Animal-Genome cDNA 20110601C-004349


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004349
         (1061 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179462.1| peptidase M20 domain-containing protein 2 [B...   273   2e-73
Alignment   gi|XP_002690240.1| PREDICTED: peptidase M20 domain containing 2...   273   2e-73

>ref|NP_001179462.1| peptidase M20 domain-containing protein 2 [Bos taurus].
          Length = 428

 Score =  273 bits (697), Expect = 2e-73
 Identities = 134/154 (87%), Positives = 139/154 (90%)
 Frame = +3

Query: 270 MRPEEERPVEGGACVGVSQLELLKLRAADCIDEAAERLGALSRAIWNKPELAYEEHHAHG 449
           MRP EERPVEGGAC  VS LELLKLRAA+C+D AAERLGALSRAIW++PELAYEEHHAHG
Sbjct: 1   MRPGEERPVEGGACASVSDLELLKLRAAECVDAAAERLGALSRAIWSEPELAYEEHHAHG 60

Query: 450 VLTRFFESEPPAGSWAVQPHYQLATAFRAEWGPPPRGLAATRPLHLGFLCEYDALPDIGH 629
           VLTRFF+SE PAGSWAVQPHYQLATAFRAEWG  P G AA RPLHLGFLCEYDALP IGH
Sbjct: 61  VLTRFFQSETPAGSWAVQPHYQLATAFRAEWG-SPGGWAAPRPLHLGFLCEYDALPGIGH 119

Query: 630 ACGHNLIAEVGAAAALGVKGCLESLPGPPLPVKV 731
           ACGHNLIAEVGAAAALGVKG LESL G PLPVKV
Sbjct: 120 ACGHNLIAEVGAAAALGVKGALESLAGLPLPVKV 153


>ref|XP_002690240.1| PREDICTED: peptidase M20 domain containing 2 [Bos taurus].
          Length = 428

 Score =  273 bits (697), Expect = 2e-73
 Identities = 134/154 (87%), Positives = 139/154 (90%)
 Frame = +3

Query: 270 MRPEEERPVEGGACVGVSQLELLKLRAADCIDEAAERLGALSRAIWNKPELAYEEHHAHG 449
           MRP EERPVEGGAC  VS LELLKLRAA+C+D AAERLGALSRAIW++PELAYEEHHAHG
Sbjct: 1   MRPGEERPVEGGACASVSDLELLKLRAAECVDAAAERLGALSRAIWSEPELAYEEHHAHG 60

Query: 450 VLTRFFESEPPAGSWAVQPHYQLATAFRAEWGPPPRGLAATRPLHLGFLCEYDALPDIGH 629
           VLTRFF+SE PAGSWAVQPHYQLATAFRAEWG  P G AA RPLHLGFLCEYDALP IGH
Sbjct: 61  VLTRFFQSETPAGSWAVQPHYQLATAFRAEWG-SPGGWAAPRPLHLGFLCEYDALPGIGH 119

Query: 630 ACGHNLIAEVGAAAALGVKGCLESLPGPPLPVKV 731
           ACGHNLIAEVGAAAALGVKG LESL G PLPVKV
Sbjct: 120 ACGHNLIAEVGAAAALGVKGALESLAGLPLPVKV 153


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,119,912
Number of extensions: 1237505
Number of successful extensions: 7464
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7391
Number of HSP's successfully gapped: 2
Length of query: 353
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,273,310
Effective search space: 3568327500
Effective search space used: 3568327500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004349
         (1061 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_539037.2| PREDICTED: hypothetical protein XP_539037 [Cani...   256   2e-68

>ref|XP_539037.2| PREDICTED: hypothetical protein XP_539037 [Canis familiaris].
          Length = 433

 Score =  256 bits (655), Expect = 2e-68
 Identities = 127/154 (82%), Positives = 132/154 (85%)
 Frame = +3

Query: 270 MRPEEERPVEGGACVGVSQLELLKLRAADCIDEAAERLGALSRAIWNKPELAYEEHHAHG 449
           MRP EERPV+GGAC GV  LELLKLRAA+ IDEAAERLGALSRAIW++PELAYEEH AH 
Sbjct: 1   MRPGEERPVDGGACGGVPALELLKLRAAERIDEAAERLGALSRAIWSEPELAYEEHRAHD 60

Query: 450 VLTRFFESEPPAGSWAVQPHYQLATAFRAEWGPPPRGLAATRPLHLGFLCEYDALPDIGH 629
           VLTRFFE EPPA SW VQPHYQLATAFRAEW  PP G A  RPL LGFLCEYDALP +GH
Sbjct: 61  VLTRFFEREPPAASWTVQPHYQLATAFRAEW-EPPGGRATPRPLQLGFLCEYDALPGLGH 119

Query: 630 ACGHNLIAEVGAAAALGVKGCLESLPGPPLPVKV 731
           ACGHNLIAEVGAAAALGVKG LE  PGPP PVKV
Sbjct: 120 ACGHNLIAEVGAAAALGVKGALEGRPGPPPPVKV 153


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,957,067
Number of extensions: 1283294
Number of successful extensions: 7749
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7671
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,407,560
Effective search space: 3836482440
Effective search space used: 3836482440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004349
         (1061 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001010853.1| peptidase M20 domain-containing protein 2 [H...   258   5e-69

>ref|NP_001010853.1| peptidase M20 domain-containing protein 2 [Homo sapiens].
          Length = 436

 Score =  258 bits (660), Expect = 5e-69
 Identities = 129/156 (82%), Positives = 136/156 (87%), Gaps = 2/156 (1%)
 Frame = +3

Query: 270 MRPEEERPVEGGACVGVSQLELLKLRAADCIDEAAERLGALSRAIWNKPELAYEEHHAHG 449
           MRP  ERPVEGGAC G S+LELLKLR+A+CIDEAAERLGALSRAIW++PELAYEEHHAH 
Sbjct: 1   MRPGGERPVEGGACNGRSELELLKLRSAECIDEAAERLGALSRAIWSQPELAYEEHHAHR 60

Query: 450 VLTRFFESEPPAGSWAVQPHYQLATAFRAEWGPP-PRGLAAT-RPLHLGFLCEYDALPDI 623
           VLT FFE EPPA SWAVQPHYQL TAFRAEW PP  R  +AT RPLHLGFLCEYDALP I
Sbjct: 61  VLTHFFEREPPAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALPGI 120

Query: 624 GHACGHNLIAEVGAAAALGVKGCLESLPGPPLPVKV 731
           GHACGHNLIAEVGAAAALGV+G LE LP PP PVKV
Sbjct: 121 GHACGHNLIAEVGAAAALGVRGALEGLPRPPPPVKV 156


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,845,110
Number of extensions: 1237646
Number of successful extensions: 6918
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6867
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,868,908
Effective search space: 3702358092
Effective search space used: 3702358092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004349
         (1061 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030039.2| peptidase M20 domain-containing protein 2 [M...   210   2e-54

>ref|NP_001030039.2| peptidase M20 domain-containing protein 2 [Mus musculus].
          Length = 431

 Score =  210 bits (534), Expect = 2e-54
 Identities = 108/154 (70%), Positives = 118/154 (76%)
 Frame = +3

Query: 270 MRPEEERPVEGGACVGVSQLELLKLRAADCIDEAAERLGALSRAIWNKPELAYEEHHAHG 449
           M P  ERP E G     ++LELLK RAA+ IDEAAERLGALSRAIW+ PELAYEEH AHG
Sbjct: 1   MGPVVERPAEPGTS-SAAELELLKRRAAERIDEAAERLGALSRAIWSAPELAYEEHRAHG 59

Query: 450 VLTRFFESEPPAGSWAVQPHYQLATAFRAEWGPPPRGLAATRPLHLGFLCEYDALPDIGH 629
            LTRFFE EPPA SWAVQPH+ L TAFRAEW  PP   A  R L + FLCEYDALP +GH
Sbjct: 60  ELTRFFECEPPAASWAVQPHFGLPTAFRAEWA-PPESAAGPRALQVAFLCEYDALPALGH 118

Query: 630 ACGHNLIAEVGAAAALGVKGCLESLPGPPLPVKV 731
           ACGHNLIAEVG AAALG++  LES+  PP PVKV
Sbjct: 119 ACGHNLIAEVGVAAALGLRAALESIAAPP-PVKV 151


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,214,513
Number of extensions: 1010507
Number of successful extensions: 5515
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5435
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,553,887
Effective search space: 3151025637
Effective search space used: 3151025637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004349
         (1061 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001928624.1| PREDICTED: peptidase M20 domain-containing p...   324   6e-89

>ref|XP_001928624.1| PREDICTED: peptidase M20 domain-containing protein 2 [Sus scrofa].
          Length = 434

 Score =  324 bits (830), Expect = 6e-89
 Identities = 154/154 (100%), Positives = 154/154 (100%)
 Frame = +3

Query: 270 MRPEEERPVEGGACVGVSQLELLKLRAADCIDEAAERLGALSRAIWNKPELAYEEHHAHG 449
           MRPEEERPVEGGACVGVSQLELLKLRAADCIDEAAERLGALSRAIWNKPELAYEEHHAHG
Sbjct: 1   MRPEEERPVEGGACVGVSQLELLKLRAADCIDEAAERLGALSRAIWNKPELAYEEHHAHG 60

Query: 450 VLTRFFESEPPAGSWAVQPHYQLATAFRAEWGPPPRGLAATRPLHLGFLCEYDALPDIGH 629
           VLTRFFESEPPAGSWAVQPHYQLATAFRAEWGPPPRGLAATRPLHLGFLCEYDALPDIGH
Sbjct: 61  VLTRFFESEPPAGSWAVQPHYQLATAFRAEWGPPPRGLAATRPLHLGFLCEYDALPDIGH 120

Query: 630 ACGHNLIAEVGAAAALGVKGCLESLPGPPLPVKV 731
           ACGHNLIAEVGAAAALGVKGCLESLPGPPLPVKV
Sbjct: 121 ACGHNLIAEVGAAAALGVKGCLESLPGPPLPVKV 154


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,974,833
Number of extensions: 804249
Number of successful extensions: 4717
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4685
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,854,232
Effective search space: 2240120696
Effective search space used: 2240120696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004349
         (1061 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                        2087   0.0  

>Sscrofa_Chr01 
||          Length = 315321322

 Score = 2087 bits (1053), Expect = 0.0
 Identities = 1059/1061 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1        gaacagtcaagggtatggatccgagacgaggactctcagaacccgatgtcttcctaggga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63965895 gaacagtcaagggtatggatccgagacgaggactctcagaacccgatgtcttcctaggga 63965954

                                                                            
Query: 61       gcgggtttctgctggctgcagaaggggcggagcacgtttctggtgatacgctggaggcgg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63965955 gcgggtttctgctggctgcagaaggggcggagcacgtttctggtgatacgctggaggcgg 63966014

                                                                            
Query: 121      ggcccgcggcttgggagcgggtctcccgggagctgtggagacaacctgagaggacgccca 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966015 ggcccgcggcttgggagcgggtctcccgggagctgtggagacaacctgagaggacgccca 63966074

                                                                            
Query: 181      gcgcgtgcgcaggcgcagtgggccgcgaggagggagggatccagccggccgtcccgagga 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966075 gcgcgtgcgcaggcgcagtgggccgcgaggagggagggatccagccggccgtcccgagga 63966134

                                                                            
Query: 241      gcgctgaccggctggcagctgtgggcacgatgagacccgaagaggagcggcccgtggagg 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966135 gcgctgaccggctggcagctgtgggcacgatgagacccgaagaggagcggcccgtggagg 63966194

                                                                            
Query: 301      ggggcgcctgcgtcggcgtctcccagctggagctgttgaagctgcgcgccgcggattgca 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966195 ggggcgcctgcgtcggcgtctcccagctggagctgttgaagctgcgcgccgcggattgca 63966254

                                                                            
Query: 361      tcgacgaagcggccgagcgcctgggggctctgagccgagcgatctggaacaagccggagt 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966255 tcgacgaagcggccgagcgcctgggggctctgagccgagcgatctggaacaagccggagt 63966314

                                                                            
Query: 421      tggcctacgaggagcaccatgcccacggcgtgctgacgcgcttcttcgagagcgagcccc 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966315 tggcctacgaggagcaccatgcccacggcgtgctgacgcgcttcttcgagagcgagcccc 63966374

                                                                            
Query: 481      cggccgggtcgtgggccgtgcagccgcactaccagctggccacggccttccgcgccgagt 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966375 cggccgggtcgtgggccgtgcagccgcactaccagctggccacggccttccgcgccgagt 63966434

                                                                            
Query: 541      gggggccgccgccgcgggggttggcggcgacgcgcccgctgcacctgggcttcctttgcg 600
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966435 gggggccgccgccgcgggggttggcggcgacgcgcccgctgcacctgggcttcctttgcg 63966494

                                                                            
Query: 601      agtacgacgcgctgcccgacatcgggcacgcctgcggccataacctaatcgccgaggtcg 660
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966495 agtacgacgcgctgcccgacatcgggcacgcctgcggccataacctaatcgccgaggtcg 63966554

                                                                            
Query: 661      gggcggcggccgccctgggtgtgaaggggtgcctggagagcctccctgggccgcctctgc 720
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966555 gggcggcggccgccctgggtgtgaaggggtgcctggagagcctccctgggccgcctctgc 63966614

                                                                            
Query: 721      cggtgaaggtgaggtggggcccgagcggggggctcccatcgcctgtccaggccgggacca 780
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966615 cggtgaaggtgaggtggggcccgagcggggggctcccatcgcctgtccaggccgggacca 63966674

                                                                            
Query: 781      accgcagaagtgcggtttccctgagcatccgtcccttgccagcgcggcgcaggtgtaggg 840
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966675 accgcagaagtgcggtttccctgagcatccgtcccttgccagcgcggcgcaggtgtaggg 63966734

                                                                            
Query: 841      gaaagcactcgaccacctggcctttgctagtgggcagaagcccaggatcaaagtttatag 900
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966735 gaaagcactcgaccacctggcctttgctagtgggcagaagcccaggatcaaagtttatag 63966794

                                                                            
Query: 901      ttcctgagttgccgacctggcgacattttgcagatttttgccttttctttcctgcgttgt 960
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966795 ttcctgagttgccgacctggcgacattttgcagatttttgccttttctttcctgcgttgt 63966854

                                                                            
Query: 961      tgtaaacactggagtggactttctcctttaaggaataacttagaaccacgcctggttttc 1020
                |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 63966855 tgtaaacactggagtggactttctcctttaggaaataacttagaaccacgcctggttttc 63966914

                                                         
Query: 1021     gtgatggcttatttttggtatcagggaaccgcaatttgctg 1061
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 63966915 gtgatggcttatttttggtatcagggaaccgcaatttgctg 63966955


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,365,036
Number of extensions: 151
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 1061
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1040
Effective length of database: 2,808,413,156
Effective search space: 2920749682240
Effective search space used: 2920749682240
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)