Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004407
(926 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030215.1| beta-galactosidase precursor [Bos taurus]. 447 e-126
Alignment gi|NP_001192931.1| beta-galactosidase-1-like protein [Bos tauru... 317 9e-87
Alignment gi|XP_002685627.1| PREDICTED: galactosidase, beta 1-like [Bos t... 317 9e-87
Alignment gi|XP_002693892.1| PREDICTED: galactosidase, beta 1-like [Bos t... 193 2e-49
Alignment gi|XP_597358.2| PREDICTED: galactosidase, beta 1-like [Bos taur... 193 2e-49
Alignment gi|XP_002693891.1| PREDICTED: galactosidase, beta 1-like [Bos t... 190 1e-48
Alignment gi|XP_600640.5| PREDICTED: galactosidase, beta 1-like [Bos taur... 190 1e-48
>ref|NP_001030215.1| beta-galactosidase precursor [Bos taurus].
Length = 653
Score = 447 bits (1149), Expect = e-126
Identities = 210/276 (76%), Positives = 232/276 (84%)
Frame = +1
Query: 97 MPGVVHIXXXXXXXXXXXXXXXXKNAPLRTFKIDYNRNCFLKDGQPFRYISGSIHYFRMP 276
MPGVV + NA RTF+IDY RN FLKDGQPFRYISGSIHYFR+P
Sbjct: 1 MPGVVRLLALLLVPLLLGSARGLHNATQRTFQIDYRRNRFLKDGQPFRYISGSIHYFRVP 60
Query: 277 RFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTGDHDVEYFIRLAHQLGLLVILR 456
RFYWKDRLLKMKMAGLNAI+TYVAWNFHE PG+Y F+GDHDVE+FI+LAH+LGLLVILR
Sbjct: 61 RFYWKDRLLKMKMAGLNAIQTYVAWNFHELQPGRYNFSGDHDVEHFIQLAHELGLLVILR 120
Query: 457 PGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDKWLGVLLPKMKPLLYQNGGPII 636
PGPYICAEWDMGGLPAWLLEK+SIVLRSS PDYLAAVDKWLGVLLPKM+PLLY+NGGPII
Sbjct: 121 PGPYICAEWDMGGLPAWLLEKKSIVLRSSDPDYLAAVDKWLGVLLPKMRPLLYKNGGPII 180
Query: 637 TVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTTDGAHEKFLACGTLEGLYATVD 816
TVQVENEYGSY SCDY+YLRFLQKRFH +LGEDV+LFTTDG +E+ L CG L+GLYATVD
Sbjct: 181 TVQVENEYGSYLSCDYDYLRFLQKRFHDHLGEDVLLFTTDGVNERLLQCGALQGLYATVD 240
Query: 817 FGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
F N+TAAF +QRK+EP P +SE YTGW HW
Sbjct: 241 FSPGTNLTAAFMLQRKFEPTGPLVNSEFYTGWLDHW 276
>ref|NP_001192931.1| beta-galactosidase-1-like protein [Bos taurus].
Length = 647
Score = 317 bits (812), Expect = 9e-87
Identities = 149/251 (59%), Positives = 183/251 (72%)
Frame = +1
Query: 172 APLRTFKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAW 351
A R+F +D + N FL DG PFRY+SGS+HYFR+PR W DRLLKM+M+GLN ++ YV W
Sbjct: 24 ADARSFVVDRDHNRFLLDGAPFRYVSGSLHYFRVPRVLWADRLLKMRMSGLNVVQFYVPW 83
Query: 352 NFHEPWPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIV 531
N+HEP PG Y F G D+ F++ A LLVILRPGPYICAEW+MGGLPAWLL K I
Sbjct: 84 NYHEPEPGVYNFNGSRDLFAFLKEATLANLLVILRPGPYICAEWEMGGLPAWLLRKPKIH 143
Query: 532 LRSSHPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKR 711
LR+S PD+LAAVD W VLLP++ P LY NGG II++QVENEYGSY +CD +Y+R L
Sbjct: 144 LRTSDPDFLAAVDSWFKVLLPRIYPWLYHNGGNIISIQVENEYGSYRACDVSYMRHLAGL 203
Query: 712 FHYYLGEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDH 891
F LG+ ++LFTTDG + L CG+L+GLY TVDFG N+T F + RKYEPR P +
Sbjct: 204 FRALLGDRILLFTTDG--PEGLKCGSLQGLYTTVDFGPADNMTKIFGLLRKYEPRGPLVN 261
Query: 892 SEIYTGWXRHW 924
SE YTGW +W
Sbjct: 262 SEYYTGWLDYW 272
>ref|XP_002685627.1| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 647
Score = 317 bits (812), Expect = 9e-87
Identities = 149/251 (59%), Positives = 183/251 (72%)
Frame = +1
Query: 172 APLRTFKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAW 351
A R+F +D + N FL DG PFRY+SGS+HYFR+PR W DRLLKM+M+GLN ++ YV W
Sbjct: 24 ADARSFVVDRDHNRFLLDGAPFRYVSGSLHYFRVPRVLWADRLLKMRMSGLNVVQFYVPW 83
Query: 352 NFHEPWPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIV 531
N+HEP PG Y F G D+ F++ A LLVILRPGPYICAEW+MGGLPAWLL K I
Sbjct: 84 NYHEPEPGVYNFNGSRDLFAFLKEATLANLLVILRPGPYICAEWEMGGLPAWLLRKPKIH 143
Query: 532 LRSSHPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKR 711
LR+S PD+LAAVD W VLLP++ P LY NGG II++QVENEYGSY +CD +Y+R L
Sbjct: 144 LRTSDPDFLAAVDSWFKVLLPRIYPWLYHNGGNIISIQVENEYGSYRACDVSYMRHLAGL 203
Query: 712 FHYYLGEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDH 891
F LG+ ++LFTTDG + L CG+L+GLY TVDFG N+T F + RKYEPR P +
Sbjct: 204 FRALLGDRILLFTTDG--PEGLKCGSLQGLYTTVDFGPADNMTKIFGLLRKYEPRGPLVN 261
Query: 892 SEIYTGWXRHW 924
SE YTGW +W
Sbjct: 262 SEYYTGWLDYW 272
>ref|XP_002693892.1| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 758
Score = 193 bits (491), Expect = 2e-49
Identities = 101/237 (42%), Positives = 148/237 (62%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F + F GS+HYFR+PR YW+DRLLK++ GLN + TYV WN HEP G + F+G
Sbjct: 176 FKLENSAFWIFGGSVHYFRVPRAYWRDRLLKLRACGLNTLTTYVPWNLHEPERGTFDFSG 235
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E FI LA ++GL VILRPGPYIC+E D+GGLP+WLL + LR+++ + AVD
Sbjct: 236 NLDLEAFILLAAEVGLWVILRPGPYICSEVDLGGLPSWLLRDPDMRLRTTYKGFTEAVDL 295
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+ ++ PL Y++GGPII VQVENEYGS Y+ D Y+ +++K G +L T+
Sbjct: 296 YFDHLMLRVVPLQYKHGGPIIAVQVENEYGS-YNKDPAYMPYIKKALQ-DRGIAELLLTS 353
Query: 754 DGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
D ++ L G L+G+ AT++ + + ++ + +P E +TGW W
Sbjct: 354 D--NQGGLKSGVLDGVLATINLQSQSELQLFTTILLGAQGSQPKMVMEYWTGWFDSW 408
>ref|XP_597358.2| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 758
Score = 193 bits (491), Expect = 2e-49
Identities = 101/237 (42%), Positives = 148/237 (62%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F + F GS+HYFR+PR YW+DRLLK++ GLN + TYV WN HEP G + F+G
Sbjct: 176 FKLENSAFWIFGGSVHYFRVPRAYWRDRLLKLRACGLNTLTTYVPWNLHEPERGTFDFSG 235
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E FI LA ++GL VILRPGPYIC+E D+GGLP+WLL + LR+++ + AVD
Sbjct: 236 NLDLEAFILLAAEVGLWVILRPGPYICSEVDLGGLPSWLLRDPDMRLRTTYKGFTEAVDL 295
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+ ++ PL Y++GGPII VQVENEYGS Y+ D Y+ +++K G +L T+
Sbjct: 296 YFDHLMLRVVPLQYKHGGPIIAVQVENEYGS-YNKDPAYMPYIKKALQ-DRGIAELLLTS 353
Query: 754 DGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
D ++ L G L+G+ AT++ + + ++ + +P E +TGW W
Sbjct: 354 D--NQGGLKSGVLDGVLATINLQSQSELQLFTTILLGAQGSQPKMVMEYWTGWFDSW 408
>ref|XP_002693891.1| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 899
Score = 190 bits (483), Expect = 1e-48
Identities = 101/240 (42%), Positives = 146/240 (60%), Gaps = 3/240 (1%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F +G F + GS+HYFR+PR W+DRLLK++ G N + TYV WN HEP G + F+G
Sbjct: 321 FTLEGHEFLILGGSVHYFRVPRASWRDRLLKLRACGFNTVTTYVPWNLHEPERGTFDFSG 380
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E FI LA ++GL VILRPGPYIC+E D+GGLP+WLL+ + LR+++ ++ AV+K
Sbjct: 381 NLDLEAFILLAEEVGLWVILRPGPYICSEMDLGGLPSWLLQDPTSQLRTTNRSFVNAVNK 440
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+P++ L Y GGPII VQVENEYG +Y D Y+ +L + G +L T
Sbjct: 441 YFDHLIPRVALLQYLQGGPIIAVQVENEYGFFYK-DEAYMPYLLQALQ-QRGIGGLLLTA 498
Query: 754 DGAHEKFLACGTLEGLYATVD---FGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
D E + G ++G+ A+++ F VD +F K + +P E + GW W
Sbjct: 499 DSTEE--VMRGHIKGVLASINMKGFKVD-----SFKHLYKLQRHKPILIMEFWVGWFDTW 551
>ref|XP_600640.5| PREDICTED: galactosidase, beta 1-like [Bos taurus].
Length = 899
Score = 190 bits (483), Expect = 1e-48
Identities = 101/240 (42%), Positives = 146/240 (60%), Gaps = 3/240 (1%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F +G F + GS+HYFR+PR W+DRLLK++ G N + TYV WN HEP G + F+G
Sbjct: 321 FTLEGHEFLILGGSVHYFRVPRASWRDRLLKLRACGFNTVTTYVPWNLHEPERGTFDFSG 380
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E FI LA ++GL VILRPGPYIC+E D+GGLP+WLL+ + LR+++ ++ AV+K
Sbjct: 381 NLDLEAFILLAEEVGLWVILRPGPYICSEMDLGGLPSWLLQDPTSQLRTTNRSFVNAVNK 440
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+P++ L Y GGPII VQVENEYG +Y D Y+ +L + G +L T
Sbjct: 441 YFDHLIPRVALLQYLQGGPIIAVQVENEYGFFYK-DEAYMPYLLQALQ-QRGIGGLLLTA 498
Query: 754 DGAHEKFLACGTLEGLYATVD---FGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
D E + G ++G+ A+++ F VD +F K + +P E + GW W
Sbjct: 499 DSTEE--VMRGHIKGVLASINMKGFKVD-----SFKHLYKLQRHKPILIMEFWVGWFDTW 551
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,963,138
Number of extensions: 1201247
Number of successful extensions: 6497
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6412
Number of HSP's successfully gapped: 7
Length of query: 308
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,306,398
Effective search space: 2947117988
Effective search space used: 2947117988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004407
(926 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032730.1| beta-galactosidase precursor [Canis lupus fa... 445 e-125
Alignment gi|XP_851411.1| PREDICTED: similar to galactosidase, beta 1-lik... 312 2e-85
Alignment gi|XP_546385.2| PREDICTED: similar to T19B10.3 [Canis familiari... 206 3e-53
Alignment gi|XP_855681.1| PREDICTED: similar to CG3132-PA isoform 2 [Cani... 196 3e-50
Alignment gi|XP_848226.1| PREDICTED: similar to CG3132-PA isoform 1 [Cani... 195 4e-50
Alignment gi|XP_855708.1| PREDICTED: similar to CG3132-PA isoform 3 [Cani... 194 1e-49
Alignment gi|XP_849131.1| PREDICTED: similar to beta-galactosidase-like p... 171 9e-43
>ref|NP_001032730.1| beta-galactosidase precursor [Canis lupus familiaris].
Length = 668
Score = 445 bits (1145), Expect = e-125
Identities = 206/253 (81%), Positives = 228/253 (90%)
Frame = +1
Query: 166 KNAPLRTFKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYV 345
+NA RTF IDY+ N FLKDGQPFRYISGSIHY R+PRFYWKDRLLKMKMAGLNAI+TYV
Sbjct: 26 RNASQRTFTIDYSHNRFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYV 85
Query: 346 AWNFHEPWPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKES 525
WNFHEP PG+YQF+G+ DVEYFI+LAH+LGLLVILRPGPYICAEWDMGGLPAWLL KES
Sbjct: 86 PWNFHEPQPGQYQFSGEQDVEYFIKLAHELGLLVILRPGPYICAEWDMGGLPAWLLLKES 145
Query: 526 IVLRSSHPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQ 705
I+LRSS PDYLAAVDKWLGVLLPKMKPLLYQNGGPIIT+QVENEYGSY++CDY+YLRFLQ
Sbjct: 146 IILRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITMQVENEYGSYFTCDYDYLRFLQ 205
Query: 706 KRFHYYLGEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPF 885
K FH++LG DV+LFTTDGA+EKFL CG L+GLYATVDFG ANITAAF +QRK EP+ P
Sbjct: 206 KLFHHHLGNDVLLFTTDGANEKFLQCGALQGLYATVDFGPGANITAAFQIQRKSEPKGPL 265
Query: 886 DHSEIYTGWXRHW 924
+SE YTGW HW
Sbjct: 266 VNSEFYTGWLDHW 278
>ref|XP_851411.1| PREDICTED: similar to galactosidase, beta 1-like isoform 2 [Canis
familiaris].
Length = 651
Score = 312 bits (800), Expect = 2e-85
Identities = 146/248 (58%), Positives = 180/248 (72%)
Frame = +1
Query: 181 RTFKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFH 360
R+F +D + FL DG PFRY+SGS+HYFR+PR W DRL KM+M+GLN ++ YV WN+H
Sbjct: 27 RSFIVDRINDRFLLDGAPFRYVSGSLHYFRVPRVLWADRLFKMRMSGLNTVQFYVPWNYH 86
Query: 361 EPWPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRS 540
EP PG Y F G D+ F++ A LLVILRPGPYICAEWDMGGLPAWLL+K I LR+
Sbjct: 87 EPEPGVYNFNGSRDLFAFLKEASLANLLVILRPGPYICAEWDMGGLPAWLLQKPEINLRT 146
Query: 541 SHPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHY 720
S PD+LAAVD W VLLPK+ P LY NGG II++QVENEYGSY +CD NY++ L F
Sbjct: 147 SDPDFLAAVDSWFKVLLPKLYPWLYHNGGNIISIQVENEYGSYRACDVNYMKHLAGLFRA 206
Query: 721 YLGEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEI 900
LG+ ++LFTTDG + L CG+L+GLY TVDFG N+T F++ R YEP P +SE
Sbjct: 207 LLGDRILLFTTDG--PEGLRCGSLQGLYTTVDFGPADNMTKIFALLRNYEPHGPLVNSEY 264
Query: 901 YTGWXRHW 924
YTGW +W
Sbjct: 265 YTGWLDYW 272
>ref|XP_546385.2| PREDICTED: similar to T19B10.3 [Canis familiaris].
Length = 908
Score = 206 bits (523), Expect = 3e-53
Identities = 106/238 (44%), Positives = 150/238 (63%)
Frame = +1
Query: 211 CFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFT 390
CF G F+ GSIHYFR+PR YW DRL K+K G N + TYV WN HEP GK+ F+
Sbjct: 334 CFTLGGHKFQVFGGSIHYFRVPRAYWGDRLRKLKACGFNTVTTYVPWNLHEPERGKFDFS 393
Query: 391 GDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVD 570
G+ D+E F+ LA ++GL VILRPGPYIC+E D+GGLP+WLL+ +VLR+++ ++ AVD
Sbjct: 394 GNLDMEAFVLLAAEMGLWVILRPGPYICSEIDLGGLPSWLLQDPKMVLRTTYSGFVKAVD 453
Query: 571 KWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFT 750
K+ L+ ++ PL Y+ GGPII VQVENEYGS+ D Y+ +LQK G +L T
Sbjct: 454 KYFDHLISRVVPLQYRRGGPIIAVQVENEYGSFAE-DRGYMPYLQKAL-LERGIVELLVT 511
Query: 751 TDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
+D A L G ++G+ AT++ +++ + F + + +P E + GW W
Sbjct: 512 SDDAEN--LLKGHIKGVLATIN--MNSFQESDFKLLSYVQSNKPIMVMEFWVGWFDTW 565
>ref|XP_855681.1| PREDICTED: similar to CG3132-PA isoform 2 [Canis familiaris].
Length = 638
Score = 196 bits (498), Expect = 3e-50
Identities = 103/239 (43%), Positives = 150/239 (62%), Gaps = 2/239 (0%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F + F + GS+HYFR+PR YW+DRLLK+K GLN + TYV WN HEP GK+ F+G
Sbjct: 54 FTLEDSTFWILGGSMHYFRVPREYWRDRLLKLKACGLNTLTTYVPWNLHEPERGKFDFSG 113
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E F+ LA ++GL VILRPGPYIC+E D+GGLP+WLL+ + LR+++ + AVD
Sbjct: 114 NLDMEAFVLLAAEMGLWVILRPGPYICSEIDLGGLPSWLLQDSGMRLRTTYKGFTEAVDL 173
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+ ++ PL Y++GGPII VQVENEYGS Y+ D Y+ +++K G +L T+
Sbjct: 174 YFDHLMARVVPLQYKHGGPIIAVQVENEYGS-YNKDPAYMPYIKKALE-DRGIVELLLTS 231
Query: 754 DGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPR--RPFDHSEIYTGWXRHW 924
D ++ L G L+G AT++ + + + + R +P E +TGW W
Sbjct: 232 D--NKDGLQKGVLDGALATINLQSQHELQLLTNFLKDHHQRDEKPRMVMEYWTGWFDSW 288
>ref|XP_848226.1| PREDICTED: similar to CG3132-PA isoform 1 [Canis familiaris].
Length = 636
Score = 195 bits (496), Expect = 4e-50
Identities = 102/237 (43%), Positives = 148/237 (62%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F + F + GS+HYFR+PR YW+DRLLK+K GLN + TYV WN HEP GK+ F+G
Sbjct: 54 FTLEDSTFWILGGSMHYFRVPREYWRDRLLKLKACGLNTLTTYVPWNLHEPERGKFDFSG 113
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E F+ LA ++GL VILRPGPYIC+E D+GGLP+WLL+ + LR+++ + AVD
Sbjct: 114 NLDMEAFVLLAAEMGLWVILRPGPYICSEIDLGGLPSWLLQDSGMRLRTTYKGFTEAVDL 173
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+ ++ PL Y++GGPII VQVENEYGS Y+ D Y+ +++K G +L T+
Sbjct: 174 YFDHLMARVVPLQYKHGGPIIAVQVENEYGS-YNKDPAYMPYIKKALE-DRGIVELLLTS 231
Query: 754 DGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
D ++ L G L+G AT++ + + + +P E +TGW W
Sbjct: 232 D--NKDGLQKGVLDGALATINLQSQHELQLLTNFLVSVQRVQPRMVMEYWTGWFDSW 286
>ref|XP_855708.1| PREDICTED: similar to CG3132-PA isoform 3 [Canis familiaris].
Length = 631
Score = 194 bits (493), Expect = 1e-49
Identities = 104/237 (43%), Positives = 150/237 (63%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F + F + GS+HYFR+PR YW+DRLLK+K GLN + TYV WN HEP GK+ F+G
Sbjct: 54 FTLEDSTFWILGGSMHYFRVPREYWRDRLLKLKACGLNTLTTYVPWNLHEPERGKFDFSG 113
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E F+ LA ++GL VILRPGPYIC+E D+GGLP+WLL+ + LR+++ + AVD
Sbjct: 114 NLDMEAFVLLAAEMGLWVILRPGPYICSEIDLGGLPSWLLQDSGMRLRTTYKGFTEAVDL 173
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+ ++ PL Y++GGPII VQVENEYGS Y+ D Y+ +++K G +L T+
Sbjct: 174 YFDHLMARVVPLQYKHGGPIIAVQVENEYGS-YNKDPAYMPYIKKALE-DRGIVELLLTS 231
Query: 754 DGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
D ++ L G L+G AT++ + + A + +PR E +TGW W
Sbjct: 232 D--NKDGLQKGVLDGALATIN--LQSVTPQARGHLHRVQPRMVM---EYWTGWFDSW 281
>ref|XP_849131.1| PREDICTED: similar to beta-galactosidase-like protein [Canis
familiaris].
Length = 938
Score = 171 bits (433), Expect = 9e-43
Identities = 83/181 (45%), Positives = 116/181 (64%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F DG PF I+G+IHYFR+PR YW+DRL K+K G N + T++ WN HEP G + FT
Sbjct: 354 FTLDGSPFLIIAGTIHYFRVPREYWRDRLQKLKACGFNTVTTHIPWNLHEPRKGWFYFTA 413
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D F+ +A + GL VIL PGPY+ + D+GGLP+WLL + LR+++ + AV+
Sbjct: 414 NLDFVTFVAMASEAGLWVILCPGPYVGGDLDLGGLPSWLLRDPKMKLRTTYKGFTKAVNH 473
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ ++P + L Y GGPII VQVENEYGSY+ D YL++++K G V+L T
Sbjct: 474 YFDKIIPMIVQLQYAKGGPIIAVQVENEYGSYHQ-DKRYLKYIKKAL-VTRGIKVLLMTG 531
Query: 754 D 756
D
Sbjct: 532 D 532
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,746,685
Number of extensions: 1250662
Number of successful extensions: 6982
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6882
Number of HSP's successfully gapped: 7
Length of query: 308
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 206
Effective length of database: 15,474,232
Effective search space: 3187691792
Effective search space used: 3187691792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004407
(926 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000395.2| beta-galactosidase isoform a preproprotein [Hom... 446 e-125
Alignment gi|NP_001073279.1| beta-galactosidase isoform b [Homo sapiens]. 441 e-124
Alignment gi|NP_078782.3| beta-galactosidase-1-like protein precursor [Ho... 315 5e-86
Alignment gi|NP_001073876.2| beta-galactosidase-1-like protein 3 [Homo sa... 200 2e-51
Alignment gi|NP_612351.2| beta-galactosidase-1-like protein 2 precursor [... 197 1e-50
Alignment gi|NP_001129074.1| beta-galactosidase isoform c preproprotein [... 103 3e-22
>ref|NP_000395.2| beta-galactosidase isoform a preproprotein [Homo sapiens].
Length = 677
Score = 446 bits (1147), Expect = e-125
Identities = 203/253 (80%), Positives = 228/253 (90%)
Frame = +1
Query: 166 KNAPLRTFKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYV 345
+NA R F+IDY+R+ FLKDGQPFRYISGSIHY R+PRFYWKDRLLKMKMAGLNAI+TYV
Sbjct: 25 RNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYV 84
Query: 346 AWNFHEPWPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKES 525
WNFHEPWPG+YQF+ DHDVEYF+RLAH+LGLLVILRPGPYICAEW+MGGLPAWLLEKES
Sbjct: 85 PWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKES 144
Query: 526 IVLRSSHPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQ 705
I+LRSS PDYLAAVDKWLGVLLPKMKPLLYQNGGP+ITVQVENEYGSY++CD++YLRFLQ
Sbjct: 145 ILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQ 204
Query: 706 KRFHYYLGEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPF 885
KRF ++LG+DVVLFTTDGAH+ FL CG L+GLY TVDFG +NIT AF QRK EP+ P
Sbjct: 205 KRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPL 264
Query: 886 DHSEIYTGWXRHW 924
+SE YTGW HW
Sbjct: 265 INSEFYTGWLDHW 277
>ref|NP_001073279.1| beta-galactosidase isoform b [Homo sapiens].
Length = 647
Score = 441 bits (1134), Expect = e-124
Identities = 200/246 (81%), Positives = 224/246 (91%)
Frame = +1
Query: 187 FKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEP 366
F+IDY+R+ FLKDGQPFRYISGSIHY R+PRFYWKDRLLKMKMAGLNAI+TYV WNFHEP
Sbjct: 2 FEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEP 61
Query: 367 WPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSH 546
WPG+YQF+ DHDVEYF+RLAH+LGLLVILRPGPYICAEW+MGGLPAWLLEKESI+LRSS
Sbjct: 62 WPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSD 121
Query: 547 PDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYL 726
PDYLAAVDKWLGVLLPKMKPLLYQNGGP+ITVQVENEYGSY++CD++YLRFLQKRF ++L
Sbjct: 122 PDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHL 181
Query: 727 GEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYT 906
G+DVVLFTTDGAH+ FL CG L+GLY TVDFG +NIT AF QRK EP+ P +SE YT
Sbjct: 182 GDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYT 241
Query: 907 GWXRHW 924
GW HW
Sbjct: 242 GWLDHW 247
>ref|NP_078782.3| beta-galactosidase-1-like protein precursor [Homo sapiens].
Length = 654
Score = 315 bits (806), Expect = 5e-86
Identities = 149/251 (59%), Positives = 181/251 (72%)
Frame = +1
Query: 172 APLRTFKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAW 351
A R+F +D + FL DG PFRY+SGS+HYFR+PR W DRLLKM+ +GLNAI+ YV W
Sbjct: 25 ADTRSFVVDRGHDRFLLDGAPFRYVSGSLHYFRVPRVLWADRLLKMRWSGLNAIQFYVPW 84
Query: 352 NFHEPWPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIV 531
N+HEP PG Y F G D+ F+ A LLVILRPGPYICAEW+MGGLP+WLL K I
Sbjct: 85 NYHEPQPGVYNFNGSRDLIAFLNEAALANLLVILRPGPYICAEWEMGGLPSWLLRKPEIH 144
Query: 532 LRSSHPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKR 711
LR+S PD+LAAVD W VLLPK+ P LY NGG II++QVENEYGSY +CD++Y+R L
Sbjct: 145 LRTSDPDFLAAVDSWFKVLLPKIYPWLYHNGGNIISIQVENEYGSYRACDFSYMRHLAGL 204
Query: 712 FHYYLGEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDH 891
F LGE ++LFTTDG + L CG+L GLY TVDFG N+T F++ RKYEP P +
Sbjct: 205 FRALLGEKILLFTTDG--PEGLKCGSLRGLYTTVDFGPADNMTKIFTLLRKYEPHGPLVN 262
Query: 892 SEIYTGWXRHW 924
SE YTGW +W
Sbjct: 263 SEYYTGWLDYW 273
>ref|NP_001073876.2| beta-galactosidase-1-like protein 3 [Homo sapiens].
Length = 653
Score = 200 bits (508), Expect = 2e-51
Identities = 102/237 (43%), Positives = 148/237 (62%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F +G F GSIHYFR+PR YW+DRLLK+K G N + TYV WN HEP GK+ F+G
Sbjct: 80 FTLEGHKFLIFGGSIHYFRVPREYWRDRLLKLKACGFNTVTTYVPWNLHEPERGKFDFSG 139
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E F+ +A ++GL VILRPG YIC+E D+GGLP+WLL+ ++LR+++ ++ AV+K
Sbjct: 140 NLDLEAFVLMAAEIGLWVILRPGRYICSEMDLGGLPSWLLQDPRLLLRTTNKSFIEAVEK 199
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+P++ PL Y+ GP+I VQVENEYGS ++ D Y+ +L K G +L T+
Sbjct: 200 YFDHLIPRVIPLQYRQAGPVIAVQVENEYGS-FNKDKTYMPYLHKAL-LRRGIVELLLTS 257
Query: 754 DGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
DG EK + G +G+ A ++ T F+ K + +P E + GW W
Sbjct: 258 DG--EKHVLSGHTKGVLAAINLQKLHQDT--FNQLHKVQRDKPLLIMEYWVGWFDRW 310
>ref|NP_612351.2| beta-galactosidase-1-like protein 2 precursor [Homo sapiens].
Length = 636
Score = 197 bits (501), Expect = 1e-50
Identities = 102/237 (43%), Positives = 149/237 (62%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F+ + F GSIHYFR+PR YW+DRLLKMK GLN + TYV WN HEP GK+ F+G
Sbjct: 54 FMLEDSTFWIFGGSIHYFRVPREYWRDRLLKMKACGLNTLTTYVPWNLHEPERGKFDFSG 113
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E F+ +A ++GL VILRPGPYIC+E D+GGLP+WLL+ + LR+++ + AVD
Sbjct: 114 NLDLEAFVLMAAEIGLWVILRPGPYICSEMDLGGLPSWLLQDPGMRLRTTYKGFTEAVDL 173
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+ ++ PL Y+ GGPII VQVENEYGS Y+ D Y+ +++K G +L T+
Sbjct: 174 YFDHLMSRVVPLQYKRGGPIIAVQVENEYGS-YNKDPAYMPYVKKALE-DRGIVELLLTS 231
Query: 754 DGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
D ++ L+ G ++G+ AT++ + + + +P E +TGW W
Sbjct: 232 D--NKDGLSKGIVQGVLATINLQSTHELQLLTTFLFNVQGTQPKMVMEYWTGWFDSW 286
>ref|NP_001129074.1| beta-galactosidase isoform c preproprotein [Homo sapiens].
Length = 546
Score = 103 bits (256), Expect = 3e-22
Identities = 47/58 (81%), Positives = 53/58 (91%)
Frame = +1
Query: 166 KNAPLRTFKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIET 339
+NA R F+IDY+R+ FLKDGQPFRYISGSIHY R+PRFYWKDRLLKMKMAGLNAI+T
Sbjct: 25 RNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQT 82
Score = 56.2 bits (134), Expect = 4e-08
Identities = 27/32 (84%), Positives = 27/32 (84%)
Frame = +3
Query: 552 LPCSCG*VVGCPSAQDEASPLSEWRADYYSAG 647
LP SCG VVG PSAQDEASPLSEWRA Y SAG
Sbjct: 83 LPGSCGQVVGSPSAQDEASPLSEWRASYNSAG 114
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,865,096
Number of extensions: 1214159
Number of successful extensions: 6382
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6307
Number of HSP's successfully gapped: 7
Length of query: 308
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,934,836
Effective search space: 3076576216
Effective search space used: 3076576216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004407
(926 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033882.1| beta-galactosidase precursor [Mus musculus]. 432 e-121
Alignment gi|NP_083286.1| beta-galactosidase-1-like protein precursor [Mu... 310 1e-84
Alignment gi|NP_722498.1| beta-galactosidase-1-like protein 2 [Mus muscul... 202 4e-52
Alignment gi|NP_001106794.1| beta-galactosidase-1-like protein 3 [Mus mus... 199 3e-51
Alignment gi|NP_001170980.1| beta-galactosidase-like protein [Mus musculu... 166 3e-41
>ref|NP_033882.1| beta-galactosidase precursor [Mus musculus].
Length = 647
Score = 432 bits (1112), Expect = e-121
Identities = 199/252 (78%), Positives = 222/252 (88%)
Frame = +1
Query: 169 NAPLRTFKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVA 348
N RTFK+DY+R+ FLKDGQPFRYISGSIHYFR+PRFYW+DRLLKMKMAGLNAI+ YV
Sbjct: 27 NVTQRTFKLDYSRDRFLKDGQPFRYISGSIHYFRIPRFYWEDRLLKMKMAGLNAIQMYVP 86
Query: 349 WNFHEPWPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESI 528
WNFHEP PG+Y+F+GD DVE+FI+LAH+LGLLVILRPGPYICAEWDMGGLPAWLLEK+SI
Sbjct: 87 WNFHEPQPGQYEFSGDRDVEHFIQLAHELGLLVILRPGPYICAEWDMGGLPAWLLEKQSI 146
Query: 529 VLRSSHPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQK 708
VLRSS PDYL AVDKWL VLLPKMKPLLYQNGGPIITVQVENEYGSY++CDY+YLRFL
Sbjct: 147 VLRSSDPDYLVAVDKWLAVLLPKMKPLLYQNGGPIITVQVENEYGSYFACDYDYLRFLVH 206
Query: 709 RFHYYLGEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFD 888
RF Y+LG DV+LFTTDGA EK L CGTL+ LYATVDFG NIT AF +QRK+EP+ P
Sbjct: 207 RFRYHLGNDVILFTTDGASEKMLKCGTLQDLYATVDFGTGNNITQAFLVQRKFEPKGPLI 266
Query: 889 HSEIYTGWXRHW 924
+SE YTGW HW
Sbjct: 267 NSEFYTGWLDHW 278
>ref|NP_083286.1| beta-galactosidase-1-like protein precursor [Mus musculus].
Length = 646
Score = 310 bits (793), Expect = 1e-84
Identities = 143/251 (56%), Positives = 181/251 (72%)
Frame = +1
Query: 172 APLRTFKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAW 351
A R+F +D + FL DG PFRY+SGS+HYFR+P W DRLLKM+++GLNA++ YV W
Sbjct: 21 AEARSFVVDREHDRFLLDGVPFRYVSGSLHYFRVPPVLWADRLLKMQLSGLNAVQFYVPW 80
Query: 352 NFHEPWPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIV 531
N+HEP PG Y F G D+ F+ A ++ LLVILRPGPYICAEW+MGGLP+WLL +I
Sbjct: 81 NYHEPEPGIYNFNGSRDLIAFLNEAAKVNLLVILRPGPYICAEWEMGGLPSWLLRNPNIH 140
Query: 532 LRSSHPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKR 711
LR+S P +L AVD W VLLPK+ P LY NGG II++QVENEYGSY +CD+ Y+R L
Sbjct: 141 LRTSDPAFLEAVDSWFKVLLPKIYPFLYHNGGNIISIQVENEYGSYKACDFKYMRHLAGL 200
Query: 712 FHYYLGEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDH 891
F LG+ ++LFTTDG H L CG+L+GLY T+DFG N+T FS+ R+YEP P +
Sbjct: 201 FRALLGDKILLFTTDGPHG--LRCGSLQGLYTTIDFGPADNVTRIFSLLREYEPHGPLVN 258
Query: 892 SEIYTGWXRHW 924
SE YTGW +W
Sbjct: 259 SEYYTGWLDYW 269
>ref|NP_722498.1| beta-galactosidase-1-like protein 2 [Mus musculus].
Length = 652
Score = 202 bits (513), Expect = 4e-52
Identities = 104/237 (43%), Positives = 154/237 (64%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F+ + F+ + GSIHYFR+PR YW+DRLLK+K GLN + TYV WN HEP GK+ F+G
Sbjct: 70 FILEDSIFQILGGSIHYFRVPREYWRDRLLKLKACGLNTLTTYVPWNLHEPERGKFDFSG 129
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E FI+LA ++GL VILRPGPYIC+E D+GGLP+WLL+ + LR+++ + AVD
Sbjct: 130 NLDLEAFIQLAAKIGLWVILRPGPYICSEIDLGGLPSWLLQDPDMKLRTTYHGFTKAVDL 189
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+ ++ PL Y++GGPII VQVENEYGS Y+ D Y+ +++K G +L T+
Sbjct: 190 YFDHLMSRVVPLQYKHGGPIIAVQVENEYGS-YNKDRAYMPYIKKALE-DRGIIEMLLTS 247
Query: 754 DGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
D ++ L G ++G+ AT++ + A ++ + +P E +TGW W
Sbjct: 248 D--NKDGLEKGVVDGVLATINLQSQQELMALNTVLLSIQGIQPKMVMEYWTGWFDSW 302
>ref|NP_001106794.1| beta-galactosidase-1-like protein 3 [Mus musculus].
Length = 662
Score = 199 bits (505), Expect = 3e-51
Identities = 100/237 (42%), Positives = 144/237 (60%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F +G F + GSIHYFR+PR YWKDRLLK++ G N + TY+ WN HE GK+ F+
Sbjct: 69 FTLEGHKFMIVGGSIHYFRVPREYWKDRLLKLQACGFNTVTTYIPWNLHEQERGKFDFSE 128
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
D+E ++ LA +GL VILRPGPYICAE D+GGLP+WLL LR+++ ++ AVDK
Sbjct: 129 ILDLEAYVLLAKTIGLWVILRPGPYICAEVDLGGLPSWLLRNPVTDLRTTNKGFIEAVDK 188
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+PK+ PL Y++GGP+I VQVENEYGS+ D NY+ +L+K L +V
Sbjct: 189 YFDHLIPKILPLQYRHGGPVIAVQVENEYGSFQK-DRNYMNYLKKAL---LKRGIVELLL 244
Query: 754 DGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
+ + G++ G T++ +++ +F K + +P E +TGW W
Sbjct: 245 TSDDKDGIQIGSVNGALTTIN--MNSFTKDSFIKLHKMQSDKPIMIMEYWTGWYDSW 299
>ref|NP_001170980.1| beta-galactosidase-like protein [Mus musculus].
Length = 638
Score = 166 bits (419), Expect = 3e-41
Identities = 90/200 (45%), Positives = 125/200 (62%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F +G PFR ISG+I YFR+PR W+ L KM+ G N + T++ WN HEP G++ FT
Sbjct: 56 FTLEGFPFRIISGTIDYFRIPRNSWRLSLRKMQAGGFNTLTTHIPWNLHEPAVGQFYFTE 115
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+ FI +A Q GL VIL PGPYI ++ D+GGLP+WLL+ + LR+++ + A+++
Sbjct: 116 NTDLIAFITMASQSGLWVILCPGPYIGSDLDLGGLPSWLLKDPKMKLRTTYKGFTKAMNR 175
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+PK+ Y+ GGPII VQVENEYGSYY D Y+ ++ K G D +L T
Sbjct: 176 YFDNLIPKIAKFQYKKGGPIIAVQVENEYGSYY-MDKKYMAYV-KTALVSRGIDELLMTA 233
Query: 754 DGAHEKFLACGTLEGLYATV 813
D L G LE + ATV
Sbjct: 234 DDGVS--LRKGHLENVLATV 251
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,452,115
Number of extensions: 998974
Number of successful extensions: 4995
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4942
Number of HSP's successfully gapped: 5
Length of query: 308
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 207
Effective length of database: 12,583,923
Effective search space: 2604872061
Effective search space used: 2604872061
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004407
(926 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928410.1| PREDICTED: beta-galactosidase-1-like protein... 317 8e-87
Alignment gi|XP_003130137.1| PREDICTED: beta-galactosidase-1-like protein... 209 2e-54
Alignment gi|XP_003130139.2| PREDICTED: beta-galactosidase-1-like protein... 144 9e-35
>ref|XP_001928410.1| PREDICTED: beta-galactosidase-1-like protein [Sus scrofa].
Length = 652
Score = 317 bits (811), Expect = 8e-87
Identities = 150/251 (59%), Positives = 182/251 (72%)
Frame = +1
Query: 172 APLRTFKIDYNRNCFLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAW 351
A R+F +D N + FL DG PFRY+SGS+HYFR+PR W DRL KM+M+GLNAI+ YV W
Sbjct: 25 ADTRSFVVDRNHDRFLLDGVPFRYVSGSLHYFRVPRVLWADRLFKMRMSGLNAIQFYVPW 84
Query: 352 NFHEPWPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIV 531
N+HEP PG Y F G D+ F++ A LLVILRPGPYICAEW+MGGLPAWLL K I
Sbjct: 85 NYHEPEPGVYNFNGSRDLFAFLKEATLANLLVILRPGPYICAEWEMGGLPAWLLRKPKIH 144
Query: 532 LRSSHPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKR 711
LR+S PD+LAAVD W VLLPK+ P LY NGG II++QVENEYGSY +CD Y+R L
Sbjct: 145 LRTSDPDFLAAVDSWFKVLLPKIYPWLYHNGGNIISIQVENEYGSYRACDVKYMRHLAGL 204
Query: 712 FHYYLGEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDH 891
F LG+ ++LFTTDG + L CG+L+GLY TVDFG N+T F++ RKYEP P +
Sbjct: 205 FRALLGDKILLFTTDG--PEGLKCGSLQGLYTTVDFGPADNMTKIFALLRKYEPHGPLVN 262
Query: 892 SEIYTGWXRHW 924
SE YTGW +W
Sbjct: 263 SEYYTGWLDYW 273
>ref|XP_003130137.1| PREDICTED: beta-galactosidase-1-like protein 2 [Sus scrofa].
Length = 635
Score = 209 bits (532), Expect = 2e-54
Identities = 108/237 (45%), Positives = 153/237 (64%)
Frame = +1
Query: 214 FLKDGQPFRYISGSIHYFRMPRFYWKDRLLKMKMAGLNAIETYVAWNFHEPWPGKYQFTG 393
F+ + F GS+HYFR+PR YW+DRLLKMK GLN + TYV WN HEP GK+ F+G
Sbjct: 53 FMLEDSAFWIFGGSVHYFRVPRAYWRDRLLKMKACGLNTLTTYVPWNLHEPERGKFDFSG 112
Query: 394 DHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEKESIVLRSSHPDYLAAVDK 573
+ D+E FI LA ++GL VILRPGPYIC+E D+GGLP+WLL+ S+ LR+++ + AVD
Sbjct: 113 NLDMEAFILLAAEVGLWVILRPGPYICSEIDLGGLPSWLLQDSSMKLRTTYEGFTKAVDL 172
Query: 574 WLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRFLQKRFHYYLGEDVVLFTT 753
+ L+ ++ PL Y+NGGPII VQVENEYGS Y+ D Y+ +++K G +L T+
Sbjct: 173 YFDHLMARVVPLQYKNGGPIIAVQVENEYGS-YNKDPAYMPYIKKALE-DRGIVELLLTS 230
Query: 754 DGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRRPFDHSEIYTGWXRHW 924
D +E L+ GT++G+ AT++ + + + + RP E +TGW W
Sbjct: 231 D--NEDGLSKGTVDGVLATINLQSQNELRLLHNFLQSVQGVRPKMVMEYWTGWFDSW 285
>ref|XP_003130139.2| PREDICTED: beta-galactosidase-1-like protein 3, partial [Sus
scrofa].
Length = 533
Score = 144 bits (362), Expect = 9e-35
Identities = 81/195 (41%), Positives = 121/195 (62%)
Frame = +1
Query: 340 YVAWNFHEPWPGKYQFTGDHDVEYFIRLAHQLGLLVILRPGPYICAEWDMGGLPAWLLEK 519
YV WN HEP GK+ F+G+ D+E FI LA ++GL VILRPGPYIC+E D+GGLP+ LL+
Sbjct: 1 YVPWNLHEPERGKFDFSGNLDMEAFILLAAEVGLWVILRPGPYICSEIDLGGLPSRLLQD 60
Query: 520 ESIVLRSSHPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYYSCDYNYLRF 699
+ LR+++ ++ AVD++L L+ ++ PL Y+ GGPII VQVENEYGS++ D Y+ +
Sbjct: 61 PTSQLRTTNHSFIEAVDEYLDHLIARVVPLQYRKGGPIIAVQVENEYGSFHK-DEAYMPY 119
Query: 700 LQKRFHYYLGEDVVLFTTDGAHEKFLACGTLEGLYATVDFGVDANITAAFSMQRKYEPRR 879
L K G +L T+D +E + G ++G+ ATV+ + + F + + +
Sbjct: 120 LHKAL-LKRGIVELLLTSDNTNE--VLKGHIKGVLATVN--MKSFKEGEFKDLYQVQSNK 174
Query: 880 PFDHSEIYTGWXRHW 924
P E + GW W
Sbjct: 175 PILIMEFWVGWFDTW 189
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,184,114
Number of extensions: 777236
Number of successful extensions: 4322
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4272
Number of HSP's successfully gapped: 3
Length of query: 308
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 209
Effective length of database: 8,879,129
Effective search space: 1855737961
Effective search space used: 1855737961
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004407
(926 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894277.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 353 1e-94
gb|GL893679.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 293 9e-77
>gb|GL894277.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2959
Length = 16198
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 649 gaaaatgaatatggcagctactatagctgtgattacaactacctgcgtttcctgcagaag 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9255 gaaaatgaatatggcagctactatagctgtgattacaactacctgcgtttcctgcagaag 9196
Query: 709 cgtttccactactacttgggtgaggacgtggtcctgttcaccactgacggggcgcatgag 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9195 cgtttccactactacttgggtgaggacgtggtcctgttcaccactgacggggcgcatgag 9136
Query: 769 aagttcctggcgtgtgggacgctggagggcctctatgccacagtggacttcggagtag 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9135 aagttcctggcgtgtgggacgctggagggcctctatgccacagtggacttcggagtag 9078
Score = 335 bits (169), Expect = 3e-89
Identities = 172/173 (99%)
Strand = Plus / Minus
Query: 169 aatgcccccctgaggactttcaagatcgactacaaccgtaactgcttcctcaaggatggc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14581 aatgcccccctgaggactttcaagatcgactacaaccgtaactgcttcctcaaggatggc 14522
Query: 229 cagccgttccgctacatctcaggaagtattcactatttccgcatgccccgcttctactgg 288
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14521 caaccgttccgctacatctcaggaagtattcactatttccgcatgccccgcttctactgg 14462
Query: 289 aaggaccggctgctgaagatgaagatggccgggctgaatgccattgagacgta 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14461 aaggaccggctgctgaagatgaagatggccgggctgaatgccattgagacgta 14409
Score = 194 bits (98), Expect = 6e-47
Identities = 101/102 (99%)
Strand = Plus / Minus
Query: 546 tccagactaccttgcagctgtggataagtggttgggtgtccttctgcccaagatgaagcc 605
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11500 tccagactaccttgcagctgtggacaagtggttgggtgtccttctgcccaagatgaagcc 11441
Query: 606 tctcctctatcagaatggagggccgattattacagtgcaggt 647
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11440 tctcctctatcagaatggagggccgattattacagtgcaggt 11399
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 489 gggaggattacctgcttggctactggagaaggaatctatcgttctccgttcttcccatcc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12720 gggaggattacctgcttggctactggagaaggaatctatcgttctccgttcttcccatcc 12661
Query: 549 ag 550
||
Sbjct: 12660 ag 12659
Score = 87.7 bits (44), Expect = 1e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 825 agatgccaacatcacagctgctttttctatgcagaggaagtatgaacccagaagaccctt 884
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 5281 agatgccaacatcacagctgcttttctaatgcagaggaagtatgaacccagaggaccctt 5222
>gb|GL893679.1| Sus scrofa unplaced genomic scaffold chrU_scaffold242
Length = 310
Score = 293 bits (148), Expect = 9e-77
Identities = 151/152 (99%)
Strand = Plus / Minus
Query: 339 gtacgtggcctggaacttccacgagccctggccaggaaagtaccaattcacgggggacca 398
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 191 gtacgtggcctggaacttccacgagccctggccaggaaagtaccaattcactggggacca 132
Query: 399 tgatgtggagtattttattagactggcccatcagctgggactgctggtgatcctgaggcc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tgatgtggagtattttattagactggcccatcagctgggactgctggtgatcctgaggcc 72
Query: 459 tggaccctacatctgtgcggagtgggacatgg 490
||||||||||||||||||||||||||||||||
Sbjct: 71 tggaccctacatctgtgcggagtgggacatgg 40
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,557,341
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 6
Length of query: 926
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 905
Effective length of database: 2,808,413,156
Effective search space: 2541613906180
Effective search space used: 2541613906180
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)