Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004312
(1047 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193193.1| dual specificity protein kinase CLK2 [Bos ta... 301 8e-82
Alignment gi|NP_001029420.1| dual specificity protein kinase CLK3 [Bos ta... 170 2e-42
Alignment gi|NP_001179917.1| dual specificity protein kinase CLK4 [Bos ta... 142 6e-34
Alignment gi|XP_002689074.1| PREDICTED: CDC-like kinase 4 [Bos taurus]. 142 6e-34
Alignment gi|NP_001095741.1| CDC-like kinase 1 [Bos taurus]. 118 1e-26
Alignment gi|XP_002687945.1| PREDICTED: smell impaired 35A-like [Bos taur... 89 5e-18
Alignment gi|XP_609767.4| PREDICTED: smell impaired 35A-like [Bos taurus]. 89 5e-18
Alignment gi|NP_001069025.1| serine/threonine-protein kinase PRP4 homolog... 79 7e-15
Alignment gi|XP_002687443.1| PREDICTED: dual-specificity tyrosine-(Y)-pho... 77 3e-14
Alignment gi|XP_592833.4| PREDICTED: dual-specificity tyrosine-(Y)-phosph... 77 3e-14
>ref|NP_001193193.1| dual specificity protein kinase CLK2 [Bos taurus].
Length = 499
Score = 301 bits (770), Expect = 8e-82
Identities = 155/247 (62%), Positives = 158/247 (63%)
Frame = +1
Query: 307 MPHPRRYHSSERGSRGSYHEHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 486
MPHPRRYHSSERGSRGSYHEHY
Sbjct: 1 MPHPRRYHSSERGSRGSYHEHYRSRKHKRRRSRSWSSSSDRTRRRRREDSYHVRSRSSYD 60
Query: 487 XXXXXXXXXXXXXCGSYRRNDYSRDRAEAYYDTDYRHSFEYHRENXXXXXXXXXXXXXXX 666
CGSYRRNDYSRDR EAYYDTDYRHS+EYHREN
Sbjct: 61 DRSSDRRAYDRRYCGSYRRNDYSRDRGEAYYDTDYRHSYEYHRENSSYRSQRSSRRKHRR 120
Query: 667 XXXXXXXXXXXXXXXXXXXXXXVEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQC 846
VEDDAEGHLIYHVGDWLQERYEI+STLGEGTFGRVVQC
Sbjct: 121 RRRRSRTFSRSSSHSSRRAKS-VEDDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQC 179
Query: 847 VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMC 1026
VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKI+EKDPDNKNLCVQMFDWFDYHGHMC
Sbjct: 180 VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMC 239
Query: 1027 ISFELLG 1047
ISFELLG
Sbjct: 240 ISFELLG 246
>ref|NP_001029420.1| dual specificity protein kinase CLK3 [Bos taurus].
Length = 490
Score = 170 bits (431), Expect = 2e-42
Identities = 77/105 (73%), Positives = 92/105 (87%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
VEDD EGHL+ +GDWLQERYEI+ LGEGTFG+VV+C+DH RG ++VALKII+NV KY+
Sbjct: 136 VEDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYR 195
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAARLEINVL+KI EKD +NK LCV M DWF++HGHMCI+FELLG
Sbjct: 196 EAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 240
>ref|NP_001179917.1| dual specificity protein kinase CLK4 [Bos taurus].
Length = 481
Score = 142 bits (357), Expect = 6e-34
Identities = 64/105 (60%), Positives = 81/105 (77%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
+EDD EGHLI GD L+ RYEI+ TLGEG FG+VV+C+DH G VA+KI+KNV +Y+
Sbjct: 139 IEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHDMDGIHVAVKIVKNVGRYR 198
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAAR EI VLE ++ DP++ CVQM +WFD+HGH+CI FELLG
Sbjct: 199 EAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLG 243
>ref|XP_002689074.1| PREDICTED: CDC-like kinase 4 [Bos taurus].
Length = 481
Score = 142 bits (357), Expect = 6e-34
Identities = 64/105 (60%), Positives = 81/105 (77%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
+EDD EGHLI GD L+ RYEI+ TLGEG FG+VV+C+DH G VA+KI+KNV +Y+
Sbjct: 139 IEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHDMDGIHVAVKIVKNVGRYR 198
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAAR EI VLE ++ DP++ CVQM +WFD+HGH+CI FELLG
Sbjct: 199 EAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLG 243
>ref|NP_001095741.1| CDC-like kinase 1 [Bos taurus].
Length = 347
Score = 118 bits (295), Expect = 1e-26
Identities = 51/84 (60%), Positives = 67/84 (79%)
Frame = +1
Query: 796 EIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNK 975
EI+ TLGEG FG+VV+C+DH+ GG VA+KI+KNV++Y EAAR EI VLE ++ DP +
Sbjct: 25 EIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPSST 84
Query: 976 NLCVQMFDWFDYHGHMCISFELLG 1047
CVQM +WF++HGH+CI FELLG
Sbjct: 85 FRCVQMLEWFEHHGHVCIVFELLG 108
>ref|XP_002687945.1| PREDICTED: smell impaired 35A-like [Bos taurus].
Length = 622
Score = 89.4 bits (220), Expect = 5e-18
Identities = 42/103 (40%), Positives = 66/103 (64%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD G + + D + RYE++ +G+G+FG+V +C+DH+ VALKII+N +++
Sbjct: 187 DDEHGSYMKVLHDHIAYRYEVLEIIGKGSFGQVAKCLDHKNNEL-VALKIIRNKKRFHHQ 245
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
A +E+ +LE + KD DN V M D+F + H+CI+FELLG
Sbjct: 246 ALVELKILEALRRKDKDNTYNVVHMKDFFYFRNHLCITFELLG 288
>ref|XP_609767.4| PREDICTED: smell impaired 35A-like [Bos taurus].
Length = 622
Score = 89.4 bits (220), Expect = 5e-18
Identities = 42/103 (40%), Positives = 66/103 (64%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD G + + D + RYE++ +G+G+FG+V +C+DH+ VALKII+N +++
Sbjct: 187 DDEHGSYMKVLHDHIAYRYEVLEIIGKGSFGQVAKCLDHKNNEL-VALKIIRNKKRFHHQ 245
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
A +E+ +LE + KD DN V M D+F + H+CI+FELLG
Sbjct: 246 ALVELKILEALRRKDKDNTYNVVHMKDFFYFRNHLCITFELLG 288
>ref|NP_001069025.1| serine/threonine-protein kinase PRP4 homolog [Bos taurus].
Length = 1008
Score = 79.0 bits (193), Expect = 7e-15
Identities = 37/101 (36%), Positives = 62/101 (61%)
Frame = +1
Query: 742 DAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAA 921
DAEG+ ++G+ L +RY + G+G F VV+ D+ R VA+KII+N E ++
Sbjct: 671 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTG 730
Query: 922 RLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
E+ L+K+++ DPD+K C+++F F + H+C+ FE L
Sbjct: 731 LKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPL 771
>ref|XP_002687443.1| PREDICTED: dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 2-like [Bos taurus].
Length = 599
Score = 77.0 bits (188), Expect = 3e-14
Identities = 36/102 (35%), Positives = 63/102 (61%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD +G + D + RYE++ +G+G+FG+VV+ DH+ VALK+++N +++
Sbjct: 202 DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVH-QHVALKMVRNEKRFHRQ 260
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
A EI +LE + ++D DN + M + F + H+C++FELL
Sbjct: 261 AAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELL 302
>ref|XP_592833.4| PREDICTED: dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 2-like [Bos taurus].
Length = 599
Score = 77.0 bits (188), Expect = 3e-14
Identities = 36/102 (35%), Positives = 63/102 (61%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD +G + D + RYE++ +G+G+FG+VV+ DH+ VALK+++N +++
Sbjct: 202 DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVH-QHVALKMVRNEKRFHRQ 260
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
A EI +LE + ++D DN + M + F + H+C++FELL
Sbjct: 261 AAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELL 302
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,344,912
Number of extensions: 925305
Number of successful extensions: 8075
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 7688
Number of HSP's successfully gapped: 27
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004312
(1047 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547549.2| PREDICTED: similar to Dual specificity protein ... 334 7e-92
Alignment gi|XP_535541.2| PREDICTED: similar to Dual specificity protein ... 170 2e-42
Alignment gi|XP_531875.2| PREDICTED: similar to CDC-like kinase 4 isoform... 142 7e-34
Alignment gi|XP_867036.1| PREDICTED: similar to Dual specificity protein ... 133 2e-31
Alignment gi|XP_849141.1| PREDICTED: similar to CDC-like kinase 1 isoform... 118 1e-26
Alignment gi|XP_857818.1| PREDICTED: similar to CDC-like kinase 4 isoform... 116 4e-26
Alignment gi|XP_534917.2| PREDICTED: similar to dual-specificity tyrosine... 89 5e-18
Alignment gi|XP_857777.1| PREDICTED: similar to Dual specificity protein ... 84 2e-16
Alignment gi|XP_857694.1| PREDICTED: similar to Dual specificity protein ... 84 2e-16
Alignment gi|XP_857654.1| PREDICTED: similar to Dual specificity protein ... 84 2e-16
>ref|XP_547549.2| PREDICTED: similar to Dual specificity protein kinase CLK2 (CDC-like
kinase 2) isoform 1 [Canis familiaris].
Length = 536
Score = 334 bits (857), Expect = 7e-92
Identities = 174/274 (63%), Positives = 177/274 (64%)
Frame = +1
Query: 226 GCRDSGRSAAAITDFLWDKRTGLAARTMPHPRRYHSSERGSRGSYHEHYXXXXXXXXXXX 405
G SGRSAAAITDFLWDKRTGLAARTMPHPRRYHSSERGSRGSYHEHY
Sbjct: 10 GAGASGRSAAAITDFLWDKRTGLAARTMPHPRRYHSSERGSRGSYHEHYRSRKHKRRRSR 69
Query: 406 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGSYRRNDYSRDRAEAYYDT 585
GSYRRN SRDR EAY D
Sbjct: 70 SWSSSSDRTRRRRREDSYHVRSRSSYDDRSSDRRVYDRRYYGSYRRNGCSRDRGEAYCDP 129
Query: 586 DYRHSFEYHRENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEDDAEGHLIY 765
DYRHS+EYHREN VEDDAEGHLIY
Sbjct: 130 DYRHSYEYHRENSSYRSQRSSRRKHRRRRRRSRTFSRSSSQHSSRRAKSVEDDAEGHLIY 189
Query: 766 HVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLE 945
HVGDWLQERYEI+STLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLE
Sbjct: 190 HVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLE 249
Query: 946 KIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
KI+EKDPDNKNLCVQMFDWFDYHGHMCISFELLG
Sbjct: 250 KINEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 283
>ref|XP_535541.2| PREDICTED: similar to Dual specificity protein kinase CLK3 (CDC-like
kinase 3) isoform 1 [Canis familiaris].
Length = 381
Score = 170 bits (431), Expect = 2e-42
Identities = 77/105 (73%), Positives = 92/105 (87%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
VEDD EGHL+ +GDWLQERYEI+ LGEGTFG+VV+C+DH RG ++VALKII+NV KY+
Sbjct: 27 VEDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYR 86
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAARLEINVL+KI EKD +NK LCV M DWF++HGHMCI+FELLG
Sbjct: 87 EAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 131
>ref|XP_531875.2| PREDICTED: similar to CDC-like kinase 4 isoform 1 [Canis familiaris].
Length = 481
Score = 142 bits (357), Expect = 7e-34
Identities = 64/105 (60%), Positives = 81/105 (77%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
+EDD EGHLI GD L+ RYEI+ TLGEG FG+VV+C+DH G VA+KI+KNV +Y+
Sbjct: 139 IEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGIHVAVKIVKNVGRYR 198
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAAR EI VLE ++ DP++ CVQM +WFD+HGH+CI FELLG
Sbjct: 199 EAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLG 243
>ref|XP_867036.1| PREDICTED: similar to Dual specificity protein kinase CLK3 (CDC-like
kinase 3) isoform 3 [Canis familiaris].
Length = 343
Score = 133 bits (335), Expect = 2e-31
Identities = 61/84 (72%), Positives = 74/84 (88%)
Frame = +1
Query: 796 EIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNK 975
EI+ LGEGTFG+VV+C+DH RG ++VALKII+NV KY+EAARLEINVL+KI EKD +NK
Sbjct: 10 EIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENK 69
Query: 976 NLCVQMFDWFDYHGHMCISFELLG 1047
LCV M DWF++HGHMCI+FELLG
Sbjct: 70 FLCVLMSDWFNFHGHMCIAFELLG 93
>ref|XP_849141.1| PREDICTED: similar to CDC-like kinase 1 isoform 1 isoform 5 [Canis
familiaris].
Length = 343
Score = 118 bits (295), Expect = 1e-26
Identities = 51/84 (60%), Positives = 67/84 (79%)
Frame = +1
Query: 796 EIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNK 975
EI+ TLGEG FG+VV+C+DH+ GG VA+KI+KNV++Y EAAR EI VLE ++ DP +
Sbjct: 21 EIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPSST 80
Query: 976 NLCVQMFDWFDYHGHMCISFELLG 1047
CVQM +WF++HGH+CI FELLG
Sbjct: 81 FRCVQMLEWFEHHGHICIVFELLG 104
>ref|XP_857818.1| PREDICTED: similar to CDC-like kinase 4 isoform 5 [Canis familiaris].
Length = 453
Score = 116 bits (290), Expect = 4e-26
Identities = 51/84 (60%), Positives = 66/84 (78%)
Frame = +1
Query: 796 EIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNK 975
EI+ TLGEG FG+VV+C+DH G VA+KI+KNV +Y+EAAR EI VLE ++ DP++
Sbjct: 132 EIVDTLGEGAFGKVVECIDHGMDGIHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSV 191
Query: 976 NLCVQMFDWFDYHGHMCISFELLG 1047
CVQM +WFD+HGH+CI FELLG
Sbjct: 192 FRCVQMLEWFDHHGHVCIVFELLG 215
>ref|XP_534917.2| PREDICTED: similar to dual-specificity tyrosine-(Y)-phosphorylation
regulated kinase 4 [Canis familiaris].
Length = 565
Score = 89.4 bits (220), Expect = 5e-18
Identities = 42/103 (40%), Positives = 66/103 (64%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD G + + D + RYE++ +G+G+FG+V +C+DH+ VALKII+N +++
Sbjct: 134 DDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNEL-VALKIIRNKKRFHHQ 192
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
A +E+ +LE + KD DN V M D+F + H+CI+FELLG
Sbjct: 193 ALVELKILEALRRKDKDNTYNVVHMKDFFYFRNHLCITFELLG 235
>ref|XP_857777.1| PREDICTED: similar to Dual specificity protein kinase CLK4 (CDC-like
kinase 4) isoform 4 [Canis familiaris].
Length = 301
Score = 84.0 bits (206), Expect = 2e-16
Identities = 37/61 (60%), Positives = 48/61 (78%)
Frame = +1
Query: 865 GARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
G VA+KI+KNV +Y+EAAR EI VLE ++ DP++ CVQM +WFD+HGH+CI FELL
Sbjct: 3 GIHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELL 62
Query: 1045 G 1047
G
Sbjct: 63 G 63
>ref|XP_857694.1| PREDICTED: similar to Dual specificity protein kinase CLK4 (CDC-like
kinase 4) isoform 3 [Canis familiaris].
Length = 301
Score = 84.0 bits (206), Expect = 2e-16
Identities = 37/61 (60%), Positives = 48/61 (78%)
Frame = +1
Query: 865 GARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
G VA+KI+KNV +Y+EAAR EI VLE ++ DP++ CVQM +WFD+HGH+CI FELL
Sbjct: 3 GIHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELL 62
Query: 1045 G 1047
G
Sbjct: 63 G 63
>ref|XP_857654.1| PREDICTED: similar to Dual specificity protein kinase CLK4 (CDC-like
kinase 4) isoform 2 [Canis familiaris].
Length = 301
Score = 84.0 bits (206), Expect = 2e-16
Identities = 37/61 (60%), Positives = 48/61 (78%)
Frame = +1
Query: 865 GARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
G VA+KI+KNV +Y+EAAR EI VLE ++ DP++ CVQM +WFD+HGH+CI FELL
Sbjct: 3 GIHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELL 62
Query: 1045 G 1047
G
Sbjct: 63 G 63
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,860,957
Number of extensions: 954867
Number of successful extensions: 8310
Number of sequences better than 1.0e-05: 63
Number of HSP's gapped: 7900
Number of HSP's successfully gapped: 64
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004312
(1047 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003984.2| dual specificity protein kinase CLK2 [Homo sapi... 293 1e-79
Alignment gi|NP_001123500.1| dual specificity protein kinase CLK3 isoform... 170 2e-42
Alignment gi|NP_003983.2| dual specificity protein kinase CLK3 isoform b ... 170 2e-42
Alignment gi|NP_001155879.1| dual specificity protein kinase CLK1 isoform... 144 1e-34
Alignment gi|NP_004062.2| dual specificity protein kinase CLK1 isoform 1 ... 144 1e-34
Alignment gi|NP_065717.1| dual specificity protein kinase CLK4 [Homo sapi... 142 7e-34
Alignment gi|NP_003836.1| dual specificity tyrosine-phosphorylation-regul... 93 5e-19
Alignment gi|NP_003904.3| serine/threonine-protein kinase PRP4 homolog [H... 79 7e-15
Alignment gi|NP_006473.2| dual specificity tyrosine-phosphorylation-regul... 77 3e-14
Alignment gi|NP_003574.1| dual specificity tyrosine-phosphorylation-regul... 77 3e-14
>ref|NP_003984.2| dual specificity protein kinase CLK2 [Homo sapiens].
Length = 498
Score = 293 bits (751), Expect = 1e-79
Identities = 152/247 (61%), Positives = 156/247 (63%)
Frame = +1
Query: 307 MPHPRRYHSSERGSRGSYHEHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 486
MPHPRRYHSSERGSRGSY EHY
Sbjct: 1 MPHPRRYHSSERGSRGSYREHYRSRKHKRRRSRSWSSSSDRTRRRRREDSYHVRSRSSYD 60
Query: 487 XXXXXXXXXXXXXCGSYRRNDYSRDRAEAYYDTDYRHSFEYHRENXXXXXXXXXXXXXXX 666
CGSYRRNDYSRDR +AYYDTDYRHS+EY REN
Sbjct: 61 DRSSDRRVYDRRYCGSYRRNDYSRDRGDAYYDTDYRHSYEYQRENSSYRSQRSSRRKHRR 120
Query: 667 XXXXXXXXXXXXXXXXXXXXXXVEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQC 846
VEDDAEGHLIYHVGDWLQERYEI+STLGEGTFGRVVQC
Sbjct: 121 RRRRSRTFSRSSSHSSRRAKS-VEDDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQC 179
Query: 847 VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMC 1026
VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKI+EKDPDNKNLCVQMFDWFDYHGHMC
Sbjct: 180 VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMC 239
Query: 1027 ISFELLG 1047
ISFELLG
Sbjct: 240 ISFELLG 246
>ref|NP_001123500.1| dual specificity protein kinase CLK3 isoform a [Homo sapiens].
Length = 638
Score = 170 bits (431), Expect = 2e-42
Identities = 77/105 (73%), Positives = 92/105 (87%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
VEDD EGHL+ +GDWLQERYEI+ LGEGTFG+VV+C+DH RG ++VALKII+NV KY+
Sbjct: 284 VEDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYR 343
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAARLEINVL+KI EKD +NK LCV M DWF++HGHMCI+FELLG
Sbjct: 344 EAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 388
>ref|NP_003983.2| dual specificity protein kinase CLK3 isoform b [Homo sapiens].
Length = 490
Score = 170 bits (431), Expect = 2e-42
Identities = 77/105 (73%), Positives = 92/105 (87%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
VEDD EGHL+ +GDWLQERYEI+ LGEGTFG+VV+C+DH RG ++VALKII+NV KY+
Sbjct: 136 VEDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYR 195
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAARLEINVL+KI EKD +NK LCV M DWF++HGHMCI+FELLG
Sbjct: 196 EAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 240
>ref|NP_001155879.1| dual specificity protein kinase CLK1 isoform 2 [Homo sapiens].
Length = 526
Score = 144 bits (363), Expect = 1e-34
Identities = 65/105 (61%), Positives = 82/105 (78%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
VEDD EGHLI GD L RYEI+ TLGEG FG+VV+C+DH+ GG VA+KI+KNV++Y
Sbjct: 183 VEDDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYC 242
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAAR EI VLE ++ DP++ CVQM +WF++HGH+CI FELLG
Sbjct: 243 EAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLG 287
>ref|NP_004062.2| dual specificity protein kinase CLK1 isoform 1 [Homo sapiens].
Length = 484
Score = 144 bits (363), Expect = 1e-34
Identities = 65/105 (61%), Positives = 82/105 (78%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
VEDD EGHLI GD L RYEI+ TLGEG FG+VV+C+DH+ GG VA+KI+KNV++Y
Sbjct: 141 VEDDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYC 200
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAAR EI VLE ++ DP++ CVQM +WF++HGH+CI FELLG
Sbjct: 201 EAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLG 245
>ref|NP_065717.1| dual specificity protein kinase CLK4 [Homo sapiens].
Length = 481
Score = 142 bits (357), Expect = 7e-34
Identities = 64/105 (60%), Positives = 81/105 (77%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
+EDD EGHLI GD L+ RYEI+ TLGEG FG+VV+C+DH G VA+KI+KNV +Y+
Sbjct: 139 IEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNVGRYR 198
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAAR EI VLE ++ DP++ CVQM +WFD+HGH+CI FELLG
Sbjct: 199 EAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLG 243
>ref|NP_003836.1| dual specificity tyrosine-phosphorylation-regulated kinase 4 [Homo
sapiens].
Length = 520
Score = 92.8 bits (229), Expect = 5e-19
Identities = 43/103 (41%), Positives = 68/103 (66%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD G + + D + RYE++ T+G+G+FG+V +C+DH+ VALKII+N +++ +
Sbjct: 86 DDEHGFYLKVLHDHIAYRYEVLETIGKGSFGQVAKCLDHKNNEL-VALKIIRNKKRFHQQ 144
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
A +E+ +LE + +KD DN V M D+F + H CI+FELLG
Sbjct: 145 ALMELKILEALRKKDKDNTYNVVHMKDFFYFRNHFCITFELLG 187
>ref|NP_003904.3| serine/threonine-protein kinase PRP4 homolog [Homo sapiens].
Length = 1007
Score = 79.0 bits (193), Expect = 7e-15
Identities = 37/101 (36%), Positives = 62/101 (61%)
Frame = +1
Query: 742 DAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAA 921
DAEG+ ++G+ L +RY + G+G F VV+ D+ R VA+KII+N E ++
Sbjct: 670 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTG 729
Query: 922 RLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
E+ L+K+++ DPD+K C+++F F + H+C+ FE L
Sbjct: 730 LKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPL 770
>ref|NP_006473.2| dual specificity tyrosine-phosphorylation-regulated kinase 2 isoform
2 [Homo sapiens].
Length = 601
Score = 77.0 bits (188), Expect = 3e-14
Identities = 36/102 (35%), Positives = 63/102 (61%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD +G + D + RYE++ +G+G+FG+VV+ DH+ VALK+++N +++
Sbjct: 204 DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVH-QHVALKMVRNEKRFHRQ 262
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
A EI +LE + ++D DN + M + F + H+C++FELL
Sbjct: 263 AAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELL 304
>ref|NP_003574.1| dual specificity tyrosine-phosphorylation-regulated kinase 2 isoform
1 [Homo sapiens].
Length = 528
Score = 77.0 bits (188), Expect = 3e-14
Identities = 36/102 (35%), Positives = 63/102 (61%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD +G + D + RYE++ +G+G+FG+VV+ DH+ VALK+++N +++
Sbjct: 131 DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVH-QHVALKMVRNEKRFHRQ 189
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
A EI +LE + ++D DN + M + F + H+C++FELL
Sbjct: 190 AAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELL 231
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,995,826
Number of extensions: 919179
Number of successful extensions: 7811
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 7416
Number of HSP's successfully gapped: 33
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004312
(1047 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031738.2| dual specificity protein kinase CLK2 isoform 1 ... 293 2e-79
Alignment gi|NP_001156904.1| dual specificity protein kinase CLK2 isoform... 289 3e-78
Alignment gi|NP_031739.3| dual specificity protein kinase CLK3 [Mus muscu... 170 1e-42
Alignment gi|NP_031740.1| dual specificity protein kinase CLK4 [Mus muscu... 142 6e-34
Alignment gi|NP_001036099.1| dual specificity protein kinase CLK1 [Mus mu... 140 2e-33
Alignment gi|NP_997093.2| dual specificity tyrosine-phosphorylation-regul... 91 1e-18
Alignment gi|NP_038858.2| serine/threonine-protein kinase PRP4 homolog [M... 79 6e-15
Alignment gi|NP_001014412.1| dual specificity tyrosine-phosphorylation-re... 77 2e-14
Alignment gi|NP_663483.1| dual specificity tyrosine-phosphorylation-regul... 74 1e-13
Alignment gi|NP_001033046.1| dual specificity tyrosine-phosphorylation-re... 73 4e-13
>ref|NP_031738.2| dual specificity protein kinase CLK2 isoform 1 [Mus musculus].
Length = 499
Score = 293 bits (750), Expect = 2e-79
Identities = 151/247 (61%), Positives = 156/247 (63%)
Frame = +1
Query: 307 MPHPRRYHSSERGSRGSYHEHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 486
MPHPRRYHSSERGSRGSYHEHY
Sbjct: 1 MPHPRRYHSSERGSRGSYHEHYQSRKHKRRRSRSWSSSSDRTRRRRREDSYHVRSRSSYD 60
Query: 487 XXXXXXXXXXXXXCGSYRRNDYSRDRAEAYYDTDYRHSFEYHRENXXXXXXXXXXXXXXX 666
CGSYRRNDYSRDR EAYYDTD+R S+EYHREN
Sbjct: 61 DHSSDRRLYDRRYCGSYRRNDYSRDRGEAYYDTDFRQSYEYHRENSSYRSQRSSRRKHRR 120
Query: 667 XXXXXXXXXXXXXXXXXXXXXXVEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQC 846
VEDDAEGHLIYHVGDWLQERYEI+STLGEGTFGRVVQC
Sbjct: 121 RRRRSRTFSRSSSHSSRRAKS-VEDDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQC 179
Query: 847 VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMC 1026
VDHRRGG +VALKIIKNVEKYKEAARLEINVLEKI+EKDPDNKNLCVQMFDWFDYHGHMC
Sbjct: 180 VDHRRGGTQVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMC 239
Query: 1027 ISFELLG 1047
ISFELLG
Sbjct: 240 ISFELLG 246
>ref|NP_001156904.1| dual specificity protein kinase CLK2 isoform 2 [Mus musculus].
Length = 498
Score = 289 bits (739), Expect = 3e-78
Identities = 151/247 (61%), Positives = 156/247 (63%)
Frame = +1
Query: 307 MPHPRRYHSSERGSRGSYHEHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 486
MPHPRRYHSSERGSRGSYHEHY
Sbjct: 1 MPHPRRYHSSERGSRGSYHEHYQSRKHKRRRSRSWSSSSDRTRRRRREDSYHVRSRSYDD 60
Query: 487 XXXXXXXXXXXXXCGSYRRNDYSRDRAEAYYDTDYRHSFEYHRENXXXXXXXXXXXXXXX 666
CGSYRRNDYSRDR EAYYDTD+R S+EYHREN
Sbjct: 61 HSSDRRLYDRRY-CGSYRRNDYSRDRGEAYYDTDFRQSYEYHRENSSYRSQRSSRRKHRR 119
Query: 667 XXXXXXXXXXXXXXXXXXXXXXVEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQC 846
VEDDAEGHLIYHVGDWLQERYEI+STLGEGTFGRVVQC
Sbjct: 120 RRRRSRTFSRSSSHSSRRAKS-VEDDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQC 178
Query: 847 VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMC 1026
VDHRRGG +VALKIIKNVEKYKEAARLEINVLEKI+EKDPDNKNLCVQMFDWFDYHGHMC
Sbjct: 179 VDHRRGGTQVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMC 238
Query: 1027 ISFELLG 1047
ISFELLG
Sbjct: 239 ISFELLG 245
>ref|NP_031739.3| dual specificity protein kinase CLK3 [Mus musculus].
Length = 638
Score = 170 bits (431), Expect = 1e-42
Identities = 77/105 (73%), Positives = 92/105 (87%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
VEDD EGHL+ +GDWLQERYEI+ LGEGTFG+VV+C+DH RG ++VALKII+NV KY+
Sbjct: 284 VEDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYR 343
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAARLEINVL+KI EKD +NK LCV M DWF++HGHMCI+FELLG
Sbjct: 344 EAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 388
>ref|NP_031740.1| dual specificity protein kinase CLK4 [Mus musculus].
Length = 481
Score = 142 bits (357), Expect = 6e-34
Identities = 64/105 (60%), Positives = 81/105 (77%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
+EDD EGHLI GD L+ RYEI+ TLGEG FG+VV+C+DH G VA+KI+KNV +Y+
Sbjct: 139 IEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGLHVAVKIVKNVGRYR 198
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAAR EI VLE ++ DP++ CVQM +WFD+HGH+CI FELLG
Sbjct: 199 EAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLG 243
>ref|NP_001036099.1| dual specificity protein kinase CLK1 [Mus musculus].
Length = 483
Score = 140 bits (352), Expect = 2e-33
Identities = 64/105 (60%), Positives = 81/105 (77%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
VEDD EGHLI GD L RYEI+ TLGEG FG+VV+C+DH+ GG RVA+KI+KNV++Y
Sbjct: 140 VEDDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKVGGRRVAVKIVKNVDRYC 199
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAA+ EI VLE ++ DP + CVQM +WF++ GH+CI FELLG
Sbjct: 200 EAAQSEIQVLEHLNTTDPHSTFRCVQMLEWFEHRGHICIVFELLG 244
>ref|NP_997093.2| dual specificity tyrosine-phosphorylation-regulated kinase 4 [Mus
musculus].
Length = 632
Score = 90.9 bits (224), Expect = 1e-18
Identities = 42/103 (40%), Positives = 67/103 (65%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD G + + D + RYE++ +G+G+FG+V +C+DH+ VALKII+N +++
Sbjct: 201 DDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNEL-VALKIIRNKKRFHHQ 259
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
A +E+ +LE + KD DN + V M D+F + H+CI+FELLG
Sbjct: 260 ALVELKILEALRRKDKDNNHNVVHMKDFFYFRNHLCITFELLG 302
>ref|NP_038858.2| serine/threonine-protein kinase PRP4 homolog [Mus musculus].
Length = 1007
Score = 79.0 bits (193), Expect = 6e-15
Identities = 37/101 (36%), Positives = 62/101 (61%)
Frame = +1
Query: 742 DAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAA 921
DAEG+ ++G+ L +RY + G+G F VV+ D+ R VA+KII+N E ++
Sbjct: 670 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTG 729
Query: 922 RLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
E+ L+K+++ DPD+K C+++F F + H+C+ FE L
Sbjct: 730 LKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPL 770
>ref|NP_001014412.1| dual specificity tyrosine-phosphorylation-regulated kinase 2 [Mus
musculus].
Length = 599
Score = 77.0 bits (188), Expect = 2e-14
Identities = 36/102 (35%), Positives = 63/102 (61%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD +G + D + RYE++ +G+G+FG+VV+ DH+ VALK+++N +++
Sbjct: 202 DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVH-QHVALKMVRNEKRFHRQ 260
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
A EI +LE + ++D DN + M + F + H+C++FELL
Sbjct: 261 AAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELL 302
>ref|NP_663483.1| dual specificity tyrosine-phosphorylation-regulated kinase 3 [Mus
musculus].
Length = 586
Score = 74.3 bits (181), Expect = 1e-13
Identities = 36/102 (35%), Positives = 62/102 (60%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DDA+G I+ D L RYE++ +G+G+FG+V + DH+ VALK+++N +++
Sbjct: 190 DDADGAYIHVPRDHLAYRYEVLKIIGKGSFGQVARVYDHKLR-QYVALKMVRNEKRFHRQ 248
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
A EI +LE + ++D + M + F + H+C++FELL
Sbjct: 249 AAEEIRILEHLKKQDKTGSMNVIHMLESFTFRNHVCMAFELL 290
>ref|NP_001033046.1| dual specificity tyrosine-phosphorylation-regulated kinase 1B isoform
b [Mus musculus].
Length = 629
Score = 72.8 bits (177), Expect = 4e-13
Identities = 39/103 (37%), Positives = 64/103 (62%)
Frame = +1
Query: 736 EDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKE 915
+DD +++ WL ERYEI S +G+G+FG+VV+ DH+ VA+KIIKN + +
Sbjct: 93 DDDNHDYIVRSGERWL-ERYEIDSLIGKGSFGQVVKAYDHQTQEL-VAIKIIKNKKAFLN 150
Query: 916 AARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
A++E+ +LE +++ D + K V + F + H+C+ FELL
Sbjct: 151 QAQIELRLLELMNQHDTEMKYYIVHLKRHFMFRNHLCLVFELL 193
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,513,353
Number of extensions: 756774
Number of successful extensions: 6145
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 5840
Number of HSP's successfully gapped: 25
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004312
(1047 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929146.3| PREDICTED: dual specificity protein kinase C... 304 6e-83
Alignment gi|XP_003125763.1| PREDICTED: dual specificity protein kinase C... 256 2e-68
Alignment gi|XP_001927959.2| PREDICTED: dual specificity protein kinase C... 170 1e-42
Alignment gi|NP_001116571.1| dual specificity protein kinase CLK1 [Sus sc... 144 6e-35
Alignment gi|XP_003123698.1| PREDICTED: dual specificity protein kinase C... 142 4e-34
Alignment gi|XP_003126609.2| PREDICTED: dual specificity tyrosine-phospho... 89 3e-18
Alignment gi|XP_003356557.1| PREDICTED: serine/threonine-protein kinase P... 79 4e-15
Alignment gi|XP_003126809.1| PREDICTED: dual specificity tyrosine-phospho... 77 2e-14
Alignment gi|XP_003126810.2| PREDICTED: dual specificity tyrosine-phospho... 74 1e-13
Alignment gi|XP_003361226.1| PREDICTED: dual specificity tyrosine-phospho... 67 2e-11
>ref|XP_001929146.3| PREDICTED: dual specificity protein kinase CLK2 [Sus scrofa].
Length = 499
Score = 304 bits (778), Expect = 6e-83
Identities = 158/247 (63%), Positives = 159/247 (64%)
Frame = +1
Query: 307 MPHPRRYHSSERGSRGSYHEHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 486
MPHPRRYHSSERGSRGSYHEHY
Sbjct: 1 MPHPRRYHSSERGSRGSYHEHYRSRKHKRRRSRSWSSSSDRTRRRRREDSYHVRSRSSYD 60
Query: 487 XXXXXXXXXXXXXCGSYRRNDYSRDRAEAYYDTDYRHSFEYHRENXXXXXXXXXXXXXXX 666
CGSYRRNDYSRDRAEAYYDTDYRHSFEYHREN
Sbjct: 61 DRSSDRRAYDRRYCGSYRRNDYSRDRAEAYYDTDYRHSFEYHRENSSYRSQHSSRRKHRR 120
Query: 667 XXXXXXXXXXXXXXXXXXXXXXVEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQC 846
VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQC
Sbjct: 121 RRRRSRTFSRSSSHSSRRAKS-VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQC 179
Query: 847 VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMC 1026
VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKI+EKDPDNKNLCVQMFDWFDYHGHMC
Sbjct: 180 VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMC 239
Query: 1027 ISFELLG 1047
ISFELLG
Sbjct: 240 ISFELLG 246
>ref|XP_003125763.1| PREDICTED: dual specificity protein kinase CLK2-like [Sus scrofa].
Length = 490
Score = 256 bits (653), Expect = 2e-68
Identities = 140/247 (56%), Positives = 143/247 (57%)
Frame = +1
Query: 307 MPHPRRYHSSERGSRGSYHEHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 486
MPHPRRYHSSERGSRGSYHEHY
Sbjct: 1 MPHPRRYHSSERGSRGSYHEHYRSRKHKRRRSRSWSSSSDRTRRRRREDSYHVRSRSSYD 60
Query: 487 XXXXXXXXXXXXXCGSYRRNDYSRDRAEAYYDTDYRHSFEYHRENXXXXXXXXXXXXXXX 666
CGSYRRNDYSRDRAEAYYDTDYRHSFEYHREN
Sbjct: 61 DRSSDRRAYDRRYCGSYRRNDYSRDRAEAYYDTDYRHSFEYHRENSSYRSQHSSRRKHRR 120
Query: 667 XXXXXXXXXXXXXXXXXXXXXXVEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQC 846
+ G H L + EIISTLGEGTFGRVVQC
Sbjct: 121 RRRRSRTFSRSSSVSA----------SPGPSSPHSSSALWDPDEIISTLGEGTFGRVVQC 170
Query: 847 VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMC 1026
VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKI+EKDPDNKNLCVQMFDWFDYHGHMC
Sbjct: 171 VDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMC 230
Query: 1027 ISFELLG 1047
ISFELLG
Sbjct: 231 ISFELLG 237
>ref|XP_001927959.2| PREDICTED: dual specificity protein kinase CLK3 isoform 1 [Sus
scrofa].
Length = 417
Score = 170 bits (431), Expect = 1e-42
Identities = 77/105 (73%), Positives = 92/105 (87%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
VEDD EGHL+ +GDWLQERYEI+ LGEGTFG+VV+C+DH RG ++VALKII+NV KY+
Sbjct: 63 VEDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYR 122
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAARLEINVL+KI EKD +NK LCV M DWF++HGHMCI+FELLG
Sbjct: 123 EAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 167
>ref|NP_001116571.1| dual specificity protein kinase CLK1 [Sus scrofa].
Length = 484
Score = 144 bits (364), Expect = 6e-35
Identities = 72/169 (42%), Positives = 93/169 (55%)
Frame = +1
Query: 541 RNDYSRDRAEAYYDTDYRHSFEYHRENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720
RNDY++ + DY ++ H
Sbjct: 78 RNDYNQGCEPGHRHRDYESRYQNHSSKSSGRSGRSSYKSKYRIHHSTSHHRSHGKSHRRK 137
Query: 721 XXXXVEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNV 900
VEDD EGHLI GD L RYEI+ TLGEG FG+VV+C+DH+ GG VA+KI+KNV
Sbjct: 138 RTRSVEDDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV 197
Query: 901 EKYKEAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
++Y EAAR EI VLE ++ DP + CVQM +WF++HGH+CI FELLG
Sbjct: 198 DRYCEAARSEIQVLEHLNTTDPSSTFRCVQMLEWFEHHGHICIVFELLG 246
>ref|XP_003123698.1| PREDICTED: dual specificity protein kinase CLK4 [Sus scrofa].
Length = 481
Score = 142 bits (357), Expect = 4e-34
Identities = 64/105 (60%), Positives = 81/105 (77%)
Frame = +1
Query: 733 VEDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYK 912
+EDD EGHLI GD L+ RYEI+ TLGEG FG+VV+C+DH G VA+KI+KNV +Y+
Sbjct: 139 IEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNVGRYR 198
Query: 913 EAARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
EAAR EI VLE ++ DP++ CVQM +WFD+HGH+CI FELLG
Sbjct: 199 EAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLG 243
>ref|XP_003126609.2| PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase
4-like [Sus scrofa].
Length = 550
Score = 89.4 bits (220), Expect = 3e-18
Identities = 42/103 (40%), Positives = 66/103 (64%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD G + + D + RYE++ +G+G+FG+V +C+DH+ VALKII+N +++
Sbjct: 115 DDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNEL-VALKIIRNKKRFHHQ 173
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELLG 1047
A +E+ +LE + KD DN V M D+F + H+CI+FELLG
Sbjct: 174 ALVELKILEALRRKDKDNTYNVVHMKDFFYFRNHLCITFELLG 216
>ref|XP_003356557.1| PREDICTED: serine/threonine-protein kinase PRP4 homolog [Sus scrofa].
Length = 369
Score = 79.0 bits (193), Expect = 4e-15
Identities = 37/101 (36%), Positives = 62/101 (61%)
Frame = +1
Query: 742 DAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAA 921
DAEG+ ++G+ L +RY + G+G F VV+ D+ R VA+KII+N E ++
Sbjct: 32 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTG 91
Query: 922 RLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
E+ L+K+++ DPD+K C+++F F + H+C+ FE L
Sbjct: 92 LKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPL 132
>ref|XP_003126809.1| PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase
2-like [Sus scrofa].
Length = 601
Score = 77.0 bits (188), Expect = 2e-14
Identities = 36/102 (35%), Positives = 63/102 (61%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD +G + D + RYE++ +G+G+FG+VV+ DH+ VALK+++N +++
Sbjct: 204 DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVH-QHVALKMVRNEKRFHRQ 262
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
A EI +LE + ++D DN + M + F + H+C++FELL
Sbjct: 263 AAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELL 304
>ref|XP_003126810.2| PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase
2-like [Sus scrofa].
Length = 570
Score = 73.9 bits (180), Expect = 1e-13
Identities = 35/102 (34%), Positives = 62/102 (60%)
Frame = +1
Query: 739 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 918
DD +G + D + RYE++ + +G+FG+VV+ DH+ VALK+++N +++
Sbjct: 173 DDDQGSYVQVPHDHVAYRYEVLKVIEKGSFGQVVKAYDHKVH-QHVALKMVRNEKRFHRQ 231
Query: 919 ARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
A EI +LE + ++D DN + M + F + H+C++FELL
Sbjct: 232 AAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELL 273
>ref|XP_003361226.1| PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase
1A-like [Sus scrofa].
Length = 783
Score = 67.0 bits (162), Expect = 2e-11
Identities = 36/103 (34%), Positives = 64/103 (62%)
Frame = +1
Query: 736 EDDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKE 915
+DD +++ + W+ +RYEI S +G+G+FG+VV+ D R VA+KIIKN + +
Sbjct: 161 DDDNYDYIVKNGEKWM-DRYEIDSLIGKGSFGQVVKAYD-RVEQEWVAIKIIKNKKAFLN 218
Query: 916 AARLEINVLEKIHEKDPDNKNLCVQMFDWFDYHGHMCISFELL 1044
A++E+ +LE +++ D + K V + F + H+C+ FE+L
Sbjct: 219 QAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEML 261
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,544,096
Number of extensions: 598409
Number of successful extensions: 5440
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 5165
Number of HSP's successfully gapped: 25
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004312
(1047 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 458 e-126
>Sscrofa_Chr04
|| Length = 143465943
Score = 458 bits (231), Expect = e-126
Identities = 231/231 (100%)
Strand = Plus / Plus
Query: 475 agcagctatgatgatcgttcatcggaccggagggcgtacgaccggcggtactgtggcagc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103346199 agcagctatgatgatcgttcatcggaccggagggcgtacgaccggcggtactgtggcagc 103346258
Query: 535 tacaggcggaacgactacagccgggatcgggccgaagcctactatgacacagactaccgg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103346259 tacaggcggaacgactacagccgggatcgggccgaagcctactatgacacagactaccgg 103346318
Query: 595 cactcctttgagtatcaccgggagaacagcagttaccgcagccagcacagcagccggagg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103346319 cactcctttgagtatcaccgggagaacagcagttaccgcagccagcacagcagccggagg 103346378
Query: 655 aagcacagacggcggaggcggcgcagccggacattcagccgctcatcttcg 705
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103346379 aagcacagacggcggaggcggcgcagccggacattcagccgctcatcttcg 103346429
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 306 gatgcctcatcctcgaaggtaccattcttcagagcgaggcagccgggggagttaccatga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103344397 gatgcctcatcctcgaaggtaccattcttcagagcgaggcagccgggggagttaccatga 103344456
Query: 366 acactatcggagccgaaagcataagagacggagaagccgctcctggtcaagcagcagtga 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103344457 acactatcggagccgaaagcataagagacggagaagccgctcctggtcaagcagcagtga 103344516
Query: 426 ccggacacggcggcgccgacgggaagacagctaccacgtccgttcccggag 476
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103344517 ccggacacggcggcgccgacgggaagacagctaccacgtccgttcccggag 103344567
Score = 222 bits (112), Expect = 3e-55
Identities = 118/120 (98%)
Strand = Plus / Plus
Query: 858 caggggtggggcccgagttgccctgaagatcattaaaaatgtggaaaagtacaaggaagc 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103347802 caggggtggggcccgagttgccctgaagatcattaaaaatgtggaaaagtacaaggaagc 103347861
Query: 918 agctcgacttgagatcaatgtgctggagaaaattcacgagaaggatcctgacaacaagaa 977
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 103347862 agctcgacttgagatcaatgtgctggagaaaatcaacgagaaggatcctgacaacaagaa 103347921
Score = 214 bits (108), Expect = 7e-53
Identities = 122/129 (94%)
Strand = Plus / Plus
Query: 178 gtccagggtctcgggttnnnnnnntggagccgcacttcgtcgccgcgggggtgccgggac 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 103342464 gtccagggtctcgggttgggggggtggagccgcacttcgtcgccgcgggggtgccgggac 103342523
Query: 238 tccggccgcagtgccgccgccatcacggacttcctgtgggacaagcgcacgggcctcgcc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103342524 tccggccgcagtgccgccgccatcacggacttcctgtgggacaagcgcacgggcctcgcc 103342583
Query: 298 gccagaacg 306
|||||||||
Sbjct: 103342584 gccagaacg 103342592
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 705 gcagcacagcagccggagagccaagagtgtagaggacgacgctgagggccacctcatcta 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103347120 gcagcacagcagccggagagccaagagtgtagaggacgacgctgagggccacctcatcta 103347179
Query: 765 ccacgtcggggactggctacaagagcgat 793
|||||||||||||||||||||||||||||
Sbjct: 103347180 ccacgtcggggactggctacaagagcgat 103347208
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gtgcgtacgtgctcgctcgcggtggcggcggcggcggatcggggaggccagagccggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103342287 gtgcgtacgtgctcgctcgcggtggcggcggcggcggatcggggaggccagagccggaga 103342346
Query: 61 ccgagctgggatcgggccc 79
|||||||||||||||||||
Sbjct: 103342347 ccgagctgggatcgggccc 103342365
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 978 cctctgtgtccagatgtttgactggtttgactaccatggccacatgtgtatctcctttga 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103348747 cctctgtgtccagatgtttgactggtttgactaccatggccacatgtgtatctcctttga 103348806
Query: 1038 gcttctgggc 1047
||||||||||
Sbjct: 103348807 gcttctgggc 103348816
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 794 atgaaatcataagcaccttgggagaggggaccttcggccgagttgtgcagtgtgtcgacc 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103347563 atgaaatcataagcaccttgggagaggggaccttcggccgagttgtgcagtgtgtcgacc 103347622
Query: 854 atcgcagg 861
||||||||
Sbjct: 103347623 atcgcagg 103347630
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,626,582
Number of extensions: 257
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 8
Length of query: 1047
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1026
Effective length of database: 2,808,413,156
Effective search space: 2881431898056
Effective search space used: 2881431898056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)