Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004356
(930 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092579.1| family with sequence similarity 64, member A... 290 9e-79
>ref|NP_001092579.1| family with sequence similarity 64, member A [Bos taurus].
Length = 239
Score = 290 bits (743), Expect = 9e-79
Identities = 158/239 (66%), Positives = 168/239 (70%), Gaps = 11/239 (4%)
Frame = +2
Query: 104 MSSRWPSVGVSMXXXXXXXXXXXXXXXXXXPAVSHPDTSSGALGSLCRQFQRRLPLRAVS 283
M+SRWP+VG S+ P SHPDTSSGALGSLCRQFQRRLPLRAVS
Sbjct: 1 MASRWPAVGASLRRRSLQNQERLEESEALQPVASHPDTSSGALGSLCRQFQRRLPLRAVS 60
Query: 284 LNLGAGPSWKRLETPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVXXXX 463
LNLG GPSWKRLETPEPGQQGLQAAARSAK+ LGAMSQR QESC SGTKWLVETQV
Sbjct: 61 LNLGVGPSWKRLETPEPGQQGLQAAARSAKSTLGAMSQRIQESCQSGTKWLVETQVKARR 120
Query: 464 XXXXXXXXSSPLARSLSHRSSQLSGAAPACSTLGPWD-----------XXXXXXXXXXXX 610
SSP A SLS RS++LS AAPA STLGPW+
Sbjct: 121 RKRGAQKGSSPPAHSLSQRSTRLSVAAPAHSTLGPWEKEYHRLSVQMSSRAHPWRRSRRE 180
Query: 611 XXXXXXYSSAEPLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD 787
YSSAEPLCSPSESDSDLEPVGAGI+HLQK+SQELEEAIVAE+SGDMTVSLIRD
Sbjct: 181 AAFRSPYSSAEPLCSPSESDSDLEPVGAGIRHLQKVSQELEEAIVAEDSGDMTVSLIRD 239
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,460,414
Number of extensions: 1027000
Number of successful extensions: 5074
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5056
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,306,398
Effective search space: 2975730784
Effective search space used: 2975730784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004356
(930 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546564.2| PREDICTED: hypothetical protein XP_546564 [Cani... 257 1e-68
>ref|XP_546564.2| PREDICTED: hypothetical protein XP_546564 [Canis familiaris].
Length = 233
Score = 257 bits (657), Expect = 1e-68
Identities = 144/238 (60%), Positives = 156/238 (65%), Gaps = 10/238 (4%)
Frame = +2
Query: 104 MSSRWPSVGVSMXXXXXXXXXXXXXXXXXXPAVSHPDTSSGALGSLCRQFQRRLPLRAVS 283
M+S+WP VG S A HPD S GALGSLCRQFQRRLPLRAVS
Sbjct: 1 MASKWPGVGAS----GRQDQEQLQEPEVVLRAAGHPDISCGALGSLCRQFQRRLPLRAVS 56
Query: 284 LNLGAGPSWKRLETPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVXXXX 463
LNLGAGPSWKRLE+PEPGQQGLQAAARSAKNALGA+SQR QESC SGT+WLVETQV
Sbjct: 57 LNLGAGPSWKRLESPEPGQQGLQAAARSAKNALGAVSQRIQESCQSGTRWLVETQV-KAR 115
Query: 464 XXXXXXXXSSPLARSLSHRSSQLSGAAPACSTLGPWD----------XXXXXXXXXXXXX 613
SSP A SLS + +L G PA +LGPW+
Sbjct: 116 RRRGPQKGSSPPAHSLSQKGGRLPGTVPAYLSLGPWEDCHRPSAHGGPRAYPGRRFRRDA 175
Query: 614 XXXXXYSSAEPLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD 787
YSS EPLCSPSESDSDLEPVGAG+QHL+KLSQEL+EAIVA E DMTVSLIRD
Sbjct: 176 ALRSPYSSTEPLCSPSESDSDLEPVGAGLQHLRKLSQELDEAIVAAEGSDMTVSLIRD 233
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,797,714
Number of extensions: 1046347
Number of successful extensions: 5234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5199
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 207
Effective length of database: 15,440,896
Effective search space: 3196265472
Effective search space used: 3196265472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004356
(930 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061886.2| family with sequence similarity 64, member A is... 257 9e-69
Alignment gi|NP_001182157.1| family with sequence similarity 64, member A... 247 1e-65
>ref|NP_061886.2| family with sequence similarity 64, member A isoform 1 [Homo
sapiens].
Length = 238
Score = 257 bits (657), Expect = 9e-69
Identities = 144/239 (60%), Positives = 159/239 (66%), Gaps = 11/239 (4%)
Frame = +2
Query: 104 MSSRWPSVGVSMXXXXXXXXXXXXXXXXXXPAVSHPDTSSGALGSLCRQFQRRLPLRAVS 283
M+SRW ++G S+ P VSH +TS GALGSLCRQFQRRLPLRAV+
Sbjct: 1 MASRWQNMGTSVRRRSLQHQEQLEDSKELQPVVSHQETSVGALGSLCRQFQRRLPLRAVN 60
Query: 284 LNLGAGPSWKRLETPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVXXXX 463
LNL AGPSWKRLETPEPGQQGLQAAARSAK+ALGA+SQR QESC SGTKWLVETQV
Sbjct: 61 LNLRAGPSWKRLETPEPGQQGLQAAARSAKSALGAVSQRIQESCQSGTKWLVETQVKARR 120
Query: 464 XXXXXXXXSSPLARSLSHRSSQLSGAAPACSTLGPWD-----------XXXXXXXXXXXX 610
S SLS +S++LSGAAPA S PW+
Sbjct: 121 RKRGAQKGSGSPTHSLSQKSTRLSGAAPAHSAADPWEKEHHRLSVRMGSHAHPLRRSRRE 180
Query: 611 XXXXXXYSSAEPLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD 787
YSS EPLCSPSESDSDLEPVGAGIQHLQKLSQEL+EAI+AEESGD+ VSLI D
Sbjct: 181 AAFRSPYSSTEPLCSPSESDSDLEPVGAGIQHLQKLSQELDEAIMAEESGDI-VSLIHD 238
>ref|NP_001182157.1| family with sequence similarity 64, member A isoform 2 [Homo
sapiens].
Length = 248
Score = 247 bits (630), Expect = 1e-65
Identities = 136/228 (59%), Positives = 150/228 (65%), Gaps = 11/228 (4%)
Frame = +2
Query: 104 MSSRWPSVGVSMXXXXXXXXXXXXXXXXXXPAVSHPDTSSGALGSLCRQFQRRLPLRAVS 283
M+SRW ++G S+ P VSH +TS GALGSLCRQFQRRLPLRAV+
Sbjct: 1 MASRWQNMGTSVRRRSLQHQEQLEDSKELQPVVSHQETSVGALGSLCRQFQRRLPLRAVN 60
Query: 284 LNLGAGPSWKRLETPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVXXXX 463
LNL AGPSWKRLETPEPGQQGLQAAARSAK+ALGA+SQR QESC SGTKWLVETQV
Sbjct: 61 LNLRAGPSWKRLETPEPGQQGLQAAARSAKSALGAVSQRIQESCQSGTKWLVETQVKARR 120
Query: 464 XXXXXXXXSSPLARSLSHRSSQLSGAAPACSTLGPWD-----------XXXXXXXXXXXX 610
S SLS +S++LSGAAPA S PW+
Sbjct: 121 RKRGAQKGSGSPTHSLSQKSTRLSGAAPAHSAADPWEKEHHRLSVRMGSHAHPLRRSRRE 180
Query: 611 XXXXXXYSSAEPLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEE 754
YSS EPLCSPSESDSDLEPVGAGIQHLQKLSQEL+EAI+AEE
Sbjct: 181 AAFRSPYSSTEPLCSPSESDSDLEPVGAGIQHLQKLSQELDEAIMAEE 228
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,035,227
Number of extensions: 1018983
Number of successful extensions: 4735
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4722
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,934,836
Effective search space: 3106445888
Effective search space used: 3106445888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004356
(930 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_653109.2| family with sequence similarity 64, member A [M... 219 2e-57
>ref|NP_653109.2| family with sequence similarity 64, member A [Mus musculus].
Length = 231
Score = 219 bits (558), Expect = 2e-57
Identities = 131/237 (55%), Positives = 146/237 (61%), Gaps = 9/237 (3%)
Frame = +2
Query: 104 MSSRWPSVGVSMXXXXXXXXXXXXXXXXXXPAVSHPDTSSGALGSLCRQFQRRLPLRAVS 283
M+S+W + S+ A HP+T G LGSLCRQFQRRLPLRAVS
Sbjct: 1 MASQWQGMRTSVRRRSLLKEEQLEKKEVTRSAGGHPET--GPLGSLCRQFQRRLPLRAVS 58
Query: 284 LNLGAGPSWKRLETPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVXXXX 463
LNLG GPSWKRLE+PEP QQGLQAAARSAK+ALGAMSQR QESC SGTKWL+ETQV
Sbjct: 59 LNLGNGPSWKRLESPEPEQQGLQAAARSAKSALGAMSQRIQESCQSGTKWLMETQVKVRR 118
Query: 464 XXXXXXXXSSPLARSLS---------HRSSQLSGAAPACSTLGPWDXXXXXXXXXXXXXX 616
SP SLS +R +++ G +GP
Sbjct: 119 KRGAQKDRGSP-PPSLSQKNTRLCRANRDARVGGHLRLSGQMGP---HAHRRQRLRRESA 174
Query: 617 XXXXYSSAEPLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD 787
SS EPLCSPSESDSDLEPVGAGIQHLQKLSQ L+ AI AEESGDMTVSLIR+
Sbjct: 175 LRSPCSSTEPLCSPSESDSDLEPVGAGIQHLQKLSQRLDRAIKAEESGDMTVSLIRE 231
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,286,470
Number of extensions: 834978
Number of successful extensions: 3535
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3529
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 209
Effective length of database: 12,583,923
Effective search space: 2630039907
Effective search space used: 2630039907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004356
(930 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131927.1| PREDICTED: protein FAM64A-like isoform 2 [Su... 339 1e-93
Alignment gi|XP_003131926.1| PREDICTED: protein FAM64A-like isoform 1 [Su... 339 1e-93
>ref|XP_003131927.1| PREDICTED: protein FAM64A-like isoform 2 [Sus scrofa].
Length = 228
Score = 339 bits (869), Expect = 1e-93
Identities = 179/228 (78%), Positives = 179/228 (78%)
Frame = +2
Query: 104 MSSRWPSVGVSMXXXXXXXXXXXXXXXXXXPAVSHPDTSSGALGSLCRQFQRRLPLRAVS 283
MSSRWPSVGVSM PAVSHPDTSSGALGSLCRQFQRRLPLRAVS
Sbjct: 1 MSSRWPSVGVSMRRRSLQNQEQLEESEVLQPAVSHPDTSSGALGSLCRQFQRRLPLRAVS 60
Query: 284 LNLGAGPSWKRLETPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVXXXX 463
LNLGAGPSWKRLE PEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQV
Sbjct: 61 LNLGAGPSWKRLEIPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVKARR 120
Query: 464 XXXXXXXXSSPLARSLSHRSSQLSGAAPACSTLGPWDXXXXXXXXXXXXXXXXXXYSSAE 643
SSPLARSLSHRSSQLSGAAPACSTLGPWD YSSAE
Sbjct: 121 RKRGAQKGSSPLARSLSHRSSQLSGAAPACSTLGPWDPRAVPRRRSRREAAFRSPYSSAE 180
Query: 644 PLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD 787
PLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD
Sbjct: 181 PLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD 228
>ref|XP_003131926.1| PREDICTED: protein FAM64A-like isoform 1 [Sus scrofa].
Length = 228
Score = 339 bits (869), Expect = 1e-93
Identities = 179/228 (78%), Positives = 179/228 (78%)
Frame = +2
Query: 104 MSSRWPSVGVSMXXXXXXXXXXXXXXXXXXPAVSHPDTSSGALGSLCRQFQRRLPLRAVS 283
MSSRWPSVGVSM PAVSHPDTSSGALGSLCRQFQRRLPLRAVS
Sbjct: 1 MSSRWPSVGVSMRRRSLQNQEQLEESEVLQPAVSHPDTSSGALGSLCRQFQRRLPLRAVS 60
Query: 284 LNLGAGPSWKRLETPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVXXXX 463
LNLGAGPSWKRLE PEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQV
Sbjct: 61 LNLGAGPSWKRLEIPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVKARR 120
Query: 464 XXXXXXXXSSPLARSLSHRSSQLSGAAPACSTLGPWDXXXXXXXXXXXXXXXXXXYSSAE 643
SSPLARSLSHRSSQLSGAAPACSTLGPWD YSSAE
Sbjct: 121 RKRGAQKGSSPLARSLSHRSSQLSGAAPACSTLGPWDPRAVPRRRSRREAAFRSPYSSAE 180
Query: 644 PLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD 787
PLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD
Sbjct: 181 PLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD 228
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,944,964
Number of extensions: 665143
Number of successful extensions: 3300
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3285
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 211
Effective length of database: 8,879,129
Effective search space: 1873496219
Effective search space used: 1873496219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004356
(930 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 644 0.0
Sscrofa_Chr10 68 9e-09
>Sscrofa_Chr12
|| Length = 63588571
Score = 644 bits (325), Expect = 0.0
Identities = 328/329 (99%)
Strand = Plus / Minus
Query: 69 ggtctgctgggcaggacagactctcggccaggcagatgtcttctcggtggccaagcgtgg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52901104 ggtctgctgggcaggacagactctcggccaggcagatgtcttctcggtggccaagcgtgg 52901045
Query: 129 gggtctccatgcgtcggagatctctccagaaccaggagcagctggaggagagcgaggtcc 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52901044 gggtctccatgcgtcggagatctctccagaaccaggagcagctggaggagagcgaggtcc 52900985
Query: 189 tacagcctgcagtcagccacccggatacctccagtggggccttgggatccctctgcagac 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52900984 tacagcctgcagtcagccacccggatacctccagtggggccttgggatccctctgcagac 52900925
Query: 249 agttccaaaggaggctgcccctgagagcagtcagcctcaaccttggggcaggcccctcct 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52900924 agttccaaaggaggctgcccctgagagcagtcagcctcaaccttggggcaggcccctcct 52900865
Query: 309 ggaaacgcctggaaactccagaaccagggcagcagggcctccaggctgcagctcgctcag 368
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52900864 ggaaacgcctggaaattccagaaccagggcagcagggcctccaggctgcagctcgctcag 52900805
Query: 369 ctaagaacgccttgggtgccatgtctcag 397
|||||||||||||||||||||||||||||
Sbjct: 52900804 ctaagaacgccttgggtgccatgtctcag 52900776
Score = 521 bits (263), Expect = e-145
Identities = 269/271 (99%)
Strand = Plus / Minus
Query: 390 tgtctcagagattccaggagtcctgccacagcggcactaagtggctggtggaaacccagg 449
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52899436 tgtcacagagattccaggagtcctgccacagcggcactaagtggctggtggaaacccagg 52899377
Query: 450 tgaaggccaggaggaggaagagaggggcccaaaagggcagtagtcccctggctcgcagcc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52899376 tgaaggccaggaggaggaagagaggggcccaaaagggcagtagtcccctggctcgcagcc 52899317
Query: 510 tgagccacaggagcagccagctgtccggggccgcccctgcctgctccaccctgggaccct 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52899316 tgagccacaggagcagccagctgtccggggccgcccctgcctgctccaccctgggaccct 52899257
Query: 570 gggaccctcgggccgtccctcggcggcggtccaggagagaggccgccttccggagcccct 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52899256 gggaccctcgggccgtccctcggcggcggtccaggagagaggccgccttccggagcccct 52899197
Query: 630 attcctcggcagagcccctctgctcccccag 660
||||||| |||||||||||||||||||||||
Sbjct: 52899196 attcctcagcagagcccctctgctcccccag 52899166
Score = 335 bits (169), Expect = 3e-89
Identities = 176/177 (99%), Gaps = 1/177 (0%)
Strand = Plus / Minus
Query: 755 agtggcgacatgactgtttctctcattcgtgactgaggacggtgcccttcaggtaagcac 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52897974 agtggcgacatgactgtttctctcattcgtgactgaggacggtgcccttcaggtaagcac 52897915
Query: 815 ctttctccatgtcgtcctcctcccggccccgcatgagcacgtaggcatactcagaagcat 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52897914 ctttctccatgtcgtcctcctcccggccccgcatgagcacgtaggcatactcagaagcat 52897855
Query: 875 gtgaaagagctgagtcttttct-ggaaaaaaccacagagcacgggccgcgcagagca 930
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 52897854 gtgaaagagctgagtcttttctgggaaaaaaccacagagcacgggccgcgcagagca 52897798
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 658 cagtgagtctgacagtgatctagagcctgtgggggcagggatccagcatctccagaaact 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52898704 cagtgagtctgacagtgatctagagcctgtgggggcagggatccagcatctccagaaact 52898645
Query: 718 ctcccaagagctggaagaggccatcgtggctgaggagag 756
|||||||||||||||||||||||||||||||||||||||
Sbjct: 52898644 ctcccaagagctggaagaggccatcgtggctgaggagag 52898606
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 1 gtttcaaatcggatgggtgggcgaggagcagctgtgctcagcgtcgggtcagcgttggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52901701 gtttcaaatcggatgggtgggcgaggagcagctgtgctcagcgtcgggtcagcgttggac 52901642
Query: 61 gctgctgcg 69
|||||||||
Sbjct: 52901641 gctgctgcg 52901633
>Sscrofa_Chr10
|| Length = 79102373
Score = 67.9 bits (34), Expect = 9e-09
Identities = 102/125 (81%), Gaps = 6/125 (4%)
Strand = Plus / Minus
Query: 85 cagactctcggccaggcagatgtcttctcggtggccaagcgtgggggtctccatgcgtcg 144
|||||||| |||||| |||||| ||||| |||| | ||||| || |||||||||||
Sbjct: 16061901 cagactctaggccagacagatggcttcttggtgactgggcgtgatggcctccatgcgtca 16061842
Query: 145 gagatctctccagaaccaggagcagctggaggagagcgaggtcctacagcctgcagtcag 204
|||||||||||||||| || |||||||||||| |||| || |||||||||||| |
Sbjct: 16061841 gagatctctccagaac------cacctggaggagagcaaggttctgcagcctgcagtcgg 16061788
Query: 205 ccacc 209
|||||
Sbjct: 16061787 ccacc 16061783
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,499,274
Number of extensions: 282
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 6
Length of query: 930
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 909
Effective length of database: 2,808,413,156
Effective search space: 2552847558804
Effective search space used: 2552847558804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)