Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004357
(1036 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091561.1| probable U3 small nucleolar RNA-associated p... 379 e-105
>ref|NP_001091561.1| probable U3 small nucleolar RNA-associated protein 11 [Bos taurus].
Length = 253
Score = 379 bits (974), Expect = e-105
Identities = 194/234 (82%), Positives = 203/234 (86%)
Frame = +3
Query: 219 ASPAFENIWACWKKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV 398
+ P F +KKKDYKLRADDYR KQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV
Sbjct: 20 SQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV 79
Query: 399 HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF 578
HVIKETKEEVTPEQLKLMRTQD+KYIEMKRVAEAKKIERLK+ELHLLDFQGKQQNKHVFF
Sbjct: 80 HVIKETKEEVTPEQLKLMRTQDIKYIEMKRVAEAKKIERLKAELHLLDFQGKQQNKHVFF 139
Query: 579 FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKQKVKGVNHKNRLKRIAKEIQKQY 758
FDTKKEVEQFDIATHLRT PELVDRVFNRPTIETLQK+KVKGVN++ RLKRIAKE QKQY
Sbjct: 140 FDTKKEVEQFDIATHLRTVPELVDRVFNRPTIETLQKEKVKGVNNQTRLKRIAKERQKQY 199
Query: 759 NCLMQRIEREKKLFVIAQKIQTXXXXXXXXXXXXXXXXXVNSPAIYKFESRRKR 920
+CL QRIERE+KLFVIAQKIQT VNSPAIYKFESRRKR
Sbjct: 200 DCLTQRIERERKLFVIAQKIQTRKDLLDKTQKVKVKKETVNSPAIYKFESRRKR 253
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,370,532
Number of extensions: 884520
Number of successful extensions: 3088
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3078
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004357
(1036 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532552.1| PREDICTED: similar to Probable U3 small nucleol... 375 e-104
>ref|XP_532552.1| PREDICTED: similar to Probable U3 small nucleolar RNA-associated
protein 11 (U3 snoRNA-associated protein 11) [Canis
familiaris].
Length = 253
Score = 375 bits (962), Expect = e-104
Identities = 193/234 (82%), Positives = 200/234 (85%)
Frame = +3
Query: 219 ASPAFENIWACWKKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV 398
+ P F +KKKDYKLRADDYR KQ+YLRALRKKALEKNPDEFYYKMTRVKLQDGV
Sbjct: 20 SQPGFRKHLGLLEKKKDYKLRADDYRKKQDYLRALRKKALEKNPDEFYYKMTRVKLQDGV 79
Query: 399 HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF 578
HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAE KKIERLKSELHLLDFQGKQ+NKH FF
Sbjct: 80 HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEVKKIERLKSELHLLDFQGKQKNKHTFF 139
Query: 579 FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKQKVKGVNHKNRLKRIAKEIQKQY 758
FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQK+KVKGV + RLKRIAKE QKQY
Sbjct: 140 FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKEKVKGVTQQIRLKRIAKERQKQY 199
Query: 759 NCLMQRIEREKKLFVIAQKIQTXXXXXXXXXXXXXXXXXVNSPAIYKFESRRKR 920
NCL QRIEREKKLFVIAQKIQT VNSPAIYKF+SRRKR
Sbjct: 200 NCLTQRIEREKKLFVIAQKIQTRKDLLDKTQKVKVKKQTVNSPAIYKFQSRRKR 253
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,955,060
Number of extensions: 918123
Number of successful extensions: 3429
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3422
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004357
(1036 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057121.2| probable U3 small nucleolar RNA-associated prot... 374 e-103
>ref|NP_057121.2| probable U3 small nucleolar RNA-associated protein 11 [Homo
sapiens].
Length = 253
Score = 374 bits (959), Expect = e-103
Identities = 191/234 (81%), Positives = 201/234 (85%)
Frame = +3
Query: 219 ASPAFENIWACWKKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV 398
+ P F +KKKDYKLRADDYR KQEYL+ALRKKALEKNPDEFYYKMTRVKLQDGV
Sbjct: 20 SQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRVKLQDGV 79
Query: 399 HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF 578
H+IKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF
Sbjct: 80 HIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF 139
Query: 579 FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKQKVKGVNHKNRLKRIAKEIQKQY 758
FDTKKEVEQFD+ATHL+TAPELVDRVFNRP IETLQK+KVKGV ++ LKRIAKE QKQY
Sbjct: 140 FDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIAKERQKQY 199
Query: 759 NCLMQRIEREKKLFVIAQKIQTXXXXXXXXXXXXXXXXXVNSPAIYKFESRRKR 920
NCL QRIEREKKLFVIAQKIQT VNSPAIYKF+SRRKR
Sbjct: 200 NCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNSPAIYKFQSRRKR 253
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,282,637
Number of extensions: 898001
Number of successful extensions: 3193
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3179
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004357
(1036 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080307.1| probable U3 small nucleolar RNA-associated prot... 345 4e-95
>ref|NP_080307.1| probable U3 small nucleolar RNA-associated protein 11 [Mus
musculus].
Length = 253
Score = 345 bits (884), Expect = 4e-95
Identities = 173/234 (73%), Positives = 193/234 (82%)
Frame = +3
Query: 219 ASPAFENIWACWKKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV 398
+ P F +KKKDYKLRA+DY KQ++LRALRKKALEKNPDEFYYKMTR KLQDGV
Sbjct: 20 SQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTRAKLQDGV 79
Query: 399 HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF 578
H+ KE KEEVT EQLKLMRTQD+KYIEMKRVAEAKKIERLKSELHLLDFQGKQQ KHVFF
Sbjct: 80 HIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQQKKHVFF 139
Query: 579 FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKQKVKGVNHKNRLKRIAKEIQKQY 758
FDTKKEVE+FD+ATHL+TAPELVDRV+NRP IETLQK++VKG + LKRIAKE QKQY
Sbjct: 140 FDTKKEVERFDVATHLQTAPELVDRVYNRPRIETLQKERVKGATPQTGLKRIAKERQKQY 199
Query: 759 NCLMQRIEREKKLFVIAQKIQTXXXXXXXXXXXXXXXXXVNSPAIYKFESRRKR 920
+CL QRIEREK+LFV+AQKIQT VNSPAIY+F++RRKR
Sbjct: 200 DCLTQRIEREKQLFVVAQKIQTRKDLMDKTQKVKVKKETVNSPAIYRFQTRRKR 253
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,925,660
Number of extensions: 760365
Number of successful extensions: 2695
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2688
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004357
(1036 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127847.2| PREDICTED: probable U3 small nucleolar RNA-a... 399 e-111
Alignment gi|XP_003127844.2| PREDICTED: probable U3 small nucleolar RNA-a... 318 2e-87
>ref|XP_003127847.2| PREDICTED: probable U3 small nucleolar RNA-associated protein
11-like [Sus scrofa].
Length = 253
Score = 399 bits (1026), Expect = e-111
Identities = 205/234 (87%), Positives = 208/234 (88%)
Frame = +3
Query: 219 ASPAFENIWACWKKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV 398
+ P+F +KKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV
Sbjct: 20 SQPSFRKHLGLLEKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV 79
Query: 399 HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF 578
HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF
Sbjct: 80 HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF 139
Query: 579 FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKQKVKGVNHKNRLKRIAKEIQKQY 758
FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKQKVKGVNHKNRLKRIAKE QKQY
Sbjct: 140 FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKQKVKGVNHKNRLKRIAKERQKQY 199
Query: 759 NCLMQRIEREKKLFVIAQKIQTXXXXXXXXXXXXXXXXXVNSPAIYKFESRRKR 920
NCLMQRIEREKKLFVIAQKIQT VNSPAIYKFESRRKR
Sbjct: 200 NCLMQRIEREKKLFVIAQKIQTRKDLLDKTRKVKVKKETVNSPAIYKFESRRKR 253
>ref|XP_003127844.2| PREDICTED: probable U3 small nucleolar RNA-associated protein
11-like [Sus scrofa].
Length = 229
Score = 318 bits (816), Expect = 2e-87
Identities = 159/170 (93%), Positives = 162/170 (95%)
Frame = +3
Query: 219 ASPAFENIWACWKKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV 398
+ P+F +KKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV
Sbjct: 20 SQPSFRKHLGLLEKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGV 79
Query: 399 HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF 578
HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF
Sbjct: 80 HVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFF 139
Query: 579 FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKQKVKGVNHKNRLK 728
FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKQKVKGVNHKNRLK
Sbjct: 140 FDTKKEVEQFDIATHLRTAPELVDRVFNRPTIETLQKQKVKGVNHKNRLK 189
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,731,448
Number of extensions: 567723
Number of successful extensions: 2143
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2138
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004357
(1036 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 442 e-121
>Sscrofa_Chr06
|| Length = 157765593
Score = 442 bits (223), Expect = e-121
Identities = 223/223 (100%)
Strand = Plus / Plus
Query: 1 gtacttcctgaagggcaggctctggatacgctgccgagaagaagtaggcggtcctaagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86764248 gtacttcctgaagggcaggctctggatacgctgccgagaagaagtaggcggtcctaagcc 86764307
Query: 61 gccggcggcttggcctatttccggtaggatctgtagaaacggcggctgatccggtgagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86764308 gccggcggcttggcctatttccggtaggatctgtagaaacggcggctgatccggtgagga 86764367
Query: 121 acctgtgttgcctactgcgctgttccagaagcgagccgacatggcggcggcttttcggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86764368 acctgtgttgcctactgcgctgttccagaagcgagccgacatggcggcggcttttcggaa 86764427
Query: 181 ggcggctaaatcccggcagcgggaacaccgagagcgaagccag 223
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86764428 ggcggctaaatcccggcagcgggaacaccgagagcgaagccag 86764470
Score = 353 bits (178), Expect = 1e-94
Identities = 194/198 (97%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 839 ggataaaactcggaaggtgaaggtgaagaaagaaacagtgaactccccagccatttataa 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86776960 ggataaaactcggaaggtgaaggtgaagaaagaaacagtgaactccccagccatttataa 86777019
Query: 899 atttgaaagtcgtcgcaaacgttgaagggttatggataagccttgtcattccacatggaa 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86777020 atttgaaagtcgtcgcaaacgttgaagggttatggataagccttgtcattccacatggaa 86777079
Query: 959 aaaagttttgtttcttttccagtaacttcaaagtccattggcttaaataactgggttttc 1018
|| || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 86777080 aagag-tttgtttcttttccagtaacttcaaagtccattggcttaaattacttggttttc 86777138
Query: 1019 ctgcttgtagctaattta 1036
||||||||||||||||||
Sbjct: 86777139 ctgcttgtagctaattta 86777156
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 596 agttgaacagtttgatattgcaactcacctgcgaacagccccagaactagtcgacagagt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86773278 agttgaacagtttgatattgcaactcacctgcgaacagccccagaactagtcgacagagt 86773337
Query: 656 cttcaacagacccacaatagagactttgcagaagcagaaagtgaaaggagttaaccataa 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86773338 cttcaacagacccacaatagagactttgcagaagcagaaagtgaaaggagttaaccataa 86773397
Query: 716 gaatcgacttaag 728
|||||||||||||
Sbjct: 86773398 gaatcgacttaag 86773410
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 388 aggatggagttcatgttattaaggagactaaggaagaagtaactccagaacaactgaaac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86771817 aggatggagttcatgttattaaggagactaaggaagaagtaactccagaacaactgaaac 86771876
Query: 448 taatgagaactcaggatgtcaaatacatagaaatgaaaagggttgcagaagccaag 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86771877 taatgagaactcaggatgtcaaatacatagaaatgaaaagggttgcagaagccaag 86771932
Score = 218 bits (110), Expect = 5e-54
Identities = 113/114 (99%)
Strand = Plus / Plus
Query: 727 agcggatagccaaagagatacaaaagcagtataactgcctgatgcagcggattgagcgcg 786
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 86776149 agcggatagccaaagagagacaaaagcagtataactgcctgatgcagcggattgagcgcg 86776208
Query: 787 agaagaaattattcgttattgcacagaaaattcagactcgcaaagatcttctgg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86776209 agaagaaattattcgttattgcacagaaaattcagactcgcaaagatcttctgg 86776262
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 502 agaaaatcgaaagactaaaatcagagctccatctgctggatttccaggggaagcaacaga 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86773084 agaaaatcgaaagactaaaatcagagctccatctgctggatttccaggggaagcaacaga 86773143
Query: 562 ataagcatgtgttcttttttgacaccaaaaaggaag 597
||||||||||||||||||||||||||||||||||||
Sbjct: 86773144 ataagcatgtgttcttttttgacaccaaaaaggaag 86773179
Score = 165 bits (83), Expect = 6e-38
Identities = 97/104 (93%)
Strand = Plus / Plus
Query: 287 tgactaccggcataagcaagaatacctcagagccctccggaaaaaggctcttgnnnnnnn 346
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86771336 tgactaccggcataagcaagaatacctcagagccctccggaaaaaggctcttgaaaaaaa 86771395
Query: 347 tccagatgaattctactataaaatgactcgggttaaactccagg 390
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86771396 tccagatgaattctactataaaatgactcgggttaaactccagg 86771439
Score = 71.9 bits (36), Expect = 7e-10
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 222 agcccagctttcgaaaacatctgggcctgctggnnnnnnnngaaagattacaaacttcgt 281
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 86770064 agcccagctttcgaaaacatctgggcctgctgg-aaaaaaagaaagattacaaacttcgt 86770122
Query: 282 gcaga 286
|||||
Sbjct: 86770123 gcaga 86770127
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,098,617
Number of extensions: 343
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 8
Length of query: 1036
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1015
Effective length of database: 2,808,413,156
Effective search space: 2850539353340
Effective search space used: 2850539353340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)