Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004344
(931 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092633.1| peroxisomal membrane protein 4 [Bos taurus]. 301 5e-82
Alignment gi|XP_002684804.1| PREDICTED: peroxisomal membrane protein 4-li... 301 5e-82
Alignment gi|XP_001250784.1| PREDICTED: peroxisomal membrane protein 4-li... 301 5e-82
Alignment gi|XP_001251848.1| PREDICTED: peroxisomal membrane protein 4-li... 301 5e-82
Alignment gi|XP_002697761.1| PREDICTED: peroxisomal membrane protein 4-li... 285 4e-77
Alignment gi|XP_592743.2| PREDICTED: peroxisomal membrane protein 4-like ... 285 4e-77
>ref|NP_001092633.1| peroxisomal membrane protein 4 [Bos taurus].
Length = 212
Score = 301 bits (771), Expect = 5e-82
Identities = 143/187 (76%), Positives = 158/187 (84%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 361
YHAALAM+KGFRNGAVYG KIRAPHALVMTFLFRSGSL EKLRAILQATY HS LA FV
Sbjct: 23 YHAALAMLKGFRNGAVYGAKIRAPHALVMTFLFRSGSLREKLRAILQATYTHSWNLARFV 82
Query: 362 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYXXXXXXXXXXXXX 541
F YKGLC+LQSH+QGKT+Q HSF +AFIGGLL+FG NN+IN+QI+MY
Sbjct: 83 FLYKGLCALQSHVQGKTYQAHSFVSAFIGGLLVFGNNNNINSQISMYLLSRVLFALCRLG 142
Query: 542 XDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 721
+KG++PEPR DP+P FSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSN WHDLSDF
Sbjct: 143 VEKGFIPEPRLDPFPWFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNVWHDLSDF 202
Query: 722 LLYNKKK 742
+YNK +
Sbjct: 203 FIYNKSQ 209
>ref|XP_002684804.1| PREDICTED: peroxisomal membrane protein 4-like [Bos taurus].
Length = 212
Score = 301 bits (771), Expect = 5e-82
Identities = 143/187 (76%), Positives = 158/187 (84%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 361
YHAALAM+KGFRNGAVYG KIRAPHALVMTFLFRSGSL EKLRAILQATY HS LA FV
Sbjct: 23 YHAALAMLKGFRNGAVYGAKIRAPHALVMTFLFRSGSLREKLRAILQATYTHSWNLARFV 82
Query: 362 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYXXXXXXXXXXXXX 541
F YKGLC+LQSH+QGKT+Q HSF +AFIGGLL+FG NN+IN+QI+MY
Sbjct: 83 FLYKGLCALQSHVQGKTYQAHSFVSAFIGGLLVFGNNNNINSQISMYLLSRVLFALCRLG 142
Query: 542 XDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 721
+KG++PEPR DP+P FSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSN WHDLSDF
Sbjct: 143 VEKGFIPEPRLDPFPWFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNVWHDLSDF 202
Query: 722 LLYNKKK 742
+YNK +
Sbjct: 203 FIYNKSQ 209
>ref|XP_001250784.1| PREDICTED: peroxisomal membrane protein 4-like [Bos taurus].
Length = 212
Score = 301 bits (771), Expect = 5e-82
Identities = 143/187 (76%), Positives = 158/187 (84%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 361
YHAALAM+KGFRNGAVYG KIRAPHALVMTFLFRSGSL EKLRAILQATY HS LA FV
Sbjct: 23 YHAALAMLKGFRNGAVYGAKIRAPHALVMTFLFRSGSLREKLRAILQATYTHSWNLARFV 82
Query: 362 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYXXXXXXXXXXXXX 541
F YKGLC+LQSH+QGKT+Q HSF +AFIGGLL+FG NN+IN+QI+MY
Sbjct: 83 FLYKGLCALQSHVQGKTYQAHSFVSAFIGGLLVFGNNNNINSQISMYLLSRVLFALCRLG 142
Query: 542 XDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 721
+KG++PEPR DP+P FSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSN WHDLSDF
Sbjct: 143 VEKGFIPEPRLDPFPWFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNVWHDLSDF 202
Query: 722 LLYNKKK 742
+YNK +
Sbjct: 203 FIYNKSQ 209
>ref|XP_001251848.1| PREDICTED: peroxisomal membrane protein 4-like [Bos taurus].
Length = 212
Score = 301 bits (771), Expect = 5e-82
Identities = 143/187 (76%), Positives = 158/187 (84%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 361
YHAALAM+KGFRNGAVYG KIRAPHALVMTFLFRSGSL EKLRAILQATY HS LA FV
Sbjct: 23 YHAALAMLKGFRNGAVYGAKIRAPHALVMTFLFRSGSLREKLRAILQATYTHSWNLARFV 82
Query: 362 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYXXXXXXXXXXXXX 541
F YKGLC+LQSH+QGKT+Q HSF +AFIGGLL+FG NN+IN+QI+MY
Sbjct: 83 FLYKGLCALQSHVQGKTYQAHSFVSAFIGGLLVFGNNNNINSQISMYLLSRVLFALCRLG 142
Query: 542 XDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 721
+KG++PEPR DP+P FSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSN WHDLSDF
Sbjct: 143 VEKGFIPEPRLDPFPWFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNVWHDLSDF 202
Query: 722 LLYNKKK 742
+YNK +
Sbjct: 203 FIYNKSQ 209
>ref|XP_002697761.1| PREDICTED: peroxisomal membrane protein 4-like [Bos taurus].
Length = 212
Score = 285 bits (729), Expect = 4e-77
Identities = 135/187 (72%), Positives = 155/187 (82%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 361
YHAALAM+KGF+NGAVYG KIRAPHALVMTFLFRSGSL EKL A LQATY HS LA FV
Sbjct: 23 YHAALAMLKGFQNGAVYGAKIRAPHALVMTFLFRSGSLREKLLANLQATYTHSWNLARFV 82
Query: 362 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYXXXXXXXXXXXXX 541
F YKGLC+LQSH+QG+T+Q HSF +AFIGGLL+FG N+++N+QI+MY
Sbjct: 83 FLYKGLCALQSHVQGETYQAHSFVSAFIGGLLVFGNNSNVNSQISMYLLSRVLLALCHLG 142
Query: 542 XDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 721
+KG++PEPR DP+P F+GLVWGLVLWLFE HRPTLQPSLQSS TYLYEDSN WHDLSDF
Sbjct: 143 VEKGFIPEPRLDPFPWFTGLVWGLVLWLFECHRPTLQPSLQSSTTYLYEDSNVWHDLSDF 202
Query: 722 LLYNKKK 742
L+YNK +
Sbjct: 203 LIYNKSQ 209
>ref|XP_592743.2| PREDICTED: peroxisomal membrane protein 4-like [Bos taurus].
Length = 212
Score = 285 bits (729), Expect = 4e-77
Identities = 135/187 (72%), Positives = 155/187 (82%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 361
YHAALAM+KGF+NGAVYG KIRAPHALVMTFLFRSGSL EKL A LQATY HS LA FV
Sbjct: 23 YHAALAMLKGFQNGAVYGAKIRAPHALVMTFLFRSGSLREKLLANLQATYTHSWNLARFV 82
Query: 362 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYXXXXXXXXXXXXX 541
F YKGLC+LQSH+QG+T+Q HSF +AFIGGLL+FG N+++N+QI+MY
Sbjct: 83 FLYKGLCALQSHVQGETYQAHSFVSAFIGGLLVFGNNSNVNSQISMYLLSRVLLALCHLG 142
Query: 542 XDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 721
+KG++PEPR DP+P F+GLVWGLVLWLFE HRPTLQPSLQSS TYLYEDSN WHDLSDF
Sbjct: 143 VEKGFIPEPRLDPFPWFTGLVWGLVLWLFECHRPTLQPSLQSSTTYLYEDSNVWHDLSDF 202
Query: 722 LLYNKKK 742
L+YNK +
Sbjct: 203 LIYNKSQ 209
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,608,070
Number of extensions: 1148211
Number of successful extensions: 6371
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6219
Number of HSP's successfully gapped: 6
Length of query: 310
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,306,398
Effective search space: 2975730784
Effective search space used: 2975730784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004344
(931 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852479.1| PREDICTED: similar to peroxisomal membrane prot... 295 3e-80
>ref|XP_852479.1| PREDICTED: similar to peroxisomal membrane protein 4 [Canis
familiaris].
Length = 281
Score = 295 bits (756), Expect = 3e-80
Identities = 140/185 (75%), Positives = 156/185 (84%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 361
YHAALAM+KGFRNGAVYG KIRAPHALVMTFLFRSGS +KL AILQATY HSR LA FV
Sbjct: 92 YHAALAMLKGFRNGAVYGAKIRAPHALVMTFLFRSGSFQDKLWAILQATYTHSRNLACFV 151
Query: 362 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYXXXXXXXXXXXXX 541
FTYKGLC+LQS +QG T+QVHSF AAFIG LL+FG+NN+IN+QINMY
Sbjct: 152 FTYKGLCALQSRVQGDTYQVHSFLAAFIGSLLVFGDNNNINSQINMYLLSRVLFALCRLG 211
Query: 542 XDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 721
+KGY+PEPRWD + LF+ +VWGLVLWLFEYHRPTLQPSLQSSMTYLY+DSN WHD+SDF
Sbjct: 212 VEKGYIPEPRWDLFRLFTAVVWGLVLWLFEYHRPTLQPSLQSSMTYLYQDSNVWHDISDF 271
Query: 722 LLYNK 736
LLYNK
Sbjct: 272 LLYNK 276
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,012,444
Number of extensions: 1167282
Number of successful extensions: 6260
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6188
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 207
Effective length of database: 15,440,896
Effective search space: 3196265472
Effective search space used: 3196265472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004344
(931 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009169.3| peroxisomal membrane protein 4 isoform a [Homo ... 293 2e-79
Alignment gi|NP_899634.1| peroxisomal membrane protein 4 isoform b [Homo ... 71 2e-12
>ref|NP_009169.3| peroxisomal membrane protein 4 isoform a [Homo sapiens].
Length = 212
Score = 293 bits (749), Expect = 2e-79
Identities = 137/187 (73%), Positives = 158/187 (84%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 361
YHAALA++KGFRNGAVYG KIRAPHALVMTFLFR+GSL EKL AILQATYIHS LA FV
Sbjct: 23 YHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGSLQEKLWAILQATYIHSWNLARFV 82
Query: 362 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYXXXXXXXXXXXXX 541
FTYKGL +LQS++QGKT+ H+F AAF+GG+L+FGENN+IN+QINMY
Sbjct: 83 FTYKGLRALQSYIQGKTYPAHAFLAAFLGGILVFGENNNINSQINMYLLSRVLFALSRLA 142
Query: 542 XDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 721
+KGY+PEPRWDP+PL + +VWGLVLWLFEYHR TLQPSLQSSMTYLYEDSN WHD+SDF
Sbjct: 143 VEKGYIPEPRWDPFPLLTAVVWGLVLWLFEYHRSTLQPSLQSSMTYLYEDSNVWHDISDF 202
Query: 722 LLYNKKK 742
L+YNK +
Sbjct: 203 LVYNKSR 209
>ref|NP_899634.1| peroxisomal membrane protein 4 isoform b [Homo sapiens].
Length = 71
Score = 70.9 bits (172), Expect = 2e-12
Identities = 32/36 (88%), Positives = 35/36 (97%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSG 289
YHAALA++KGFRNGAVYG KIRAPHALVMTFLFR+G
Sbjct: 23 YHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNG 58
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,275,880
Number of extensions: 1138598
Number of successful extensions: 6166
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6043
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,934,836
Effective search space: 3106445888
Effective search space used: 3106445888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004344
(931 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067509.1| peroxisomal membrane protein 4 [Mus musculus]. 294 8e-80
>ref|NP_067509.1| peroxisomal membrane protein 4 [Mus musculus].
Length = 212
Score = 294 bits (752), Expect = 8e-80
Identities = 140/185 (75%), Positives = 158/185 (85%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 361
YHAALA+IKGFRNGAVYGVKIRAPHALVMTFLFRSGSL EKL+AIL+ATYIHSR LA FV
Sbjct: 23 YHAALAVIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLREKLQAILKATYIHSRNLACFV 82
Query: 362 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYXXXXXXXXXXXXX 541
F YK L +LQSH+QG+T Q+HSF AAFIGGLLLFGENN+IN+QINMY
Sbjct: 83 FAYKSLHALQSHVQGETHQMHSFLAAFIGGLLLFGENNNINSQINMYLTSRVLYALCRLG 142
Query: 542 XDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 721
+KGY+P +WDP+PL + ++WGLVLWLFEYHRPTLQPSLQSSMTYLYEDSN WHDLSDF
Sbjct: 143 VEKGYIPALKWDPFPLHTAVIWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNVWHDLSDF 202
Query: 722 LLYNK 736
L++NK
Sbjct: 203 LIFNK 207
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,267,040
Number of extensions: 949303
Number of successful extensions: 4955
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4799
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 209
Effective length of database: 12,583,923
Effective search space: 2630039907
Effective search space used: 2630039907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004344
(931 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926956.2| PREDICTED: peroxisomal membrane protein 4 [S... 357 7e-99
>ref|XP_001926956.2| PREDICTED: peroxisomal membrane protein 4 [Sus scrofa].
Length = 209
Score = 357 bits (915), Expect = 7e-99
Identities = 173/187 (92%), Positives = 173/187 (92%)
Frame = +2
Query: 182 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 361
YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV
Sbjct: 23 YHAALAMIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLWEKLRAILQATYIHSRTLASFV 82
Query: 362 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYXXXXXXXXXXXXX 541
FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMY
Sbjct: 83 FTYKGLCSLQSHLQGKTFQVHSFTAAFIGGLLLFGENNSINNQINMYLLSRLLFALCRLG 142
Query: 542 XDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 721
DKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF
Sbjct: 143 LDKGYLPEPRWDPYPLFSGLVWGLVLWLFEYHRPTLQPSLQSSMTYLYEDSNTWHDLSDF 202
Query: 722 LLYNKKK 742
LLYNKKK
Sbjct: 203 LLYNKKK 209
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,290,139
Number of extensions: 739941
Number of successful extensions: 4141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4085
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 211
Effective length of database: 8,879,129
Effective search space: 1873496219
Effective search space used: 1873496219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004344
(931 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 448 e-123
>Sscrofa_Chr17
|| Length = 69701581
Score = 448 bits (226), Expect = e-123
Identities = 226/226 (100%)
Strand = Plus / Minus
Query: 3 acaaagatgtggtttgccgagcacccgccggcagggcaggttgttcaggagggacacctg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42150770 acaaagatgtggtttgccgagcacccgccggcagggcaggttgttcaggagggacacctg 42150711
Query: 63 gctgtcacggcgcttcacgcttggtgcctgccaccccgcgaactgcccgcactatggccg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42150710 gctgtcacggcgcttcacgcttggtgcctgccaccccgcgaactgcccgcactatggccg 42150651
Query: 123 ccccgccgcagctgcggactctgctccttgcggtcaacgcactcttgcgcaagcgccgct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42150650 ccccgccgcagctgcggactctgctccttgcggtcaacgcactcttgcgcaagcgccgct 42150591
Query: 183 accacgctgcgttggccatgattaagggcttccggaacggagcagt 228
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42150590 accacgctgcgttggccatgattaagggcttccggaacggagcagt 42150545
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 288 gcagcctctgggagaagctgcgggccatcctgcaggccacctacatccactccaggaccc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42144064 gcagcctctgggagaagctgcgggccatcctgcaggccacctacatccactccaggaccc 42144005
Query: 348 tggccagctttgtgttcacctacaagggactctgctccctgcagtcccatctgcagggca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42144004 tggccagctttgtgttcacctacaagggactctgctccctgcagtcccatctgcagggca 42143945
Query: 408 agaccttccaggtgcactcattcactgctgccttcatcgggggcctgctgctgtttggag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42143944 agaccttccaggtgcactcattcactgctgccttcatcgggggcctgctgctgtttggag 42143885
Query: 468 aaaacaatagcatcaacaaccag 490
|||||||||||||||||||||||
Sbjct: 42143884 aaaacaatagcatcaacaaccag 42143862
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 229 ctacggagtcaaaatccgggcccctcatgccctggtcatgacctttctcttccggagtgg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42148189 ctacggagtcaaaatccgggcccctcatgccctggtcatgacctttctcttccggagtgg 42148130
Query: 289 cag 291
|||
Sbjct: 42148129 cag 42148127
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,499,018
Number of extensions: 161
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 3
Length of query: 931
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 910
Effective length of database: 2,808,413,156
Effective search space: 2555655971960
Effective search space used: 2555655971960
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)