Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004361
(1170 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095307.1| ATP-binding cassette sub-family A member 9 [... 371 e-103
Alignment gi|XP_002696271.1| PREDICTED: hCG2039659-like [Bos taurus]. 314 1e-85
Alignment gi|XP_617513.4| PREDICTED: hCG2039659-like [Bos taurus]. 314 1e-85
Alignment gi|XP_002696270.1| PREDICTED: ATP-binding cassette, sub-family ... 306 2e-83
Alignment gi|XP_001789517.1| PREDICTED: ATP-binding cassette, sub-family ... 306 2e-83
Alignment gi|XP_002696269.1| PREDICTED: ATP-binding cassette, sub-family ... 223 3e-58
Alignment gi|XP_587636.3| PREDICTED: ATP-binding cassette, sub-family A (... 223 3e-58
Alignment gi|XP_002685611.1| PREDICTED: ATP-binding cassette, sub-family ... 115 7e-26
Alignment gi|XP_601044.4| PREDICTED: ATP binding cassette, sub-family A (... 113 3e-25
Alignment gi|NP_001192634.1| ATP-binding cassette sub-family A member 7 [... 111 1e-24
>ref|NP_001095307.1| ATP-binding cassette sub-family A member 9 [Bos taurus].
Length = 1581
Score = 371 bits (952), Expect = e-103
Identities = 203/372 (54%), Positives = 241/372 (64%), Gaps = 2/372 (0%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFIFR G+KNSGIWSF F ++T ++ ++ L+ LIP TLIG +
Sbjct: 1127 SFIFRHGRKNSGIWSFFFLVVTFFTIVANYLNEYGFLGLFLCTILIPPFTLIGVQLIFSE 1186
Query: 183 FS--MFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRR 356
S YL + + +L LIP+LHF FLFILRCLE KF K MRKDP FRISPR
Sbjct: 1187 ISPDSVDYLGASEQQVA-YLTLLIPYLHFFIFLFILRCLEMKFRKKPMRKDPVFRISPRS 1245
Query: 357 SDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXX 536
S V N VQ ERRRTADA+ + + +EKP I+ASCLRKEY G
Sbjct: 1246 SAVFANPEKPEGEDEDVQTERRRTADAVAAPDAEEKPAIVASCLRKEYAGRKKNCFAKRK 1305
Query: 537 XXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGFL 716
+A R+VSFCV+KGEV+GLLGHNGAGKST+IK+ITGDT+PTAGQVLL G S G P GFL
Sbjct: 1306 KKVATRNVSFCVKKGEVIGLLGHNGAGKSTTIKMITGDTRPTAGQVLLAGGSGGVPPGFL 1365
Query: 717 GYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEG 896
GYCPQE+ALWP LTV+EHLEV LKLQDQ+ LP KAL EG
Sbjct: 1366 GYCPQESALWPGLTVREHLEVSAAVKGLQRADAAAAITRLADALKLQDQMALPAKALPEG 1425
Query: 897 IKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAE 1076
KRKL FALSILG+P ++LLDEP+TGMDPEGQ Q WQ IRA+++ +GA H + AE
Sbjct: 1426 AKRKLSFALSILGSPGLLLLDEPTTGMDPEGQLQTWQLIRASVRNTARGALLTTH-SMAE 1484
Query: 1077 AEARWDRVGLMV 1112
AEA DRV +MV
Sbjct: 1485 AEAVCDRVAVMV 1496
Score = 96.7 bits (239), Expect = 4e-20
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Frame = +3
Query: 570 VRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF------LGYCPQ 731
V +G++ G+LGH+GAGK+T + +++G + PT+G V + S + G CPQ
Sbjct: 508 VYEGQITGILGHSGAGKTTLLNILSGLSAPTSGSVTIYNHSLSEAADLEHISKLTGVCPQ 567
Query: 732 ENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKL 911
N + LTV+E+L +F L++ + + + LS G KRKL
Sbjct: 568 ANVQFGFLTVRENLRLFAKIKGIQPHEVEQQVQRVLQDLEMGNIQDVLAQNLSSGQKRKL 627
Query: 912 CFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKH 1034
F +ILG+P V+LLDEP+ G DP + ++W +R H
Sbjct: 628 TFGTAILGDPRVLLLDEPTAGSDPLSRHRVWNLLRERKSDH 668
>ref|XP_002696271.1| PREDICTED: hCG2039659-like [Bos taurus].
Length = 1625
Score = 314 bits (804), Expect = 1e-85
Identities = 178/380 (46%), Positives = 232/380 (61%), Gaps = 10/380 (2%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYL-FLVF 179
+FIFRK +KNSG+WSFCF ++T++A ++ S L L P ATLIG++ FL
Sbjct: 1118 AFIFRKRRKNSGLWSFCFYVVTVIAFGIIVLFGSGVPVLIPCMALAPSATLIGFIAFLQE 1177
Query: 180 HFSMFYYLDEESR---TIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISP 350
++ +E+ + FLV LIP+ + F+F+LRCLE K GK M+KDP FRISP
Sbjct: 1178 RIHRYWIKYQEANYDLSAADFLVCLIPYFQALLFMFVLRCLEAKCGKKIMQKDPVFRISP 1237
Query: 351 RRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXX 530
+ D N VQ ER RTA ALN T+ +EKPVIIASCL KEY G
Sbjct: 1238 QSRDARSNAEEPIGEDEDVQAERIRTATALN-TSIEEKPVIIASCLHKEYAGQKKRCFSR 1296
Query: 531 XXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKG-----SSR 695
A R+VSFCV+KGE+LGLLG NGAGKS+S+++I+G PTAG+V L G +
Sbjct: 1297 RRKKTAVRNVSFCVKKGEILGLLGPNGAGKSSSVRMISGMMTPTAGEVELTGYGSDPDQQ 1356
Query: 696 GD-PLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKL 872
GD + FLGYCPQEN LWPSLT +EHLEVF +L +QL +
Sbjct: 1357 GDISIRFLGYCPQENVLWPSLTTREHLEVFAAVKGLRRADAHMAISRLVDAFRLHEQLDV 1416
Query: 873 PTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS 1052
P + LS G RKLCF LS+LG+P ++LLDEPSTG+DP Q+Q+WQ ++ ++ +GA
Sbjct: 1417 PVQKLSGGAARKLCFVLSLLGDPPILLLDEPSTGLDPAEQKQLWQTVQRAVRNTARGALL 1476
Query: 1053 *PHTTWAEAEARWDRVGLMV 1112
H + AEAEA DRV +MV
Sbjct: 1477 TTH-SMAEAEAVCDRVAIMV 1495
Score = 99.4 bits (246), Expect = 6e-21
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 6/159 (3%)
Frame = +3
Query: 558 VSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF------LG 719
+SF + +G++ +LGH+GAGKS +++++G + PTAG V + + + G
Sbjct: 501 LSFDIYEGQITAVLGHSGAGKSALLRILSGSSVPTAGSVTIYNKNLSEMQDLEEIRKITG 560
Query: 720 YCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGI 899
CPQ N + +LTVKE+L +F L +Q+ LSEG
Sbjct: 561 VCPQFNVQFDTLTVKENLRLFAKIKGIQPKDVEQEVQRVLLELDIQNIQDNLATLLSEGQ 620
Query: 900 KRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIR 1016
KRKL +++LG+P V+LLDEP+ G+DP + ++W +R
Sbjct: 621 KRKLTIGIALLGDPQVLLLDEPTAGLDPFSRHRIWNFLR 659
>ref|XP_617513.4| PREDICTED: hCG2039659-like [Bos taurus].
Length = 1614
Score = 314 bits (804), Expect = 1e-85
Identities = 178/380 (46%), Positives = 232/380 (61%), Gaps = 10/380 (2%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYL-FLVF 179
+FIFRK +KNSG+WSFCF ++T++A ++ S L L P ATLIG++ FL
Sbjct: 1118 AFIFRKRRKNSGLWSFCFYVVTVIAFGIIVLFGSGVPVLIPCMALAPSATLIGFIAFLQE 1177
Query: 180 HFSMFYYLDEESR---TIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISP 350
++ +E+ + FLV LIP+ + F+F+LRCLE K GK M+KDP FRISP
Sbjct: 1178 RIHRYWIKYQEANYDLSAADFLVCLIPYFQALLFMFVLRCLEAKCGKKIMQKDPVFRISP 1237
Query: 351 RRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXX 530
+ D N VQ ER RTA ALN T+ +EKPVIIASCL KEY G
Sbjct: 1238 QSRDARSNAEEPIGEDEDVQAERIRTATALN-TSIEEKPVIIASCLHKEYAGQKKRCFSR 1296
Query: 531 XXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKG-----SSR 695
A R+VSFCV+KGE+LGLLG NGAGKS+S+++I+G PTAG+V L G +
Sbjct: 1297 RRKKTAVRNVSFCVKKGEILGLLGPNGAGKSSSVRMISGMMTPTAGEVELTGYGSDPDQQ 1356
Query: 696 GD-PLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKL 872
GD + FLGYCPQEN LWPSLT +EHLEVF +L +QL +
Sbjct: 1357 GDISIRFLGYCPQENVLWPSLTTREHLEVFAAVKGLRRADAHMAISRLVDAFRLHEQLDV 1416
Query: 873 PTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS 1052
P + LS G RKLCF LS+LG+P ++LLDEPSTG+DP Q+Q+WQ ++ ++ +GA
Sbjct: 1417 PVQKLSGGAARKLCFVLSLLGDPPILLLDEPSTGLDPAEQKQLWQTVQRAVRNTARGALL 1476
Query: 1053 *PHTTWAEAEARWDRVGLMV 1112
H + AEAEA DRV +MV
Sbjct: 1477 TTH-SMAEAEAVCDRVAIMV 1495
Score = 99.4 bits (246), Expect = 6e-21
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 6/159 (3%)
Frame = +3
Query: 558 VSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF------LG 719
+SF + +G++ +LGH+GAGKS +++++G + PTAG V + + + G
Sbjct: 501 LSFDIYEGQITAVLGHSGAGKSALLRILSGSSVPTAGSVTIYNKNLSEMQDLEEIRKITG 560
Query: 720 YCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGI 899
CPQ N + +LTVKE+L +F L +Q+ LSEG
Sbjct: 561 VCPQFNVQFDTLTVKENLRLFAKIKGIQPKDVEQEVQRVLLELDIQNIQDNLATLLSEGQ 620
Query: 900 KRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIR 1016
KRKL +++LG+P V+LLDEP+ G+DP + ++W +R
Sbjct: 621 KRKLTIGIALLGDPQVLLLDEPTAGLDPFSRHRIWNFLR 659
>ref|XP_002696270.1| PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 9-like,
partial [Bos taurus].
Length = 1540
Score = 306 bits (785), Expect = 2e-83
Identities = 174/357 (48%), Positives = 220/357 (61%), Gaps = 2/357 (0%)
Frame = +3
Query: 48 FCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFHFSMFYYLDEESRTIE 227
F F I+ + ++ +F +S + A ++ A+ L L+ + F +
Sbjct: 1062 FYFGILVSIHLMYYIFLESTIVLQFMFALVVCVASCAACLILLTYVISFLFPSGRKNNGF 1121
Query: 228 PFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNXXXXXXXXXXV 407
L +P+L I FLFI+RCLE K+GK +MRKDPFFRISPRR + PN V
Sbjct: 1122 WSLSFFLPYLQIIVFLFIIRCLEMKYGKETMRKDPFFRISPRRGEYRPNPEEPEEEDEDV 1181
Query: 408 QMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEV 587
Q ER +TA+AL +++ DEKPVI+ASCL KEY A R+VSFC+ KGEV
Sbjct: 1182 QTERVKTANALTASSLDEKPVIMASCLHKEYKQEKKRCFSARKTKTAVRNVSFCINKGEV 1241
Query: 588 LGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF--LGYCPQENALWPSLTV 761
LGLLGHNGAGKST IK+ITGDTKPTAG V RG GF LGYCPQE+ LWP LTV
Sbjct: 1242 LGLLGHNGAGKSTCIKMITGDTKPTAGVV------RGAGGGFRHLGYCPQEDVLWPDLTV 1295
Query: 762 KEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNP 941
+EHL+++ LKLQDQ+ LP KAL EG KRKL FALS+LG+P
Sbjct: 1296 REHLDLYSAVKGLTKEEAALSVSRLADALKLQDQMALPAKALPEGAKRKLSFALSVLGSP 1355
Query: 942 SVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAEARWDRVGLMV 1112
+++LLDEP+TGMDPEGQ QMWQAI+A ++ +GA H + AEAEA DRV +MV
Sbjct: 1356 ALLLLDEPTTGMDPEGQLQMWQAIQAIVKSSARGALLTTH-SMAEAEAVCDRVAIMV 1411
Score = 95.5 bits (236), Expect = 8e-20
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Frame = +3
Query: 444 STNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKS 623
S F K I LRKEY G A + + V +G++ +LGH+GAGKS
Sbjct: 493 SPEFHRKEAIRIRNLRKEYKGKPEKVE-------ALQGICLDVYEGQLTAILGHSGAGKS 545
Query: 624 TSIKVITGDTKPTAGQVLLKGSSRGDPLG------FLGYCPQENALWPSLTVKEHLEVFX 785
+ + ++ G + T G + + + + + G+CPQ N + LTV+E+L +F
Sbjct: 546 SLLSILGGWSACTEGSATIYNTQLSEIINMEEIRNYTGFCPQFNIYFDFLTVRENLRLFA 605
Query: 786 XXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEP 965
L + + + K LS G KRKL F ++ILG+P V+LLDEP
Sbjct: 606 KIKGIPPKEVEQEVKSIMMELDMHNIQDVIAKELSGGQKRKLTFGIAILGDPQVLLLDEP 665
Query: 966 STGMDPEGQQQMWQAIRATLQKH 1034
+ G+DP + +W ++ H
Sbjct: 666 TAGLDPFSRHLVWNFLKERKTNH 688
>ref|XP_001789517.1| PREDICTED: ATP-binding cassette, sub-family A, member 9 [Bos taurus].
Length = 1484
Score = 306 bits (785), Expect = 2e-83
Identities = 174/357 (48%), Positives = 220/357 (61%), Gaps = 2/357 (0%)
Frame = +3
Query: 48 FCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFHFSMFYYLDEESRTIE 227
F F I+ + ++ +F +S + A ++ A+ L L+ + F +
Sbjct: 1006 FYFGILVSIHLMYYIFLESTIVLQFMFALVVCVASCAACLILLTYVISFLFPSGRKNNGF 1065
Query: 228 PFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNXXXXXXXXXXV 407
L +P+L I FLFI+RCLE K+GK +MRKDPFFRISPRR + PN V
Sbjct: 1066 WSLSFFLPYLQIIVFLFIIRCLEMKYGKETMRKDPFFRISPRRGEYRPNPEEPEEEDEDV 1125
Query: 408 QMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEV 587
Q ER +TA+AL +++ DEKPVI+ASCL KEY A R+VSFC+ KGEV
Sbjct: 1126 QTERVKTANALTASSLDEKPVIMASCLHKEYKQEKKRCFSARKTKTAVRNVSFCINKGEV 1185
Query: 588 LGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF--LGYCPQENALWPSLTV 761
LGLLGHNGAGKST IK+ITGDTKPTAG V RG GF LGYCPQE+ LWP LTV
Sbjct: 1186 LGLLGHNGAGKSTCIKMITGDTKPTAGVV------RGAGGGFRHLGYCPQEDVLWPDLTV 1239
Query: 762 KEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNP 941
+EHL+++ LKLQDQ+ LP KAL EG KRKL FALS+LG+P
Sbjct: 1240 REHLDLYSAVKGLTKEEAALSVSRLADALKLQDQMALPAKALPEGAKRKLSFALSVLGSP 1299
Query: 942 SVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAEARWDRVGLMV 1112
+++LLDEP+TGMDPEGQ QMWQAI+A ++ +GA H + AEAEA DRV +MV
Sbjct: 1300 ALLLLDEPTTGMDPEGQLQMWQAIQAIVKSSARGALLTTH-SMAEAEAVCDRVAIMV 1355
Score = 95.5 bits (236), Expect = 8e-20
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Frame = +3
Query: 444 STNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKS 623
S F K I LRKEY G A + + V +G++ +LGH+GAGKS
Sbjct: 437 SPEFHRKEAIRIRNLRKEYKGKPEKVE-------ALQGICLDVYEGQLTAILGHSGAGKS 489
Query: 624 TSIKVITGDTKPTAGQVLLKGSSRGDPLG------FLGYCPQENALWPSLTVKEHLEVFX 785
+ + ++ G + T G + + + + + G+CPQ N + LTV+E+L +F
Sbjct: 490 SLLSILGGWSACTEGSATIYNTQLSEIINMEEIRNYTGFCPQFNIYFDFLTVRENLRLFA 549
Query: 786 XXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEP 965
L + + + K LS G KRKL F ++ILG+P V+LLDEP
Sbjct: 550 KIKGIPPKEVEQEVKSIMMELDMHNIQDVIAKELSGGQKRKLTFGIAILGDPQVLLLDEP 609
Query: 966 STGMDPEGQQQMWQAIRATLQKH 1034
+ G+DP + +W ++ H
Sbjct: 610 TAGLDPFSRHLVWNFLKERKTNH 632
>ref|XP_002696269.1| PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 5,
partial [Bos taurus].
Length = 1609
Score = 223 bits (567), Expect = 3e-58
Identities = 143/389 (36%), Positives = 206/389 (52%), Gaps = 19/389 (4%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITI--LAVLGLLFDDSEHSAL---YAVAFLIPQATLIGYL 167
SF F+K WSF + + + +AV + + + + Y +P L+G L
Sbjct: 1124 SFTFKKIANTKEFWSFIYSVTALACIAVTEITYFMGNTATIILHYIFCITVPIYPLLGCL 1183
Query: 168 FLVFHFSMFYYLDEESRTIEPF---LVSLI-PFLHFITFLFILRCLEWKFGKTSMRKDPF 335
+ F + L T +P+ LV++I P+LH + ++F+L+ E K+G S+RKDPF
Sbjct: 1184 -IGFIKITWKNLQRNEDTYDPWDSLLVAVISPYLHCVLWVFLLQYYEKKYGGRSLRKDPF 1242
Query: 336 FRI-----SPRRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEY 500
FR R+ PN V+ ER + + ++ +EKP I+ + L KEY
Sbjct: 1243 FRTLSTKSKHRKFSEPPNNEDEDED---VKAERLKVKELMSCQCCEEKPAIMVNNLHKEY 1299
Query: 501 TGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLL 680
+A ++VSFCV+KGE+LGLLG NGAGKST I ++ GD +PT+GQV L
Sbjct: 1300 EDKKDFLPTRKVKKVANKYVSFCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFL 1359
Query: 681 KGSS-----RGDPLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXX 845
S D + +GYCPQ N LW +T++EHL+++
Sbjct: 1360 GDYSPHPAEDDDSVRCMGYCPQINPLWRDITLQEHLQIYGAVKGMRASDVQEVTDRITNA 1419
Query: 846 LKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATL 1025
L L++ L+ K L GI+RKLCFALS+LGNP V LLDEPSTGMDP+ +Q MW+AIR
Sbjct: 1420 LDLKEHLQKTVKKLPAGIRRKLCFALSMLGNPPVTLLDEPSTGMDPKAKQHMWRAIRTAF 1479
Query: 1026 QKHEKGAPS*PHTTWAEAEARWDRVGLMV 1112
+ ++ A H EAEA DRV +MV
Sbjct: 1480 KNRKRAAILTTH-YMEEAEAVCDRVAIMV 1507
Score = 89.4 bits (220), Expect = 6e-18
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGS--SRGDPL---- 707
A R +SF + +G++ LLGH+G GKST + ++ G P+ G + G S D +
Sbjct: 496 ALRSLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSEGFASIYGHRVSEIDEMFEAR 555
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+G CPQ + + LTV+E+L + L +Q K L
Sbjct: 556 KMIGICPQLDIHFDVLTVEENLSILASIKGIPANDVIQEVQRVLLDLDMQAVKDNQAKKL 615
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEK 1040
S G KRKL +++LGNP V+LLDEP+ GMDP + +W L KH K
Sbjct: 616 SGGQKRKLSLGIAVLGNPKVLLLDEPTAGMDPCSRHIVW-----NLLKHRK 661
>ref|XP_587636.3| PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 5 [Bos
taurus].
Length = 1562
Score = 223 bits (567), Expect = 3e-58
Identities = 143/389 (36%), Positives = 206/389 (52%), Gaps = 19/389 (4%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITI--LAVLGLLFDDSEHSAL---YAVAFLIPQATLIGYL 167
SF F+K WSF + + + +AV + + + + Y +P L+G L
Sbjct: 1124 SFTFKKIANTKEFWSFIYSVTALACIAVTEITYFMGNTATIILHYIFCITVPIYPLLGCL 1183
Query: 168 FLVFHFSMFYYLDEESRTIEPF---LVSLI-PFLHFITFLFILRCLEWKFGKTSMRKDPF 335
+ F + L T +P+ LV++I P+LH + ++F+L+ E K+G S+RKDPF
Sbjct: 1184 -IGFIKITWKNLQRNEDTYDPWDSLLVAVISPYLHCVLWVFLLQYYEKKYGGRSLRKDPF 1242
Query: 336 FRI-----SPRRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEY 500
FR R+ PN V+ ER + + ++ +EKP I+ + L KEY
Sbjct: 1243 FRTLSTKSKHRKFSEPPNNEDEDED---VKAERLKVKELMSCQCCEEKPAIMVNNLHKEY 1299
Query: 501 TGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLL 680
+A ++VSFCV+KGE+LGLLG NGAGKST I ++ GD +PT+GQV L
Sbjct: 1300 EDKKDFLPTRKVKKVANKYVSFCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFL 1359
Query: 681 KGSS-----RGDPLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXX 845
S D + +GYCPQ N LW +T++EHL+++
Sbjct: 1360 GDYSPHPAEDDDSVRCMGYCPQINPLWRDITLQEHLQIYGAVKGMRASDVQEVTDRITNA 1419
Query: 846 LKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATL 1025
L L++ L+ K L GI+RKLCFALS+LGNP V LLDEPSTGMDP+ +Q MW+AIR
Sbjct: 1420 LDLKEHLQKTVKKLPAGIRRKLCFALSMLGNPPVTLLDEPSTGMDPKAKQHMWRAIRTAF 1479
Query: 1026 QKHEKGAPS*PHTTWAEAEARWDRVGLMV 1112
+ ++ A H EAEA DRV +MV
Sbjct: 1480 KNRKRAAILTTH-YMEEAEAVCDRVAIMV 1507
Score = 89.4 bits (220), Expect = 6e-18
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGS--SRGDPL---- 707
A R +SF + +G++ LLGH+G GKST + ++ G P+ G + G S D +
Sbjct: 496 ALRSLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSEGFASIYGHRVSEIDEMFEAR 555
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+G CPQ + + LTV+E+L + L +Q K L
Sbjct: 556 KMIGICPQLDIHFDVLTVEENLSILASIKGIPANDVIQEVQRVLLDLDMQAVKDNQAKKL 615
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEK 1040
S G KRKL +++LGNP V+LLDEP+ GMDP + +W L KH K
Sbjct: 616 SGGQKRKLSLGIAVLGNPKVLLLDEPTAGMDPCSRHIVW-----NLLKHRK 661
>ref|XP_002685611.1| PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 12 [Bos
taurus].
Length = 2593
Score = 115 bits (288), Expect = 7e-26
Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG-----DPL 707
IA ++S + GE GLLG NGAGK+T K++TGD PT+G +L++ +
Sbjct: 2271 IAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPTSGNILIRNKTGSLAHVNSHS 2330
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+GYCPQE+AL +T++EHL + L L T
Sbjct: 2331 SLVGYCPQEDALDDLVTIEEHLYFYARVHGIPEKDIKETVQKLLGRLHLMPYRDKVTSMC 2390
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTT 1067
S G KRKL AL+++G PS++LLDEPS+GMDP+ ++ +W+ I +Q K + +
Sbjct: 2391 SYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWKIISEEVQ--NKCSVILTSHS 2448
Query: 1068 WAEAEARWDRVGLMV 1112
E EA R+ +MV
Sbjct: 2449 MEECEALCTRLAIMV 2463
Score = 79.7 bits (195), Expect = 5e-15
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF--- 713
IA +++ +G + LLG NGAGK+T+I ++TG +AG + + G L
Sbjct: 1359 IAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIRTDLHVVRK 1418
Query: 714 -LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTK--- 881
+G C Q + L+ LT KEHL ++ +L +++K K
Sbjct: 1419 NMGVCMQHDVLFSYLTTKEHLLLYGSIKVPHWTKK-----------QLHEEVKRTLKDTG 1467
Query: 882 ----------ALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
LS G+KRKL +++++G VV+LDEPSTG+DP ++ +W I
Sbjct: 1468 LYSHRHKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI 1521
>ref|XP_601044.4| PREDICTED: ATP binding cassette, sub-family A (ABC1), member 13 [Bos
taurus].
Length = 5340
Score = 113 bits (283), Expect = 3e-25
Identities = 70/198 (35%), Positives = 105/198 (53%), Gaps = 9/198 (4%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF---- 713
A + +S VR+GE GLLG NGAGK+T+ K++TGD P++G +++ + G+ +
Sbjct: 5019 AVQDISLGVRRGECFGLLGVNGAGKTTTFKMLTGDLPPSSGHAVVR-TPTGEDVNLSLAG 5077
Query: 714 -----LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPT 878
+GYCPQ++AL LT EHL + L L+ + P
Sbjct: 5078 AAGIRIGYCPQQDALDELLTGWEHLHYYCCLHGIPKQSIPKVAGDLVRRLHLEAHVDKPV 5137
Query: 879 KALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*P 1058
S G KRKL AL++LG P ++LLDEPS+GMDP ++ +W+A+R + E A
Sbjct: 5138 ATYSGGTKRKLSTALALLGKPDLLLLDEPSSGMDPCSKRHLWEALRK--EAEEGCAVVLS 5195
Query: 1059 HTTWAEAEARWDRVGLMV 1112
+ E EA R+ +MV
Sbjct: 5196 SHSMEECEAVCTRLAIMV 5213
Score = 74.7 bits (182), Expect = 1e-13
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Frame = +3
Query: 576 KGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSS-RGDPL---GFLGYCPQENAL 743
+ ++ LLG NGAGK+T I ++TG PT+G + + G S + DP LG C Q + L
Sbjct: 4113 RDQITALLGTNGAGKTTVISLLTGLYPPTSGTITVNGRSLQKDPSVVRAELGVCLQWDIL 4172
Query: 744 WPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLP-----TKALSEGIKRK 908
+ LTV EHL +F LQD P + LS G +RK
Sbjct: 4173 FDRLTVLEHLMLFASLKALRGTRQELREQVHRT---LQDVGLTPHQHQQARVLSGGTRRK 4229
Query: 909 LCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
L ++ LG V+LDEP++G+DP ++ +W +
Sbjct: 4230 LSIGIAFLGASGTVVLDEPTSGVDPCSRRGIWDIL 4264
>ref|NP_001192634.1| ATP-binding cassette sub-family A member 7 [Bos taurus].
Length = 2149
Score = 111 bits (278), Expect(2) = 1e-24
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 4/182 (2%)
Frame = +3
Query: 579 GEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG-DPLGF---LGYCPQENALW 746
GE GLLG NGAGK+++ +++TGDT P+ G+ +L+G S +P +GYCPQ +A++
Sbjct: 1826 GECFGLLGVNGAGKTSTFRMVTGDTLPSGGEAILEGHSVAQEPAAAHRRMGYCPQSDAIF 1885
Query: 747 PSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALS 926
LT +EHLE++ L L P S G KRKL A++
Sbjct: 1886 ELLTGREHLELYARLRGVPEAQVAQTASYGLARLGLSQYADQPAGTYSGGNKRKLATAVA 1945
Query: 927 ILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAEARWDRVGL 1106
++G+P++V LDEP+TGMDP ++ +W ++ A +Q+ + + E EA R+ +
Sbjct: 1946 LVGDPALVFLDEPTTGMDPGARRFLWNSLLAVVQEGRSVVLT--SHSMEECEALCTRLAI 2003
Query: 1107 MV 1112
MV
Sbjct: 2004 MV 2005
Score = 20.8 bits (42), Expect(2) = 1e-24
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +2
Query: 1133 IGAIHHLKNQFG 1168
+G++ HLK +FG
Sbjct: 2012 LGSVQHLKGRFG 2023
Score = 86.7 bits (213), Expect = 4e-17
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 5/183 (2%)
Frame = +3
Query: 576 KGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPL----GFLGYCPQENAL 743
+G + LGHNGAGK+T++ +++G PTAG + G + LG CPQ N L
Sbjct: 829 QGHITAFLGHNGAGKTTTMSILSGLFPPTAGSASVLGHDVRTSMVAIRPCLGVCPQYNVL 888
Query: 744 WPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFAL 923
+ LTV EH+ + + L + T LS G++RKL A+
Sbjct: 889 FDLLTVDEHIWFYGRLKGLSAAAVGPEQDRLLQDMGLIPKRHAQTHHLSGGMQRKLSVAI 948
Query: 924 SILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWA-EAEARWDRV 1100
+ +G VV+LDEP+ G+DP ++ +W+ L K+ +G T EAE DRV
Sbjct: 949 AFVGGSQVVILDEPTAGVDPTSRRGIWE----LLLKYREGRTLILSTHHLDEAELLGDRV 1004
Query: 1101 GLM 1109
++
Sbjct: 1005 AVV 1007
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,903,321
Number of extensions: 1365062
Number of successful extensions: 10043
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 9604
Number of HSP's successfully gapped: 54
Length of query: 390
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,240,222
Effective search space: 4072703492
Effective search space used: 4072703492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004361
(1170 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548020.2| PREDICTED: similar to ATP-binding cassette, sub... 486 e-137
Alignment gi|XP_853718.1| PREDICTED: similar to ATP-binding cassette, sub... 404 e-113
Alignment gi|XP_850922.1| PREDICTED: similar to ATP-binding cassette, sub... 322 6e-88
Alignment gi|XP_537574.1| PREDICTED: similar to ATP-binding cassette, sub... 244 1e-64
Alignment gi|XP_862847.1| PREDICTED: similar to ATP-binding cassette, sub... 232 4e-61
Alignment gi|XP_862750.1| PREDICTED: similar to ATP-binding cassette, sub... 232 4e-61
Alignment gi|XP_537573.2| PREDICTED: similar to ATP-binding cassette, sub... 232 4e-61
Alignment gi|XP_862773.1| PREDICTED: similar to ATP-binding cassette, sub... 212 6e-55
Alignment gi|XP_547099.2| PREDICTED: similar to ATP-binding cassette tran... 117 2e-26
Alignment gi|XP_536058.2| PREDICTED: similar to ATP-binding cassette, sub... 113 4e-25
>ref|XP_548020.2| PREDICTED: similar to ATP-binding cassette, sub-family A member 8
[Canis familiaris].
Length = 1622
Score = 486 bits (1252), Expect = e-137
Identities = 256/370 (69%), Positives = 276/370 (74%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFIFRKGK+NSGIWSF FC+IT +V LLFD EH ALY + FL+PQ TLIG + F
Sbjct: 1125 SFIFRKGKRNSGIWSFGFCMITAFSVFILLFDYHEHVALYCLIFLVPQTTLIGCMVFYFI 1184
Query: 183 FSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSD 362
+M YY +E R++ PFLV LIPFLHFI FLF LRCLEWK+GK SMR+DPFFRISPR +D
Sbjct: 1185 QAMAYYTTQEPRSVGPFLVFLIPFLHFIIFLFTLRCLEWKYGKKSMRRDPFFRISPRSND 1244
Query: 363 VCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXX 542
VC N VQMER RTADALNSTN DEKPVIIASCLRKEY+G
Sbjct: 1245 VCQNPEALEGEDEDVQMERVRTADALNSTNSDEKPVIIASCLRKEYSGKRKYCSSKRKKK 1304
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGFLGY 722
IA R+VSFCVRKGEVLGLLGHNGAGKSTSI+VITGDTKPTAGQVLLKGSS LGFLGY
Sbjct: 1305 IATRNVSFCVRKGEVLGLLGHNGAGKSTSIQVITGDTKPTAGQVLLKGSSGDGSLGFLGY 1364
Query: 723 CPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIK 902
CPQEN LWP+LTVKEHLEVF LKLQDQLKLP K LSEGIK
Sbjct: 1365 CPQENVLWPNLTVKEHLEVFAAVKGLKKADAAVTISRLADALKLQDQLKLPVKTLSEGIK 1424
Query: 903 RKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAE 1082
RKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRAT + E+GA H AEAE
Sbjct: 1425 RKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTH-YMAEAE 1483
Query: 1083 ARWDRVGLMV 1112
A DRV +MV
Sbjct: 1484 AVCDRVAIMV 1493
Score = 100 bits (248), Expect = 3e-21
Identities = 62/194 (31%), Positives = 95/194 (48%), Gaps = 6/194 (3%)
Frame = +3
Query: 453 FDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSI 632
F K I + KEY G A + + F + +G++ +LGH+GAGKST +
Sbjct: 474 FHGKEAIRIRNVTKEYKGKPDKIE-------ALKDLVFDIYEGQITAILGHSGAGKSTLL 526
Query: 633 KVITGDTKPTAGQVLLKGSSRGDPLGF------LGYCPQENALWPSLTVKEHLEVFXXXX 794
+++G + PT G V + + + G CPQ N + LTVKE+L +F
Sbjct: 527 NILSGLSVPTKGSVTIYNNKLSEITDLENISQLTGICPQSNVQFDFLTVKENLRLFAKIK 586
Query: 795 XXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTG 974
L++++ + + LS G KRKL FA +ILG+P V LLDEP+ G
Sbjct: 587 GIRPHELDKEIQRILLELEMKNIQDVLAQNLSGGQKRKLSFATAILGDPQVFLLDEPTAG 646
Query: 975 MDPEGQQQMWQAIR 1016
+DP + Q+W +R
Sbjct: 647 LDPFSRHQVWNLLR 660
>ref|XP_853718.1| PREDICTED: similar to ATP-binding cassette, sub-family A, member 9
isoform a [Canis familiaris].
Length = 1625
Score = 404 bits (1039), Expect = e-113
Identities = 220/373 (58%), Positives = 251/373 (67%), Gaps = 3/373 (0%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFIFR G+KNSGIWSF F IITI +++ ++ L+ LIP TLIG L +
Sbjct: 1127 SFIFRNGRKNSGIWSFFFLIITIFSIVATDLNEYGFLGLFLCTILIPPFTLIGSLLIFSE 1186
Query: 183 FS---MFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPR 353
S M Y E + + FL LIP+LHF F+F+LRCLE F K SMRKDP FRISPR
Sbjct: 1187 ISPDSMDYLGASEQQIV--FLALLIPYLHFFIFVFVLRCLEVNFRKKSMRKDPVFRISPR 1244
Query: 354 RSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXX 533
S + PN V+ ERRRT +A +FDEKPVIIASCLRKEY G
Sbjct: 1245 SSSIFPNPEEPAGEGEDVEGERRRTTNAETLADFDEKPVIIASCLRKEYAGKKRNCFAKR 1304
Query: 534 XXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF 713
+A R+VSFCV+KGEV+GLLGHNGAGKST+IK+ITGDT PTAGQV+LKG+S GD L F
Sbjct: 1305 KKKVAIRNVSFCVKKGEVIGLLGHNGAGKSTTIKMITGDTNPTAGQVILKGNSEGDSLRF 1364
Query: 714 LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSE 893
LGYCPQEN LWP+L+V+EHLEVF LKLQDQ+KLP K LSE
Sbjct: 1365 LGYCPQENVLWPNLSVREHLEVFAAIKGLKKGDATVTITRLADALKLQDQMKLPVKTLSE 1424
Query: 894 GIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWA 1073
GIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQ IRAT E+GA H A
Sbjct: 1425 GIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQTIRATFGNTERGALLTTH-YMA 1483
Query: 1074 EAEARWDRVGLMV 1112
EAEA DRV +MV
Sbjct: 1484 EAEAVCDRVAIMV 1496
Score = 96.7 bits (239), Expect = 4e-20
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 6/197 (3%)
Frame = +3
Query: 444 STNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKS 623
S F K I L+KEY A + + F + +G++ LLGH+GAGK+
Sbjct: 472 SPEFHGKEAIRIRNLKKEYGKGNHEKVE------ALKGLVFDIYEGQITALLGHSGAGKT 525
Query: 624 TSIKVITGDTKPTAGQVLLKGSSRGDPLGF------LGYCPQENALWPSLTVKEHLEVFX 785
T + +++G + PT+G V + + + G CPQ N + LTVKE+L +F
Sbjct: 526 TLLNMLSGLSTPTSGSVTIYNHTLSEMTDLETVSKLTGVCPQSNVQFDFLTVKENLRLFA 585
Query: 786 XXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEP 965
L++++ + + LS G KRKL F ++ILG+P V+LLDEP
Sbjct: 586 KIKGIQSHEVEQEIQQVLRDLEMENIQDILAQNLSGGQKRKLTFGIAILGDPQVLLLDEP 645
Query: 966 STGMDPEGQQQMWQAIR 1016
+ G DP + ++W ++
Sbjct: 646 TAGSDPLSRHRVWNFLK 662
>ref|XP_850922.1| PREDICTED: similar to ATP-binding cassette, sub-family A, member 6
isoform a isoform 2 [Canis familiaris].
Length = 1621
Score = 322 bits (824), Expect = 6e-88
Identities = 182/378 (48%), Positives = 231/378 (61%), Gaps = 8/378 (2%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFIFRK +K+SG+WSFC I +I+ + ++ + L + L+P T+ G+L +
Sbjct: 1116 SFIFRKTRKSSGLWSFCIYITSII-IFDIVLMHFDLPVLISSMILVPFTTMGGFLAFLAQ 1174
Query: 183 FSMFYYLDEESRTIEP----FLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISP 350
+ + ++ + +P FLV LIP+L + F+FILRC+E K GK MRKDP FRISP
Sbjct: 1175 RTYEHQVEYLNHRYDPSGVDFLVCLIPYLQALIFVFILRCMETKCGKKIMRKDPIFRISP 1234
Query: 351 RRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXX 530
+ PN V+ ER R A AL ++ DEKPVIIASCL KEY G
Sbjct: 1235 QSGSAGPNPEEPVDEDEDVKAERLRAATALTTSQADEKPVIIASCLHKEYAGQKKSCFSK 1294
Query: 531 XXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKG---SSRGD 701
IA R++S CV+KGE+LGLLG NGAGKS+SI++I+G TKPTAG+V LKG +GD
Sbjct: 1295 RKKKIATRNLSLCVKKGEILGLLGPNGAGKSSSIRMISGITKPTAGEVELKGCRSGHQGD 1354
Query: 702 PL-GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPT 878
L FLGYCPQEN LWP+LTV+EHLEVF KL DQL +
Sbjct: 1355 SLVNFLGYCPQENVLWPNLTVREHLEVFAAVKGLRKGDATLAISRLVDSFKLHDQLNVQA 1414
Query: 879 KALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*P 1058
K L+ G RKLCF LSILGN ++LLDEPSTG DP GQQQMWQ I+A ++ EKGA
Sbjct: 1415 KKLTAGATRKLCFVLSILGNSPILLLDEPSTGTDPAGQQQMWQTIQAAVKNTEKGALLTT 1474
Query: 1059 HTTWAEAEARWDRVGLMV 1112
H AE EA DR+ +MV
Sbjct: 1475 HYL-AEVEAICDRIAIMV 1491
Score = 102 bits (254), Expect = 7e-22
Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 6/203 (2%)
Frame = +3
Query: 453 FDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSI 632
F K VI ++KEYTG A + ++F + +G++ +LGH+GAGKS+ +
Sbjct: 471 FQGKEVIRIRNVKKEYTGKTGKMK-------ALKDLTFDIYEGQITAILGHSGAGKSSLL 523
Query: 633 KVITGDTKPTAGQVLLKGSSRGDPLGF------LGYCPQENALWPSLTVKEHLEVFXXXX 794
++ G PT G V + + + G CPQ N + LTVKE+L +F
Sbjct: 524 NILNGSFAPTEGSVTIYNKNLSEMQDLEEIRKITGICPQFNVQFDMLTVKENLRLFAKIK 583
Query: 795 XXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTG 974
L +Q+ L+EG KRKL F ++ILG+P ++LLDEP+ G
Sbjct: 584 GIQPHEVEQEVQRILLELNIQNIQDNLATHLTEGQKRKLTFGIAILGDPQILLLDEPTAG 643
Query: 975 MDPEGQQQMWQAIRATLQKHEKG 1043
+DP + ++W L++H+ G
Sbjct: 644 LDPFSRHRVWN----FLKEHKAG 662
>ref|XP_537574.1| PREDICTED: similar to ATP-binding cassette, sub-family A, member 6
isoform a isoform 1 [Canis familiaris].
Length = 404
Score = 244 bits (623), Expect = 1e-64
Identities = 137/262 (52%), Positives = 162/262 (61%), Gaps = 4/262 (1%)
Frame = +3
Query: 339 RISPRRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXX 518
RISP+ PN V+ ER R A AL ++ DEKPVIIASCL KEY G
Sbjct: 14 RISPQSGSAGPNPEEPVDEDEDVKAERLRAATALTTSQADEKPVIIASCLHKEYAGQKKS 73
Query: 519 XXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKG---S 689
IA R++S CV+KGE+LGLLG NGAGKS+SI++I+G TKPTAG+V LKG
Sbjct: 74 CFSKRKKKIATRNLSLCVKKGEILGLLGPNGAGKSSSIRMISGITKPTAGEVELKGCRSG 133
Query: 690 SRGDPL-GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQL 866
+GD L FLGYCPQEN LWP+LTV+EHLEVF KL DQL
Sbjct: 134 HQGDSLVNFLGYCPQENVLWPNLTVREHLEVFAAVKGLRKGDATLAISRLVDSFKLHDQL 193
Query: 867 KLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGA 1046
+ K L+ G RKLCF LSILGN ++LLDEPSTG DP GQQQMWQ I+A ++ EKGA
Sbjct: 194 NVQAKKLTAGATRKLCFVLSILGNSPILLLDEPSTGTDPAGQQQMWQTIQAAVKNTEKGA 253
Query: 1047 PS*PHTTWAEAEARWDRVGLMV 1112
H AE EA DR+ +MV
Sbjct: 254 LLTTHYL-AEVEAICDRIAIMV 274
>ref|XP_862847.1| PREDICTED: similar to ATP-binding cassette, sub-family A , member 5
isoform 6 [Canis familiaris].
Length = 705
Score = 232 bits (592), Expect = 4e-61
Identities = 147/390 (37%), Positives = 206/390 (52%), Gaps = 20/390 (5%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSF--------CFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLI 158
SF F+K WSF C I I +G H Y + +IP L+
Sbjct: 187 SFTFKKILNTKEFWSFIYSVTALACIAITEITFFMGYTVTAVLH---YTFSIVIPIYPLL 243
Query: 159 GYLFLVFHFSMFYYLDEESRTIEPF---LVSLI-PFLHFITFLFILRCLEWKFGKTSMRK 326
G L + F + + + + T P+ LV++I P+L + ++F+L+ E K+G S+RK
Sbjct: 244 GCL-ICFIKTSWKNIRKNEDTYNPWDRLLVAVISPYLQCVLWIFLLQYYEKKYGGRSIRK 302
Query: 327 DPFFRI--SPRRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEY 500
DPFFR S ++ P V+ ER + + ++ +EKP I+ S L KEY
Sbjct: 303 DPFFRTLSSKSKNRKHPEPPNHEDEDEDVKAERLKVKELMSCQCCEEKPAIMVSNLHKEY 362
Query: 501 TGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLL 680
+A ++VSFCV+KGE+LGLLG NGAGKST I ++ GD +PT+GQV L
Sbjct: 363 EDKKDFLLTRKVKKVATKYVSFCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFL 422
Query: 681 KGSSRGDP------LGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXX 842
G DP + ++GYCPQ N LWP +T++EH E++
Sbjct: 423 -GDYSSDPGEDDDSIKYMGYCPQINPLWPDITLREHFEIYGAVKGMSANDMKEVINRITS 481
Query: 843 XLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRAT 1022
L L++ L+ K L GIKRKLCFALS+LGNP + LLDEPSTGMDP+ +Q MW+AIR
Sbjct: 482 ALDLKEHLQKTIKKLPAGIKRKLCFALSMLGNPHITLLDEPSTGMDPKAKQHMWRAIRTA 541
Query: 1023 LQKHEKGAPS*PHTTWAEAEARWDRVGLMV 1112
+ ++ A H EAEA DRV +MV
Sbjct: 542 FKNKKRAAILTTH-YMEEAEAVCDRVAIMV 570
>ref|XP_862750.1| PREDICTED: similar to ATP-binding cassette, sub-family A , member 5
isoform 2 [Canis familiaris].
Length = 559
Score = 232 bits (592), Expect = 4e-61
Identities = 147/390 (37%), Positives = 206/390 (52%), Gaps = 20/390 (5%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSF--------CFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLI 158
SF F+K WSF C I I +G H Y + +IP L+
Sbjct: 41 SFTFKKILNTKEFWSFIYSVTALACIAITEITFFMGYTVTAVLH---YTFSIVIPIYPLL 97
Query: 159 GYLFLVFHFSMFYYLDEESRTIEPF---LVSLI-PFLHFITFLFILRCLEWKFGKTSMRK 326
G L + F + + + + T P+ LV++I P+L + ++F+L+ E K+G S+RK
Sbjct: 98 GCL-ICFIKTSWKNIRKNEDTYNPWDRLLVAVISPYLQCVLWIFLLQYYEKKYGGRSIRK 156
Query: 327 DPFFRI--SPRRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEY 500
DPFFR S ++ P V+ ER + + ++ +EKP I+ S L KEY
Sbjct: 157 DPFFRTLSSKSKNRKHPEPPNHEDEDEDVKAERLKVKELMSCQCCEEKPAIMVSNLHKEY 216
Query: 501 TGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLL 680
+A ++VSFCV+KGE+LGLLG NGAGKST I ++ GD +PT+GQV L
Sbjct: 217 EDKKDFLLTRKVKKVATKYVSFCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFL 276
Query: 681 KGSSRGDP------LGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXX 842
G DP + ++GYCPQ N LWP +T++EH E++
Sbjct: 277 -GDYSSDPGEDDDSIKYMGYCPQINPLWPDITLREHFEIYGAVKGMSANDMKEVINRITS 335
Query: 843 XLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRAT 1022
L L++ L+ K L GIKRKLCFALS+LGNP + LLDEPSTGMDP+ +Q MW+AIR
Sbjct: 336 ALDLKEHLQKTIKKLPAGIKRKLCFALSMLGNPHITLLDEPSTGMDPKAKQHMWRAIRTA 395
Query: 1023 LQKHEKGAPS*PHTTWAEAEARWDRVGLMV 1112
+ ++ A H EAEA DRV +MV
Sbjct: 396 FKNKKRAAILTTH-YMEEAEAVCDRVAIMV 424
>ref|XP_537573.2| PREDICTED: similar to ATP-binding cassette, sub-family A , member 5
isoform 1 [Canis familiaris].
Length = 1642
Score = 232 bits (592), Expect = 4e-61
Identities = 147/390 (37%), Positives = 206/390 (52%), Gaps = 20/390 (5%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSF--------CFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLI 158
SF F+K WSF C I I +G H Y + +IP L+
Sbjct: 1124 SFTFKKILNTKEFWSFIYSVTALACIAITEITFFMGYTVTAVLH---YTFSIVIPIYPLL 1180
Query: 159 GYLFLVFHFSMFYYLDEESRTIEPF---LVSLI-PFLHFITFLFILRCLEWKFGKTSMRK 326
G L + F + + + + T P+ LV++I P+L + ++F+L+ E K+G S+RK
Sbjct: 1181 GCL-ICFIKTSWKNIRKNEDTYNPWDRLLVAVISPYLQCVLWIFLLQYYEKKYGGRSIRK 1239
Query: 327 DPFFRI--SPRRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEY 500
DPFFR S ++ P V+ ER + + ++ +EKP I+ S L KEY
Sbjct: 1240 DPFFRTLSSKSKNRKHPEPPNHEDEDEDVKAERLKVKELMSCQCCEEKPAIMVSNLHKEY 1299
Query: 501 TGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLL 680
+A ++VSFCV+KGE+LGLLG NGAGKST I ++ GD +PT+GQV L
Sbjct: 1300 EDKKDFLLTRKVKKVATKYVSFCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFL 1359
Query: 681 KGSSRGDP------LGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXX 842
G DP + ++GYCPQ N LWP +T++EH E++
Sbjct: 1360 -GDYSSDPGEDDDSIKYMGYCPQINPLWPDITLREHFEIYGAVKGMSANDMKEVINRITS 1418
Query: 843 XLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRAT 1022
L L++ L+ K L GIKRKLCFALS+LGNP + LLDEPSTGMDP+ +Q MW+AIR
Sbjct: 1419 ALDLKEHLQKTIKKLPAGIKRKLCFALSMLGNPHITLLDEPSTGMDPKAKQHMWRAIRTA 1478
Query: 1023 LQKHEKGAPS*PHTTWAEAEARWDRVGLMV 1112
+ ++ A H EAEA DRV +MV
Sbjct: 1479 FKNKKRAAILTTH-YMEEAEAVCDRVAIMV 1507
Score = 88.2 bits (217), Expect = 1e-17
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGS--SRGDPL---- 707
A R +SF + +G++ LLGH+G GKST + ++ G P+ G + G S D +
Sbjct: 496 ALRSLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASIYGHRVSEIDEMFEAR 555
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+G CPQ + + LTV+E+L + L +Q K L
Sbjct: 556 KIIGICPQLDIHFDVLTVEENLSILASIKGIPANNVIQEVQKVLLDLDMQPIKDNQAKKL 615
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIR 1016
S G KRKL +++LGNP ++LLDEP+ GMDP + +W ++
Sbjct: 616 SGGQKRKLSLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNLLK 658
>ref|XP_862773.1| PREDICTED: similar to ATP-binding cassette, sub-family A , member 5
isoform 3 [Canis familiaris].
Length = 534
Score = 212 bits (539), Expect = 6e-55
Identities = 132/353 (37%), Positives = 186/353 (52%), Gaps = 20/353 (5%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSF--------CFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLI 158
SF F+K WSF C I I +G H Y + +IP L+
Sbjct: 187 SFTFKKILNTKEFWSFIYSVTALACIAITEITFFMGYTVTAVLH---YTFSIVIPIYPLL 243
Query: 159 GYLFLVFHFSMFYYLDEESRTIEPF---LVSLI-PFLHFITFLFILRCLEWKFGKTSMRK 326
G L + F + + + + T P+ LV++I P+L + ++F+L+ E K+G S+RK
Sbjct: 244 GCL-ICFIKTSWKNIRKNEDTYNPWDRLLVAVISPYLQCVLWIFLLQYYEKKYGGRSIRK 302
Query: 327 DPFFRI--SPRRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEY 500
DPFFR S ++ P V+ ER + + ++ +EKP I+ S L KEY
Sbjct: 303 DPFFRTLSSKSKNRKHPEPPNHEDEDEDVKAERLKVKELMSCQCCEEKPAIMVSNLHKEY 362
Query: 501 TGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLL 680
+A ++VSFCV+KGE+LGLLG NGAGKST I ++ GD +PT+GQV L
Sbjct: 363 EDKKDFLLTRKVKKVATKYVSFCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFL 422
Query: 681 KGSSRGDP------LGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXX 842
G DP + ++GYCPQ N LWP +T++EH E++
Sbjct: 423 -GDYSSDPGEDDDSIKYMGYCPQINPLWPDITLREHFEIYGAVKGMSANDMKEVINRITS 481
Query: 843 XLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQM 1001
L L++ L+ K L GIKRKLCFALS+LGNP + LLDEPSTGMDP+ +Q M
Sbjct: 482 ALDLKEHLQKTIKKLPAGIKRKLCFALSMLGNPHITLLDEPSTGMDPKAKQHM 534
>ref|XP_547099.2| PREDICTED: similar to ATP-binding cassette transporter sub-family A
member 15 [Canis familiaris].
Length = 1601
Score = 117 bits (293), Expect = 2e-26
Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 9/245 (3%)
Frame = +3
Query: 405 VQMERRRTADALNSTNFDEKPVIIASCLR-----KEYTGXXXXXXXXXXXXIAARHVSFC 569
++ E R+ D + S F+++PV + +R KE+T +A +++SF
Sbjct: 421 IKKEERQITDMIKSDYFEDEPVDLVVGIRIQNLYKEFT-------TERDTILAVKNLSFN 473
Query: 570 VRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF----LGYCPQEN 737
V +G++ LLG NGAGK+T++ ++TG T PT+G+V + G + LG+CPQ++
Sbjct: 474 VYEGQITVLLGPNGAGKTTTMSILTGLTLPTSGKVYINGYDISKDMNHVRNNLGFCPQDD 533
Query: 738 ALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCF 917
L+ LTV EHL + L ++ K+LS G+KRKL
Sbjct: 534 ILFAELTVSEHLYFYCVIKGVPPEIRPTEVNKMLTSFGLLEKHDAIAKSLSGGMKRKLSI 593
Query: 918 ALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAEARWDR 1097
++++G VV+LDEP++GMDP ++ W ++ KH++ H EA+ DR
Sbjct: 594 IIALIGGSKVVILDEPTSGMDPVSRRFTWNVLQQ--YKHDRTILLTTH-HMDEADVLGDR 650
Query: 1098 VGLMV 1112
+ +MV
Sbjct: 651 IAIMV 655
Score = 103 bits (256), Expect(2) = 4e-22
Identities = 74/256 (28%), Positives = 118/256 (46%), Gaps = 5/256 (1%)
Frame = +3
Query: 261 FITFLFILRCLEWKFGKTSMRKDPFFRISPR-RSDVCPNXXXXXXXXXXVQMERRRTADA 437
F +F+L WK +T + + FF I + D VQ ER R +
Sbjct: 1215 FFLLIFLLETTSWKV-RTFVYRYIFFEIYKKFNKDRVSKELSGESEDDDVQHERNRILE- 1272
Query: 438 LNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAG 617
+ ++ + L KE T +A R++S ++K E GLLG NGAG
Sbjct: 1273 ------QPRELLNFTVLIKELT----KIYFTYPAVLAVRNISLGIQKKECFGLLGLNGAG 1322
Query: 618 KSTSIKVITGDTKPTAGQVLLKGSSRGDPL----GFLGYCPQENALWPSLTVKEHLEVFX 785
K+T+ +++TG+ T+G V ++ S + L +GYCPQ +AL +T +E + ++
Sbjct: 1323 KTTTFEILTGEETATSGDVFIENLSITNNLLEVRSKIGYCPQFDALLDYMTARELMVMYA 1382
Query: 786 XXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEP 965
L L+ S G KR+L A++++G PSV+ LDEP
Sbjct: 1383 RLWGVPETQITQYVNKLLQSLNLEPYADKFIYTYSGGNKRRLSNAIALMGKPSVIFLDEP 1442
Query: 966 STGMDPEGQQQMWQAI 1013
STGMDPE ++ +W +
Sbjct: 1443 STGMDPEARRLLWNRV 1458
Score = 20.8 bits (42), Expect(2) = 4e-22
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 1133 IGAIHHLKNQFG 1168
+G+ HLKN+FG
Sbjct: 1496 LGSPQHLKNKFG 1507
>ref|XP_536058.2| PREDICTED: similar to ATP-binding cassette, sub-family A, member 12
(ATP-binding cassette transporter 12) (ATP-binding
cassette 12) isoform 1 [Canis familiaris].
Length = 2594
Score = 113 bits (282), Expect(2) = 4e-25
Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG-----DPL 707
IA ++S + GE GLLG NGAGK+T K++TGD P++G +L++ +
Sbjct: 2270 IAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVDSHS 2329
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+GYCPQE+AL ++V+EHL + L L T
Sbjct: 2330 SLVGYCPQEDALDDLVSVEEHLYFYARIHGIPEKDIKETVHKLLRRLHLMPYKDRATSLC 2389
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTT 1067
S G KRKL AL+++G PS++LLDEPS+GMDP+ ++ +W+ I +Q K + +
Sbjct: 2390 SYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWKIISEEVQ--NKCSVILTSHS 2447
Query: 1068 WAEAEARWDRVGLMV 1112
E EA R+ +MV
Sbjct: 2448 MEECEALCTRLAIMV 2462
Score = 20.8 bits (42), Expect(2) = 4e-25
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 1133 IGAIHHLKNQFG 1168
IG++ H+K++FG
Sbjct: 2469 IGSLQHIKSRFG 2480
Score = 82.4 bits (202), Expect = 8e-16
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF--- 713
IA H++ +G + LLG NGAGK+T+I ++TG +AG + + G L
Sbjct: 1358 IAVDHLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDLKTDLHTVRK 1417
Query: 714 -LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTK--- 881
+G C Q + L+ LT KEHL ++ +L +++K K
Sbjct: 1418 NMGVCMQHDVLFSYLTTKEHLLLYGSIKVPHWTKK-----------QLHEEVKRTLKDTG 1466
Query: 882 ----------ALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
LS G+KRKL +++++G VV+LDEPSTG+DP ++ +W I
Sbjct: 1467 LYSHRHKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI 1520
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,911,250
Number of extensions: 1408305
Number of successful extensions: 10101
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 9666
Number of HSP's successfully gapped: 55
Length of query: 390
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 285
Effective length of database: 15,374,224
Effective search space: 4381653840
Effective search space used: 4381653840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004361
(1170 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009099.1| ATP-binding cassette sub-family A member 8 [Hom... 474 e-134
Alignment gi|NP_525022.2| ATP-binding cassette sub-family A member 9 [Hom... 404 e-113
Alignment gi|NP_525021.3| ATP-binding cassette sub-family A member 10 [Ho... 349 3e-96
Alignment gi|NP_525023.2| ATP-binding cassette sub-family A member 6 [Hom... 327 1e-89
Alignment gi|NP_061142.2| ATP-binding cassette sub-family A member 5 [Hom... 228 8e-60
Alignment gi|NP_758424.1| ATP-binding cassette sub-family A member 5 [Hom... 228 8e-60
Alignment gi|NP_775099.2| ATP-binding cassette sub-family A member 12 iso... 114 2e-25
Alignment gi|NP_056472.2| ATP-binding cassette sub-family A member 12 iso... 114 2e-25
Alignment gi|NP_997698.1| ATP-binding cassette sub-family A member 2 isof... 107 1e-24
Alignment gi|NP_001597.2| ATP-binding cassette sub-family A member 2 isof... 107 1e-24
>ref|NP_009099.1| ATP-binding cassette sub-family A member 8 [Homo sapiens].
Length = 1581
Score = 474 bits (1219), Expect = e-134
Identities = 249/370 (67%), Positives = 267/370 (72%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFIFRKG+KNSGIWSFCF ++T+ +V G F E + FLIP AT+IG LFL H
Sbjct: 1084 SFIFRKGRKNSGIWSFCFYVVTVFSVAGFAFSIFESDIPFIFTFLIPPATMIGCLFLSSH 1143
Query: 183 FSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSD 362
EE ++PFLV LIPFLHFI FLF LRCLEWKFGK SMRKDPFFRISPR SD
Sbjct: 1144 LLFSSLFSEERMDVQPFLVFLIPFLHFIIFLFTLRCLEWKFGKKSMRKDPFFRISPRSSD 1203
Query: 363 VCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXX 542
VC N VQMER RTA+ALNSTNFDEKPVIIASCLRKEY G
Sbjct: 1204 VCQNPEEPEGEDEDVQMERVRTANALNSTNFDEKPVIIASCLRKEYAGKRKGCFSKRKNK 1263
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGFLGY 722
IA R+VSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGS GD L FLGY
Sbjct: 1264 IATRNVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSGGGDALEFLGY 1323
Query: 723 CPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIK 902
CPQENALWP+LTV++HLEV+ LKLQDQLK P K LSEGIK
Sbjct: 1324 CPQENALWPNLTVRQHLEVYAAVKGLRKGDAEVAITRLVDALKLQDQLKSPVKTLSEGIK 1383
Query: 903 RKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAE 1082
RKLCF LSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRAT + E+GA H AEAE
Sbjct: 1384 RKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFRNTERGALLTTH-YMAEAE 1442
Query: 1083 ARWDRVGLMV 1112
A DRV +MV
Sbjct: 1443 AVCDRVAIMV 1452
Score = 62.0 bits (149), Expect = 1e-09
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 6/194 (3%)
Frame = +3
Query: 453 FDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSI 632
F K I + KEY G A + + F + +G++ +LGH+GAGKST +
Sbjct: 474 FQGKEAIRIRNVTKEYKGKPDKIE-------ALKDLVFDIYEGQITAILGHSGAGKSTLL 526
Query: 633 KVITGDTKPTAGQVLLKGSSRGDPLG------FLGYCPQENALWPSLTVKEHLEVFXXXX 794
+++G + PT G V + + + G CPQ N + LTV+E+L +F
Sbjct: 527 NILSGLSVPTKGSVTIYNNKLSEMADLENLSKLTGVCPQSNVQFDFLTVRENLRLFAKIK 586
Query: 795 XXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTG 974
LP + E + LLDEP+ G
Sbjct: 587 GI-----------------------LPQEVDKE-----------------IFLLDEPTAG 606
Query: 975 MDPEGQQQMWQAIR 1016
+DP + Q+W ++
Sbjct: 607 LDPFSRHQVWNLLK 620
>ref|NP_525022.2| ATP-binding cassette sub-family A member 9 [Homo sapiens].
Length = 1624
Score = 404 bits (1039), Expect = e-113
Identities = 219/373 (58%), Positives = 252/373 (67%), Gaps = 3/373 (0%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFIFR G+KNSGIWSF F I+ I +++ ++ L+ LIP TLIG LF+
Sbjct: 1126 SFIFRNGRKNSGIWSFFFLIVVIFSIVATDLNEYGFLGLFFGTMLIPPFTLIGSLFIFSE 1185
Query: 183 FS---MFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPR 353
S M Y ES + +L LIP+LHF+ FLFILRCLE K MRKDP FRISPR
Sbjct: 1186 ISPDSMDYLGASESEIV--YLALLIPYLHFLIFLFILRCLEMNCRKKLMRKDPVFRISPR 1243
Query: 354 RSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXX 533
+ + PN +QMER RT +A+ +FDE PVIIASCLRKEY G
Sbjct: 1244 SNAIFPNPEEPEGEEEDIQMERMRTVNAMAVRDFDETPVIIASCLRKEYAGKKKNCFSKR 1303
Query: 534 XXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF 713
IA R+VSFCV+KGEV+GLLGHNGAGKST+IK+ITGDTKPTAGQV+LKGS G+PLGF
Sbjct: 1304 KKKIATRNVSFCVKKGEVIGLLGHNGAGKSTTIKMITGDTKPTAGQVILKGSGGGEPLGF 1363
Query: 714 LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSE 893
LGYCPQENALWP+LTV++HLEV+ LKLQDQLK P K LSE
Sbjct: 1364 LGYCPQENALWPNLTVRQHLEVYAAVKGLRKGDAMIAITRLVDALKLQDQLKAPVKTLSE 1423
Query: 894 GIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWA 1073
GIKRKLCF LSILGNPSVVLLDEPSTGMDPEGQQQMWQ IRAT + E+GA H A
Sbjct: 1424 GIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQVIRATFRNTERGALLTTH-YMA 1482
Query: 1074 EAEARWDRVGLMV 1112
EAEA DRV +MV
Sbjct: 1483 EAEAVCDRVAIMV 1495
Score = 103 bits (256), Expect = 4e-22
Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 6/197 (3%)
Frame = +3
Query: 444 STNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKS 623
S F K I L+KEY G A + V F + +G++ LLGH+GAGK+
Sbjct: 472 SPEFCGKEAIRIKNLKKEYAGKCERVE-------ALKGVVFDIYEGQITALLGHSGAGKT 524
Query: 624 TSIKVITGDTKPTAGQV------LLKGSSRGDPLGFLGYCPQENALWPSLTVKEHLEVFX 785
T + +++G + PT+G V L + + + F G+CPQ N + LTVKE+L +F
Sbjct: 525 TLLNILSGLSVPTSGSVTVYNHTLSRMADIENISKFTGFCPQSNVQFGFLTVKENLRLFA 584
Query: 786 XXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEP 965
L++++ + + LS G RKL F ++ILG+P V+LLDEP
Sbjct: 585 KIKGILPHEVEKEVQRVVQELEMENIQDILAQNLSGGQNRKLTFGIAILGDPQVLLLDEP 644
Query: 966 STGMDPEGQQQMWQAIR 1016
+ G+DP + ++W ++
Sbjct: 645 TAGLDPLSRHRIWNLLK 661
>ref|NP_525021.3| ATP-binding cassette sub-family A member 10 [Homo sapiens].
Length = 1543
Score = 349 bits (895), Expect = 3e-96
Identities = 197/383 (51%), Positives = 237/383 (61%), Gaps = 13/383 (3%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFIFRK +KN+G WSF F II I ++ E L IP TL+GY+ L+
Sbjct: 1035 SFIFRKWRKNNGFWSFGFFIILICVSTIMVSTQYEKLNLILCMIFIPSFTLLGYVMLLIQ 1094
Query: 183 FSMFYYLD-------EESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFR 341
LD E ++TI L +LIP+L + FLF++RCLE K+G M KDP FR
Sbjct: 1095 LDFMRNLDSLDNRINEVNKTI--LLTTLIPYLQSVIFLFVIRCLEMKYGNEIMNKDPVFR 1152
Query: 342 ISPRRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXX 521
ISPR + PN VQ ER + A+AL + N +E+PVI ASCL KEY
Sbjct: 1153 ISPRSRETHPNPEEPEEEDEDVQAERVQAANALTAPNLEEEPVITASCLHKEYYETKKSC 1212
Query: 522 XXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGS---- 689
IA R+VSFCV+KGEVLGLLGHNGAGKSTSIK+ITG TKPTAG V+L+GS
Sbjct: 1213 FSTRKKKIAIRNVSFCVKKGEVLGLLGHNGAGKSTSIKMITGCTKPTAGVVVLQGSRASV 1272
Query: 690 --SRGDPLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQ 863
+ L FLGYCPQEN+LWP LT+KEHLE++ LKLQ+Q
Sbjct: 1273 RQQHDNSLKFLGYCPQENSLWPKLTMKEHLELYAAVKGLGKEDAALSISRLVEALKLQEQ 1332
Query: 864 LKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKG 1043
LK P K LSEGIKRKLCF LSILGNPSVVLLDEP TGMDPEGQQQMWQ ++AT++ E+G
Sbjct: 1333 LKAPVKTLSEGIKRKLCFVLSILGNPSVVLLDEPFTGMDPEGQQQMWQILQATVKNKERG 1392
Query: 1044 APS*PHTTWAEAEARWDRVGLMV 1112
H +EAEA DR+ +MV
Sbjct: 1393 TLLTTH-YMSEAEAVCDRMAMMV 1414
Score = 97.1 bits (240), Expect = 3e-20
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 6/197 (3%)
Frame = +3
Query: 444 STNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKS 623
S F K I + KEY G A + + F + +G++ +LGHNGAGKS
Sbjct: 382 SPEFHGKEAIRIRNVIKEYNGKTGKVE-------ALQGIFFDIYEGQITAILGHNGAGKS 434
Query: 624 TSIKVITGDTKPTAGQVLLKGSSRGDPLGF------LGYCPQENALWPSLTVKEHLEVFX 785
T + +++G + T G + + + +G+CPQ N + LTV+E+L VF
Sbjct: 435 TLLNILSGLSVSTEGSATIYNTQLSEITDMEEIRKNIGFCPQFNFQFDFLTVRENLRVFA 494
Query: 786 XXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEP 965
L +Q + K LS G KRKL ++ILG+P V+LLDEP
Sbjct: 495 KIKGIQPKEVEQEVKRIIMELDMQSIQDIIAKKLSGGQKRKLTLGIAILGDPQVLLLDEP 554
Query: 966 STGMDPEGQQQMWQAIR 1016
+ G+DP + ++W ++
Sbjct: 555 TAGLDPFSRHRVWSLLK 571
>ref|NP_525023.2| ATP-binding cassette sub-family A member 6 [Homo sapiens].
Length = 1617
Score = 327 bits (839), Expect = 1e-89
Identities = 182/374 (48%), Positives = 228/374 (60%), Gaps = 4/374 (1%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFIFRK +KNSG+WSF F + + L + + S L L+P TL+G+ +
Sbjct: 1117 SFIFRKRRKNSGLWSFYFFFASTIMFSITLINHFDLSILITTMVLVPSYTLLGFKTFLEV 1176
Query: 183 FSMFYYLDEESRTIE----PFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISP 350
+Y + E FLV IP+ + F+F+LRC+E K GK MRKDP FRISP
Sbjct: 1177 RDQEHYREFPEANFELSATDFLVCFIPYFQTLLFVFVLRCMELKCGKKRMRKDPVFRISP 1236
Query: 351 RRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXX 530
+ D PN +Q ER RTA AL ++ DEKPVIIASCL KEY G
Sbjct: 1237 QSRDAKPNPEEPIDEDEDIQTERIRTATALTTSILDEKPVIIASCLHKEYAGQKKSCFSK 1296
Query: 531 XXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLG 710
IAAR++SFCV++GE+LGLLG NGAGKS+SI++I+G TKPTAG+V LKG S LG
Sbjct: 1297 RKKKIAARNISFCVQEGEILGLLGPNGAGKSSSIRMISGITKPTAGEVELKGCS--SVLG 1354
Query: 711 FLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALS 890
LGYCPQEN LWP LT++EHLEV+ KL +QL +P + L+
Sbjct: 1355 HLGYCPQENVLWPMLTLREHLEVYAAVKGLRKADARLAIARLVSAFKLHEQLNVPVQKLT 1414
Query: 891 EGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTW 1070
GI RKLCF LS+LGN V+LLDEPSTG+DP GQQQMWQAI+A ++ E+G H
Sbjct: 1415 AGITRKLCFVLSLLGNSPVLLLDEPSTGIDPTGQQQMWQAIQAVVKNTERGVLLTTHNL- 1473
Query: 1071 AEAEARWDRVGLMV 1112
AEAEA DRV +MV
Sbjct: 1474 AEAEALCDRVAIMV 1487
Score = 104 bits (259), Expect = 2e-22
Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 6/200 (3%)
Frame = +3
Query: 453 FDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSI 632
F K I ++KEY G A + + F + +G++ +LGH+GAGKS+ +
Sbjct: 472 FQGKEAIRIRNVKKEYKGKSGKVE-------ALKGLLFDIYEGQITAILGHSGAGKSSLL 524
Query: 633 KVITGDTKPTAGQVLLKGSSRGDPLGF------LGYCPQENALWPSLTVKEHLEVFXXXX 794
++ G + PT G V + + + G CPQ N + LTVKE+L +F
Sbjct: 525 NILNGLSVPTEGSVTIYNKNLSEMQDLEEIRKITGVCPQFNVQFDILTVKENLSLFAKIK 584
Query: 795 XXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTG 974
L +Q+ K LSEG KRKL F ++ILG+P ++LLDEP+TG
Sbjct: 585 GIHLKEVEQEVQRILLELDMQNIQDNLAKHLSEGQKRKLTFGITILGDPQILLLDEPTTG 644
Query: 975 MDPEGQQQMWQAIRATLQKH 1034
+DP + Q+W +R H
Sbjct: 645 LDPFSRDQVWSLLRERRADH 664
>ref|NP_061142.2| ATP-binding cassette sub-family A member 5 [Homo sapiens].
Length = 1642
Score = 228 bits (581), Expect = 8e-60
Identities = 144/389 (37%), Positives = 197/389 (50%), Gaps = 19/389 (4%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSF--------CFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLI 158
SF F+K WSF C I I +G H YA +IP L+
Sbjct: 1124 SFTFKKILNTKEFWSFIYSVAALACIAITEITFFMGYTIATILH---YAFCIIIPIYPLL 1180
Query: 159 GYLFLVFHFSMFYYLDEESRTIEPF----LVSLIPFLHFITFLFILRCLEWKFGKTSMRK 326
G L S + + + T P+ + + P+L + ++F+L+ E K+G S+RK
Sbjct: 1181 GCLISFIKIS-WKNVRKNVDTYNPWDRLSVAVISPYLQCVLWIFLLQYYEKKYGGRSIRK 1239
Query: 327 DPFFRISPRRSD--VCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEY 500
DPFFR +S P V+ ER + + + +EKP I+ S L KEY
Sbjct: 1240 DPFFRNLSTKSKNRKLPEPPDNEDEDEDVKAERLKVKELMGCQCCEEKPSIMVSNLHKEY 1299
Query: 501 TGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLL 680
+A +++SFCV+KGE+LGLLG NGAGKST I ++ GD +PT+GQV L
Sbjct: 1300 DDKKDFLLSRKVKKVATKYISFCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFL 1359
Query: 681 -----KGSSRGDPLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXX 845
+ S D L +GYCPQ N LWP T++EH E++
Sbjct: 1360 GDYSSETSEDDDSLKCMGYCPQINPLWPDTTLQEHFEIYGAVKGMSASDMKEVISRITHA 1419
Query: 846 LKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATL 1025
L L++ L+ K L GIKRKLCFALS+LGNP + LLDEPSTGMDP+ +Q MW+AIR
Sbjct: 1420 LDLKEHLQKTVKKLPAGIKRKLCFALSMLGNPQITLLDEPSTGMDPKAKQHMWRAIRTAF 1479
Query: 1026 QKHEKGAPS*PHTTWAEAEARWDRVGLMV 1112
+ ++ A H EAEA DRV +MV
Sbjct: 1480 KNRKRAAILTTH-YMEEAEAVCDRVAIMV 1507
Score = 89.0 bits (219), Expect = 8e-18
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGS--SRGDPL---- 707
A R++SF + +G++ LLGH+G GKST + ++ G P+ G + G S D +
Sbjct: 496 ALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASIYGHRVSEIDEMFEAR 555
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+G CPQ + + LTV+E+L + L +Q K L
Sbjct: 556 KMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKL 615
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIR 1016
S G KRKL +++LGNP ++LLDEP+ GMDP + +W ++
Sbjct: 616 SGGQKRKLSLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNLLK 658
>ref|NP_758424.1| ATP-binding cassette sub-family A member 5 [Homo sapiens].
Length = 1642
Score = 228 bits (581), Expect = 8e-60
Identities = 144/389 (37%), Positives = 197/389 (50%), Gaps = 19/389 (4%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSF--------CFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLI 158
SF F+K WSF C I I +G H YA +IP L+
Sbjct: 1124 SFTFKKILNTKEFWSFIYSVAALACIAITEITFFMGYTIATILH---YAFCIIIPIYPLL 1180
Query: 159 GYLFLVFHFSMFYYLDEESRTIEPF----LVSLIPFLHFITFLFILRCLEWKFGKTSMRK 326
G L S + + + T P+ + + P+L + ++F+L+ E K+G S+RK
Sbjct: 1181 GCLISFIKIS-WKNVRKNVDTYNPWDRLSVAVISPYLQCVLWIFLLQYYEKKYGGRSIRK 1239
Query: 327 DPFFRISPRRSD--VCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEY 500
DPFFR +S P V+ ER + + + +EKP I+ S L KEY
Sbjct: 1240 DPFFRNLSTKSKNRKLPEPPDNEDEDEDVKAERLKVKELMGCQCCEEKPSIMVSNLHKEY 1299
Query: 501 TGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLL 680
+A +++SFCV+KGE+LGLLG NGAGKST I ++ GD +PT+GQV L
Sbjct: 1300 DDKKDFLLSRKVKKVATKYISFCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFL 1359
Query: 681 -----KGSSRGDPLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXX 845
+ S D L +GYCPQ N LWP T++EH E++
Sbjct: 1360 GDYSSETSEDDDSLKCMGYCPQINPLWPDTTLQEHFEIYGAVKGMSASDMKEVISRITHA 1419
Query: 846 LKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATL 1025
L L++ L+ K L GIKRKLCFALS+LGNP + LLDEPSTGMDP+ +Q MW+AIR
Sbjct: 1420 LDLKEHLQKTVKKLPAGIKRKLCFALSMLGNPQITLLDEPSTGMDPKAKQHMWRAIRTAF 1479
Query: 1026 QKHEKGAPS*PHTTWAEAEARWDRVGLMV 1112
+ ++ A H EAEA DRV +MV
Sbjct: 1480 KNRKRAAILTTH-YMEEAEAVCDRVAIMV 1507
Score = 89.0 bits (219), Expect = 8e-18
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGS--SRGDPL---- 707
A R++SF + +G++ LLGH+G GKST + ++ G P+ G + G S D +
Sbjct: 496 ALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASIYGHRVSEIDEMFEAR 555
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+G CPQ + + LTV+E+L + L +Q K L
Sbjct: 556 KMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQTIKDNQAKKL 615
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIR 1016
S G KRKL +++LGNP ++LLDEP+ GMDP + +W ++
Sbjct: 616 SGGQKRKLSLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNLLK 658
>ref|NP_775099.2| ATP-binding cassette sub-family A member 12 isoform a [Homo sapiens].
Length = 2595
Score = 114 bits (284), Expect(2) = 2e-25
Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG-----DPL 707
IA ++S + GE GLLG NGAGK+T K++TGD P++G +L++ +
Sbjct: 2271 IAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVDSHS 2330
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+GYCPQE+AL +TV+EHL + L L T
Sbjct: 2331 SLVGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKETVHKLLRRLHLMPFKDRATSMC 2390
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTT 1067
S G KRKL AL+++G PS++LLDEPS+GMDP+ ++ +W+ I +Q K + +
Sbjct: 2391 SYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWKIISEEVQ--NKCSVILTSHS 2448
Query: 1068 WAEAEARWDRVGLMV 1112
E EA R+ +MV
Sbjct: 2449 MEECEALCTRLAIMV 2463
Score = 20.8 bits (42), Expect(2) = 2e-25
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 1133 IGAIHHLKNQFG 1168
IG++ H+K++FG
Sbjct: 2470 IGSLQHIKSRFG 2481
Score = 79.0 bits (193), Expect = 8e-15
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF--- 713
+A +++ +G + LLG NGAGK+T+I ++TG +AG + + G L
Sbjct: 1359 VAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLHTVRK 1418
Query: 714 -LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTK--- 881
+G C Q + L+ LT KEHL ++ +L +++K K
Sbjct: 1419 NMGVCMQHDVLFSYLTTKEHLLLYGSIKVPHWTKK-----------QLHEEVKRTLKDTG 1467
Query: 882 ----------ALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
LS G+KRKL +++++G VV+LDEPSTG+DP ++ +W I
Sbjct: 1468 LYSHRHKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI 1521
>ref|NP_056472.2| ATP-binding cassette sub-family A member 12 isoform b [Homo sapiens].
Length = 2277
Score = 114 bits (284), Expect(2) = 2e-25
Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG-----DPL 707
IA ++S + GE GLLG NGAGK+T K++TGD P++G +L++ +
Sbjct: 1953 IAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVDSHS 2012
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+GYCPQE+AL +TV+EHL + L L T
Sbjct: 2013 SLVGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKETVHKLLRRLHLMPFKDRATSMC 2072
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTT 1067
S G KRKL AL+++G PS++LLDEPS+GMDP+ ++ +W+ I +Q K + +
Sbjct: 2073 SYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWKIISEEVQ--NKCSVILTSHS 2130
Query: 1068 WAEAEARWDRVGLMV 1112
E EA R+ +MV
Sbjct: 2131 MEECEALCTRLAIMV 2145
Score = 20.8 bits (42), Expect(2) = 2e-25
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 1133 IGAIHHLKNQFG 1168
IG++ H+K++FG
Sbjct: 2152 IGSLQHIKSRFG 2163
Score = 79.0 bits (193), Expect = 8e-15
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF--- 713
+A +++ +G + LLG NGAGK+T+I ++TG +AG + + G L
Sbjct: 1041 VAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLHTVRK 1100
Query: 714 -LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTK--- 881
+G C Q + L+ LT KEHL ++ +L +++K K
Sbjct: 1101 NMGVCMQHDVLFSYLTTKEHLLLYGSIKVPHWTKK-----------QLHEEVKRTLKDTG 1149
Query: 882 ----------ALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
LS G+KRKL +++++G VV+LDEPSTG+DP ++ +W I
Sbjct: 1150 LYSHRHKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI 1203
>ref|NP_997698.1| ATP-binding cassette sub-family A member 2 isoform b [Homo sapiens].
Length = 2466
Score = 107 bits (266), Expect(2) = 1e-24
Identities = 68/194 (35%), Positives = 99/194 (51%), Gaps = 4/194 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPL----G 710
+A + VR GE GLLG NGAGK+++ K++TGD T G+ + G S L
Sbjct: 2099 LAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQ 2158
Query: 711 FLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALS 890
LGYCPQ +AL+ LT +EHL+++ L+L P S
Sbjct: 2159 SLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYS 2218
Query: 891 EGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTW 1070
G KRKL A++++G P+ + LDEP+TGMDP+ ++ +W I L K + H +
Sbjct: 2219 GGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLI-LDLIKTGRSVVLTSH-SM 2276
Query: 1071 AEAEARWDRVGLMV 1112
E EA R+ +MV
Sbjct: 2277 EECEALCTRLAIMV 2290
Score = 25.4 bits (54), Expect(2) = 1e-24
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 1124 LKMIGAIHHLKNQFG 1168
L+ +G+I HLKN+FG
Sbjct: 2294 LRCLGSIQHLKNRFG 2308
Score = 93.6 bits (231), Expect = 3e-19
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKG----SSRGDPLG 710
+A +S + + +V+ LGHNGAGK+T++ ++TG PT+G + G + +
Sbjct: 1036 LALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRK 1095
Query: 711 FLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALS 890
LG CPQ N L+ LTV+EHL + L+L ++ + LS
Sbjct: 1096 NLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIEDLELSNKRHSLVQTLS 1155
Query: 891 EGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
G+KRKL A++ +G ++LDEP+ G+DP ++ +W I
Sbjct: 1156 GGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLI 1196
>ref|NP_001597.2| ATP-binding cassette sub-family A member 2 isoform a [Homo sapiens].
Length = 2436
Score = 107 bits (266), Expect(2) = 1e-24
Identities = 68/194 (35%), Positives = 99/194 (51%), Gaps = 4/194 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPL----G 710
+A + VR GE GLLG NGAGK+++ K++TGD T G+ + G S L
Sbjct: 2069 LAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQ 2128
Query: 711 FLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALS 890
LGYCPQ +AL+ LT +EHL+++ L+L P S
Sbjct: 2129 SLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYS 2188
Query: 891 EGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTW 1070
G KRKL A++++G P+ + LDEP+TGMDP+ ++ +W I L K + H +
Sbjct: 2189 GGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLI-LDLIKTGRSVVLTSH-SM 2246
Query: 1071 AEAEARWDRVGLMV 1112
E EA R+ +MV
Sbjct: 2247 EECEALCTRLAIMV 2260
Score = 25.4 bits (54), Expect(2) = 1e-24
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 1124 LKMIGAIHHLKNQFG 1168
L+ +G+I HLKN+FG
Sbjct: 2264 LRCLGSIQHLKNRFG 2278
Score = 93.6 bits (231), Expect = 3e-19
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKG----SSRGDPLG 710
+A +S + + +V+ LGHNGAGK+T++ ++TG PT+G + G + +
Sbjct: 1006 LALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRK 1065
Query: 711 FLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALS 890
LG CPQ N L+ LTV+EHL + L+L ++ + LS
Sbjct: 1066 NLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIEDLELSNKRHSLVQTLS 1125
Query: 891 EGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
G+KRKL A++ +G ++LDEP+ G+DP ++ +W I
Sbjct: 1126 GGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLI 1166
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,918,029
Number of extensions: 1368260
Number of successful extensions: 9341
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 8961
Number of HSP's successfully gapped: 51
Length of query: 390
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,868,908
Effective search space: 4252507688
Effective search space used: 4252507688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004361
(1170 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038879.2| ATP-binding cassette sub-family A member 8-B [M... 431 e-121
Alignment gi|NP_694785.3| ATP-binding cassette sub-family A member 8-A [M... 387 e-108
Alignment gi|NP_671753.2| ATP-binding cassette sub-family A member 9 [Mus... 381 e-106
Alignment gi|NP_671751.2| ATP-binding cassette sub-family A member 6 isof... 310 8e-85
Alignment gi|NP_671752.2| ATP-binding cassette sub-family A member 5 [Mus... 219 4e-57
Alignment gi|NP_780419.2| ATP-binding cassette, sub-family A (ABC1), memb... 115 7e-26
Alignment gi|NP_031405.2| ATP-binding cassette sub-family A member 2 [Mus... 107 7e-25
Alignment gi|NP_038878.1| ATP-binding cassette sub-family A member 7 [Mus... 112 7e-25
Alignment gi|NP_839990.2| ATP-binding cassette sub-family A member 13 [Mu... 110 2e-24
Alignment gi|NP_080734.3| ATP-binding cassette, sub-family A (ABC1), memb... 107 1e-23
>ref|NP_038879.2| ATP-binding cassette sub-family A member 8-B [Mus musculus].
Length = 1620
Score = 431 bits (1108), Expect = e-121
Identities = 228/370 (61%), Positives = 259/370 (70%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFI RKGKKNSGIWS F IIT+ +V +L Y + FLIP +TL+G L L H
Sbjct: 1123 SFISRKGKKNSGIWSLSFYIITVFSVAVILLAFDVDGTQYYIIFLIPPSTLVGCLILSLH 1182
Query: 183 FSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSD 362
+ EE + IEPFLV LIPFLH F+F LRCLEWKFGK +MRKDP FRISPR +D
Sbjct: 1183 L-FIGQIFEEGQVIEPFLVFLIPFLHVFIFIFTLRCLEWKFGKKTMRKDPIFRISPRNND 1241
Query: 363 VCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXX 542
V N VQMER RTA+AL ST+FDEKPVIIASCLRKEY G
Sbjct: 1242 VYQNPEEPEDEDEDVQMERMRTANALVSTSFDEKPVIIASCLRKEYAGKQKHCLSKKKAK 1301
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGFLGY 722
IA R+VSFCVRKGE+LGLLGHNGAGKSTS+K+I+GDTK TAGQVLLKGS GD GFLGY
Sbjct: 1302 IATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKVTAGQVLLKGSREGDTPGFLGY 1361
Query: 723 CPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIK 902
CPQENALWP+LTVKEHLE+F LKLQDQLK P K LSEG+K
Sbjct: 1362 CPQENALWPNLTVKEHLEIFAAVRGLRKSHAAVAITRLADALKLQDQLKSPVKTLSEGVK 1421
Query: 903 RKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAE 1082
RKLCF LSILGNPS++LLDEPSTG+DPEGQQQ+WQAIRA ++ ++GA H AEAE
Sbjct: 1422 RKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTH-YMAEAE 1480
Query: 1083 ARWDRVGLMV 1112
A DRV ++V
Sbjct: 1481 ALCDRVAILV 1490
Score = 94.4 bits (233), Expect = 2e-19
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 6/197 (3%)
Frame = +3
Query: 444 STNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKS 623
S F K I + KEY G A + ++ + +G++ +LGH+GAGKS
Sbjct: 470 SPEFHGKESIRIRNISKEYKGKPNKIE-------ALKDLTLDIYEGQITAVLGHSGAGKS 522
Query: 624 TSIKVITGDTKPTAGQVLLKGSSRGDP------LGFLGYCPQENALWPSLTVKEHLEVFX 785
T + +++G + PT G V + ++ + L G CPQ N + LTV+E+L +F
Sbjct: 523 TLLNILSGLSVPTKGSVTIYNNNLSEMADLENILRIAGVCPQANVQFDFLTVRENLRLFA 582
Query: 786 XXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEP 965
L++++ + + LS G KRKL F ++ILG+ + LLDEP
Sbjct: 583 KIRGIPPQDVEKEVQRVLLELEMKNIQNILAQNLSGGQKRKLTFGIAILGDSQIFLLDEP 642
Query: 966 STGMDPEGQQQMWQAIR 1016
+ G+DP + ++W ++
Sbjct: 643 TAGLDPFSRHRVWNLLK 659
>ref|NP_694785.3| ATP-binding cassette sub-family A member 8-A [Mus musculus].
Length = 1619
Score = 387 bits (995), Expect = e-108
Identities = 211/370 (57%), Positives = 243/370 (65%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFI+RKG+KNSG+WS CF I++ ++ +L D +L+ + L+P ATL G L F
Sbjct: 1122 SFIYRKGRKNSGLWSLCFYIVSFFSMCFMLIDYFRDISLFVLIALVPPATLGGCTLLHFE 1181
Query: 183 FSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSD 362
F + E +L L P LHF F+ ILRC+E KFG +MR DP FRISPR
Sbjct: 1182 NREFSEIIFEPEREYSYLFFLAPLLHFAIFVVILRCMERKFGMKTMRTDPVFRISPRSDR 1241
Query: 363 VCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXX 542
V N V ER TA+AL S +F EKP IIASCLRKEY G
Sbjct: 1242 VFNNPEDPDGEDEDVSQERVWTANALTSADFQEKPAIIASCLRKEYKGKKKCFVLKSKKK 1301
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGFLGY 722
IA R++SFCVRKGEV+GLLGHNGAGKSTSIK+ITG+TKP+AGQVLLKGSS GD GFLGY
Sbjct: 1302 IATRNISFCVRKGEVVGLLGHNGAGKSTSIKMITGETKPSAGQVLLKGSSTGDTPGFLGY 1361
Query: 723 CPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIK 902
CPQENALW +LTV+EHLE+F LKLQDQLK P K LSEG+K
Sbjct: 1362 CPQENALWLNLTVREHLEIFAAIKGMRKSDANVAIERLADALKLQDQLKSPVKTLSEGVK 1421
Query: 903 RKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAE 1082
RKLCF LSILGNPSVVLLDEPSTGMDPEGQQQMWQAI+AT E+GA H AEAE
Sbjct: 1422 RKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQAIQATFSNTERGALLTTH-YMAEAE 1480
Query: 1083 ARWDRVGLMV 1112
A DRV +MV
Sbjct: 1481 AVCDRVAIMV 1490
Score = 94.4 bits (233), Expect = 2e-19
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 6/163 (3%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF---- 713
A + ++ V KG++ +LGH+GAGKST + V++G PT G V + + +
Sbjct: 495 ALKDLTLDVYKGQITAILGHSGAGKSTLLNVLSGLCVPTKGWVTIHNNKLSEMTDLENIS 554
Query: 714 --LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
G CPQ N + LTV+E+L +F L +++ + + L
Sbjct: 555 KLTGVCPQCNVQFDFLTVRENLRLFAKIKGIQAHEVDNEVQRVLLELDMKNTQNILVQNL 614
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIR 1016
S G KRKL F ++ILG+P + LLDEP+ G+DP + ++W ++
Sbjct: 615 SGGQKRKLTFGIAILGDPQIFLLDEPTAGLDPFSRHRVWNFLK 657
>ref|NP_671753.2| ATP-binding cassette sub-family A member 9 [Mus musculus].
Length = 1623
Score = 381 bits (978), Expect = e-106
Identities = 212/373 (56%), Positives = 241/373 (64%), Gaps = 3/373 (0%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFL--- 173
SFIFR G+KNSGIWSF F I+TI ++ ++ L FL+P TLIG L +
Sbjct: 1125 SFIFRNGRKNSGIWSFFFLIVTIFFIIATDINEYGFLELLICTFLVPPFTLIGSLLIFSE 1184
Query: 174 VFHFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPR 353
V + S+ Y ES+ + FL LIP+LHF+ F FILRCLE K S+R DP FRISPR
Sbjct: 1185 VSYDSVDYLGTSESQLV--FLALLIPYLHFLLFFFILRCLERYLRKKSLRVDPVFRISPR 1242
Query: 354 RSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXX 533
PN VQMER RT A+ + DEKPVIIASCLRKEY G
Sbjct: 1243 SCPAVPNPEEPGEEDEDVQMERVRTTGAMATLQTDEKPVIIASCLRKEYIGRTKRCFSKM 1302
Query: 534 XXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF 713
IA R++SFCV+KGEVLGLLGHNGAGKST+I +ITGDT PTAGQV LKGS G LGF
Sbjct: 1303 KKKIATRNISFCVKKGEVLGLLGHNGAGKSTTISMITGDTIPTAGQVFLKGSGGGAALGF 1362
Query: 714 LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSE 893
LGYCPQEN LWP+LTVKEHLE++ LKLQD LK + LSE
Sbjct: 1363 LGYCPQENVLWPNLTVKEHLELYAAVKGLKKKDAVVTITRLVNALKLQDHLKALVRTLSE 1422
Query: 894 GIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWA 1073
G+KRKLCF LSILGNP VVLLDEPSTGMDPEGQQQMWQAIRAT E+GA H A
Sbjct: 1423 GVKRKLCFVLSILGNPPVVLLDEPSTGMDPEGQQQMWQAIRATFTNTERGALLTTH-YMA 1481
Query: 1074 EAEARWDRVGLMV 1112
EAEA DRV +MV
Sbjct: 1482 EAEAVCDRVAIMV 1494
Score = 102 bits (255), Expect = 4e-22
Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Frame = +3
Query: 444 STNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKS 623
S F K I L+KEY+G A R + F + +G++ LLGH+GAGK+
Sbjct: 472 SPEFQGKEAIRIKNLKKEYSGKHGKVE-------ALRGLGFDIYEGQITALLGHSGAGKT 524
Query: 624 TSIKVITGDTKPTAGQVLLKGSSRGDP------LGFLGYCPQENALWPSLTVKEHLEVFX 785
T I ++G + PT G V + + + L G CPQ N + LTV+E+L +F
Sbjct: 525 TLINTLSGLSPPTTGSVTIYNQTVSEMDDSDAVLTITGVCPQSNVQFGFLTVRENLRLFA 584
Query: 786 XXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEP 965
L++++ + + LS G KRKL ++ILG+P V+LLDEP
Sbjct: 585 KIKGILPHEVEQEVQQVLQDLEMENIQDILAQNLSGGQKRKLTLGIAILGDPQVLLLDEP 644
Query: 966 STGMDPEGQQQMWQAIR 1016
+ G+DP + ++W ++
Sbjct: 645 TAGLDPLSRHRIWNLLK 661
>ref|NP_671751.2| ATP-binding cassette sub-family A member 6 isoform 1 [Mus musculus].
Length = 1624
Score = 310 bits (794), Expect(2) = 8e-85
Identities = 172/379 (45%), Positives = 225/379 (59%), Gaps = 9/379 (2%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SF+F K KKNS +WS CF ++ + + + + + L+P L G L ++
Sbjct: 1117 SFVFGKRKKNSTLWSICFLLVIAITFEKVANGPFNEALVISATMLVPSFALNGLLVVLEM 1176
Query: 183 FSMFYYLDEES----RTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISP 350
+ YY++ E + L+ LIP++H + F+F+LRCLE K+GK +R+DP FRI+P
Sbjct: 1177 RAYQYYIEFEEIKHGLSAVDLLLCLIPYIHTLLFIFVLRCLELKYGKNVVRRDPIFRIAP 1236
Query: 351 RRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXX 530
+ PN VQ ER RT+DAL++ N DEKPVIIASCL KEY G
Sbjct: 1237 QSLKAQPNPEEPIDEDENVQAERLRTSDALSTPNLDEKPVIIASCLHKEYAGQKKHCCSR 1296
Query: 531 XXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSS-----R 695
+A R+VSFCV KGE+LGLLG +GAGKS+SI++I G TKPTAGQV LK S +
Sbjct: 1297 RTRNMAVRNVSFCVNKGEILGLLGPDGAGKSSSIRMIAGITKPTAGQVELKRLSSAVGHQ 1356
Query: 696 GDPLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLP 875
GD GYCPQEN LWP+LTVKEHLE++ LKL DQL +
Sbjct: 1357 GDSRAEFGYCPQENGLWPNLTVKEHLELYAAVKGLRKEDAVVAISRLVNALKLHDQLNVQ 1416
Query: 876 TKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS* 1055
+ L G RKLCF LSILGN V++LDEPSTG+D G+ Q+WQAI+A ++ +EKG
Sbjct: 1417 VQNLVAGATRKLCFVLSILGNSPVLILDEPSTGLDVSGKHQVWQAIQAVVKDNEKGVLLS 1476
Query: 1056 PHTTWAEAEARWDRVGLMV 1112
H AEAEA DR +MV
Sbjct: 1477 THDL-AEAEALCDRAAIMV 1494
Score = 23.1 bits (48), Expect(2) = 8e-85
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 1124 LKMIGAIHHLKNQFG 1168
L+ IG I HLK +FG
Sbjct: 1498 LRCIGPIQHLKRKFG 1512
Score = 95.5 bits (236), Expect = 7e-20
Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 6/200 (3%)
Frame = +3
Query: 453 FDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSI 632
+ K I ++KEY G A + + + + ++ +LGH+GAGKS+ +
Sbjct: 472 YQGKEAIRIRNIKKEYKGKSGKVK-------ALKGLFLDIYESQITAILGHSGAGKSSLL 524
Query: 633 KVITGDTKPTAGQVLLKGSSRGDPLGF------LGYCPQENALWPSLTVKEHLEVFXXXX 794
+++G PTAG V + + D +G CPQ N + +LTVKE+L +F
Sbjct: 525 NILSGLYVPTAGSVTVYNKNLSDMQDLKEIRKAIGVCPQHNVQFDALTVKENLTLFAKIK 584
Query: 795 XXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTG 974
L +Q+ + LSEG KRKL F ++ +G+P ++LLDEP+ G
Sbjct: 585 GILPQDVEQEVQQILSELDMQNIRDDLAEHLSEGQKRKLTFGIATVGDPQILLLDEPTVG 644
Query: 975 MDPEGQQQMWQAIRATLQKH 1034
+DP +Q++W ++ H
Sbjct: 645 LDPFSRQRIWGFLKERRADH 664
>ref|NP_671752.2| ATP-binding cassette sub-family A member 5 [Mus musculus].
Length = 1642
Score = 219 bits (557), Expect = 4e-57
Identities = 142/387 (36%), Positives = 201/387 (51%), Gaps = 17/387 (4%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGL----LFDDSEHSALYAVAFLI--PQATLIGY 164
SF F+K WSF + + T LA + + F +A++ F I P L+G
Sbjct: 1124 SFTFKKILNTKEFWSFIYSV-TALACVAITETTFFLQYAVTAVFHYTFCIAIPIYPLLGC 1182
Query: 165 LFLVFHFSMFYYLDEESRTIEPF---LVSLI-PFLHFITFLFILRCLEWKFGKTSMRKDP 332
L + F + + + T P+ LV++I P+L I ++F+L+ E G S+RKDP
Sbjct: 1183 L-ISFIKGSWKNMPKNENTYNPWDRLLVAVIMPYLQCILWIFLLQHYEKIHGGRSIRKDP 1241
Query: 333 FFRISPRRSD--VCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTG 506
FFR +++ P V+ ER + + + +EKP I+ L KEY
Sbjct: 1242 FFRALSQKAKNKKFPEPPINEDEDEDVKAERLKVKELMGCQCCEEKPAIMVCNLHKEYDD 1301
Query: 507 XXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLL-- 680
+A +++SFCV+KGE+LGLLG NGAGKST I + GD +PT+G++ L
Sbjct: 1302 KKDFLHSRKTTKVATKYISFCVKKGEILGLLGPNGAGKSTVINTLVGDVEPTSGKIFLGD 1361
Query: 681 ---KGSSRGDPLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLK 851
S + + +GYCPQ N LWP LT++EH E++ L
Sbjct: 1362 YGSHSSEDDESIKCMGYCPQTNPLWPDLTLQEHFEIYGAVKGMSPGDMKEVISRITKALD 1421
Query: 852 LQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQK 1031
L++ L+ K L GIKRKLCFALS+LGNP V LLDEPSTGMDP +Q MW+AIR +
Sbjct: 1422 LKEHLQKTVKKLPAGIKRKLCFALSMLGNPQVTLLDEPSTGMDPRAKQHMWRAIRTAFKN 1481
Query: 1032 HEKGAPS*PHTTWAEAEARWDRVGLMV 1112
++ A H EAEA DRV +MV
Sbjct: 1482 KKRAALLTTH-YMEEAEAVCDRVAIMV 1507
Score = 89.4 bits (220), Expect = 5e-18
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGS--SRGDPL---- 707
A R++SF + +G++ LLGH+G GKST + ++ G P+ G + G S D +
Sbjct: 496 ALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASIYGHRVSEIDEMFEAR 555
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+G CPQ + + LTV+E+L + L +Q K L
Sbjct: 556 KMIGICPQSDINFDVLTVEENLSILASIKGIPANNIIQEVQKVLLDLDMQAIKDNQAKKL 615
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIR 1016
S G KRKL +++LGNP ++LLDEP+ GMDP + +W ++
Sbjct: 616 SGGQKRKLSVGIAVLGNPKILLLDEPTAGMDPCSRHIVWNLLK 658
>ref|NP_780419.2| ATP-binding cassette, sub-family A (ABC1), member 12 [Mus musculus].
Length = 2595
Score = 115 bits (288), Expect = 7e-26
Identities = 70/195 (35%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG-----DPL 707
IA ++S + GE GLLG NGAGK+T K++TGD P++G +L++ S
Sbjct: 2271 IAVNNISLGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKSGSLGHVDSHS 2330
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+GYCPQE+AL +TV+EHL + L L T
Sbjct: 2331 SLVGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKDTVHKLLRRLHLMAYKDRSTSMC 2390
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTT 1067
S G KRKL AL+++G PS++LLDEPS+GMDP+ ++ +W+ I +Q K + +
Sbjct: 2391 SYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWRIISEEVQ--NKCSVILTSHS 2448
Query: 1068 WAEAEARWDRVGLMV 1112
E EA R+ +MV
Sbjct: 2449 MEECEALCTRLAIMV 2463
Score = 80.9 bits (198), Expect = 2e-15
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF---- 713
A +++ +G + LLG NGAGK+T+I ++TG TAG + + G L
Sbjct: 1360 AVENLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGATAGTIFVYGKDIKTDLNTVRKN 1419
Query: 714 LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTK---- 881
+G C Q + L+ LT KEHL ++ +L +++K K
Sbjct: 1420 MGVCMQHDVLFSYLTTKEHLLLY-----------GSIKVPHWTKTQLHEEVKRTLKDTGL 1468
Query: 882 ---------ALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
LS G+KRKL +++++G VV+LDEPSTG+DP ++ +W I
Sbjct: 1469 YSHRHKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI 1521
>ref|NP_031405.2| ATP-binding cassette sub-family A member 2 [Mus musculus].
Length = 2433
Score = 107 bits (267), Expect(2) = 7e-25
Identities = 68/194 (35%), Positives = 99/194 (51%), Gaps = 4/194 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPL----G 710
+A + VR GE GLLG NGAGK+++ K++TGD T G+ + G S L
Sbjct: 2068 LAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKDLLQVQQ 2127
Query: 711 FLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALS 890
LGYCPQ +AL+ LT +EHL+++ L+L P S
Sbjct: 2128 SLGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVKWALEKLELTKYADKPAGTYS 2187
Query: 891 EGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTW 1070
G KRKL A++++G P+ + LDEP+TGMDP+ ++ +W I L K + H +
Sbjct: 2188 GGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLI-LDLIKTGRSVVLTSH-SM 2245
Query: 1071 AEAEARWDRVGLMV 1112
E EA R+ +MV
Sbjct: 2246 EECEALCTRLAIMV 2259
Score = 25.4 bits (54), Expect(2) = 7e-25
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 1124 LKMIGAIHHLKNQFG 1168
L+ +G+I HLKN+FG
Sbjct: 2263 LRCLGSIQHLKNRFG 2277
Score = 93.2 bits (230), Expect = 3e-19
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKG----SSRGDPLG 710
+A +S + + +V+ LGHNGAGK+T++ ++TG PT+G + G + +
Sbjct: 1004 MALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRK 1063
Query: 711 FLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALS 890
LG CPQ N L+ LTV+EHL + L+L ++ + LS
Sbjct: 1064 NLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRKETDKMIEDLELSNKRHSLVQTLS 1123
Query: 891 EGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
G+KRKL A++ +G ++LDEP+ G+DP ++ +W I
Sbjct: 1124 GGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLI 1164
>ref|NP_038878.1| ATP-binding cassette sub-family A member 7 [Mus musculus].
Length = 2159
Score = 112 bits (279), Expect = 7e-25
Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 4/182 (2%)
Frame = +3
Query: 579 GEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSS----RGDPLGFLGYCPQENALW 746
GE GLLG NGAGK+++ +++TGDT P++G+ +L G + R +GYCPQ +A++
Sbjct: 1834 GECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQERSAAHRSMGYCPQSDAIF 1893
Query: 747 PSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALS 926
LT +EHLE+F L L P S G KRKL AL+
Sbjct: 1894 DLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALA 1953
Query: 927 ILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAEARWDRVGL 1106
++G+P+VV LDEP+TGMDP ++ +W ++ + +++ + + E EA R+ +
Sbjct: 1954 LVGDPAVVFLDEPTTGMDPSARRFLWNSLLSVVREGRSVVLT--SHSMEECEALCTRLAI 2011
Query: 1107 MV 1112
MV
Sbjct: 2012 MV 2013
Score = 85.9 bits (211), Expect = 6e-17
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 5/183 (2%)
Frame = +3
Query: 576 KGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLG----FLGYCPQENAL 743
+G + LGHNGAGK+T++ +++G P++G + G + LG CPQ N L
Sbjct: 830 EGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVL 889
Query: 744 WPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFAL 923
+ LTV+EH+ + + L + T+ LS G++RKL A+
Sbjct: 890 FDMLTVEEHVWFYGRLKGVSAAAMGPERERLIRDVGLTLKRDTQTRHLSGGMQRKLSVAI 949
Query: 924 SILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWA-EAEARWDRV 1100
+ +G VV++DEP+ G+DP ++ +W+ L K+ +G T EAE DRV
Sbjct: 950 AFVGGSRVVIMDEPTAGVDPASRRGIWE----LLLKYREGRTLILSTHHLDEAELLGDRV 1005
Query: 1101 GLM 1109
++
Sbjct: 1006 AMV 1008
>ref|NP_839990.2| ATP-binding cassette sub-family A member 13 [Mus musculus].
Length = 5034
Score = 110 bits (276), Expect = 2e-24
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKG--------SSRGD 701
A +S + +GE GLLG NGAGKST+ K++ G+T P++G +++ +S G
Sbjct: 4711 AVHGISLGIPRGECFGLLGVNGAGKSTTFKILNGETPPSSGYTVIRTPQGDMVDLASAGK 4770
Query: 702 PLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTK 881
+GYCPQ++AL LT EHL+ + L L+ + P
Sbjct: 4771 AGILIGYCPQQDALDELLTGWEHLQYYCRLRGIPKQYIPEVAADLVRRLHLESHVDKPVA 4830
Query: 882 ALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PH 1061
S G +RKL AL+++G P ++LLDEPS+GMDP ++ +WQ I T + + A
Sbjct: 4831 TYSGGTRRKLSTALALVGKPDILLLDEPSSGMDPCSKRYLWQTI--TQEVRDGCAAVLTS 4888
Query: 1062 TTWAEAEARWDRVGLMV 1112
+ E EA R+ +MV
Sbjct: 4889 HSMEECEALCTRLAIMV 4905
Score = 87.8 bits (216), Expect = 1e-17
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF--- 713
+A + ++ + ++ LLG NGAGK+T I ++ G PT+G + + G + L
Sbjct: 3824 VAVQELTLTFHRDQITALLGTNGAGKTTIISMLMGLFPPTSGTITINGKNLQTDLSKVRE 3883
Query: 714 -LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXX--LKLQDQLKLPTKA 884
LG CPQ++ L +LTV+EHL +F ++L P
Sbjct: 3884 ELGVCPQQDVLLDNLTVREHLMLFASIKAPWWTTKELQQQVNKTLDEVELTQHQHKPAGV 3943
Query: 885 LSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
LS G+KRKL ++ +G V+LDEPS+G+DP ++ +W +
Sbjct: 3944 LSGGMKRKLSIGIAFMGMSKTVVLDEPSSGVDPCSRRSLWDIL 3986
>ref|NP_080734.3| ATP-binding cassette, sub-family A (ABC1), member 14 [Mus musculus].
Length = 1683
Score = 107 bits (268), Expect = 1e-23
Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 6/240 (2%)
Frame = +3
Query: 414 ERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLG 593
E + +D L+S + +PV + + +R ++ +A +S + +G++
Sbjct: 496 EESQVSDLLSSDFMEPEPVGLVAGIRIQHL--YKEFILKNSTLMAVNDLSLNLYEGQITV 553
Query: 594 LLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPL----GFLGYCPQENALWPSLTV 761
LLGHNGAGK+T++ ++TG PT G+V + G + LG CPQ++ L+P LTV
Sbjct: 554 LLGHNGAGKTTTLSILTGLYLPTRGKVYISGYDISSDMVQIRKSLGLCPQDDLLFPMLTV 613
Query: 762 KEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNP 941
EHL + L Q +K LS G+KRKL ++++G+
Sbjct: 614 SEHLHFYCVIKGIPLQNQSRETNRMLTSFGLLQQSNTMSKDLSGGMKRKLSIIIALIGDT 673
Query: 942 SVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTT--WAEAEARWDRVGLMVV 1115
VV+LDEP++GMDP ++ W L +H K + TT EA+ DR+ ++V+
Sbjct: 674 KVVILDEPTSGMDPVSRRATWD-----LLQHYKKDRTILLTTHHMDEADVLGDRIAILVM 728
Score = 105 bits (261), Expect(2) = 8e-23
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 4/164 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPL----G 710
+A R++S ++K E GLLG NGAGK+T+ K++TG+ T+G V ++G S +
Sbjct: 1373 LAVRNISVAIQKEECFGLLGLNGAGKTTTFKILTGEEIATSGDVFIEGYSITRNILKVRS 1432
Query: 711 FLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALS 890
+GYCPQ +AL +T +E L ++ L L+ Q LS
Sbjct: 1433 KVGYCPQFDALLDYMTSREILTMYARVWGIPENSIRAYVDNLLKMLYLKPQADKFIYTLS 1492
Query: 891 EGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRAT 1022
G KR+L A++I+GN +VV LDEPSTGMDP ++ +W A+ T
Sbjct: 1493 GGNKRRLSTAIAIMGNSTVVFLDEPSTGMDPLARRMLWNAVIKT 1536
Score = 20.8 bits (42), Expect(2) = 8e-23
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 1133 IGAIHHLKNQFG 1168
+G+ HLKN+FG
Sbjct: 1571 LGSPQHLKNKFG 1582
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,734,424
Number of extensions: 1137048
Number of successful extensions: 7012
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6676
Number of HSP's successfully gapped: 42
Length of query: 390
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,523,851
Effective search space: 3594345237
Effective search space used: 3594345237
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004361
(1170 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131308.2| PREDICTED: LOW QUALITY PROTEIN: ATP-binding ... 578 e-166
Alignment gi|XP_003131306.1| PREDICTED: ATP-binding cassette sub-family A... 427 e-120
Alignment gi|XP_003131310.2| PREDICTED: ATP-binding cassette sub-family A... 370 e-103
Alignment gi|XP_003131309.2| PREDICTED: ATP-binding cassette sub-family A... 314 5e-86
Alignment gi|XP_003361512.1| PREDICTED: ATP-binding cassette sub-family A... 278 4e-75
Alignment gi|XP_003133692.2| PREDICTED: ATP-binding cassette sub-family A... 116 3e-26
Alignment gi|XP_003354015.1| PREDICTED: ATP-binding cassette sub-family A... 112 4e-25
Alignment gi|XP_003354628.1| PREDICTED: ATP-binding cassette sub-family A... 103 1e-22
Alignment gi|XP_001924499.2| PREDICTED: retinal-specific ATP-binding cass... 102 3e-22
Alignment gi|XP_003124604.2| PREDICTED: ATP-binding cassette sub-family A... 100 1e-21
>ref|XP_003131308.2| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family A
member 8 [Sus scrofa].
Length = 1633
Score = 578 bits (1491), Expect(2) = e-166
Identities = 297/350 (84%), Positives = 300/350 (85%), Gaps = 2/350 (0%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFIFRKGKKNSGIWSFCF IITILAVLGLLFDDSEHSALYA+AFLIPQATLIGYLFLVFH
Sbjct: 1133 SFIFRKGKKNSGIWSFCFYIITILAVLGLLFDDSEHSALYAIAFLIPQATLIGYLFLVFH 1192
Query: 183 --FSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRR 356
FSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRR
Sbjct: 1193 LLFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRR 1252
Query: 357 SDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXX 536
SDVCPN VQMERRRTADALNSTNFDEKPVIIASCLRKEYTG
Sbjct: 1253 SDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRK 1312
Query: 537 XXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGFL 716
IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSS GDPLGFL
Sbjct: 1313 KKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFL 1372
Query: 717 GYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEG 896
GYCPQENALWPSLTVKEHLEVF LKLQDQLKLPTKALSEG
Sbjct: 1373 GYCPQENALWPSLTVKEHLEVFGAVKGLRKADAAAAIARLVDALKLQDQLKLPTKALSEG 1432
Query: 897 IKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGA 1046
IKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRAT + E+GA
Sbjct: 1433 IKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGA 1482
Score = 25.8 bits (55), Expect(2) = e-166
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 1127 KMIGAIHHLKNQFG 1168
+ IGAI HLKN+FG
Sbjct: 1508 RCIGAIQHLKNKFG 1521
Score = 97.8 bits (242), Expect = 1e-20
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Frame = +3
Query: 444 STNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKS 623
S F K I + KEY G A + ++F + +G++ +LGH+GAGKS
Sbjct: 471 SPEFHGKEAIRIRNVTKEYKGKPDKIE-------ALKDLAFDIYEGQITAILGHSGAGKS 523
Query: 624 TSIKVITGDTKPTAGQVLLKGSSRGDPL------GFLGYCPQENALWPSLTVKEHLEVFX 785
T + +++G + PT G V + + G CPQ N + LTV+E+L +F
Sbjct: 524 TLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFA 583
Query: 786 XXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEP 965
L++++ + + LS G KRKL F ++ILG+P + LLDEP
Sbjct: 584 KIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQIFLLDEP 643
Query: 966 STGMDPEGQQQMWQAIR 1016
+ G+DP + Q+W ++
Sbjct: 644 TAGLDPFSRHQVWNILK 660
>ref|XP_003131306.1| PREDICTED: ATP-binding cassette sub-family A member 9 isoform 1 [Sus
scrofa].
Length = 1623
Score = 427 bits (1098), Expect = e-120
Identities = 233/373 (62%), Positives = 260/373 (69%), Gaps = 3/373 (0%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFLVFH 182
SFIFR G+KNSGIWSF F IITI +++ + + L+ LIP TLIG LF+
Sbjct: 1126 SFIFRNGRKNSGIWSFFFLIITIFSIVAIDLSEYGFLGLFLCTILIPPFTLIGSLFIFSE 1185
Query: 183 FS---MFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPR 353
S M Y E + + FL LIP+LHF FLF+LRCLE F K SMRKDP FRISPR
Sbjct: 1186 ISPDSMDYLGASEQQIV--FLALLIPYLHFFIFLFVLRCLEMNFRKKSMRKDPVFRISPR 1243
Query: 354 RSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXX 533
S V PN VQMER +TA+A+ + DEKPVIIASCLRKEY G
Sbjct: 1244 GSSVFPNPEKPDGEDEDVQMERIKTANAVTVPDSDEKPVIIASCLRKEYAGKKRNCFARR 1303
Query: 534 XXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF 713
+A R++SFCV+KGEV+GLLGHNGAGKST+IK+ITGDTKPTAGQVLLKGSS GDPLGF
Sbjct: 1304 KKKVATRNISFCVKKGEVIGLLGHNGAGKSTTIKMITGDTKPTAGQVLLKGSSGGDPLGF 1363
Query: 714 LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSE 893
LGYCPQE+ALWPSLTVKEHLEVF LKLQDQLKLPTKALSE
Sbjct: 1364 LGYCPQEDALWPSLTVKEHLEVFAAVKGLRKADAAAAIERLVDALKLQDQLKLPTKALSE 1423
Query: 894 GIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWA 1073
GIKRKLCF LSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRAT + E+GA H A
Sbjct: 1424 GIKRKLCFTLSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTH-YMA 1482
Query: 1074 EAEARWDRVGLMV 1112
EAEA DRV +MV
Sbjct: 1483 EAEAVCDRVAIMV 1495
Score = 89.4 bits (220), Expect = 4e-18
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Frame = +3
Query: 570 VRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG-----DPLGFL-GYCPQ 731
V +G + LLGH+GAGK+T + +++G + PT+G V + + + L L G CPQ
Sbjct: 507 VYEGHITALLGHSGAGKTTLLNILSGLSVPTSGSVTIYNNKLSAVADLENLSQLTGVCPQ 566
Query: 732 ENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKL 911
N + LTV+E+L +F L++++ + + LS G KRKL
Sbjct: 567 VNVQFGFLTVRENLRLFAQIKGIQPQGAEQEVQRVLRDLEMENIQDILAQNLSGGQKRKL 626
Query: 912 CFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIR 1016
++ILG+P V+LLDEP+ G DP + ++W ++
Sbjct: 627 TLGIAILGDPQVLLLDEPTAGSDPLSRHRVWNLLK 661
>ref|XP_003131310.2| PREDICTED: ATP-binding cassette sub-family A member 8-like, partial
[Sus scrofa].
Length = 343
Score = 370 bits (950), Expect = e-103
Identities = 198/258 (76%), Positives = 201/258 (77%)
Frame = +3
Query: 339 RISPRRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXX 518
RISPRRSDVCPN VQMERRRTADALNSTNFDEKPVIIASCLRKEYTG
Sbjct: 36 RISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKR 95
Query: 519 XXXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG 698
IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSS G
Sbjct: 96 CLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGG 155
Query: 699 DPLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPT 878
DPLGFLGYCPQENALWPSLTVKEHLEVF LKLQDQLKLPT
Sbjct: 156 DPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIARLVDALKLQDQLKLPT 215
Query: 879 KALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*P 1058
KALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRAT + E+GA
Sbjct: 216 KALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTT 275
Query: 1059 HTTWAEAEARWDRVGLMV 1112
H AEAEA DRV +MV
Sbjct: 276 H-YMAEAEAVCDRVAIMV 292
>ref|XP_003131309.2| PREDICTED: ATP-binding cassette sub-family A member 6 [Sus scrofa].
Length = 1598
Score = 314 bits (805), Expect = 5e-86
Identities = 184/383 (48%), Positives = 226/383 (59%), Gaps = 13/383 (3%)
Frame = +3
Query: 3 SFIFRKGKKNSGIWSFCFCIITILAVLGLLFDDSEHSALYAVAFLIPQATLIGYLFL--- 173
SFIFRK + NSG+WSFCF I+ + G++ D + L L P TL G++ L
Sbjct: 1091 SFIFRKRRTNSGLWSFCFYIVPVFT-FGIIVID--YLDLIVCMVLFPSMTLGGFVALLET 1147
Query: 174 ----VFHFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFR 341
+ + M Y L LIP+ + F+F+LRCLE K GK M KDP FR
Sbjct: 1148 VRNRIHKYQMNYGDLNYDLNAADLLFCLIPYFQALLFVFVLRCLETKCGKKIMHKDPVFR 1207
Query: 342 ISPRRSDVCPNXXXXXXXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXX 521
I+PR D PN VQ ER RTA AL +T+ +EKPV+IASCLRKEY G
Sbjct: 1208 IAPRSRDARPNPEEPVDEDEDVQAERIRTATAL-TTSIEEKPVVIASCLRKEYAGQKKSC 1266
Query: 522 XXXXXXXIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG- 698
IAAR++SFCV+KGE+LGLLG NGAGKS+SI++I+G TKPTAG+V L G G
Sbjct: 1267 FSKRKKKIAARNISFCVKKGEILGLLGPNGAGKSSSIRMISGVTKPTAGEVELTGYGSGL 1326
Query: 699 -----DPLGFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQ 863
+ FLGYCPQEN LWP LTV+EHLEVF KL +Q
Sbjct: 1327 GHRRDGRVQFLGYCPQENVLWPVLTVREHLEVFAAVKGLRKADASVAISRLVDSFKLHEQ 1386
Query: 864 LKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKG 1043
L +P + L+ G RKLCF LSILGNP V+LLDEPSTGMDP QQQ+WQ I+ ++ E+G
Sbjct: 1387 LNVPVQYLTAGAARKLCFVLSILGNPPVLLLDEPSTGMDPAEQQQVWQTIQTAVKTAERG 1446
Query: 1044 APS*PHTTWAEAEARWDRVGLMV 1112
A H AEAEA DRV +MV
Sbjct: 1447 ALLTTHYL-AEAEAVCDRVAIMV 1468
Score = 94.0 bits (232), Expect = 1e-19
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Frame = +3
Query: 564 FCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF------LGYC 725
F + +G++ +LGH+GAGKS+ + ++ G + PT G V + + + G C
Sbjct: 477 FDIYEGQITAILGHSGAGKSSLLNILNGSSVPTEGSVTIYNKNLSEVQDLEEVRKITGVC 536
Query: 726 PQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKR 905
PQ N +LTVKE+L +F L +Q+ LSEG KR
Sbjct: 537 PQFNVQLDTLTVKENLRLFAHIKGIQPQEVEQEVQRILLELDIQNVQDSLATHLSEGQKR 596
Query: 906 KLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIR 1016
KL ++ILG+P V+LLDEP+ G+DP + ++W ++
Sbjct: 597 KLTIGIAILGDPQVLLLDEPTVGLDPFSRHRVWSFLK 633
>ref|XP_003361512.1| PREDICTED: ATP-binding cassette sub-family A member 6-like, partial
[Sus scrofa].
Length = 1010
Score = 278 bits (711), Expect = 4e-75
Identities = 155/294 (52%), Positives = 185/294 (62%), Gaps = 6/294 (2%)
Frame = +3
Query: 234 LVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNXXXXXXXXXXVQM 413
L LIP+ + F+F+LRCLE K GK M KDP FRI+PR D PN VQ
Sbjct: 585 LFCLIPYFQALLFVFVLRCLETKCGKKIMHKDPVFRIAPRSRDARPNPEEPVDEDEDVQA 644
Query: 414 ERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRKGEVLG 593
ER RTA AL +T+ +EKPV+IASCLRKEY G IAAR++SFCV+KGE+LG
Sbjct: 645 ERIRTATAL-TTSIEEKPVVIASCLRKEYAGQKKSCFSKRKKKIAARNISFCVKKGEILG 703
Query: 594 LLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG------DPLGFLGYCPQENALWPSL 755
LLG NGAGKS+SI++I+G TKPTAG+V L G G + FLGYCPQEN LWP L
Sbjct: 704 LLGPNGAGKSSSIRMISGVTKPTAGEVELTGYGSGLGHRRDGRVQFLGYCPQENVLWPVL 763
Query: 756 TVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILG 935
TV+EHLEVF KL +QL +P + L+ G RKLCF LSILG
Sbjct: 764 TVREHLEVFAAVKGLRKADASVAISRLVDSFKLHEQLNVPVQYLTAGAARKLCFVLSILG 823
Query: 936 NPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAEARWDR 1097
NP V+LLDEPSTGMDP QQQ+WQ I+ ++ E+GA H AEAEA DR
Sbjct: 824 NPPVLLLDEPSTGMDPAEQQQVWQTIQTAVKTAERGALLTTHYL-AEAEAVCDR 876
>ref|XP_003133692.2| PREDICTED: ATP-binding cassette sub-family A member 12 [Sus scrofa].
Length = 2490
Score = 116 bits (290), Expect = 3e-26
Identities = 70/195 (35%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRG-----DPL 707
IA ++S + GE GLLG NGAGK+T K++TGD P++G +L+K +
Sbjct: 2166 IAVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIKNKAGSLAHIDSHS 2225
Query: 708 GFLGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKAL 887
+GYCPQE+AL +TV+EHL + L L T
Sbjct: 2226 SLIGYCPQEDALDDLVTVEEHLYFYARVHGIPEKDIKETVYKLLGRLHLMPYKDRATSMC 2285
Query: 888 SEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTT 1067
S G KRKL AL+++G PS++LLDEPS+GMDP+ ++ +W+ I +Q K + +
Sbjct: 2286 SYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWKIISEEVQ--NKCSVILTSHS 2343
Query: 1068 WAEAEARWDRVGLMV 1112
E EA R+ +MV
Sbjct: 2344 MEECEALCTRLAIMV 2358
Score = 78.2 bits (191), Expect = 8e-15
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Frame = +3
Query: 543 IAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF--- 713
IA +++ +G + LLG NGAGK+T+I ++TG ++G + + G L
Sbjct: 1255 IAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASSGTIFVYGKDIKTDLHTVRK 1314
Query: 714 -LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTK--- 881
+G C Q + L+ LT KEHL ++ +L +++K K
Sbjct: 1315 SMGVCMQHDVLFSYLTTKEHLLLYGSIKVPHWTRK-----------QLHEEVKRTLKDTG 1363
Query: 882 ----------ALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
LS G+KRKL +++++G VV+LDEPSTG+DP ++ +W I
Sbjct: 1364 LYSHRHKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRSIWDVI 1417
>ref|XP_003354015.1| PREDICTED: ATP-binding cassette sub-family A member 7 [Sus scrofa].
Length = 2139
Score = 112 bits (280), Expect = 4e-25
Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 4/182 (2%)
Frame = +3
Query: 579 GEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSS-RGDPLGF---LGYCPQENALW 746
GE GLLG NGAGK+++ +++TGD P+ G+ +L G S DP +GYCPQ +A++
Sbjct: 1817 GECFGLLGVNGAGKTSTFRMVTGDKLPSGGEAMLAGHSVTRDPAAAHRCMGYCPQSDAIF 1876
Query: 747 PSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALS 926
LT +EHLE+F L L P S G KRKL AL+
Sbjct: 1877 ELLTGREHLELFARLRGVPEAQVAETARLGLCRLGLPQYADQPAGTYSGGNKRKLATALA 1936
Query: 927 ILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAEARWDRVGL 1106
++G+P+VV LDEP+TGMDP ++ +W ++ A +++ + + E EA R+ +
Sbjct: 1937 LVGDPAVVFLDEPTTGMDPSARRFLWNSLLAVVRQGRSVVLT--SHSMEECEALCTRLAI 1994
Query: 1107 MV 1112
MV
Sbjct: 1995 MV 1996
Score = 90.5 bits (223), Expect = 2e-18
Identities = 63/193 (32%), Positives = 93/193 (48%), Gaps = 5/193 (2%)
Frame = +3
Query: 546 AARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKG----SSRGDPLGF 713
A R +S +G + LGHNGAGK+T++ +++G PT G + G SS
Sbjct: 813 ALRGLSLDFYQGHITAFLGHNGAGKTTTLSILSGLFPPTGGSARVLGHDVRSSMAAIRPH 872
Query: 714 LGYCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSE 893
LG CPQ N L+ LTV EH+ + + L + T LS
Sbjct: 873 LGVCPQYNVLFDMLTVDEHVWFYGRLKGLSAAAVGPEQDRLLQDVGLVPKRHTQTCHLSG 932
Query: 894 GIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWA 1073
G++RKL A++ +G VV+LDEP+ G+DP ++ +W+ L K+ KG T
Sbjct: 933 GMQRKLSVAIAFVGGSRVVILDEPTAGVDPASRRGIWE----LLLKYRKGRTLILSTHHL 988
Query: 1074 -EAEARWDRVGLM 1109
EAE DRV ++
Sbjct: 989 DEAELLGDRVAVV 1001
>ref|XP_003354628.1| PREDICTED: ATP-binding cassette sub-family A member 3-like [Sus
scrofa].
Length = 1813
Score = 103 bits (258), Expect = 1e-22
Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 10/242 (4%)
Frame = +3
Query: 414 ERRRTADALNSTNFDEKPV-----IIASCLRKEYTGXXXXXXXXXXXXIAARHVSFCVRK 578
E + + ++ F+++PV I+ L KE+T +A + ++ + +
Sbjct: 502 EESQVTNITHNAYFEDEPVDLVAGIMIQHLYKEFT-------LQNTTVLAVQDLTLNMYE 554
Query: 579 GEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPL----GFLGYCPQENALW 746
G++ LLGHNGAGK+T++ ++TG +PT+G+V + G + LG CPQ++ L+
Sbjct: 555 GQITVLLGHNGAGKTTTLSILTGFYRPTSGKVYINGYDISKDMLQVRKSLGLCPQDDILF 614
Query: 747 PSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALS 926
LTV EHL + L ++ +K+LS G+KRKL ++
Sbjct: 615 SDLTVSEHLYFYCVIKGVPPEIRLKEVNTMLTSFGLLEKRDALSKSLSGGMKRKLSIIIA 674
Query: 927 ILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHT-TWAEAEARWDRVG 1103
++G VV+LDEP++GMDP ++ W LQ+H++ T EA+ DR+
Sbjct: 675 LIGGSKVVILDEPTSGMDPVSRRFTWD----VLQQHKQNRTILLTTHHMDEADFLGDRIA 730
Query: 1104 LM 1109
+M
Sbjct: 731 IM 732
Score = 101 bits (251), Expect(2) = 8e-22
Identities = 80/281 (28%), Positives = 127/281 (45%), Gaps = 10/281 (3%)
Frame = +3
Query: 210 ESRTIEPFLVSL-IPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPR-RSDVCPNXXX 383
E+ I FL+++ + L F +F+L W +T + + FF I + +
Sbjct: 1276 EADAIGRFLIAMAVTGLIFFLLIFLLETTSWTM-RTFVFRSIFFGIYKKFNKERVSMELS 1334
Query: 384 XXXXXXXVQMERRRTAD----ALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAA 551
VQ ER R + +LNST ++ L K Y A
Sbjct: 1335 VESEDEDVQNERNRILEYPQESLNST-------VLIKELAKIYFAMPAV--------FAV 1379
Query: 552 RHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPL----GFLG 719
R++S ++K E GLLG NGAGK+TS +++TG+ T+G V ++ S + +G
Sbjct: 1380 RNISVAIKKEECFGLLGLNGAGKTTSFQILTGEEVATSGDVFIEHLSITKNVLKVRSKIG 1439
Query: 720 YCPQENALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGI 899
YCPQ +AL +T +E + ++ L L+ S G
Sbjct: 1440 YCPQFDALLDYMTAREIMTMYARLWGIPEKQINHYVNKSIQSLNLEPYADKFIYTYSGGN 1499
Query: 900 KRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRAT 1022
KR+L A++++G PSV+ LDEPSTGMDP ++ +W + T
Sbjct: 1500 KRRLSTAIALMGKPSVIFLDEPSTGMDPVARRLLWNTVTQT 1540
Score = 20.8 bits (42), Expect(2) = 8e-22
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 1133 IGAIHHLKNQFG 1168
+G+ HLKN+FG
Sbjct: 1575 LGSPQHLKNKFG 1586
>ref|XP_001924499.2| PREDICTED: retinal-specific ATP-binding cassette transporter [Sus
scrofa].
Length = 2321
Score = 102 bits (255), Expect = 3e-22
Identities = 66/185 (35%), Positives = 94/185 (50%), Gaps = 4/185 (2%)
Frame = +3
Query: 570 VRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSR----GDPLGFLGYCPQEN 737
VR GE GLLG NGAGK+T+ K++TGDT T+G + G S D +GYCPQ +
Sbjct: 1954 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIADVHQSMGYCPQFD 2013
Query: 738 ALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCF 917
A+ LT +EHL ++ L L S G KRKL
Sbjct: 2014 AIDDLLTGREHLHLYARLRGVPAEEIKRVTDWSIQSLGLSLYADCLAGTYSGGNKRKLST 2073
Query: 918 ALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAEARWDR 1097
A++++G P ++LLDEP+TGMDP+ ++ +W I ++ E A + E EA R
Sbjct: 2074 AIALIGCPPLLLLDEPTTGMDPQARRMLWNTIMGIIR--EGRAVVLTSHSMEECEALCTR 2131
Query: 1098 VGLMV 1112
+ +MV
Sbjct: 2132 LAIMV 2136
Score = 89.4 bits (220), Expect = 4e-18
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Frame = +3
Query: 576 KGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPLGF----LGYCPQENAL 743
+ ++ LGHNGAGK+T++ ++TG PT+G VL+ G L LG CPQ N L
Sbjct: 955 ENQITAFLGHNGAGKTTTLSIMTGLLPPTSGTVLVGGKDIETSLDAIRQSLGLCPQHNIL 1014
Query: 744 WPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFAL 923
+ LTV EH+ + L + + LS G++RKL A+
Sbjct: 1015 FHHLTVAEHILFYAQLKGKPWEEAQLETEAMLEDTGLHHKRNEEAQHLSGGMQRKLSVAI 1074
Query: 924 SILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
+ +G+ VV+LDEP++G+DP ++ +W +
Sbjct: 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLL 1104
>ref|XP_003124604.2| PREDICTED: ATP-binding cassette sub-family A member 3-like [Sus
scrofa].
Length = 1243
Score = 100 bits (250), Expect = 1e-21
Identities = 80/272 (29%), Positives = 123/272 (45%), Gaps = 8/272 (2%)
Frame = +3
Query: 222 IEPFLVSLIPF-LHFITFLFILRCLEWKFGKTSMRKDPF--FRI-SPRRSDVCPNXXXXX 389
I FL+SL L F+ LF L W K F ++I R+
Sbjct: 833 IAKFLISLAALGLIFLLLLFCLESTFWSLKNFFFHKIVFAVYKIFRKRKKATVSTQVINE 892
Query: 390 XXXXXVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGXXXXXXXXXXXXIAARHVSFC 569
V+ ER+R L PV+++ L+K Y +A R+VS
Sbjct: 893 YVDKDVENERKRVLALL--PKLKAAPVLLSD-LQKIY--------FKCPVVMAVRNVSLL 941
Query: 570 VRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSRGDPL----GFLGYCPQEN 737
V+K E GLLG NGAGK+T K++TG+ T+G VL+K ++ + + +GYCPQ +
Sbjct: 942 VQKYECFGLLGLNGAGKTTIFKMLTGEETLTSGVVLIKDNNITENIRKVRSRIGYCPQAD 1001
Query: 738 ALWPSLTVKEHLEVFXXXXXXXXXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCF 917
+ +T +E L ++ + ++D S G KRKL
Sbjct: 1002 TMLNHMTGRELLIMYARLWGVPEPDISMYVEAFLHSMHIEDHADKLVHTYSGGNKRKLNT 1061
Query: 918 ALSILGNPSVVLLDEPSTGMDPEGQQQMWQAI 1013
A++++G SV+ LDEPSTGMDP + ++W +
Sbjct: 1062 AIALMGKSSVIFLDEPSTGMDPVARHRLWDTV 1093
Score = 73.2 bits (178), Expect = 3e-13
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Frame = +3
Query: 636 VITGDTKPTAGQVLLKGSSRGDPLGFL----GYCPQENALWPSLTVKEHLEVFXXXXXXX 803
+ G +PT G+V + G + + G+CPQ + L+ LT+ EH+ +
Sbjct: 127 IFVGCYRPTRGEVCIYGYDISKNIREIRENMGFCPQHDLLFNDLTLSEHIFFYSVVKRIQ 186
Query: 804 XXXXXXXXXXXXXXLKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDP 983
L ++ +++L+ G+KRKL +++LG+P VV+LDEPS+GMDP
Sbjct: 187 QKIPPLEVDNMLSTFNLLEKRDTFSESLTGGMKRKLSIIIALLGSPKVVILDEPSSGMDP 246
Query: 984 EGQQQMWQAIRATLQKHEKGAPS*PHTTWAEAEARWDRVGLMV 1112
++ W ++ KH++ H EA+ DR+ +MV
Sbjct: 247 VSRRATWDVLQQF--KHKRTILLTSH-YMDEADILGDRIAIMV 286
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,637,842
Number of extensions: 882092
Number of successful extensions: 6601
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6274
Number of HSP's successfully gapped: 28
Length of query: 390
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 289
Effective length of database: 8,829,335
Effective search space: 2551677815
Effective search space used: 2551677815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004361
(1170 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 307 7e-81
gb|JH118785.1| Sus scrofa unplaced genomic scaffold ChrUScaf2416 299 2e-78
>Sscrofa_Chr12
|| Length = 63588571
Score = 307 bits (155), Expect = 7e-81
Identities = 161/163 (98%)
Strand = Plus / Plus
Query: 668 gcaggtgctcctgaaagggagcagcagaggggacccgctgggcttcctggggtactgtcc 727
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11965291 gcaggtgctcctgaaagggagcagcggaggggacccgctgggcttcctggggtactgtcc 11965350
Query: 728 ccaggagaacgcgctgtggcccagcctgacggtgaaggagcatctggaggtgttcgccgc 787
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 11965351 ccaggagaacgcgctgtggcccagcctgacggtgaaggagcatttggaggtgttcgccgc 11965410
Query: 788 cgtgaaggggctgaggaaagcggacgctgccgcggccatcgcg 830
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11965411 cgtgaaggggctgaggaaagcggacgctgccgcggccatcgcg 11965453
Score = 291 bits (147), Expect = 4e-76
Identities = 162/167 (97%)
Strand = Plus / Minus
Query: 668 gcaggtgctcctgaaagggagcagcagaggggacccgctgggcttcctggggtactgtcc 727
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 11740776 gcaggtgctcctgaaagggagcagcggaggggaccccctgggcttcctggggtactgtcc 11740717
Query: 728 ccaggagaacgcgctgtggcccagcctgacggtgaaggagcatctggaggtgttcgccgc 787
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11740716 ccaggaggacgcgctgtggcccagcctgacggtgaaggagcatctggaggtgttcgccgc 11740657
Query: 788 cgtgaaggggctgaggaaagcggacgctgccgcggccatcgcgcggt 834
||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 11740656 cgtgaaggggctgaggaaagcggacgccgccgcggccatcgagcggt 11740610
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 338 tagaatttctccaagaaggagcgatgtgtgtccaaatccagaagagccagaaggggaaga 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11961300 tagaatttctccaagaaggagcgatgtgtgtccaaatccagaagagccagaaggggaaga 11961359
Query: 398 tgaagatgttcagatggaaagaaggagaacagcagatgccctgaattccacgaatttcga 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11961360 tgaagatgttcagatggaaagaaggagaacagcagatgccctgaattccacgaatttcga 11961419
Query: 458 tgag 461
||||
Sbjct: 11961420 tgag 11961423
Score = 234 bits (118), Expect = 9e-59
Identities = 121/122 (99%)
Strand = Plus / Plus
Query: 460 agaaacctgtcattatcgccagctgtctacgcaaggagtacacagggaaaaggaaacgct 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11962344 agaaacctgtcattatcgccagctgtctacgcaaggagtacacagggaaaaggaaacgct 11962403
Query: 520 gcttgtccaagaggaagaagaaaatagccgcaagacatgtctctttctgtgttaggaaag 579
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11962404 gcttgtccaagaggaagaaaaaaatagccgcaagacatgtctctttctgtgttaggaaag 11962463
Query: 580 gt 581
||
Sbjct: 11962464 gt 11962465
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 907 agctgtgcttcgcgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11966044 agctgtgcttcgcgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 11966103
Query: 967 ccacggggatggaccccgaggggcagcagcagatgtgg 1004
||||||||||||||||||||||||||||||||||||||
Sbjct: 11966104 ccacggggatggaccccgaggggcagcagcagatgtgg 11966141
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 578 aggtgaggttttaggattattaggacacaatggagctggtaaaagtacatccattaaagt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11963422 aggtgaggttttaggattattaggacacaatggagctggtaaaagtacatccattaaagt 11963481
Query: 638 gataactggagacacaaaaccaactgctgggcaggt 673
||||||||||||||||||||||||||||||||||||
Sbjct: 11963482 gataactggagacacaaaaccaactgctgggcaggt 11963517
Score = 178 bits (90), Expect = 4e-42
Identities = 96/98 (97%)
Strand = Plus / Minus
Query: 907 agctgtgcttcgcgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 966
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11739115 agctgtgcttcacgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 11739056
Query: 967 ccacggggatggaccccgaggggcagcagcagatgtgg 1004
|||||||||||||||| |||||||||||||||||||||
Sbjct: 11739055 ccacggggatggaccctgaggggcagcagcagatgtgg 11739018
Score = 163 bits (82), Expect = 3e-37
Identities = 94/98 (95%)
Strand = Plus / Plus
Query: 907 agctgtgcttcgcgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 966
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 11666672 agctgtgcttcgcgctgagcatcctgggaaacccgtcgctggtgcttctggacgagccat 11666731
Query: 967 ccacggggatggaccccgaggggcagcagcagatgtgg 1004
||||||| |||||||||||||||||||||||| |||||
Sbjct: 11666732 ccacgggcatggaccccgaggggcagcagcaggtgtgg 11666769
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 832 ggttggtggatgcgctcaagctgcaggaccagctgaagctccccacgaaggccttgtccg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11965899 ggttggtggatgcgctcaagctgcaggaccagctgaagctccccacgaaggccttgtccg 11965958
Query: 892 agggaataaagaggaag 908
|||||||||||||||||
Sbjct: 11965959 agggaataaagaggaag 11965975
Score = 145 bits (73), Expect = 6e-32
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 832 ggttggtggatgcgctcaagctgcaggaccagctgaagctccccacgaaggccttgtccg 891
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11666527 ggttggtggatgcgctcaagctgcaggaccagctgaagctccccacgaaggcctcgtccg 11666586
Query: 892 agggaataaagaggaag 908
|||||||||||||||||
Sbjct: 11666587 agggaataaagaggaag 11666603
Score = 137 bits (69), Expect = 2e-29
Identities = 75/77 (97%)
Strand = Plus / Minus
Query: 832 ggttggtggatgcgctcaagctgcaggaccagctgaagctccccacgaaggccttgtccg 891
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11739260 ggttggtggatgcactcaagctgcaggaccagctgaagctccccacaaaggccttgtccg 11739201
Query: 892 agggaataaagaggaag 908
|||||||||||||||||
Sbjct: 11739200 agggaataaagaggaag 11739184
Score = 107 bits (54), Expect = 1e-20
Identities = 99/110 (90%), Gaps = 3/110 (2%)
Strand = Plus / Plus
Query: 1003 ggcaggcgatccgggccacccttcaaaaacacgaaaagggggccccctcctgaccacaca 1062
|||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||||||
Sbjct: 11966836 ggcaggcgatccgggccacc-ttcaaaaacacggagagggg-cgccctcctgaccacaca 11966893
Query: 1063 ctacatgggccgaggccgaggcccggtgggaccgcgtgggcctcatggtg 1112
|||||| |||||||||||||||| ||| |||||||||| | ||||||||
Sbjct: 11966894 ctacat-ggccgaggccgaggccgtgtgtgaccgcgtggccatcatggtg 11966942
Score = 103 bits (52), Expect = 2e-19
Identities = 61/64 (95%)
Strand = Plus / Minus
Query: 907 agctgtgcttcgcgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 966
|||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 11722098 agctgtgctttgtgctgagcgtcctgggaaacccgtcggtggtgcttctggacgagccgt 11722039
Query: 967 ccac 970
||||
Sbjct: 11722038 ccac 11722035
Score = 99.6 bits (50), Expect = 3e-18
Identities = 98/110 (89%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 1003 ggcaggcgatccgggccacccttcaaaaacacgaaaagggggccccctcctgaccacaca 1062
|||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||| ||
Sbjct: 11737461 ggcaggcgatccgggccacc-ttcaaaaacacggagagggg-cgccctcctgaccacgca 11737404
Query: 1063 ctacatgggccgaggccgaggcccggtgggaccgcgtgggcctcatggtg 1112
|||||||| |||||||||||||| ||| |||||||||| | ||||||||
Sbjct: 11737403 ctacatgg-ccgaggccgaggccgtgtgtgaccgcgtggccatcatggtg 11737355
Score = 97.6 bits (49), Expect = 1e-17
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 711 ttcctggggtactgtccccaggagaacgcgctgtggcccagcctgacggtgaaggagcat 770
|||||||||||||| || |||||||||| ||||||||| |||||| |||| ||| ||
Sbjct: 11498601 ttcctggggtactgccctcaggagaacgtgctgtggcctgtcctgacagtgagggaacac 11498542
Query: 771 ctggaggtgttcgccgccgtgaaggggctgaggaaagcgga 811
|||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 11498541 ctggaggtcttcgccgctgtgaaagggctgaggaaagcgga 11498501
Score = 97.6 bits (49), Expect = 1e-17
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 711 ttcctggggtactgtccccaggagaacgcgctgtggcccagcctgacggtgaaggagcat 770
|||||||||||||| || |||||||||| ||||||||| |||||| |||| ||| ||
Sbjct: 11621852 ttcctggggtactgccctcaggagaacgtgctgtggcctgtcctgacagtgagggaacac 11621793
Query: 771 ctggaggtgttcgccgccgtgaaggggctgaggaaagcgga 811
|||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 11621792 ctggaggtcttcgccgctgtgaaagggctgaggaaagcgga 11621752
Score = 97.6 bits (49), Expect = 1e-17
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 597 ttaggacacaatggagctggtaaaagtacatccattaaagtgataactggagacacaaaa 656
||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||
Sbjct: 11742954 ttaggacacaatggagcaggtaaaagtacaactattaagatgataactggagacacaaag 11742895
Query: 657 ccaactgctgggcaggt 673
|||||||| ||||||||
Sbjct: 11742894 ccaactgcggggcaggt 11742878
Score = 97.6 bits (49), Expect = 1e-17
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 711 ttcctggggtactgtccccaggagaacgcgctgtggcccagcctgacggtgaaggagcat 770
|||||||||||||| || |||||||||| ||||||||| |||||| |||| ||| ||
Sbjct: 11812648 ttcctggggtactgccctcaggagaacgtgctgtggcctgtcctgacagtgagggaacac 11812589
Query: 771 ctggaggtgttcgccgccgtgaaggggctgaggaaagcgga 811
|||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 11812588 ctggaggtcttcgccgctgtgaaagggctgaggaaagcgga 11812548
Score = 83.8 bits (42), Expect = 2e-13
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 460 agaaacctgtcattatcgccagctgtctacgcaaggagtacacagggaaaaggaaacgct 519
||||||| || |||||||||||||||||||| ||||| || |||| |||| || | ||
Sbjct: 11743781 agaaaccagttattatcgccagctgtctacggaaggaatatgcaggcaaaaagagaaact 11743722
Query: 520 gcttgtccaagaggaagaagaaaatagccgcaagacatgtctctttctgtgtta 573
|||| ||| ||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 11743721 gctttgccaggaggaagaagaaagtagccacaagaaatatctctttctgtgtta 11743668
Score = 71.9 bits (36), Expect = 8e-10
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 832 ggttggtggatgcgctcaagctgcaggaccagctgaagct 871
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11722232 ggttggtggatgcactcaagctgcaggaccagctgaagct 11722193
Score = 63.9 bits (32), Expect = 2e-07
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 1041 ggggccccctcctgaccacacactacatgggccgaggccgaggcccggtgggaccgcgtg 1100
||||| ||||||||||||| |||||| ||| |||||||||||||| ||| |||||||||
Sbjct: 11619372 ggggcgccctcctgaccacccactacctgg-ccgaggccgaggccgtgtgtgaccgcgtg 11619314
Query: 1101 ggcctcatggtg 1112
| | ||||||||
Sbjct: 11619313 gccatcatggtg 11619302
Score = 63.9 bits (32), Expect = 2e-07
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 249 cctttccttcattttatcacctttctttttattcttcgatgtctggaatggaagtttggg 308
|||| |||||||||| ||| || || ||| |||| |||||||||||| ||| ||| ||
Sbjct: 11746002 ccttaccttcattttttcattttcctctttgttctacgatgtctggaaatgaactttagg 11745943
Query: 309 aagacgtcaatgagaaaggatccc 332
|||| |||||||||||||||||||
Sbjct: 11745942 aagaagtcaatgagaaaggatccc 11745919
Score = 63.9 bits (32), Expect = 2e-07
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 1041 ggggccccctcctgaccacacactacatgggccgaggccgaggcccggtgggaccgcgtg 1100
||||| ||||||||||||| |||||| ||| |||||||||||||| ||| |||||||||
Sbjct: 11810168 ggggcgccctcctgaccacccactacctgg-ccgaggccgaggccgtgtgtgaccgcgtg 11810110
Query: 1101 ggcctcatggtg 1112
| | ||||||||
Sbjct: 11810109 gccatcatggtg 11810098
Score = 61.9 bits (31), Expect = 7e-07
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 519 tgcttgtccaagaggaagaagaaaatagccgcaagacatgtctctttctgtgtta 573
||||| || |||||||||||||||||||| |||||| || |||| ||||||||||
Sbjct: 11500103 tgcttttcaaagaggaagaagaaaatagcagcaagaaatatctccttctgtgtta 11500049
Score = 61.9 bits (31), Expect = 7e-07
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 519 tgcttgtccaagaggaagaagaaaatagccgcaagacatgtctctttctgtgtta 573
||||| || |||||||||||||||||||| |||||| || |||| ||||||||||
Sbjct: 11623355 tgcttttcaaagaggaagaagaaaatagcagcaagaaatatctccttctgtgtta 11623301
Score = 61.9 bits (31), Expect = 7e-07
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 519 tgcttgtccaagaggaagaagaaaatagccgcaagacatgtctctttctgtgtta 573
||||| || |||||||||||||||||||| |||||| || |||| ||||||||||
Sbjct: 11814150 tgcttttcaaagaggaagaagaaaatagcagcaagaaatatctccttctgtgtta 11814096
>gb|JH118785.1| Sus scrofa unplaced genomic scaffold ChrUScaf2416
Length = 203529
Score = 299 bits (151), Expect = 2e-78
Identities = 160/163 (98%)
Strand = Plus / Plus
Query: 668 gcaggtgctcctgaaagggagcagcagaggggacccgctgggcttcctggggtactgtcc 727
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 164388 gcaggtgctcctgaaagggagcagcggaggggacccgctgggcttcctggggtactgtcc 164447
Query: 728 ccaggagaacgcgctgtggcccagcctgacggtgaaggagcatctggaggtgttcgccgc 787
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 164448 ccaggagaacgcgctgtggcccagcctgacggtgaaggagcatttggaggtgttcggcgc 164507
Query: 788 cgtgaaggggctgaggaaagcggacgctgccgcggccatcgcg 830
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164508 cgtgaaggggctgaggaaagcggacgctgccgcggccatcgcg 164550
Score = 291 bits (147), Expect = 4e-76
Identities = 162/167 (97%)
Strand = Plus / Plus
Query: 668 gcaggtgctcctgaaagggagcagcagaggggacccgctgggcttcctggggtactgtcc 727
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 88913 gcaggtgctcctgaaagggagcagcggaggggaccccctgggcttcctggggtactgtcc 88972
Query: 728 ccaggagaacgcgctgtggcccagcctgacggtgaaggagcatctggaggtgttcgccgc 787
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88973 ccaggaggacgcgctgtggcccagcctgacggtgaaggagcatctggaggtgttcgccgc 89032
Query: 788 cgtgaaggggctgaggaaagcggacgctgccgcggccatcgcgcggt 834
||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 89033 cgtgaaggggctgaggaaagcggacgccgccgcggccatcgagcggt 89079
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 338 tagaatttctccaagaaggagcgatgtgtgtccaaatccagaagagccagaaggggaaga 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160573 tagaatttctccaagaaggagcgatgtgtgtccaaatccagaagagccagaaggggaaga 160632
Query: 398 tgaagatgttcagatggaaagaaggagaacagcagatgccctgaattccacgaatttcga 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160633 tgaagatgttcagatggaaagaaggagaacagcagatgccctgaattccacgaatttcga 160692
Query: 458 tgag 461
||||
Sbjct: 160693 tgag 160696
Score = 234 bits (118), Expect = 9e-59
Identities = 121/122 (99%)
Strand = Plus / Plus
Query: 460 agaaacctgtcattatcgccagctgtctacgcaaggagtacacagggaaaaggaaacgct 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161617 agaaacctgtcattatcgccagctgtctacgcaaggagtacacagggaaaaggaaacgct 161676
Query: 520 gcttgtccaagaggaagaagaaaatagccgcaagacatgtctctttctgtgttaggaaag 579
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 161677 gcttgtccaagaggaagaaaaaaatagccgcaagacatgtctctttctgtgttaggaaag 161736
Query: 580 gt 581
||
Sbjct: 161737 gt 161738
Score = 230 bits (116), Expect = 1e-57
Identities = 119/120 (99%)
Strand = Plus / Plus
Query: 63 atcaccatcctcgctgtgcttggacttctgtttgatgacagtgagcacagtgccttgtac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156318 atcaccatcctcgctgtgcttggacttctgtttgatgacagtgagcacagtgccttgtac 156377
Query: 123 gccgttgcctttttaataccgcaggccacattaattggctacctgttcttagttttccat 182
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156378 gccattgcctttttaataccgcaggccacattaattggctacctgttcttagttttccat 156437
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 907 agctgtgcttcgcgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165141 agctgtgcttcgcgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 165200
Query: 967 ccacggggatggaccccgaggggcagcagcagatgtgg 1004
||||||||||||||||||||||||||||||||||||||
Sbjct: 165201 ccacggggatggaccccgaggggcagcagcagatgtgg 165238
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 578 aggtgaggttttaggattattaggacacaatggagctggtaaaagtacatccattaaagt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162695 aggtgaggttttaggattattaggacacaatggagctggtaaaagtacatccattaaagt 162754
Query: 638 gataactggagacacaaaaccaactgctgggcaggt 673
||||||||||||||||||||||||||||||||||||
Sbjct: 162755 gataactggagacacaaaaccaactgctgggcaggt 162790
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 249 cctttccttcattttatcacctttctttttattcttcgatgtctggaatggaagtttggg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158991 cctttccttcattttatcacctttctttttattcttcgatgtctggaatggaagtttggg 159050
Query: 309 aagacgtcaatgagaaaggatcccttctttag 340
||||||||||||||||||||||||||||||||
Sbjct: 159051 aagacgtcaatgagaaaggatcccttctttag 159082
Score = 178 bits (90), Expect = 4e-42
Identities = 96/98 (97%)
Strand = Plus / Plus
Query: 907 agctgtgcttcgcgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 966
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90483 agctgtgcttcacgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 90542
Query: 967 ccacggggatggaccccgaggggcagcagcagatgtgg 1004
|||||||||||||||| |||||||||||||||||||||
Sbjct: 90543 ccacggggatggaccctgaggggcagcagcagatgtgg 90580
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 832 ggttggtggatgcgctcaagctgcaggaccagctgaagctccccacgaaggccttgtccg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164996 ggttggtggatgcgctcaagctgcaggaccagctgaagctccccacgaaggccttgtccg 165055
Query: 892 agggaataaagaggaag 908
|||||||||||||||||
Sbjct: 165056 agggaataaagaggaag 165072
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 183 ttttccatgttttattaccttgatgaagaatcaagaaccattgagccatttttggtatcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157910 ttttccatgttttattaccttgatgaagaatcaagaaccattgagccatttttggtatcc 157969
Query: 243 ctgatc 248
||||||
Sbjct: 157970 ctgatc 157975
Score = 129 bits (65), Expect = 4e-27
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 832 ggttggtggatgcgctcaagctgcaggaccagctgaagctccccacgaaggccttgtccg 891
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 90338 ggttggtggatgcactcaagctgcaggaccagctgaagctccccacaaaggccttgtccc 90397
Query: 892 agggaataaagaggaag 908
|||||||||||||||||
Sbjct: 90398 agggaataaagaggaag 90414
Score = 103 bits (52), Expect = 2e-19
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 907 agctgtgcttcgcgctgagcatcctgggaaacccgtcggtggtgcttctggacgagccgt 966
|||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 101013 agctgtgctttgtgctgagcgtcctgggaaacccgtcggtggtgcttctggacgagccgt 101072
Query: 967 ccac 970
||||
Sbjct: 101073 ccac 101076
Score = 97.6 bits (49), Expect = 1e-17
Identities = 88/101 (87%)
Strand = Plus / Plus
Query: 711 ttcctggggtactgtccccaggagaacgcgctgtggcccagcctgacggtgaaggagcat 770
|||||||||||||| || |||||||||| ||||||||| |||||| |||| ||| ||
Sbjct: 19619 ttcctggggtactgccctcaggagaacgtgctgtggcctgtcctgacagtgagggaacac 19678
Query: 771 ctggaggtgttcgccgccgtgaaggggctgaggaaagcgga 811
|||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 19679 ctggaggtcttcgccgctgtgaaagggctgaggaaagcgga 19719
Score = 97.6 bits (49), Expect = 1e-17
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 597 ttaggacacaatggagctggtaaaagtacatccattaaagtgataactggagacacaaaa 656
||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||
Sbjct: 86735 ttaggacacaatggagcaggtaaaagtacaactattaagatgataactggagacacaaag 86794
Query: 657 ccaactgctgggcaggt 673
|||||||| ||||||||
Sbjct: 86795 ccaactgcggggcaggt 86811
Score = 83.8 bits (42), Expect = 2e-13
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 460 agaaacctgtcattatcgccagctgtctacgcaaggagtacacagggaaaaggaaacgct 519
||||||| || |||||||||||||||||||| ||||| || |||| |||| || | ||
Sbjct: 85908 agaaaccagttattatcgccagctgtctacggaaggaatatgcaggcaaaaagagaaact 85967
Query: 520 gcttgtccaagaggaagaagaaaatagccgcaagacatgtctctttctgtgtta 573
|||| ||| ||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 85968 gctttgccaggaggaagaagaaagtagccacaagaaatatctctttctgtgtta 86021
Score = 71.9 bits (36), Expect = 8e-10
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 832 ggttggtggatgcgctcaagctgcaggaccagctgaagct 871
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 100879 ggttggtggatgcactcaagctgcaggaccagctgaagct 100918
Score = 63.9 bits (32), Expect = 2e-07
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 249 cctttccttcattttatcacctttctttttattcttcgatgtctggaatggaagtttggg 308
|||| |||||||||| ||| || || ||| |||| |||||||||||| ||| ||| ||
Sbjct: 83687 ccttaccttcattttttcattttcctctttgttctacgatgtctggaaatgaactttagg 83746
Query: 309 aagacgtcaatgagaaaggatccc 332
|||| |||||||||||||||||||
Sbjct: 83747 aagaagtcaatgagaaaggatccc 83770
Score = 61.9 bits (31), Expect = 7e-07
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 519 tgcttgtccaagaggaagaagaaaatagccgcaagacatgtctctttctgtgtta 573
||||| || |||||||||||||||||||| |||||| || |||| ||||||||||
Sbjct: 18117 tgcttttcaaagaggaagaagaaaatagcagcaagaaatatctccttctgtgtta 18171
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,703,045
Number of extensions: 361
Number of successful extensions: 361
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 45
Length of query: 1170
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1149
Effective length of database: 2,808,413,156
Effective search space: 3226866716244
Effective search space used: 3226866716244
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)