAWDP 525
G WNF K+L+ +G VV + P
Sbjct: 158 GNAIKWNFTKFLIDKNGCVVKRYGP 182
>ref|NP_001020506.2| epididymal secretory glutathione peroxidase [Bos taurus].
Length = 219
Score = 88.6 bits (218), Expect = 7e-18
Identities = 61/182 (33%), Positives = 82/182 (45%), Gaps = 25/182 (13%)
Frame = +1
Query: 118 YDFKAVNIRGKL-VSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
YD+ A + GK + ++Y G L VNVA+ CG T Q Y L LQ +L P VL F
Sbjct: 39 YDYDAFTLNGKEHIQFKQYAGKHVLFVNVATYCGLTAQ-YPELNALQEELKPFGLVVLGF 97
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTSG-- 453
PCNQFG+QEP N EI + Y +F +F K V G F +L Q+
Sbjct: 98 PCNQFGKQEPGENSEILPGLKYVRPGGGYVPNFQLFEKGDVNGETEQKVFTFLKQSCPHP 157
Query: 454 -----------------KEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLI 582
++ WNF K+LV PDG V W V ++ I A +++
Sbjct: 158 SEIMGSIKHISWEPIMVRDIRWNFEKFLVGPDGIPVMRWFHRTPVSTVKTDILAYMKQFK 217
Query: 583 LK 588
K
Sbjct: 218 TK 219
>ref|NP_776501.1| glutathione peroxidase 1 [Bos taurus].
Length = 205
Score = 87.4 bits (215), Expect = 2e-17
Identities = 57/170 (33%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Frame = +1
Query: 145 GKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEP 324
G+ +L RG V L+ NVAS G T + Y + LQR LGP VL FPCNQFG QE
Sbjct: 30 GEPFNLSSLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQEN 89
Query: 325 DSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQ--------------- 444
N+EI + + + +F +F K V G AHP F +L +
Sbjct: 90 AKNEEILNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTD 149
Query: 445 --------TSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALV 570
+ +WNF K+LV PDG V + +I P I L+
Sbjct: 150 PKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDIETLL 199
>ref|NP_001156611.1| glutathione peroxidase 2 [Bos taurus].
Length = 190
Score = 85.5 bits (210), Expect = 6e-17
Identities = 55/186 (29%), Positives = 81/186 (43%), Gaps = 28/186 (15%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ FYD A+++ G+ V +RG L+ NVAS G T + + L +LQ P VL
Sbjct: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVL 64
Query: 289 AFPCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYL----- 438
FPCNQFG QE N+EI + + + +F + K V G HP F YL
Sbjct: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGFQPTFTLVQKCDVNGQNEHPVFAYLKDKLP 124
Query: 439 ------------------TQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITA 564
+ + +WNF K+L+ P+G+ + T I P I
Sbjct: 125 YPYDDPFSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFQTINIEPDIKR 184
Query: 565 LVRKLI 582
L++ I
Sbjct: 185 LLKVAI 190
>ref|NP_776502.1| glutathione peroxidase 3 precursor [Bos taurus].
Length = 226
Score = 80.5 bits (197), Expect = 2e-15
Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 25/178 (14%)
Frame = +1
Query: 118 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y++ A+ I G+ + ++Y G L VNVAS G T Q Y L LQ +L P +L F
Sbjct: 41 YEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLTGQ-YVELNALQEELEPFGLVILGF 99
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTSGK- 456
PCNQFG+QEP N EI + + ++ +F +F K V G + +L +
Sbjct: 100 PCNQFGKQEPGENSEILATLKYVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFLKNSCPPT 159
Query: 457 ------------EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 576
EP WNF K+LV PDG + W +V ++ I +R+
Sbjct: 160 SELLGSPDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVNSVKMDILTYMRR 217
>ref|NP_001156614.1| glutathione peroxidase 6 [Bos taurus].
Length = 221
Score = 75.9 bits (185), Expect = 5e-14
Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Frame = +1
Query: 118 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y++ A+ + G+ + ++Y G L VNVA+ G T Q Y L LQ +L P VL F
Sbjct: 41 YEYGALTLNGEEYIQFKQYVGKHVLFVNVATYUGLTAQ-YPELNALQEELKPFGVVVLGF 99
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTSGK- 456
PCNQFG+QEP N EI + + +F +F K V G F +L
Sbjct: 100 PCNQFGKQEPAKNSEILMGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLKNACPPT 159
Query: 457 ------------EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 576
EP WNF K+LV PDG V W SV ++ + +++
Sbjct: 160 SDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRASVSTVKSDMLEYLKQ 217
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,325,836
Number of extensions: 766636
Number of successful extensions: 2638
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2621
Number of HSP's successfully gapped: 8
Length of query: 305
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,306,398
Effective search space: 2904198794
Effective search space used: 2904198794
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004309
(916 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532572.2| PREDICTED: similar to glutathione peroxidase 7 ... 272 4e-73
Alignment gi|XP_535237.1| PREDICTED: similar to F26E4.12 isoform 1 [Canis... 204 7e-53
Alignment gi|XP_848225.1| PREDICTED: similar to F26E4.12 [Canis familiari... 195 4e-50
Alignment gi|XP_859275.1| PREDICTED: similar to F26E4.12 isoform 2 [Canis... 182 3e-46
Alignment gi|NP_001108591.1| glutathione peroxidase 1 [Canis lupus famili... 92 7e-19
Alignment gi|NP_001108607.1| glutathione peroxidase 2 [Canis lupus famili... 85 8e-17
Alignment gi|NP_001157926.1| glutathione peroxidase 3 [Canis lupus famili... 82 9e-16
Alignment gi|NP_001003213.1| epididymal secretory glutathione peroxidase ... 81 2e-15
Alignment gi|XP_545450.2| PREDICTED: similar to glutathione peroxidase 6 ... 65 9e-11
Alignment gi|XP_855017.1| PREDICTED: similar to Plasma glutathione peroxi... 60 2e-09
>ref|XP_532572.2| PREDICTED: similar to glutathione peroxidase 7 [Canis familiaris].
Length = 222
Score = 272 bits (695), Expect = 4e-73
Identities = 129/140 (92%), Positives = 134/140 (95%)
Frame = +1
Query: 181 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR 360
VSLVVNVAS CGFTD HYR+LQQLQRDLGP HF VLAFPCNQFGQQEPD ++EIESFARR
Sbjct: 82 VSLVVNVASACGFTDGHYRSLQQLQRDLGPRHFTVLAFPCNQFGQQEPDGDREIESFARR 141
Query: 361 TYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVE 540
TY VSFPMFSK+AVTGTGAHPAFKYLTQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVE
Sbjct: 142 TYGVSFPMFSKVAVTGTGAHPAFKYLTQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVE 201
Query: 541 EIRPQITALVRKLILKKRED 600
+IRPQITALVRKLILKKRED
Sbjct: 202 DIRPQITALVRKLILKKRED 221
>ref|XP_535237.1| PREDICTED: similar to F26E4.12 isoform 1 [Canis familiaris].
Length = 209
Score = 204 bits (520), Expect = 7e-53
Identities = 91/162 (56%), Positives = 125/162 (77%)
Frame = +1
Query: 115 FYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
FY F+ + +G+ VSLEK++G V+LVVNVAS+C TD++Y ALQ+L ++ GP HF+VLAF
Sbjct: 47 FYTFEVKDAKGRTVSLEKFKGKVTLVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAF 106
Query: 295 PCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEPTWNF 474
PCNQFG+ EP +KE+ SFAR Y +FP+F KI + G+ A PAF++L +S KEP WNF
Sbjct: 107 PCNQFGESEPRPSKEVVSFARNNYGATFPIFHKIKILGSEADPAFRFLVDSSKKEPRWNF 166
Query: 475 WKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKRED 600
WKYLV P+G+VV +W P +E IRP+I ALVR++IL+K++D
Sbjct: 167 WKYLVNPEGQVVKSWRPEEPIEVIRPEIAALVRQMILRKKDD 208
>ref|XP_848225.1| PREDICTED: similar to F26E4.12 [Canis familiaris].
Length = 209
Score = 195 bits (496), Expect = 4e-50
Identities = 87/162 (53%), Positives = 122/162 (75%)
Frame = +1
Query: 115 FYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
FY F+ + +G+ VSLEK++G V+LVVNVAS+C D++Y A+Q+L ++ GP HF+VLAF
Sbjct: 47 FYTFEVKDAKGRTVSLEKFKGKVTLVVNVASDCQLRDRNYLAVQELHKEFGPFHFSVLAF 106
Query: 295 PCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEPTWNF 474
PCNQFG+ EP +KE+ SFAR Y +FP+F KI + G+ A PAF++L +S KEP WNF
Sbjct: 107 PCNQFGESEPFPSKEVVSFARNNYGATFPIFHKIKILGSEADPAFRFLVDSSKKEPRWNF 166
Query: 475 WKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKRED 600
WKYLV P+ +VV +W P +E IRP+I ALV ++IL+K++D
Sbjct: 167 WKYLVNPEEQVVKSWRPEEPIEVIRPEIAALVTQMILRKKDD 208
>ref|XP_859275.1| PREDICTED: similar to F26E4.12 isoform 2 [Canis familiaris].
Length = 158
Score = 182 bits (463), Expect = 3e-46
Identities = 81/143 (56%), Positives = 110/143 (76%)
Frame = +1
Query: 172 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESF 351
+ V+LVVNVAS+C TD++Y ALQ+L ++ GP HF+VLAFPCNQFG+ EP +KE+ SF
Sbjct: 15 KAKVTLVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSF 74
Query: 352 ARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEPTWNFWKYLVAPDGKVVGAWDPTV 531
AR Y +FP+F KI + G+ A PAF++L +S KEP WNFWKYLV P+G+VV +W P
Sbjct: 75 ARNNYGATFPIFHKIKILGSEADPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKSWRPEE 134
Query: 532 SVEEIRPQITALVRKLILKKRED 600
+E IRP+I ALVR++IL+K++D
Sbjct: 135 PIEVIRPEIAALVRQMILRKKDD 157
>ref|NP_001108591.1| glutathione peroxidase 1 [Canis lupus familiaris].
Length = 205
Score = 92.0 bits (227), Expect = 7e-19
Identities = 59/170 (34%), Positives = 79/170 (46%), Gaps = 28/170 (16%)
Frame = +1
Query: 145 GKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEP 324
G+ +SL RG V L+ NVAS G T + Y + +LQR LGP VL FPCNQFG QE
Sbjct: 29 GEPMSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 88
Query: 325 DSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQT-------------- 447
N+EI + + + +F +F K V G AHP F +L ++
Sbjct: 89 AKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLRESLPAPSDDTTALMTD 148
Query: 448 ---------SGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALV 570
+ WNF K+LV PDG V + +I P I AL+
Sbjct: 149 PKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFPTIDIEPDIEALL 198
>ref|NP_001108607.1| glutathione peroxidase 2 [Canis lupus familiaris].
Length = 190
Score = 85.1 bits (209), Expect = 8e-17
Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ FYD A+++ G+ V +RG L+ NVAS G T + + L +LQ P VL
Sbjct: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVL 64
Query: 289 AFPCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYL----- 438
FPCNQFG QE N+EI + + + +F + K V G HP F YL
Sbjct: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124
Query: 439 ------------------TQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITA 564
+ + WNF K+L+ P+G+ + T I P I
Sbjct: 125 YPYDDPLSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 184
Query: 565 LVRKLI 582
L++ I
Sbjct: 185 LLKVAI 190
>ref|NP_001157926.1| glutathione peroxidase 3 [Canis lupus familiaris].
Length = 226
Score = 81.6 bits (200), Expect = 9e-16
Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Frame = +1
Query: 118 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y++ A+ I G+ + ++Y G L VNVAS G T Q Y L LQ +L P +L F
Sbjct: 41 YEYGALTINGEEYIPFKQYAGKYILFVNVASYUGLTGQ-YLELNALQEELAPFGLVILGF 99
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTSGK- 456
PCNQFG+QEP N EI + + +F +F K V G + +L +
Sbjct: 100 PCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPT 159
Query: 457 ------------EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 576
EP WNF K+LV PDG + W +V ++ I A +R+
Sbjct: 160 SELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVSTVKMDILAYMRR 217
>ref|NP_001003213.1| epididymal secretory glutathione peroxidase precursor [Canis lupus
familiaris].
Length = 221
Score = 80.9 bits (198), Expect = 2e-15
Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Frame = +1
Query: 118 YDFKAVNIRG-KLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y+++A+ + G + + ++Y L VNVA+ CG T Q Y L LQ +L P VL F
Sbjct: 41 YEYEALTLNGNERIQFKQYPRKHVLFVNVATYCGLTAQ-YPELNSLQEELKPLGLVVLGF 99
Query: 295 PCNQFGQQEPDSNKEIESFAR-----RTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKE 459
PCNQFG+Q P N EI + R Y +F +F K V G F +L + S
Sbjct: 100 PCNQFGKQGPGENSEILPGLKYVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFL-KLSCPH 158
Query: 460 PT--------------------WNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKL 579
P+ WNF K+LV PDG V W + ++ I +++L
Sbjct: 159 PSEVLGSFRHISWDPVKVHDIRWNFEKFLVGPDGVPVLRWFHRTPISTVKEDILVYLKQL 218
Query: 580 ILK 588
+K
Sbjct: 219 KMK 221
>ref|XP_545450.2| PREDICTED: similar to glutathione peroxidase 6 [Canis familiaris].
Length = 154
Score = 65.1 bits (157), Expect = 9e-11
Identities = 47/149 (31%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Frame = +1
Query: 208 ECGFTDQHY-RALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRT-----YS 369
+C + H R L LQ +L VL FPCNQFG+QEP N EI S + +
Sbjct: 3 QCSYIGNHCTRELNALQEELKSFGVVVLGFPCNQFGKQEPGKNSEILSGLKHVRPGGGFV 62
Query: 370 VSFPMFSKIAVTGTGAHPAFKYLTQTSGK-------------EP------TWNFWKYLVA 492
+F +F K V G F +L + EP WNF K+LV
Sbjct: 63 PNFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVG 122
Query: 493 PDGKVVGAWDPTVSVEEIRPQITALVRKL 579
PDG V W V ++ I A +++L
Sbjct: 123 PDGVPVMRWFHQAPVSTVKADILAYLKQL 151
>ref|XP_855017.1| PREDICTED: similar to Plasma glutathione peroxidase precursor
(GSHPx-P) [Canis familiaris].
Length = 147
Score = 60.5 bits (145), Expect = 2e-09
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 24/136 (17%)
Frame = +1
Query: 241 LQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVT 405
L LQ +L P +L FPCNQFG+QEP N EI + + +F +F K V
Sbjct: 3 LNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVN 62
Query: 406 GTGAHPAFKYLTQTSGK-------------EP------TWNFWKYLVAPDGKVVGAWDPT 528
G + +L + EP WNF K+LV PDG + W
Sbjct: 63 GEKEQKFYTFLKNSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHR 122
Query: 529 VSVEEIRPQITALVRK 576
+V ++ I A +R+
Sbjct: 123 TTVSTVKMDILAYMRR 138
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,710,599
Number of extensions: 791236
Number of successful extensions: 2801
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2789
Number of HSP's successfully gapped: 10
Length of query: 305
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 203
Effective length of database: 15,474,232
Effective search space: 3141269096
Effective search space used: 3141269096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004309
(916 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056511.2| glutathione peroxidase 7 precursor [Homo sapien... 338 5e-93
Alignment gi|NP_001008398.2| probable glutathione peroxidase 8 [Homo sapi... 207 1e-53
Alignment gi|NP_001034937.1| phospholipid hydroperoxide glutathione perox... 116 3e-26
Alignment gi|NP_002076.2| phospholipid hydroperoxide glutathione peroxida... 116 3e-26
Alignment gi|NP_001034936.1| phospholipid hydroperoxide glutathione perox... 108 9e-24
Alignment gi|NP_000572.2| glutathione peroxidase 1 isoform 1 [Homo sapien... 96 5e-20
Alignment gi|NP_001500.1| epididymal secretory glutathione peroxidase iso... 91 1e-18
Alignment gi|NP_002074.2| glutathione peroxidase 2 [Homo sapiens]. 87 3e-17
Alignment gi|NP_002075.2| glutathione peroxidase 3 precursor [Homo sapien... 81 1e-15
Alignment gi|NP_874360.1| glutathione peroxidase 6 precursor [Homo sapien... 72 7e-13
>ref|NP_056511.2| glutathione peroxidase 7 precursor [Homo sapiens].
Length = 187
Score = 338 bits (866), Expect = 5e-93
Identities = 163/167 (97%), Positives = 165/167 (98%)
Frame = +1
Query: 100 QREQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHF 279
Q+EQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHF
Sbjct: 20 QQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHF 79
Query: 280 NVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKE 459
NVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL QTSGKE
Sbjct: 80 NVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKE 139
Query: 460 PTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKRED 600
PTWNFWKYLVAPDGKVVGAWDPTVSVEE+RPQITALVRKLIL KRED
Sbjct: 140 PTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKRED 186
>ref|NP_001008398.2| probable glutathione peroxidase 8 [Homo sapiens].
Length = 209
Score = 207 bits (527), Expect = 1e-53
Identities = 93/162 (57%), Positives = 124/162 (76%)
Frame = +1
Query: 115 FYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
FY F+ + +G+ VSLEKY+G VSLVVNVAS+C TD++Y L++L ++ GP HF+VLAF
Sbjct: 47 FYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAF 106
Query: 295 PCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEPTWNF 474
PCNQFG+ EP +KE+ESFAR+ Y V+FP+F KI + G+ PAF++L +S KEP WNF
Sbjct: 107 PCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNF 166
Query: 475 WKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKRED 600
WKYLV P+G+VV W P +E IRP I ALVR++I+KK+ED
Sbjct: 167 WKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKKED 208
>ref|NP_001034937.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
isoform C precursor [Homo sapiens].
Length = 234
Score = 116 bits (290), Expect = 3e-26
Identities = 65/145 (44%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ ++F A +I G +V+L+KYRG V +V NVAS+ G T+ +Y L L +L
Sbjct: 76 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 135
Query: 289 AFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL-TQTSGK--- 456
AFPCNQFG+QEP SN+EI+ FA Y+V F MFSKI V G AHP +K++ Q GK
Sbjct: 136 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 194
Query: 457 --EPTWNFWKYLVAPDGKVVGAWDP 525
WNF K+L+ +G VV + P
Sbjct: 195 GNAIKWNFTKFLIDKNGCVVKRYGP 219
>ref|NP_002076.2| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
isoform A precursor [Homo sapiens].
Length = 197
Score = 116 bits (290), Expect = 3e-26
Identities = 65/145 (44%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ ++F A +I G +V+L+KYRG V +V NVAS+ G T+ +Y L L +L
Sbjct: 39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 98
Query: 289 AFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL-TQTSGK--- 456
AFPCNQFG+QEP SN+EI+ FA Y+V F MFSKI V G AHP +K++ Q GK
Sbjct: 99 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 157
Query: 457 --EPTWNFWKYLVAPDGKVVGAWDP 525
WNF K+L+ +G VV + P
Sbjct: 158 GNAIKWNFTKFLIDKNGCVVKRYGP 182
>ref|NP_001034936.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
isoform B precursor [Homo sapiens].
Length = 227
Score = 108 bits (269), Expect = 9e-24
Identities = 60/131 (45%), Positives = 80/131 (61%), Gaps = 6/131 (4%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ ++F A +I G +V+L+KYRG V +V NVAS+ G T+ +Y L L +L
Sbjct: 39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 98
Query: 289 AFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL-TQTSGK--- 456
AFPCNQFG+QEP SN+EI+ FA Y+V F MFSKI V G AHP +K++ Q GK
Sbjct: 99 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 157
Query: 457 --EPTWNFWKY 483
WNF K+
Sbjct: 158 GNAIKWNFTKF 168
>ref|NP_000572.2| glutathione peroxidase 1 isoform 1 [Homo sapiens].
Length = 203
Score = 95.9 bits (237), Expect = 5e-20
Identities = 64/183 (34%), Positives = 84/183 (45%), Gaps = 29/183 (15%)
Frame = +1
Query: 109 QDFYDFKAVNIRG-KLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNV 285
Q Y F A + G + VSL RG V L+ NVAS G T + Y + +LQR LGP V
Sbjct: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVV 73
Query: 286 LAFPCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQ-- 444
L FPCNQFG QE N+EI + + + +F +F K V G GAHP F +L +
Sbjct: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133
Query: 445 ---------------------TSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQIT 561
+ WNF K+LV PDG + + +I P I
Sbjct: 134 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 193
Query: 562 ALV 570
AL+
Sbjct: 194 ALL 196
>ref|NP_001500.1| epididymal secretory glutathione peroxidase isoform 1 precursor
[Homo sapiens].
Length = 221
Score = 91.3 bits (225), Expect = 1e-18
Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Frame = +1
Query: 118 YDFKAVNI-RGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
YD++A+ + + + VS ++Y G L VNVA+ CG T Q Y L LQ +L P+ VL F
Sbjct: 41 YDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQ-YPELNALQEELKPYGLVVLGF 99
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQT---- 447
PCNQFG+QEP NKEI + + SF +F K V G F +L +
Sbjct: 100 PCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHP 159
Query: 448 ---------------SGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLI 582
+ WNF K+LV PDG V W +V ++ I A +++
Sbjct: 160 SEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFK 219
Query: 583 LK 588
K
Sbjct: 220 TK 221
>ref|NP_002074.2| glutathione peroxidase 2 [Homo sapiens].
Length = 190
Score = 86.7 bits (213), Expect = 3e-17
Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ FYD A+++ G+ V +RG L+ NVAS G T + + L +LQ P VL
Sbjct: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVL 64
Query: 289 AFPCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYL----- 438
FPCNQFG QE N+EI + + Y +F + K V G HP F YL
Sbjct: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124
Query: 439 ------------------TQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITA 564
+ + WNF K+L+ P+G+ + T I P I
Sbjct: 125 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 184
Query: 565 LVRKLI 582
L++ I
Sbjct: 185 LLKVAI 190
>ref|NP_002075.2| glutathione peroxidase 3 precursor [Homo sapiens].
Length = 226
Score = 81.3 bits (199), Expect = 1e-15
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 25/178 (14%)
Frame = +1
Query: 118 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y++ A+ I G+ + ++Y G L VNVAS G T Q Y L LQ +L P +L F
Sbjct: 41 YEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVILGF 99
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQ----- 444
PCNQFG+QEP N EI + + +F +F K V G + +L
Sbjct: 100 PCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPT 159
Query: 445 -----TSGK---EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 576
TS + EP WNF K+LV PDG + W +V ++ I + +R+
Sbjct: 160 SELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217
>ref|NP_874360.1| glutathione peroxidase 6 precursor [Homo sapiens].
Length = 221
Score = 72.0 bits (175), Expect = 7e-13
Identities = 55/178 (30%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Frame = +1
Query: 118 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y++ A+ + G+ + +++ G L VNVA+ G Q Y L LQ +L VLAF
Sbjct: 41 YEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQ-YPELNALQEELKNFGVIVLAF 99
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTSGK- 456
PCNQFG+QEP +N EI + + SF +F K V G F +L +
Sbjct: 100 PCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPT 159
Query: 457 ------------EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 576
EP WNF K+LV PDG V W V ++ I +++
Sbjct: 160 SDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,123,435
Number of extensions: 773835
Number of successful extensions: 2751
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2730
Number of HSP's successfully gapped: 11
Length of query: 305
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,934,836
Effective search space: 3031771708
Effective search space used: 3031771708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004309
(916 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077160.1| glutathione peroxidase 7 precursor [Mus musculu... 319 2e-87
Alignment gi|NP_081403.1| probable glutathione peroxidase 8 [Mus musculus]. 209 3e-54
Alignment gi|NP_032188.3| phospholipid hydroperoxide glutathione peroxida... 115 6e-26
Alignment gi|NP_001032830.2| phospholipid hydroperoxide glutathione perox... 115 6e-26
Alignment gi|NP_032186.2| glutathione peroxidase 1 [Mus musculus]. 92 6e-19
Alignment gi|NP_109602.2| glutathione peroxidase 2 [Mus musculus]. 87 2e-17
Alignment gi|NP_034473.2| epididymal secretory glutathione peroxidase pre... 87 2e-17
Alignment gi|NP_001077398.1| glutathione peroxidase 3 isoform 1 [Mus musc... 82 8e-16
Alignment gi|NP_032187.2| glutathione peroxidase 3 isoform 2 [Mus musculu... 82 8e-16
Alignment gi|NP_663426.2| glutathione peroxidase 6 precursor [Mus musculu... 81 1e-15
>ref|NP_077160.1| glutathione peroxidase 7 precursor [Mus musculus].
Length = 186
Score = 319 bits (817), Expect = 2e-87
Identities = 153/167 (91%), Positives = 160/167 (95%)
Frame = +1
Query: 100 QREQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHF 279
Q EQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQ+YRALQQLQRDLGPHHF
Sbjct: 19 QSEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQNYRALQQLQRDLGPHHF 78
Query: 280 NVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKE 459
NVLAFPCNQFGQQEPD+N+EIE+FARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKE
Sbjct: 79 NVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKE 138
Query: 460 PTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKRED 600
PTWNFWKYLV PDGKVVGAWDPTV V EI+P+IT V KLIL+KRED
Sbjct: 139 PTWNFWKYLVDPDGKVVGAWDPTVPVAEIKPRITEQVMKLILRKRED 185
>ref|NP_081403.1| probable glutathione peroxidase 8 [Mus musculus].
Length = 209
Score = 209 bits (531), Expect = 3e-54
Identities = 91/166 (54%), Positives = 126/166 (75%)
Frame = +1
Query: 103 REQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFN 282
R FY F+ + +G+ VSLEK++G SLVVNVAS+C FTD+ Y+ L++L ++ GP+HFN
Sbjct: 43 RTNSFYSFEVKDAKGRTVSLEKFKGKASLVVNVASDCRFTDKSYQTLRELHKEFGPYHFN 102
Query: 283 VLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEP 462
VLAFPCNQFG+ EP S+KE+ESFAR+ Y V+FP+F KI + G A PAF+++ +S KEP
Sbjct: 103 VLAFPCNQFGESEPKSSKEVESFARQNYGVTFPIFHKIKILGPEAEPAFRFIVDSSKKEP 162
Query: 463 TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKRED 600
WNFWKYLV P+G+VV W P +E IRP ++ ++ ++ILKK+ED
Sbjct: 163 RWNFWKYLVNPEGQVVKFWRPEEPLEAIRPHVSQMIGQIILKKKED 208
>ref|NP_032188.3| phospholipid hydroperoxide glutathione peroxidase, nuclear isoform
2 precursor [Mus musculus].
Length = 197
Score = 115 bits (287), Expect = 6e-26
Identities = 63/145 (43%), Positives = 85/145 (58%), Gaps = 6/145 (4%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ ++F A +I G +V L+KYRG V +V NVAS+ G TD +Y L L +L
Sbjct: 39 RSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRIL 98
Query: 289 AFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTS------ 450
AFPCNQFG+QEP SN+EI+ FA Y+V F M+SKI V G AHP +K++
Sbjct: 99 AFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGML 157
Query: 451 GKEPTWNFWKYLVAPDGKVVGAWDP 525
G WNF K+L+ +G VV + P
Sbjct: 158 GNAIKWNFTKFLIDKNGCVVKRYGP 182
>ref|NP_001032830.2| phospholipid hydroperoxide glutathione peroxidase, nuclear isoform
1 precursor [Mus musculus].
Length = 253
Score = 115 bits (287), Expect = 6e-26
Identities = 63/145 (43%), Positives = 85/145 (58%), Gaps = 6/145 (4%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ ++F A +I G +V L+KYRG V +V NVAS+ G TD +Y L L +L
Sbjct: 95 RSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRIL 154
Query: 289 AFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTS------ 450
AFPCNQFG+QEP SN+EI+ FA Y+V F M+SKI V G AHP +K++
Sbjct: 155 AFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGML 213
Query: 451 GKEPTWNFWKYLVAPDGKVVGAWDP 525
G WNF K+L+ +G VV + P
Sbjct: 214 GNAIKWNFTKFLIDKNGCVVKRYGP 238
>ref|NP_032186.2| glutathione peroxidase 1 [Mus musculus].
Length = 201
Score = 92.0 bits (227), Expect = 6e-19
Identities = 61/170 (35%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Frame = +1
Query: 145 GKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEP 324
G+ VSL RG V L+ NVAS G T + Y + LQ+ LGP VL FPCNQFG QE
Sbjct: 25 GEPVSLGSLRGKVLLIENVASLUGTTIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQEN 84
Query: 325 DSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQ---TSGKEPT----- 465
N+EI + + + +F +F K V G AHP F +L T +PT
Sbjct: 85 GKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTD 144
Query: 466 ---------------WNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALV 570
WNF K+LV PDG V + +I P I L+
Sbjct: 145 PKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDIETLL 194
>ref|NP_109602.2| glutathione peroxidase 2 [Mus musculus].
Length = 190
Score = 86.7 bits (213), Expect = 2e-17
Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ FYD AV + G+ + +RG L+ NVAS G T + Y L +LQ P VL
Sbjct: 6 KSFYDLSAVGLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYNQLNELQCRF-PRRLVVL 64
Query: 289 AFPCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYL----- 438
FPCNQFG QE N+EI + + Y +F + K V G HP F YL
Sbjct: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLP 124
Query: 439 ------------------TQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITA 564
+ + +WNF K+L+ P+G+ + + I P I
Sbjct: 125 YPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPDIKR 184
Query: 565 LVRKLI 582
L++ I
Sbjct: 185 LLKVAI 190
>ref|NP_034473.2| epididymal secretory glutathione peroxidase precursor [Mus
musculus].
Length = 221
Score = 86.7 bits (213), Expect = 2e-17
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 25/174 (14%)
Frame = +1
Query: 118 YDFKAVNIRGKL-VSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
YD++A+++ GK + ++Y G L VNVA+ CG T Q Y L LQ DL P +L F
Sbjct: 41 YDYEALSLNGKEHIPFKQYAGKHVLFVNVATYCGLTIQ-YPELNALQEDLKPFGLVILGF 99
Query: 295 PCNQFGQQEPDSNKEIESFAR-----RTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGK- 456
PCNQFG+QEP N EI + + + +F +F+K V G F +L ++
Sbjct: 100 PCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSCPHP 159
Query: 457 ------------EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITA 564
EP WNF K+LV PDG V W V ++ I A
Sbjct: 160 SETVVMSKHTFWEPIKVHDIRWNFEKFLVGPDGIPVMRWFHQAPVSTVKSDIMA 213
>ref|NP_001077398.1| glutathione peroxidase 3 isoform 1 [Mus musculus].
Length = 248
Score = 81.6 bits (200), Expect = 8e-16
Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 25/178 (14%)
Frame = +1
Query: 118 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y++ A+ I G+ + ++Y G L VNVAS G TDQ Y L LQ +LGP +L F
Sbjct: 63 YEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLTDQ-YLELNALQEELGPFGLVILGF 121
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTSGK- 456
P NQFG+QEP N EI + + +F +F K V G + +L +
Sbjct: 122 PSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPT 181
Query: 457 ------------EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 576
EP WNF K+LV PDG V W +V ++ I + +R+
Sbjct: 182 AELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDILSYMRR 239
>ref|NP_032187.2| glutathione peroxidase 3 isoform 2 [Mus musculus].
Length = 226
Score = 81.6 bits (200), Expect = 8e-16
Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 25/178 (14%)
Frame = +1
Query: 118 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y++ A+ I G+ + ++Y G L VNVAS G TDQ Y L LQ +LGP +L F
Sbjct: 41 YEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLTDQ-YLELNALQEELGPFGLVILGF 99
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTSGK- 456
P NQFG+QEP N EI + + +F +F K V G + +L +
Sbjct: 100 PSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPT 159
Query: 457 ------------EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 576
EP WNF K+LV PDG V W +V ++ I + +R+
Sbjct: 160 AELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDILSYMRR 217
>ref|NP_663426.2| glutathione peroxidase 6 precursor [Mus musculus].
Length = 221
Score = 81.3 bits (199), Expect = 1e-15
Identities = 58/161 (36%), Positives = 73/161 (45%), Gaps = 27/161 (16%)
Frame = +1
Query: 118 YDFKAVNIRG-KLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y++ A I G + V+ ++Y G L VNVAS CG T Y L LQ +L P + VL F
Sbjct: 41 YEYGANTIDGGEFVNFQQYAGKHILFVNVASFCGLTAT-YPELNTLQEELKPFNVTVLGF 99
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKE 459
PCNQFG+QEP N EI + Y +F +F K V G F +L +
Sbjct: 100 PCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSC--P 157
Query: 460 PT---------------------WNFWKYLVAPDGKVVGAW 519
PT WNF K+LV PDG V W
Sbjct: 158 PTSELFGSPEHLFWDPMKVHDIRWNFEKFLVGPDGVPVMRW 198
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,349,048
Number of extensions: 645544
Number of successful extensions: 2198
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2177
Number of HSP's successfully gapped: 10
Length of query: 305
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 204
Effective length of database: 12,583,923
Effective search space: 2567120292
Effective search space used: 2567120292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004309
(916 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361726.1| PREDICTED: glutathione peroxidase 7-like [Su... 252 2e-67
Alignment gi|XP_003134018.1| PREDICTED: probable glutathione peroxidase 8... 207 8e-54
Alignment gi|XP_003133997.2| PREDICTED: probable glutathione peroxidase 8... 187 7e-48
Alignment gi|NP_999572.1| phospholipid hydroperoxide glutathione peroxida... 112 2e-25
Alignment gi|NP_999366.1| glutathione peroxidase 1 [Sus scrofa]. 91 1e-18
Alignment gi|NP_001108608.1| glutathione peroxidase 2 [Sus scrofa]. 86 4e-17
Alignment gi|NP_999051.1| epididymal secretory glutathione peroxidase pre... 84 1e-16
Alignment gi|NP_001108627.1| glutathione peroxidase 3 [Sus scrofa]. 82 3e-16
Alignment gi|NP_001131079.1| glutathione peroxidase 6 [Sus scrofa]. 77 1e-14
>ref|XP_003361726.1| PREDICTED: glutathione peroxidase 7-like [Sus scrofa].
Length = 242
Score = 252 bits (643), Expect = 2e-67
Identities = 124/131 (94%), Positives = 125/131 (95%)
Frame = +1
Query: 208 ECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMF 387
+ GFTDQHYRALQQLQRDLG VLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMF
Sbjct: 115 DTGFTDQHYRALQQLQRDLGX----VLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMF 170
Query: 388 SKIAVTGTGAHPAFKYLTQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITAL 567
SKIAVTGTGAHPAFKYLTQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITAL
Sbjct: 171 SKIAVTGTGAHPAFKYLTQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITAL 230
Query: 568 VRKLILKKRED 600
VRKLILKKRED
Sbjct: 231 VRKLILKKRED 241
>ref|XP_003134018.1| PREDICTED: probable glutathione peroxidase 8-like [Sus scrofa].
Length = 209
Score = 207 bits (526), Expect = 8e-54
Identities = 92/162 (56%), Positives = 126/162 (77%)
Frame = +1
Query: 115 FYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
FY+F+ + +G+ VSLEK++G V+LVVNVAS+C TD++Y ALQ+L ++ GP HF+VLAF
Sbjct: 47 FYNFEVKDAKGRTVSLEKFKGKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAF 106
Query: 295 PCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEPTWNF 474
PCNQFG+ EP +KE+ SFAR Y V+FP+F KI + G+ A PAF++L +S KEP WNF
Sbjct: 107 PCNQFGESEPRPSKEVLSFARNNYGVTFPIFHKIKILGSEAEPAFRFLVDSSKKEPRWNF 166
Query: 475 WKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKRED 600
WKYLV P+G+VV W P +E IRP+I AL+R++I+KK+ED
Sbjct: 167 WKYLVNPEGQVVKYWRPEEPIEVIRPEIAALIRQMIIKKKED 208
>ref|XP_003133997.2| PREDICTED: probable glutathione peroxidase 8-like [Sus scrofa].
Length = 209
Score = 187 bits (475), Expect = 7e-48
Identities = 84/162 (51%), Positives = 117/162 (72%)
Frame = +1
Query: 115 FYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
FY+F+ + +G+ + V+LVVNVAS+C TD++Y ALQ+L ++ GP HF+VLAF
Sbjct: 47 FYNFEVKDAKGRTXXXXXFFREVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAF 106
Query: 295 PCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEPTWNF 474
PCNQFG+ EP +KE+ SFAR Y V+FP+F KI + G+ A PAF++L +S KEP WNF
Sbjct: 107 PCNQFGESEPRPSKEVLSFARNNYGVTFPIFHKIKILGSEAEPAFRFLVDSSKKEPRWNF 166
Query: 475 WKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKRED 600
WKYLV P+G+VV W P +E RP+I L+R++I+KK+ED
Sbjct: 167 WKYLVNPEGQVVKYWRPEEPIEVNRPEIAVLIRQMIIKKKED 208
>ref|NP_999572.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
precursor [Sus scrofa].
Length = 197
Score = 112 bits (281), Expect = 2e-25
Identities = 62/145 (42%), Positives = 85/145 (58%), Gaps = 6/145 (4%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ ++F A +I G +V+L+KYRG V +V NVAS+ G T+ +Y L L +L
Sbjct: 39 RSMHEFSAKDIDGHMVNLDKYRGYVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 98
Query: 289 AFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTS------ 450
AFPCNQFG+QEP S+ EI+ FA Y+V F MFSKI V G AHP +K++
Sbjct: 99 AFPCNQFGRQEPGSDAEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKVQPKGRGML 157
Query: 451 GKEPTWNFWKYLVAPDGKVVGAWDP 525
G WNF K+L+ +G VV + P
Sbjct: 158 GNAIKWNFTKFLIDKNGCVVKRYGP 182
>ref|NP_999366.1| glutathione peroxidase 1 [Sus scrofa].
Length = 206
Score = 90.5 bits (223), Expect = 1e-18
Identities = 60/170 (35%), Positives = 79/170 (46%), Gaps = 28/170 (16%)
Frame = +1
Query: 145 GKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEP 324
G+ +SL RG V L+ NVAS G T + Y + +LQR LGP VL FPCNQFG QE
Sbjct: 30 GEPISLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 89
Query: 325 DSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQ---TSGKEPT----- 465
N EI + + + +F +F K V G AHP F +L + T + T
Sbjct: 90 AKNGEILNCLKYVRPGGGFEPNFMLFEKCEVNGANAHPLFAFLREALPTPSDDATALMTD 149
Query: 466 ---------------WNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALV 570
WNF K+LV PDG + + +I P I AL+
Sbjct: 150 PKFITWSPVCRNDIAWNFEKFLVGPDGVPLRRYSRRFLTIDIEPDIEALL 199
>ref|NP_001108608.1| glutathione peroxidase 2 [Sus scrofa].
Length = 190
Score = 85.5 bits (210), Expect = 4e-17
Identities = 55/186 (29%), Positives = 81/186 (43%), Gaps = 28/186 (15%)
Frame = +1
Query: 109 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 288
+ FYD A+++ G+ V +RG L+ NVAS G T + + L +LQ P VL
Sbjct: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVL 64
Query: 289 AFPCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYL----- 438
FPCNQFG QE N+EI + + + +F + K V G HP F YL
Sbjct: 65 GFPCNQFGHQENCQNEEILNSLKYVRPGGGFQPTFTLIQKCDVNGQNEHPVFAYLKDKLP 124
Query: 439 ------------------TQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITA 564
+ + +WNF K+L+ P+G+ + T I P I
Sbjct: 125 YPYDDPFSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 184
Query: 565 LVRKLI 582
L++ I
Sbjct: 185 LLKVAI 190
>ref|NP_999051.1| epididymal secretory glutathione peroxidase precursor [Sus scrofa].
Length = 219
Score = 84.0 bits (206), Expect = 1e-16
Identities = 59/178 (33%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Frame = +1
Query: 118 YDFKAVNIRG-KLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
YD+ A + G + + ++Y G L VNVA+ CG T Q Y L LQ +L P VL F
Sbjct: 39 YDYDAFTLNGNEHIQFKQYAGKHVLFVNVATYCGLTAQ-YPELNTLQEELKPFGLVVLGF 97
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTS--- 450
PCNQFG+QEP N EI + Y +F +F K V G F +L +
Sbjct: 98 PCNQFGKQEPGENSEILLGLKYVRPGGGYVPNFQLFEKGDVNGEKEQKVFTFLKHSCPHP 157
Query: 451 ----------GKEP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 576
EP WNF K+LV PDG V W + ++ I A +++
Sbjct: 158 SELIGSIGYISWEPIRVHDIRWNFEKFLVGPDGVPVMRWVHETPISTVKSDILAYLKQ 215
>ref|NP_001108627.1| glutathione peroxidase 3 [Sus scrofa].
Length = 226
Score = 82.4 bits (202), Expect = 3e-16
Identities = 59/178 (33%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Frame = +1
Query: 118 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y++ A+ I G+ + +KY G L VNVAS G T Q Y L LQ + P +L F
Sbjct: 41 YEYGALTIDGEEYIPFKKYAGKYVLFVNVASYUGLTGQ-YVELNALQEEFEPFGLVILGF 99
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTSGK- 456
PCNQFG+QEP N EI S R + +F +F K V G + +L
Sbjct: 100 PCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPT 159
Query: 457 ------------EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 576
EP WNF K+LV PDG V W ++ ++ I A +R+
Sbjct: 160 SELLGSPSRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 217
>ref|NP_001131079.1| glutathione peroxidase 6 [Sus scrofa].
Length = 221
Score = 77.4 bits (189), Expect = 1e-14
Identities = 57/178 (32%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Frame = +1
Query: 118 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 294
Y++ A+ + G+ + ++Y G L VNVA+ G T Q Y L LQ +L P VL F
Sbjct: 41 YEYGALTLNGEEYIPFKQYAGKHVLFVNVATYUGLTAQ-YPELNALQEELKPFGVVVLGF 99
Query: 295 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQTSGK- 456
PCNQFG+QEP N EI + + +F +F K V G F +L +
Sbjct: 100 PCNQFGKQEPAKNSEILLGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLKNSCPPT 159
Query: 457 ------------EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 576
EP WNF K+LV PDG V W SV ++ I +++
Sbjct: 160 SDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRASVSTVKSDIMEYLKQ 217
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,542,252
Number of extensions: 492324
Number of successful extensions: 1795
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1780
Number of HSP's successfully gapped: 9
Length of query: 305
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 206
Effective length of database: 8,879,129
Effective search space: 1829100574
Effective search space used: 1829100574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004309
(916 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895158.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 932 0.0
>gb|GL895158.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3751
Length = 43166
Score = 932 bits (470), Expect = 0.0
Identities = 473/474 (99%)
Strand = Plus / Minus
Query: 443 agacttccgggaaggagcccacctggaacttctggaagtacctcgtggccccagatggaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8377 agacttccgggaaggagcccacctggaacttctggaagtacctcgtggccccagatggaa 8318
Query: 503 aggtagtaggggcttgggacccaaccgtgtcggtggaggagatcaggcctcagattacgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8317 aggtagtaggggcttgggacccaaccgtgtcggtggaggagatcaggcctcagattacgg 8258
Query: 563 cgcttgtgaggaagctcatcctgaagaagcgagaagacttgtaaccactttcccttcctc 622
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8257 cgctcgtgaggaagctcatcctgaagaagcgagaagacttgtaaccactttcccttcctc 8198
Query: 623 tcccactgccccctaccccatgcacaggtgaccaaagcaaacgcaaatggtgctacaaag 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8197 tcccactgccccctaccccatgcacaggtgaccaaagcaaacgcaaatggtgctacaaag 8138
Query: 683 ggagagactactgactctcccttctcctctcttatccccccaccccatcactcccgtggg 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8137 ggagagactactgactctcccttctcctctcttatccccccaccccatcactcccgtggg 8078
Query: 743 cggaaaagtctagcagttggattgcttgcatcttggagcaccgtctcggaactcctgacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8077 cggaaaagtctagcagttggattgcttgcatcttggagcaccgtctcggaactcctgacc 8018
Query: 803 agtgagagctcttgaccagtcattcaccagccaataagaacctctagcgcatgaacacat 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8017 agtgagagctcttgaccagtcattcaccagccaataagaacctctagcgcatgaacacat 7958
Query: 863 gtgcctaacaagtctttcaagcaatcatctcctacctgttaagaactctgcaaa 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7957 gtgcctaacaagtctttcaagcaatcatctcctacctgttaagaactctgcaaa 7904
Score = 367 bits (185), Expect = 7e-99
Identities = 219/233 (93%), Gaps = 12/233 (5%)
Strand = Plus / Minus
Query: 210 gtgtggcttcacagaccagcactaccgcgccctgcagcagctgcagagggacctggggcc 269
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10160 gtgtggcttcacagaccagcactaccgcgccctgcagcagctgcagagggacctggggcn 10101
Query: 270 ccaccacttcaacgtgctcgccttcccctgcaaccagtttggtcagcaggagcccgacag 329
| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10100 c------------gtgctcgccttcccctgcaaccagtttggtcagcaggagcccgacag 10053
Query: 330 caacaaggagatcgagagcttcgcccgtcgcacctacagtgtctctttccccatgttcag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10052 caacaaggagatcgagagcttcgcccgtcgcacctacagtgtctctttccccatgttcag 9993
Query: 390 caagatcgcagtcacgggcacaggggcccaccctgccttcaagtacctgaccc 442
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 9992 caagatcgcagtcacaggcacaggggcccaccctgccttcaagtacctgaccc 9940
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,057,216
Number of extensions: 169
Number of successful extensions: 169
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 3
Length of query: 916
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 895
Effective length of database: 2,808,413,156
Effective search space: 2513529774620
Effective search space used: 2513529774620
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)