Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004341
(971 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777007.1| nuclear inhibitor of protein phosphatase 1 [Bos... 556 e-158
Alignment gi|XP_002691500.1| PREDICTED: solute carrier family 4 (anion ex... 65 7e-11
Alignment gi|XP_874234.2| PREDICTED: solute carrier family 4 (anion excha... 65 7e-11
Alignment gi|NP_001192853.1| Smad nuclear interacting protein 1 [Bos taur... 55 9e-08
Alignment gi|XP_002686515.1| PREDICTED: Smad nuclear interacting protein-... 55 9e-08
>ref|NP_777007.1| nuclear inhibitor of protein phosphatase 1 [Bos taurus].
Length = 351
Score = 556 bits (1432), Expect = e-158
Identities = 277/317 (87%), Positives = 279/317 (88%)
Frame = +2
Query: 20 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCDF 199
MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKG LFGRNPDLCDF
Sbjct: 1 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF 60
Query: 200 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 379
TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
Sbjct: 61 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 120
Query: 380 TRAYTLREKPQTLPSAVKGDEKMXXXXXXXXXXXXXXXXXXXXXNLTEFNTAHNKRISTL 559
TRAYTLREKPQTLPSAVKGDEKM NLTEFNTAHNKRISTL
Sbjct: 121 TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTL 180
Query: 560 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG 739
TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG
Sbjct: 181 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG 240
Query: 740 PGSLGLEKTGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD 919
PGSL LE++GSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD
Sbjct: 241 PGSLVLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD 300
Query: 920 VDLTPVVPSAVNMKPAP 970
VDLTPVVPSAVNM PAP
Sbjct: 301 VDLTPVVPSAVNMNPAP 317
>ref|XP_002691500.1| PREDICTED: solute carrier family 4 (anion exchanger), member 1,
adaptor protein [Bos taurus].
Length = 740
Score = 65.5 bits (158), Expect = 7e-11
Identities = 45/140 (32%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Frame = +2
Query: 14 RKMAAAANSGSSL--PLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPD 187
R AA + G S P + P W G L+ +KG LFGR P
Sbjct: 82 RPHTAAPSPGCSARAPPYREPPWGGPTTAPYSLETLKGGTILGTRNLKGLSCCLFGRLPS 141
Query: 188 LCDFTIDHQSCSRVHAALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQ 340
CD ++H S SR HA L + H +L DL STHGTFL R+ P
Sbjct: 142 -CDVCLEHPSVSRYHAVLQHRVSGLDAEGDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYC 200
Query: 341 QIPIDSTVSFGASTRAYTLR 400
++ + + FG STR + L+
Sbjct: 201 RVHVGHVLRFGGSTRLFLLQ 220
>ref|XP_874234.2| PREDICTED: solute carrier family 4 (anion exchanger), member 1,
adaptor protein [Bos taurus].
Length = 740
Score = 65.5 bits (158), Expect = 7e-11
Identities = 45/140 (32%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Frame = +2
Query: 14 RKMAAAANSGSSL--PLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPD 187
R AA + G S P + P W G L+ +KG LFGR P
Sbjct: 82 RPHTAAPSPGCSARAPPYREPPWGGPTTAPYSLETLKGGTILGTRNLKGLSCCLFGRLPS 141
Query: 188 LCDFTIDHQSCSRVHAALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQ 340
CD ++H S SR HA L + H +L DL STHGTFL R+ P
Sbjct: 142 -CDVCLEHPSVSRYHAVLQHRVSGLDAEGDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYC 200
Query: 341 QIPIDSTVSFGASTRAYTLR 400
++ + + FG STR + L+
Sbjct: 201 RVHVGHVLRFGGSTRLFLLQ 220
>ref|NP_001192853.1| Smad nuclear interacting protein 1 [Bos taurus].
Length = 399
Score = 55.1 bits (131), Expect = 9e-08
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +2
Query: 167 LFGRNPDLCDFTIDHQSCSRVHAALVYHK-----------HLKRVFLIDLNSTHGTFLGH 313
L GR+ + D IDH SCS+ HA Y + ++IDL S +GTFL +
Sbjct: 285 LLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNN 344
Query: 314 IRLEPHKPQQIPIDSTVSFGASTRAYT-LREKPQTLPSAVKGDE 442
R+EP + ++ + FG S+R Y L E T K DE
Sbjct: 345 KRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEVDRKEDE 388
>ref|XP_002686515.1| PREDICTED: Smad nuclear interacting protein-like [Bos taurus].
Length = 399
Score = 55.1 bits (131), Expect = 9e-08
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +2
Query: 167 LFGRNPDLCDFTIDHQSCSRVHAALVYHK-----------HLKRVFLIDLNSTHGTFLGH 313
L GR+ + D IDH SCS+ HA Y + ++IDL S +GTFL +
Sbjct: 285 LLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNN 344
Query: 314 IRLEPHKPQQIPIDSTVSFGASTRAYT-LREKPQTLPSAVKGDE 442
R+EP + ++ + FG S+R Y L E T K DE
Sbjct: 345 KRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEVDRKEDE 388
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,967,187
Number of extensions: 1171233
Number of successful extensions: 4168
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4159
Number of HSP's successfully gapped: 5
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004341
(971 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544466.2| PREDICTED: similar to protein phosphatase 1 reg... 559 e-159
Alignment gi|XP_865789.1| PREDICTED: similar to protein phosphatase 1 reg... 493 e-139
Alignment gi|XP_850951.1| PREDICTED: similar to solute carrier family 4 (... 62 1e-09
Alignment gi|XP_532916.2| PREDICTED: similar to solute carrier family 4 (... 62 1e-09
Alignment gi|XP_851174.1| PREDICTED: similar to solute carrier family 4 (... 61 1e-09
Alignment gi|XP_548678.2| PREDICTED: similar to solute carrier family 4 (... 61 1e-09
Alignment gi|XP_532557.2| PREDICTED: similar to Smad nuclear interacting ... 56 4e-08
>ref|XP_544466.2| PREDICTED: similar to protein phosphatase 1 regulatory inhibitor
subunit 8 isoform alpha isoform 1 [Canis familiaris].
Length = 351
Score = 559 bits (1441), Expect = e-159
Identities = 278/317 (87%), Positives = 280/317 (88%)
Frame = +2
Query: 20 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCDF 199
MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKG LFGRNPDLCDF
Sbjct: 1 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF 60
Query: 200 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 379
TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
Sbjct: 61 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 120
Query: 380 TRAYTLREKPQTLPSAVKGDEKMXXXXXXXXXXXXXXXXXXXXXNLTEFNTAHNKRISTL 559
TRAYTLREKPQTLPSAVKGDEKM NLTEFNTAHNKRISTL
Sbjct: 121 TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTL 180
Query: 560 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG 739
TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG
Sbjct: 181 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG 240
Query: 740 PGSLGLEKTGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD 919
PGSLGLE++GSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD
Sbjct: 241 PGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD 300
Query: 920 VDLTPVVPSAVNMKPAP 970
VDLTPVVPSAVNM PAP
Sbjct: 301 VDLTPVVPSAVNMNPAP 317
>ref|XP_865789.1| PREDICTED: similar to protein phosphatase 1 regulatory inhibitor
subunit 8 isoform alpha isoform 2 [Canis familiaris].
Length = 355
Score = 493 bits (1269), Expect = e-139
Identities = 244/268 (91%), Positives = 246/268 (91%)
Frame = +2
Query: 167 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQI 346
LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQI
Sbjct: 54 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQI 113
Query: 347 PIDSTVSFGASTRAYTLREKPQTLPSAVKGDEKMXXXXXXXXXXXXXXXXXXXXXNLTEF 526
PIDSTVSFGASTRAYTLREKPQTLPSAVKGDEKM NLTEF
Sbjct: 114 PIDSTVSFGASTRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEF 173
Query: 527 NTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTA 706
NTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTA
Sbjct: 174 NTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTA 233
Query: 707 VVPVKKKRVEGPGSLGLEKTGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGG 886
VVPVKKKRVEGPGSLGLE++GSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGG
Sbjct: 234 VVPVKKKRVEGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGG 293
Query: 887 LPMPYPNLAPDVDLTPVVPSAVNMKPAP 970
LPMPYPNLAPDVDLTPVVPSAVNM PAP
Sbjct: 294 LPMPYPNLAPDVDLTPVVPSAVNMNPAP 321
>ref|XP_850951.1| PREDICTED: similar to solute carrier family 4 (anion exchanger),
member 1, adaptor protein [Canis familiaris].
Length = 299
Score = 61.6 bits (148), Expect = 1e-09
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Frame = +2
Query: 23 AAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCDFT 202
A +A + P + P W G L+ +KG LFGR CD
Sbjct: 88 APSAGGPARAPPYREPPWGGPASAPYSLETLKGGTILGTRSLKGTSCCLFGRLSS-CDVC 146
Query: 203 IDHQSCSRVHAALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPID 355
++H S SR HA L + +L DL STHGTFL R+ P +++ +
Sbjct: 147 LEHPSVSRYHAVLQHRAAGLEGECDGQGPGFYLYDLGSTHGTFLNKTRIPPRTYRRVHVG 206
Query: 356 STVSFGASTRAYTLR 400
+ FG STR + L+
Sbjct: 207 HVLRFGGSTRLFLLQ 221
>ref|XP_532916.2| PREDICTED: similar to solute carrier family 4 (anion exchanger),
member 1, adaptor protein [Canis familiaris].
Length = 736
Score = 61.6 bits (148), Expect = 1e-09
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Frame = +2
Query: 23 AAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCDFT 202
A +A + P + P W G L+ +KG LFGR CD
Sbjct: 88 APSAGGPARAPPYREPPWGGPASAPYSLETLKGGTILGTRSLKGTSCCLFGRLSS-CDVC 146
Query: 203 IDHQSCSRVHAALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPID 355
++H S SR HA L + +L DL STHGTFL R+ P +++ +
Sbjct: 147 LEHPSVSRYHAVLQHRAAGLEGECDGQGPGFYLYDLGSTHGTFLNKTRIPPRTYRRVHVG 206
Query: 356 STVSFGASTRAYTLR 400
+ FG STR + L+
Sbjct: 207 HVLRFGGSTRLFLLQ 221
>ref|XP_851174.1| PREDICTED: similar to solute carrier family 4 (anion exchanger),
member 1, adaptor protein [Canis familiaris].
Length = 306
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 9/135 (6%)
Frame = +2
Query: 23 AAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCDFT 202
A +A + P + P W G L+ +KG LFGR CD
Sbjct: 88 APSAGGPARAPPYREPPWGGPASAPYSLETLKGGTILGTRSLKGTSCCLFGRLSS-CDVC 146
Query: 203 IDHQSCSRVHAALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPID 355
++H S SR HA L + +L DL STHGTFL R+ P ++ +
Sbjct: 147 LEHPSVSRYHAVLQHRAAGLEGECDGQGPGFYLYDLGSTHGTFLNKTRIPPRTYHRVHVG 206
Query: 356 STVSFGASTRAYTLR 400
+ FG STR + L+
Sbjct: 207 HVLRFGGSTRLFLLQ 221
>ref|XP_548678.2| PREDICTED: similar to solute carrier family 4 (anion exchanger),
member 1, adaptor protein [Canis familiaris].
Length = 533
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 9/135 (6%)
Frame = +2
Query: 23 AAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCDFT 202
A +A + P + P W G L+ +KG LFGR CD
Sbjct: 88 APSAGGPARAPPYREPPWGGPASAPYSLETLKGGTILGTRSLKGTSCCLFGRLSS-CDVC 146
Query: 203 IDHQSCSRVHAALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPID 355
++H S SR HA L + +L DL STHGTFL R+ P ++ +
Sbjct: 147 LEHPSVSRYHAVLQHRAAGLEGECDGQGPGFYLYDLGSTHGTFLNKTRIPPRTYHRVHVG 206
Query: 356 STVSFGASTRAYTLR 400
+ FG STR + L+
Sbjct: 207 HVLRFGGSTRLFLLQ 221
>ref|XP_532557.2| PREDICTED: similar to Smad nuclear interacting protein [Canis
familiaris].
Length = 500
Score = 56.2 bits (134), Expect = 4e-08
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +2
Query: 167 LFGRNPDLCDFTIDHQSCSRVHAALVYHK-----------HLKRVFLIDLNSTHGTFLGH 313
L GR+ + D IDH SCS+ HA Y R ++IDL S +GTFL +
Sbjct: 386 LLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVRPYIIDLGSGNGTFLNN 445
Query: 314 IRLEPHKPQQIPIDSTVSFGASTRAYT-LREKPQTLPSAVKGDE 442
R+EP + ++ + FG S+R Y L E T K DE
Sbjct: 446 KRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEVDRKEDE 489
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,756,636
Number of extensions: 1214377
Number of successful extensions: 4598
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4579
Number of HSP's successfully gapped: 7
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004341
(971 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054829.2| nuclear inhibitor of protein phosphatase 1 isof... 559 e-159
Alignment gi|NP_612568.1| nuclear inhibitor of protein phosphatase 1 isof... 308 5e-84
Alignment gi|NP_002704.1| nuclear inhibitor of protein phosphatase 1 isof... 189 4e-48
Alignment gi|NP_060628.2| kanadaptin [Homo sapiens]. 60 2e-09
Alignment gi|NP_078976.2| smad nuclear-interacting protein 1 [Homo sapien... 55 7e-08
>ref|NP_054829.2| nuclear inhibitor of protein phosphatase 1 isoform alpha [Homo
sapiens].
Length = 351
Score = 559 bits (1441), Expect = e-159
Identities = 278/317 (87%), Positives = 280/317 (88%)
Frame = +2
Query: 20 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCDF 199
MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKG LFGRNPDLCDF
Sbjct: 1 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF 60
Query: 200 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 379
TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
Sbjct: 61 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 120
Query: 380 TRAYTLREKPQTLPSAVKGDEKMXXXXXXXXXXXXXXXXXXXXXNLTEFNTAHNKRISTL 559
TRAYTLREKPQTLPSAVKGDEKM NLTEFNTAHNKRISTL
Sbjct: 121 TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTL 180
Query: 560 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG 739
TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG
Sbjct: 181 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG 240
Query: 740 PGSLGLEKTGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD 919
PGSLGLE++GSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD
Sbjct: 241 PGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD 300
Query: 920 VDLTPVVPSAVNMKPAP 970
VDLTPVVPSAVNM PAP
Sbjct: 301 VDLTPVVPSAVNMNPAP 317
>ref|NP_612568.1| nuclear inhibitor of protein phosphatase 1 isoform beta/delta [Homo
sapiens].
Length = 209
Score = 308 bits (789), Expect = 5e-84
Identities = 150/153 (98%), Positives = 152/153 (99%)
Frame = +2
Query: 512 NLTEFNTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRN 691
NLTEFNTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRN
Sbjct: 23 NLTEFNTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRN 82
Query: 692 MVQTAVVPVKKKRVEGPGSLGLEKTGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGT 871
MVQTAVVPVKKKRVEGPGSLGLE++GSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGT
Sbjct: 83 MVQTAVVPVKKKRVEGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGT 142
Query: 872 ALIGGLPMPYPNLAPDVDLTPVVPSAVNMKPAP 970
ALIGGLPMPYPNLAPDVDLTPVVPSAVNM PAP
Sbjct: 143 ALIGGLPMPYPNLAPDVDLTPVVPSAVNMNPAP 175
>ref|NP_002704.1| nuclear inhibitor of protein phosphatase 1 isoform gamma [Homo
sapiens].
Length = 127
Score = 189 bits (479), Expect = 4e-48
Identities = 90/93 (96%), Positives = 92/93 (98%)
Frame = +2
Query: 692 MVQTAVVPVKKKRVEGPGSLGLEKTGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGT 871
MVQTAVVPVKKKRVEGPGSLGLE++GSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGT
Sbjct: 1 MVQTAVVPVKKKRVEGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGT 60
Query: 872 ALIGGLPMPYPNLAPDVDLTPVVPSAVNMKPAP 970
ALIGGLPMPYPNLAPDVDLTPVVPSAVNM PAP
Sbjct: 61 ALIGGLPMPYPNLAPDVDLTPVVPSAVNMNPAP 93
>ref|NP_060628.2| kanadaptin [Homo sapiens].
Length = 796
Score = 60.5 bits (145), Expect = 2e-09
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Frame = +2
Query: 53 PLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCDFTIDHQSCSRVH 232
P + P W G L+ +KG LFGR CD ++H S SR H
Sbjct: 152 PPYQEPPWGGPATAPYSLETLKGGTILGTRSLKGTSYCLFGRLSG-CDVCLEHPSVSRYH 210
Query: 233 AALVYH---------KHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTR 385
A L + + +L DL STHGTFL R+ P ++ + V FG STR
Sbjct: 211 AVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTR 270
Query: 386 AYTLR 400
+ L+
Sbjct: 271 LFILQ 275
>ref|NP_078976.2| smad nuclear-interacting protein 1 [Homo sapiens].
Length = 396
Score = 55.5 bits (132), Expect = 7e-08
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +2
Query: 167 LFGRNPDLCDFTIDHQSCSRVHAALVYHK-----------HLKRVFLIDLNSTHGTFLGH 313
L GR+ + D IDH SCS+ HA Y + ++IDL S +GTFL +
Sbjct: 282 LLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNN 341
Query: 314 IRLEPHKPQQIPIDSTVSFGASTRAYT-LREKPQTLPSAVKGDE 442
R+EP + ++ + FG S+R Y L E T K DE
Sbjct: 342 KRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEIDRKDDE 385
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,932,690
Number of extensions: 1188858
Number of successful extensions: 4167
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4159
Number of HSP's successfully gapped: 5
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004341
(971 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666266.1| nuclear inhibitor of protein phosphatase 1 [Mus... 546 e-155
Alignment gi|NP_033232.2| solute carrier family 4 (anion exchanger), memb... 62 5e-10
Alignment gi|NP_780455.2| smad nuclear-interacting protein 1 [Mus musculu... 55 8e-08
>ref|NP_666266.1| nuclear inhibitor of protein phosphatase 1 [Mus musculus].
Length = 351
Score = 546 bits (1406), Expect = e-155
Identities = 271/317 (85%), Positives = 275/317 (86%)
Frame = +2
Query: 20 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCDF 199
MAAA NSGSSLPLFDCPTWAGKPPPGLHLDVVKG LFGRNPDLCDF
Sbjct: 1 MAAAVNSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF 60
Query: 200 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 379
TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
Sbjct: 61 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 120
Query: 380 TRAYTLREKPQTLPSAVKGDEKMXXXXXXXXXXXXXXXXXXXXXNLTEFNTAHNKRISTL 559
TRAYTLREKPQTLPSAVKGDEKM NLTEFNTAHNKRISTL
Sbjct: 121 TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTL 180
Query: 560 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG 739
TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKR+EG
Sbjct: 181 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRMEG 240
Query: 740 PGSLGLEKTGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD 919
GSLGLE++GSRRMQNFAFSGGLYGGLPPTHSE GSQPHGIHGTALIGGLPMPYPNLAPD
Sbjct: 241 SGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSETGSQPHGIHGTALIGGLPMPYPNLAPD 300
Query: 920 VDLTPVVPSAVNMKPAP 970
VDLTPVVPSAV + P P
Sbjct: 301 VDLTPVVPSAVAINPTP 317
>ref|NP_033232.2| solute carrier family 4 (anion exchanger), member 1, adaptor
protein [Mus musculus].
Length = 715
Score = 62.4 bits (150), Expect = 5e-10
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Frame = +2
Query: 17 KMAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCD 196
++A A+ + P + P+W L+ +KG FGR CD
Sbjct: 86 RVAPASGGPTRAPPYREPSWGSPATAPYSLETLKGGTILGTRTLKDTSCCFFGRLAS-CD 144
Query: 197 FTIDHQSCSRVHAALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIP 349
++H S SR HA L + H + +L DL STHGTFL R+ P ++
Sbjct: 145 ICLEHPSVSRYHAVLQHRGADPSGDSEGHEQGFYLYDLGSTHGTFLNKTRIPPRTYCRVH 204
Query: 350 IDSTVSFGASTRAYTLR 400
+ + FG STR + L+
Sbjct: 205 VGHVMRFGGSTRLFILQ 221
>ref|NP_780455.2| smad nuclear-interacting protein 1 [Mus musculus].
Length = 383
Score = 55.1 bits (131), Expect = 8e-08
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +2
Query: 167 LFGRNPDLCDFTIDHQSCSRVHAALVYHK-----------HLKRVFLIDLNSTHGTFLGH 313
L GR+ + D IDH SCS+ HA Y + ++IDL S +GTFL +
Sbjct: 269 LLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNN 328
Query: 314 IRLEPHKPQQIPIDSTVSFGASTRAYT-LREKPQTLPSAVKGDE 442
R+EP + ++ + FG S+R Y L E T K DE
Sbjct: 329 KRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSELDRKEDE 372
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,583,095
Number of extensions: 986302
Number of successful extensions: 3458
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3452
Number of HSP's successfully gapped: 3
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004341
(971 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230343.1| protein phosphatase 1, regulatory (inhibitor... 561 e-160
Alignment gi|XP_003361962.1| PREDICTED: smad nuclear-interacting protein ... 55 6e-08
>ref|NP_001230343.1| protein phosphatase 1, regulatory (inhibitor) subunit 8 [Sus
scrofa].
Length = 351
Score = 561 bits (1445), Expect = e-160
Identities = 279/317 (88%), Positives = 280/317 (88%)
Frame = +2
Query: 20 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGXXXXXXXXXXXXXXXLFGRNPDLCDF 199
MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKG LFGRNPDLCDF
Sbjct: 1 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF 60
Query: 200 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 379
TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
Sbjct: 61 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS 120
Query: 380 TRAYTLREKPQTLPSAVKGDEKMXXXXXXXXXXXXXXXXXXXXXNLTEFNTAHNKRISTL 559
TRAYTLREKPQTLPSAVKGDEKM NLTEFNTAHNKRISTL
Sbjct: 121 TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTL 180
Query: 560 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG 739
TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG
Sbjct: 181 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG 240
Query: 740 PGSLGLEKTGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD 919
PGSLGLE+TGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD
Sbjct: 241 PGSLGLEETGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD 300
Query: 920 VDLTPVVPSAVNMKPAP 970
VDLTPVVPSAVNM PAP
Sbjct: 301 VDLTPVVPSAVNMNPAP 317
>ref|XP_003361962.1| PREDICTED: smad nuclear-interacting protein 1-like [Sus scrofa].
Length = 326
Score = 55.1 bits (131), Expect = 6e-08
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +2
Query: 167 LFGRNPDLCDFTIDHQSCSRVHAALVYHK-----------HLKRVFLIDLNSTHGTFLGH 313
L GR+ + D IDH SCS+ HA Y + ++IDL S +GTFL +
Sbjct: 212 LLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNN 271
Query: 314 IRLEPHKPQQIPIDSTVSFGASTRAYT-LREKPQTLPSAVKGDE 442
R+EP + ++ + FG S+R Y L E T K DE
Sbjct: 272 KRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEVDRKEDE 315
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,796,936
Number of extensions: 755923
Number of successful extensions: 2904
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2899
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004341
(971 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 484 e-134
>Sscrofa_Chr06
|| Length = 157765593
Score = 484 bits (244), Expect = e-134
Identities = 250/252 (99%)
Strand = Plus / Plus
Query: 720 agaagaagcgggtggagggccctggctccctgggcctggaaaaaacagggagcaggcgca 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 78530677 agaagaagcgggtggagggccctggctccctgggcctggaagaaacagggagcaggcgca 78530736
Query: 780 tgcaaaactttgctttcagtggaggactctatgggggcctgccccccacgcacagtgaag 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78530737 tgcaaaactttgctttcagtggaggactctatgggggcctgccccccacgcacagtgaag 78530796
Query: 840 ccggctcccagccacacggcatccacgggacagcactcatcggtggcttgcctatgccat 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78530797 ccggctcccagccacacggcatccacgggacagcactcatcggtggcttgcctatgccat 78530856
Query: 900 atccaaacctcgctcctgacgtggacttgactcccgtcgtgccgtcagcagtgaacatga 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78530857 atccaaacctcgctcctgacgtggacttgactcccgtcgtgccgtcagcagtgaacatga 78530916
Query: 960 aacctgctccaa 971
| ||||||||||
Sbjct: 78530917 accctgctccaa 78530928
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 291 cacacggcactttcttgggtcacattcggttggaacctcacaagcctcagcaaattccca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78519454 cacacggcactttcttgggtcacattcggttggaacctcacaagcctcagcaaattccca 78519513
Query: 351 tcgattccacggtctcatttggtgcatccacaagggcgtacactctacgagagaagcctc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78519514 tcgattccacggtctcatttggtgcatccacaagggcgtacactctacgagagaagcctc 78519573
Query: 411 agacattgccatcggctgtgaaaggagatgagaagatgggtggagaggatgatgaactca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78519574 agacattgccatcggctgtgaaaggagatgagaagatgggtggagaggatgatgaactca 78519633
Query: 471 agggcttactggggcttccagaggaggaaacagagcttgat 511
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 78519634 agggcttactggggcttccagaggaggaaacagagcttgat 78519674
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 135 agaaactgattattgatgagaagaagtattacttatttgggagaaaccctgatttgtgtg 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78517518 agaaactgattattgatgagaagaagtattacttatttgggagaaaccctgatttgtgtg 78517577
Query: 195 actttaccattgaccaccagtcttgctctcgggtccacgctgccttggtctaccacaagc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78517578 actttaccattgaccaccagtcttgctctcgggtccacgctgccttggtctaccacaagc 78517637
Query: 255 atctgaagagagttttcctaatagatctcaacagta 290
||||||||||||||||||||||||||||||||||||
Sbjct: 78517638 atctgaagagagttttcctaatagatctcaacagta 78517673
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 512 aacctgacagagttcaatactgcccacaacaagcgtatttccactctcaccattgaggag 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78521230 aacctgacagagttcaatactgcccacaacaagcgtatttccactctcaccattgaggag 78521289
Query: 572 gggaatctggacattcagagaccaaagaggaaaaggaagaactcacgggtgaccttcagt 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78521290 gggaatctggacattcagagaccaaagaggaaaaggaagaactcacgggtgaccttcagt 78521349
Query: 632 gaggatgatgagatcatcaacccag 656
|||||||||||||||||||||||||
Sbjct: 78521350 gaggatgatgagatcatcaacccag 78521374
Score = 151 bits (76), Expect = 8e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 tgggagggggagacgcaagatggcggcagccgcgaactccggctccagcctcccgctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78508443 tgggagggggagacgcaagatggcggcagccgcgaactccggctccagcctcccgctgtt 78508502
Query: 61 cgactgcccgacctgg 76
||||||||||||||||
Sbjct: 78508503 cgactgcccgacctgg 78508518
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 75 gggcaggtaaaccccctcctggtttacatctggatgtagtcaaaggagacaagctaattg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78510407 gggcaggtaaaccccctcctggtttacatctggatgtagtcaaaggagacaagctaattg 78510466
Query: 135 ag 136
||
Sbjct: 78510467 ag 78510468
Score = 119 bits (60), Expect = 3e-24
Identities = 67/68 (98%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 654 cagaggatgtggatccctcagttggtcgcttccgaaacatggtccagactgctgtggttc 713
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 78527465 cagaggatgtggatccctcagttggtcgcttc-gaaacatggtccagactgctgtggttc 78527523
Query: 714 cagtcaag 721
||||||||
Sbjct: 78527524 cagtcaag 78527531
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,858,012
Number of extensions: 205
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 7
Length of query: 971
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 950
Effective length of database: 2,808,413,156
Effective search space: 2667992498200
Effective search space used: 2667992498200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)