Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004326
(940 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092419.1| 2-hydroxyacyl-CoA lyase 1 [Bos taurus]. 429 e-120
Alignment gi|NP_001015535.1| acetolactate synthase-like protein [Bos taur... 102 6e-22
>ref|NP_001092419.1| 2-hydroxyacyl-CoA lyase 1 [Bos taurus].
Length = 581
Score = 429 bits (1104), Expect = e-120
Identities = 218/265 (82%), Positives = 238/265 (89%), Gaps = 2/265 (0%)
Frame = +2
Query: 125 MSGNNLAEGSNPSEAQMSGAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGM 304
MS +NLA S+ E Q+SGA VIAQ+LKTQ+VNYMFGIVGIPVTEIALA Q++GIRY+GM
Sbjct: 1 MSESNLAALSDGLEGQVSGARVIAQALKTQDVNYMFGIVGIPVTEIALAAQEVGIRYIGM 60
Query: 305 RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQE 484
RNEQAACYAASAVGYLTGRPGVCLVVSGPGL+H+LGGMANANMNCWPLIVIGGSSERSQE
Sbjct: 61 RNEQAACYAASAVGYLTGRPGVCLVVSGPGLVHSLGGMANANMNCWPLIVIGGSSERSQE 120
Query: 485 TMGAFQEFPQVEACRLYSKFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPADFVNL 664
TMGAFQEFPQVEACRLYSKFSARP SIEAIPS+IEKAVRSSIYGRPGACYVDIPADFV+L
Sbjct: 121 TMGAFQEFPQVEACRLYSKFSARPSSIEAIPSIIEKAVRSSIYGRPGACYVDIPADFVSL 180
Query: 665 QVNVNSIKYMECCLPPPICMAETSAVYVAASLLRNAKQPLSIIGKGAAYAHAEHSIRKLV 844
QVNV+S+KY+ECC+PPPI MAETSAV +AAS++RNAKQPL IIGKGAAYAHAE SIRKLV
Sbjct: 181 QVNVSSVKYVECCMPPPISMAETSAVRMAASVIRNAKQPLVIIGKGAAYAHAEESIRKLV 240
Query: 845 DHANYHFCP-PHGKXVIL-TPSNCV 913
+ F P P GK VI NCV
Sbjct: 241 EQCKLPFLPTPMGKGVIRDNHPNCV 265
>ref|NP_001015535.1| acetolactate synthase-like protein [Bos taurus].
Length = 639
Score = 102 bits (253), Expect = 6e-22
Identities = 64/194 (32%), Positives = 99/194 (51%)
Frame = +2
Query: 179 GAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGMRNEQAACYAASAVGYLTG 358
G E +A LK V ++F +VG ++ + +A +KLGIR V R+E A +AA AV LTG
Sbjct: 61 GGENVAAVLKAHGVRFLFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAVARLTG 120
Query: 359 RPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQETMGAFQEFPQVEACRLYS 538
GV V +GPGL + + + NA + P++++GG++ + GA Q Q+ R
Sbjct: 121 TVGVAAVTAGPGLTNTVTAVKNAQIAQSPVLLLGGAASTLLQNRGALQAIDQIALFRPLC 180
Query: 539 KFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPADFVNLQVNVNSIKYMECCLPPPI 718
KF A + I + A+ ++ G PG +V++P D + V K M PP
Sbjct: 181 KFCASVRRVRDIIPTLRAAMAAAQSGTPGPVFVELPLDVLYPYFMVQ--KEMVPAKPPKG 238
Query: 719 CMAETSAVYVAASL 760
M+ Y+A SL
Sbjct: 239 LMSRAVHWYLANSL 252
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,244,532
Number of extensions: 1164631
Number of successful extensions: 3058
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3056
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,306,398
Effective search space: 3018649978
Effective search space used: 3018649978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004326
(940 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534256.2| PREDICTED: similar to 2-hydroxyphytanoyl-CoA ly... 423 e-118
Alignment gi|XP_533890.2| PREDICTED: similar to ilvB (bacterial acetolact... 97 2e-20
>ref|XP_534256.2| PREDICTED: similar to 2-hydroxyphytanoyl-CoA lyase (2-HPCL) [Canis
familiaris].
Length = 667
Score = 423 bits (1088), Expect = e-118
Identities = 226/310 (72%), Positives = 250/310 (80%), Gaps = 7/310 (2%)
Frame = +2
Query: 5 GLPPPQRGGSTVGVFEPALA----W*LRFSLSSTAVGPRTLR-WKMSGNNLAEGSNPSEA 169
GLPPP + EP W R S+ ++ P + R WKM+ + AE S+ E
Sbjct: 46 GLPPPDALPRRME--EPGKVHGSDW--RRSVFTSPPHPASRRTWKMAESAFAERSDGGEE 101
Query: 170 QMSGAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGMRNEQAACYAASAVGY 349
++SGAEVIAQ+LKTQ+V Y+FGIVGIPVTEIA+A QKLGIRYVGMRNEQAACYAASAVGY
Sbjct: 102 KVSGAEVIAQALKTQDVEYVFGIVGIPVTEIAVAAQKLGIRYVGMRNEQAACYAASAVGY 161
Query: 350 LTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQETMGAFQEFPQVEACR 529
LTGRPGVCLVVSGPGLIHALGGMANAN+NCWPLIVIGGSSER QETMGAFQEFPQVEACR
Sbjct: 162 LTGRPGVCLVVSGPGLIHALGGMANANVNCWPLIVIGGSSERRQETMGAFQEFPQVEACR 221
Query: 530 LYSKFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPADFVNLQVNVNSIKYMECCLP 709
LY KFSARP SIE IPS+IEKAVRSSIYGRPG CYVDIPADFVN QVNVNSIKY+ECCLP
Sbjct: 222 LYCKFSARPSSIETIPSIIEKAVRSSIYGRPGPCYVDIPADFVNFQVNVNSIKYVECCLP 281
Query: 710 PPICMAETSAVYVAASLLRNAKQPLSIIGKGAAYAHAEHSIRKLVDHANYHFCP-PHGKX 886
PP+ MAETSAVY+AAS+LRNAK+PL IIGKGAAY+ AE +IRKLV F P P GK
Sbjct: 282 PPVSMAETSAVYMAASVLRNAKRPLLIIGKGAAYSRAEEAIRKLVGQCKLPFLPTPMGKG 341
Query: 887 VIL-TPSNCV 913
V+ NCV
Sbjct: 342 VVPDNHPNCV 351
>ref|XP_533890.2| PREDICTED: similar to ilvB (bacterial acetolactate synthase)-like
isoform 1 [Canis familiaris].
Length = 759
Score = 97.4 bits (241), Expect = 2e-20
Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 3/204 (1%)
Frame = +2
Query: 179 GAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGMRNEQAACYAASAVGYLTG 358
G E +A L+ V ++F +VG ++ + +A +K+GIR V R+E A +AA AV LTG
Sbjct: 181 GGENVAAVLRAHGVRFLFTLVGGHISPLLVACEKIGIRVVDTRHEVTAVFAADAVARLTG 240
Query: 359 RPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQETMGAFQEFPQVEACRLYS 538
GV V +GPGL + + + NA + P++++GG++ + GA Q Q+ R
Sbjct: 241 TVGVAAVTAGPGLTNTVTAVKNAQIAQSPVLLLGGAASTLLQNRGALQAIDQMSLFRPLC 300
Query: 539 KFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPADFVNLQVNVNSIKYMECCLPPPI 718
KF A + I + A+ ++ G PG +V++P D + V K M PP
Sbjct: 301 KFCASVRRVRDIVPTLRLAMAAAQSGTPGPVFVELPIDVLYPYFMVQ--KEMVPTKPPKG 358
Query: 719 CMAETSAVYV---AASLLRNAKQP 781
M + Y+ A+L A +P
Sbjct: 359 LMGRVVSWYLENHLANLFAGAWEP 382
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,820,527
Number of extensions: 1191141
Number of successful extensions: 3184
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3183
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 210
Effective length of database: 15,440,896
Effective search space: 3242588160
Effective search space used: 3242588160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004326
(940 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036392.2| 2-hydroxyacyl-CoA lyase 1 [Homo sapiens]. 409 e-114
Alignment gi|NP_006835.2| acetolactate synthase-like protein [Homo sapien... 95 8e-20
>ref|NP_036392.2| 2-hydroxyacyl-CoA lyase 1 [Homo sapiens].
Length = 578
Score = 409 bits (1051), Expect = e-114
Identities = 208/257 (80%), Positives = 228/257 (88%), Gaps = 1/257 (0%)
Frame = +2
Query: 125 MSGNNLAEGSNPSEAQMSGAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGM 304
M +N AE S E Q+SGA+VIAQ+LKTQ+V Y+FGIVGIPVTEIA+A Q+LGI+Y+GM
Sbjct: 1 MPDSNFAERS---EEQVSGAKVIAQALKTQDVEYIFGIVGIPVTEIAIAAQQLGIKYIGM 57
Query: 305 RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQE 484
RNEQAACYAASA+GYLT RPGVCLVVSGPGLIHALGGMANANMNCWPL+VIGGSSER+QE
Sbjct: 58 RNEQAACYAASAIGYLTSRPGVCLVVSGPGLIHALGGMANANMNCWPLLVIGGSSERNQE 117
Query: 485 TMGAFQEFPQVEACRLYSKFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPADFVNL 664
TMGAFQEFPQVEACRLY+KFSARP SIEAIP VIEKAVRSSIYGRPGACYVDIPADFVNL
Sbjct: 118 TMGAFQEFPQVEACRLYTKFSARPSSIEAIPFVIEKAVRSSIYGRPGACYVDIPADFVNL 177
Query: 665 QVNVNSIKYMECCLPPPICMAETSAVYVAASLLRNAKQPLSIIGKGAAYAHAEHSIRKLV 844
QVNVNSIKYME C+ PPI MAETSAV AAS++RNAKQPL IIGKGAAYAHAE SI+KLV
Sbjct: 178 QVNVNSIKYMERCMSPPISMAETSAVCTAASVIRNAKQPLLIIGKGAAYAHAEESIKKLV 237
Query: 845 DHANYHFCP-PHGKXVI 892
+ F P P GK V+
Sbjct: 238 EQYKLPFLPTPMGKGVV 254
>ref|NP_006835.2| acetolactate synthase-like protein [Homo sapiens].
Length = 632
Score = 95.1 bits (235), Expect = 8e-20
Identities = 51/158 (32%), Positives = 85/158 (53%)
Frame = +2
Query: 179 GAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGMRNEQAACYAASAVGYLTG 358
G E +A L+ V ++F +VG ++ + +A +KLGIR V R+E A +AA A+ L+G
Sbjct: 54 GGENVAAVLRAHGVRFIFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAMARLSG 113
Query: 359 RPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQETMGAFQEFPQVEACRLYS 538
GV V +GPGL + + + NA M P++++GG++ + GA Q Q+ R
Sbjct: 114 TVGVAAVTAGPGLTNTVTAVKNAQMAQSPILLLGGAASTLLQNRGALQAVDQLSLFRPLC 173
Query: 539 KFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPAD 652
KF + I + A+ ++ G PG +V++P D
Sbjct: 174 KFCVSVRRVRDIVPTLRAAMAAAQSGTPGPVFVELPVD 211
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,169,405
Number of extensions: 1180581
Number of successful extensions: 3061
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3060
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,934,836
Effective search space: 3151250396
Effective search space used: 3151250396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004326
(940 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064359.2| 2-hydroxyacyl-CoA lyase 1 [Mus musculus]. 416 e-116
Alignment gi|NP_776112.1| acetolactate synthase-like protein [Mus musculu... 100 2e-21
>ref|NP_064359.2| 2-hydroxyacyl-CoA lyase 1 [Mus musculus].
Length = 581
Score = 416 bits (1069), Expect = e-116
Identities = 209/265 (78%), Positives = 232/265 (87%), Gaps = 2/265 (0%)
Frame = +2
Query: 125 MSGNNLAEGSNPSEAQMSGAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGM 304
M +N AEGS+ SE Q+SGA+VIAQ+LKTQ+V YMFG+VGIPVTEIALA Q+LGI+Y+GM
Sbjct: 1 MPESNSAEGSDRSEEQVSGAKVIAQALKTQDVEYMFGVVGIPVTEIALAAQELGIKYIGM 60
Query: 305 RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQE 484
RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSER+QE
Sbjct: 61 RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERNQE 120
Query: 485 TMGAFQEFPQVEACRLYSKFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPADFVNL 664
MGAFQEFPQVEACRLY+KFSARP +IE IP +IEKAVRSSIYGRPGACY+DIPADFV L
Sbjct: 121 AMGAFQEFPQVEACRLYTKFSARPSTIELIPFIIEKAVRSSIYGRPGACYIDIPADFVTL 180
Query: 665 QVNVNSIKYMECCLPPPICMAETSAVYVAASLLRNAKQPLSIIGKGAAYAHAEHSIRKLV 844
Q NV SIKY ECC+PPP+ MAETSAV AAS+LR+AKQPL IIGKGAAY+HAE SIRKLV
Sbjct: 181 QANVTSIKYKECCMPPPVSMAETSAVCAAASVLRDAKQPLLIIGKGAAYSHAEDSIRKLV 240
Query: 845 DHANYHFCP-PHGKXVIL-TPSNCV 913
+ + F P P GK V+ NCV
Sbjct: 241 EQCSLPFLPTPMGKGVVPDNHPNCV 265
>ref|NP_776112.1| acetolactate synthase-like protein [Mus musculus].
Length = 632
Score = 100 bits (248), Expect = 2e-21
Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 32/241 (13%)
Frame = +2
Query: 179 GAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGMRNEQAACYAASAVGYLTG 358
G E +A L+ V ++F +VG ++ + +A +KLGIR V R+E A +AA AV LTG
Sbjct: 54 GGESVAAVLRAHGVRFVFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAVARLTG 113
Query: 359 RPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQETMGAFQEFPQVEACRLYS 538
GV V +GPGL + + + NA + P++++GG++ + GA Q Q+ R
Sbjct: 114 TVGVAAVTAGPGLTNTVTAVKNAQVAQSPVLLLGGAASTLLQKRGALQAIDQMSLFRPLC 173
Query: 539 KFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPADFV----------------NLQV 670
KF A + I + A+ ++ G PG +V++P D + N +
Sbjct: 174 KFCASVRRVRDIVPTLRTAIAAAQSGTPGPVFVELPLDVLYPYFMVEKEMIPTKLPNSLM 233
Query: 671 NVNSIKYMECC----------------LPPPICMAETSAVYVAASLLRNAKQPLSIIGKG 802
+ Y++ C LP I A V +L AK+PL ++G
Sbjct: 234 GRVVVWYLQNCLANLFVGAWEPRPEGPLPLDIPQASPQQVQRCVEILSRAKRPLLVLGSQ 293
Query: 803 A 805
A
Sbjct: 294 A 294
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,993,896
Number of extensions: 996190
Number of successful extensions: 2644
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2641
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 212
Effective length of database: 12,583,923
Effective search space: 2667791676
Effective search space used: 2667791676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004326
(940 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193383.1| 2-hydroxyacyl-CoA lyase 1 [Sus scrofa]. 485 e-137
Alignment gi|XP_003123501.2| PREDICTED: acetolactate synthase-like protei... 97 1e-20
>ref|NP_001193383.1| 2-hydroxyacyl-CoA lyase 1 [Sus scrofa].
Length = 571
Score = 485 bits (1249), Expect = e-137
Identities = 249/265 (93%), Positives = 250/265 (94%), Gaps = 2/265 (0%)
Frame = +2
Query: 125 MSGNNLAEGSNPSEAQMSGAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGM 304
MSGNNLAEGSNPSEAQMSGAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGM
Sbjct: 1 MSGNNLAEGSNPSEAQMSGAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGM 60
Query: 305 RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQE 484
RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQE
Sbjct: 61 RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQE 120
Query: 485 TMGAFQEFPQVEACRLYSKFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPADFVNL 664
TMGAFQEFPQVEACRLYSKFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPADFVNL
Sbjct: 121 TMGAFQEFPQVEACRLYSKFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPADFVNL 180
Query: 665 QVNVNSIKYMECCLPPPICMAETSAVYVAASLLRNAKQPLSIIGKGAAYAHAEHSIRKLV 844
QVNVNSIKYMECCLPPPICMAETSAVYVAASLLRNAKQPL IIGKGAAYAHAEHSIRKLV
Sbjct: 181 QVNVNSIKYMECCLPPPICMAETSAVYVAASLLRNAKQPLLIIGKGAAYAHAEHSIRKLV 240
Query: 845 DHANYHFCP-PHGKXVIL-TPSNCV 913
+ F P P GK VI NCV
Sbjct: 241 EQCKLPFLPTPMGKGVIPDNHPNCV 265
>ref|XP_003123501.2| PREDICTED: acetolactate synthase-like protein [Sus scrofa].
Length = 632
Score = 97.4 bits (241), Expect = 1e-20
Identities = 53/159 (33%), Positives = 86/159 (54%)
Frame = +2
Query: 176 SGAEVIAQSLKTQNVNYMFGIVGIPVTEIALATQKLGIRYVGMRNEQAACYAASAVGYLT 355
+G E +A LK V ++F +VG ++ + +A +KLGIR V R E A +AA AV LT
Sbjct: 53 NGGENVAAVLKAHGVKFLFTLVGGHISPLLVACEKLGIRVVDTRQEVTAVFAADAVARLT 112
Query: 356 GRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERSQETMGAFQEFPQVEACRLY 535
G GV V +GPGL + + + NA + P++++GG++ + GA Q Q+ +
Sbjct: 113 GSVGVAAVTAGPGLTNTVTAVKNAQIAQSPILLLGGAASTLLQNRGALQAVDQMSLFQPL 172
Query: 536 SKFSARPDSIEAIPSVIEKAVRSSIYGRPGACYVDIPAD 652
KF A + I + A+ ++ G PG +V++P D
Sbjct: 173 CKFCASVRRVRDIIPTLRAAMAAAQSGTPGPVFVELPVD 211
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,929,186
Number of extensions: 747808
Number of successful extensions: 2033
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2031
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 214
Effective length of database: 8,879,129
Effective search space: 1900133606
Effective search space used: 1900133606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004326
(940 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 416 e-114
>Sscrofa_Chr13
|| Length = 218635234
Score = 416 bits (210), Expect = e-114
Identities = 213/214 (99%)
Strand = Plus / Plus
Query: 1 gggcgggttgcctcctcctcagaggggcggttccacggttggtgttttcgagcctgcttt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2810399 gggcgggtggcctcctcctcagaggggcggttccacggttggtgttttcgagcctgcttt 2810458
Query: 61 ggcttggtaactccgcttcagcctgtcgtcgactgcggtagggcctcgaactttaaggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2810459 ggcttggtaactccgcttcagcctgtcgtcgactgcggtagggcctcgaactttaaggtg 2810518
Query: 121 gaagatgtccggaaataacttggcagagggcagcaacccaagcgaggcgcagatgtccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2810519 gaagatgtccggaaataacttggcagagggcagcaacccaagcgaggcgcagatgtccgg 2810578
Query: 181 tgcggaagtcatcgcccagtccctgaaaacacag 214
||||||||||||||||||||||||||||||||||
Sbjct: 2810579 tgcggaagtcatcgcccagtccctgaaaacacag 2810612
Score = 416 bits (210), Expect = e-114
Identities = 213/214 (99%)
Strand = Plus / Plus
Query: 1 gggcgggttgcctcctcctcagaggggcggttccacggttggtgttttcgagcctgcttt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2991208 gggcgggtggcctcctcctcagaggggcggttccacggttggtgttttcgagcctgcttt 2991267
Query: 61 ggcttggtaactccgcttcagcctgtcgtcgactgcggtagggcctcgaactttaaggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2991268 ggcttggtaactccgcttcagcctgtcgtcgactgcggtagggcctcgaactttaaggtg 2991327
Query: 121 gaagatgtccggaaataacttggcagagggcagcaacccaagcgaggcgcagatgtccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2991328 gaagatgtccggaaataacttggcagagggcagcaacccaagcgaggcgcagatgtccgg 2991387
Query: 181 tgcggaagtcatcgcccagtccctgaaaacacag 214
||||||||||||||||||||||||||||||||||
Sbjct: 2991388 tgcggaagtcatcgcccagtccctgaaaacacag 2991421
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 212 cagaacgtgaactacatgtttggcatcgtaggcattccagtgactgaaattgcccttgcc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2810782 cagaacgtgaactacatgtttggcatcgtaggcattccagtgactgaaattgcccttgcc 2810841
Query: 272 acccagaaactgggcatcagatacgtcgggatgaggaatgagcaggctg 320
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2810842 acccagaaactgggcatcagatacgtcgggatgaggaatgagcaggctg 2810890
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 216 acgtgaactacatgtttggcatcgtaggcattccagtgactgaaattgcccttgccaccc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2991595 acgtgaactacatgtttggcatcgtaggcattccagtgactgaaattgcccttgccaccc 2991654
Query: 276 agaaactgggcatcagatacgtcgggatgaggaatgagcaggctg 320
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2991655 agaaactgggcatcagatacgtcgggatgaggaatgagcaggctg 2991699
Score = 204 bits (103), Expect = 6e-50
Identities = 112/115 (97%)
Strand = Plus / Plus
Query: 688 gtatatggagtgctgcttgcctcctcctatatgtatggcagaaacctctgcagtatatgt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2823010 gtatatggagtgctgcttgcctcctcctatatgtatggcagaaacctctgcagtatatgt 2823069
Query: 748 ggcagcatctcttcttaggaatgccaaacagcccctttctatcatcggaaaaggt 802
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 2823070 ggcagcatctcttcttaggaatgccaaacagccccttcttatcatcgggaaaggt 2823124
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 591 aggcagtgagaagcagtatttatggtcgtccaggtgcttgctatgttgacatacctgcag 650
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2820350 aggcagtgagaagcagtatttatggccgtccaggtgcttgctatgttgacatacctgcag 2820409
Query: 651 actttgtgaacctccaggtgaatgtgaattctataaagt 689
|||||||||||||||||||||||||||||||||||||||
Sbjct: 2820410 actttgtgaacctccaggtgaatgtgaattctataaagt 2820448
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 359 aggccaggagtttgccttgtcgtttctggtccaggtctcatccatgccttgggtggtatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2815733 aggccaggagtttgccttgtcgtttctggtccaggtctcatccatgccttgggtggtatg 2815792
Query: 419 gcaaatgcaaacatgaactgttgg 442
||||||||||||||||||||||||
Sbjct: 2815793 gcaaatgcaaacatgaactgttgg 2815816
Score = 161 bits (81), Expect = 8e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 513 aggttgaagcttgtagattatatagcaagttctctgcccggccagatagcatagaagcta 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2818850 aggttgaagcttgtagattatatagcaagttctctgcccggccagatagcatagaagcta 2818909
Query: 573 ttccctctgttattgaaaagg 593
|||||||||||||||||||||
Sbjct: 2818910 ttccctctgttattgaaaagg 2818930
Score = 151 bits (76), Expect = 8e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 441 ggcccttgattgtgattggtggttcctctgaaagaagtcaggaaacaatgggagccttcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2817115 ggcccttgattgtgattggtggttcctctgaaagaagtcaggaaacaatgggagccttcc 2817174
Query: 501 aggagtttcctcaggt 516
||||||||||||||||
Sbjct: 2817175 aggagtttcctcaggt 2817190
Score = 133 bits (67), Expect = 2e-28
Identities = 93/98 (94%), Gaps = 3/98 (3%)
Strand = Plus / Plus
Query: 799 aggtgctgcttatgcccatgcagagcacagtatcagaaaactggtgga-ccatgcaaatt 857
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 2834546 aggtgctgcttatgcccatgcagagcacagtatcagaaaactggtggagcaatgcaaatt 2834605
Query: 858 accatttttgccca-ccccatggg-aaggntgttatcc 893
|||||||||||||| ||||||||| |||| ||||||||
Sbjct: 2834606 accatttttgcccacccccatgggaaagggtgttatcc 2834643
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 320 gcttgctatgctgcctctgcagttggatatctgacaggcagg 361
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2814140 gcttgctatgctgcctctgcagttggatatctgacaggcagg 2814181
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,572,050
Number of extensions: 136
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 11
Length of query: 940
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 919
Effective length of database: 2,808,413,156
Effective search space: 2580931690364
Effective search space used: 2580931690364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)