Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004450
(1489 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030485.1| ADP-ribosylation factor-binding protein GGA1... 322 7e-88
Alignment gi|NP_001076873.1| ADP-ribosylation factor-binding protein GGA3... 317 2e-86
Alignment gi|NP_001092624.1| target of myb1-like 2 [Bos taurus]. 91 3e-18
Alignment gi|NP_001069079.1| TOM1-like protein 1 [Bos taurus]. 73 6e-13
Alignment gi|NP_001030187.1| target of Myb protein 1 [Bos taurus]. 71 2e-12
Alignment gi|XP_002704416.1| PREDICTED: target of myb1 [Bos taurus]. 71 2e-12
Alignment gi|NP_001039554.1| hepatocyte growth factor-regulated tyrosine ... 66 9e-11
Alignment gi|NP_001069574.1| signal transducing adapter molecule 2 [Bos t... 64 3e-10
Alignment gi|NP_001070310.1| signal transducing adapter molecule 1 [Bos t... 62 1e-09
>ref|NP_001030485.1| ADP-ribosylation factor-binding protein GGA1 [Bos taurus].
Length = 435
Score = 322 bits (824), Expect = 7e-88
Identities = 200/445 (44%), Positives = 254/445 (57%), Gaps = 9/445 (2%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE +N+AT+P E +W++I FC+Q+N D GP LLAHKIQSPQE EA+ ALTV
Sbjct: 10 LEARINRATNPLNKELNWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAVQALTV 69
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ CG++FH EV KFRFLNELIKV+SPKYLGS T+EKVK +I+E+LYSWTV PE+
Sbjct: 70 LETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 129
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 691
+KI +AYQMLKKQGI+K DPKLP D P P P PK+ IF+ DEEKSK+L RLLKS+HPE
Sbjct: 130 VKIAEAYQMLKKQGIVKADPKLPDDATFPVPPPRPKNVIFE-DEEKSKMLARLLKSSHPE 188
Query: 692 DLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEAL 871
DL+AAN+LIK + +VK+L EM+ + + G A E L
Sbjct: 189 DLRAANKLIKEMVQEDQKRMEKISKRASAIEEVNNNVKLLTEMVMNHSQGGAAARSSEDL 248
Query: 872 -QVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
+ +Y+RCE++RPTLFRLAS ALAEILQAND LTQ + LYKQ+V G G
Sbjct: 249 MKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGEAT 308
Query: 1049 VSSVEDTPVSRGCTKNCPLIDLEGDSGSAQA---GVATPSLLHQDLAALGISDAPVTNKA 1219
+S+ + L+DL QA + P+L + + S AP
Sbjct: 309 AASIPGS--------TSALLDLSAWISLRQAPPTQLCPPALATRPARS---SPAPQCPCL 357
Query: 1220 AGQHCCQEEKTP---IASTPLGGAVRSPSAERNLLDLLSPQP--PPGPLNYIPQKSIPKE 1384
C TP +A LGG S R PQP P + PQ+ P+
Sbjct: 358 MMSSCLWASATPHPSLAWMVLGGTASSRPIAR------KPQPRLRPPVWTFGPQRRHPRP 411
Query: 1385 VPPGTKSSPGWSWEAGPLASSHRPR 1459
+S W P SSH P+
Sbjct: 412 RAVAWMTSTSW---GRPSCSSHCPK 433
>ref|NP_001076873.1| ADP-ribosylation factor-binding protein GGA3 [Bos taurus].
Length = 582
Score = 317 bits (812), Expect = 2e-86
Identities = 182/403 (45%), Positives = 239/403 (59%), Gaps = 4/403 (0%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE WLNKAT+PS ++DW I FCDQ+N + GP LLAHKIQSPQE EA+ ALTV
Sbjct: 9 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEAVQALTV 68
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ +CG +FH+EV KFRFLNELIKV+SPKYLG +EKVK ++IE+LYSWT+ PE+
Sbjct: 69 LEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTLALPEE 128
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDK-ILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
KI+DAY MLK+QGI+ DP + VD+ ++P P P PK+ +FD DEEKSKLL RLLKS +P
Sbjct: 129 SKIKDAYHMLKRQGIVHSDPLISVDRTLIPSPPPRPKNPVFD-DEEKSKLLARLLKSKNP 187
Query: 689 EDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEA 868
+DLQ AN+LIK++ VK+L EML Y R G A D+E
Sbjct: 188 DDLQEANKLIKSMVKEDEARVQKVTERLHTLEEVDNSVKLLGEMLRHYNREGSAEADKEL 247
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
++ +++RCE R TLF+LAS +L +ILQA+D L++ + YK VVEG+V G
Sbjct: 248 MKELFDRCENKRRTLFKLASETEDNDSSLGDILQASDNLSRVINSYKTVVEGQVVNGEVV 307
Query: 1049 VSSVEDTPVSRGCTKNCPLIDLEGDSGSAQAGVATPSLLHQDLAALGISDAPVTNKAAG- 1225
S++ D+ ++G LIDL +A P L A GI P +A+G
Sbjct: 308 TSAIPDSEGNQG-----TLIDL----AEVEAPSGPPPALAPAPAGSGIPVLPPPPQASGP 358
Query: 1226 --QHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGP 1348
H + P + A+ E L L P P P
Sbjct: 359 GRSHSAGQPDAPPGPSSTSNALSLLDEELLCLGLTDPAPSAPP 401
>ref|NP_001092624.1| target of myb1-like 2 [Bos taurus].
Length = 390
Score = 90.5 bits (223), Expect = 3e-18
Identities = 92/368 (25%), Positives = 150/368 (40%), Gaps = 9/368 (2%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
L KATD S+ +DW+ CD +N GP L ++ + +E + ALTVLE
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F++ L+KV+SPK + V+ +++ ++ +W F P+
Sbjct: 77 CVKNCGHRFHVLVANRDFIDSVLVKVISPK---NSPPTIVQDKVLALIQAWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
+ AY+ LK++G+ + P +D + P +P D K ++L S+
Sbjct: 134 LTGVVHAYEELKRKGV--EFPMADLDALSPIHTPQRSVPEVDPAATMPKSQSQLRTSSSS 191
Query: 689 EDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEA 868
A L + + KV+ EML+ + D E
Sbjct: 192 YSAPQAPAL--STAGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQEDSSDLEL 249
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
LQ ++ C ++ + L S E+L ND L L Y++ R +
Sbjct: 250 LQELHRTCRAMQQRVVELIS-RVCNEEVTEELLHVNDDLNNVFLRYERFERYR---SGRS 305
Query: 1049 VSSVEDTPVSRGCTKNCPLIDLEGDSGSAQA----GVATPSLLHQDLAALGISDAPVTNK 1216
+ + +S N LIDL S + + A PS L LA L + V+
Sbjct: 306 AQNATNGVLSEVTEDN--LIDLGPGSPAVVSPTVGSTAPPSSLSSQLAGLDLGTESVSGT 363
Query: 1217 AAGQHCCQ 1240
+ CQ
Sbjct: 364 LSSLQQCQ 371
>ref|NP_001069079.1| TOM1-like protein 1 [Bos taurus].
Length = 473
Score = 73.2 bits (178), Expect = 6e-13
Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKI-QSPQEKEALYALTVLEM 340
+ KAT + +DW + CD +NT +GP L +I ++ KE L++++M
Sbjct: 19 IEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDM 78
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDI- 514
C+ +CG F S + K F+ + L+K+L+P+Y ++ RI+ + +W+ FP +
Sbjct: 79 CMQNCGPSFQSLIVKKEFVKDSLVKLLNPRYT---LPIDIQNRILNFIKTWSQGFPGGVD 135
Query: 515 --KIRDAYQMLKKQGI 556
+++D Y L K+G+
Sbjct: 136 VSEVKDVYLDLLKKGV 151
>ref|NP_001030187.1| target of Myb protein 1 [Bos taurus].
Length = 492
Score = 71.2 bits (173), Expect = 2e-12
Identities = 71/312 (22%), Positives = 127/312 (40%), Gaps = 9/312 (2%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
+ KATD S+ +DW+ CD +N GP + +I + E + ALTVLE
Sbjct: 17 IEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIVGNKNFHEVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFL-NELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F+ L++ + PK + V +++ ++ SW F P+
Sbjct: 77 CVKNCGHRFHVLVASQDFVEGVLVRTILPK---NNPPTIVHDKVLTLIQSWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
+ Y+ L+++G+ + P +D + P + P+ ++F+++ + + S+
Sbjct: 134 LTGVVAVYEDLRRKGL--EFPMTDLDMLSPIHT--PQRTVFNSETQSGQNSVGTDTSHRG 189
Query: 689 EDLQAANRL----IKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPP 856
+ Q L + +V+V+ EML+ P
Sbjct: 190 DSNQQTTPLHTSALLPSDTPITPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQTEPA 249
Query: 857 DQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTF 1036
D E LQ + C ++ + L E+L ND L L +++ R
Sbjct: 250 DLELLQELNRTCRSMQQRVLELIPRIANEQLT-EELLIVNDNLNNVFLRHERFERLRTGQ 308
Query: 1037 GSTAVSSVEDTP 1072
+ A S E P
Sbjct: 309 TTKAPSEAEAAP 320
>ref|XP_002704416.1| PREDICTED: target of myb1 [Bos taurus].
Length = 433
Score = 71.2 bits (173), Expect = 2e-12
Identities = 71/312 (22%), Positives = 127/312 (40%), Gaps = 9/312 (2%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
+ KATD S+ +DW+ CD +N GP + +I + E + ALTVLE
Sbjct: 17 IEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIVGNKNFHEVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFL-NELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F+ L++ + PK + V +++ ++ SW F P+
Sbjct: 77 CVKNCGHRFHVLVASQDFVEGVLVRTILPK---NNPPTIVHDKVLTLIQSWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
+ Y+ L+++G+ + P +D + P + P+ ++F+++ + + S+
Sbjct: 134 LTGVVAVYEDLRRKGL--EFPMTDLDMLSPIHT--PQRTVFNSETQSGQNSVGTDTSHRG 189
Query: 689 EDLQAANRL----IKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPP 856
+ Q L + +V+V+ EML+ P
Sbjct: 190 DSNQQTTPLHTSALLPSDTPITPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQTEPA 249
Query: 857 DQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTF 1036
D E LQ + C ++ + L E+L ND L L +++ R
Sbjct: 250 DLELLQELNRTCRSMQQRVLELIPRIANEQLT-EELLIVNDNLNNVFLRHERFERLRTGQ 308
Query: 1037 GSTAVSSVEDTP 1072
+ A S E P
Sbjct: 309 TTKAPSEAEAAP 320
>ref|NP_001039554.1| hepatocyte growth factor-regulated tyrosine kinase substrate [Bos
taurus].
Length = 776
Score = 65.9 bits (159), Expect = 9e-11
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Frame = +2
Query: 155 ELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTVL 334
E L+KAT + E DW +I CD + + + K+ ALYAL V+
Sbjct: 9 ERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVSSIKKKVNDKNPHVALYALEVM 68
Query: 335 EMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDI 514
E V +CG+ H EVA + + EL +L + V+ +I+ ++ +W F +
Sbjct: 69 ESVVKNCGQTVHDEVANKQTMEELKDLLKRQ-----VEVNVRNKILYLIQAWAHAFRNEP 123
Query: 515 K---IRDAYQMLKKQG 553
K ++D YQ++K +G
Sbjct: 124 KYKVVQDTYQIMKVEG 139
>ref|NP_001069574.1| signal transducing adapter molecule 2 [Bos taurus].
Length = 525
Score = 63.9 bits (154), Expect = 3e-10
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTVLEMC 343
+ KAT+ + +DWS I + CD+V + PNG + ++ AL ALT+L C
Sbjct: 13 VEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGAC 72
Query: 344 VNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDIK-- 517
V +CG+ FH EV F E+ V+ K KV ++ ++ W+ F +D +
Sbjct: 73 VANCGKIFHLEVCSRDFATEVRAVIKNK-----AHPKVCEKLKSLMVEWSEEFQKDPQFS 127
Query: 518 -IRDAYQMLKKQGI 556
I + +K++GI
Sbjct: 128 LISATIKSMKEEGI 141
>ref|NP_001070310.1| signal transducing adapter molecule 1 [Bos taurus].
Length = 534
Score = 62.4 bits (150), Expect = 1e-09
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTVLEMC 343
+ KAT + +DW I + CD+V GP + ++ A+ ALT+L C
Sbjct: 13 VEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGAC 72
Query: 344 VNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDIK-- 517
V++CG+ FH EV F +E+ VL+ + EK+K ++E WT F D +
Sbjct: 73 VSNCGKIFHLEVCSRDFASEVSNVLNKGH--PKVCEKLKALMVE----WTDEFKNDPQLS 126
Query: 518 -IRDAYQMLKKQGI 556
I + LK+QG+
Sbjct: 127 LISAMIKNLKEQGV 140
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,994,725
Number of extensions: 2041767
Number of successful extensions: 8769
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 8673
Number of HSP's successfully gapped: 9
Length of query: 496
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 390
Effective length of database: 14,174,046
Effective search space: 5527877940
Effective search space used: 5527877940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004450
(1489 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850701.1| PREDICTED: similar to ADP-ribosylation factor b... 711 0.0
Alignment gi|XP_861631.1| PREDICTED: similar to ADP-ribosylation factor b... 325 9e-89
Alignment gi|XP_538387.2| PREDICTED: similar to ADP-ribosylation factor b... 325 9e-89
Alignment gi|XP_850501.1| PREDICTED: similar to ADP-ribosylation factor b... 313 3e-85
Alignment gi|XP_540429.2| PREDICTED: similar to ADP-ribosylation factor b... 308 7e-84
Alignment gi|XP_861602.1| PREDICTED: similar to golgi associated, gamma a... 282 7e-76
Alignment gi|XP_864538.1| PREDICTED: similar to target of myb1-like 2 iso... 86 9e-17
Alignment gi|XP_864586.1| PREDICTED: similar to target of myb1-like 2 iso... 85 2e-16
Alignment gi|XP_546659.2| PREDICTED: similar to target of myb1-like 2 iso... 83 6e-16
Alignment gi|XP_864554.1| PREDICTED: similar to target of myb1-like 2 iso... 82 1e-15
>ref|XP_850701.1| PREDICTED: similar to ADP-ribosylation factor binding protein GGA2
(Golgi-localized, gamma ear-containing, ARF-binding
protein 2) (Gamma-adaptin related protein 2) (VHS domain
and ear domain of gamma-adaptin) (Vear) [Canis
familiaris].
Length = 584
Score = 711 bits (1836), Expect = 0.0
Identities = 352/434 (81%), Positives = 373/434 (85%), Gaps = 6/434 (1%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTVLEMC 343
+NKATDP +SEQDWSAIQNFCDQVNTDPNGPTH PWLLAHKIQSPQEKE+LYALTVLEMC
Sbjct: 1 MNKATDPGVSEQDWSAIQNFCDQVNTDPNGPTHAPWLLAHKIQSPQEKESLYALTVLEMC 60
Query: 344 VNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDIKIR 523
+NHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGR+IEIL+SWTVWFPEDIKIR
Sbjct: 61 MNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRVIEILFSWTVWFPEDIKIR 120
Query: 524 DAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPEDLQA 703
DAYQMLKKQGI+KQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPEDLQA
Sbjct: 121 DAYQMLKKQGIVKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPEDLQA 180
Query: 704 ANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEALQVVY 883
ANRLIKNL HVKVLQEMLS YRRPGQAPPDQEALQVVY
Sbjct: 181 ANRLIKNLVKEEQEKSEKVSKRVSAVEEVRSHVKVLQEMLSMYRRPGQAPPDQEALQVVY 240
Query: 884 ERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTAVSSVE 1063
ERCEKLRPTLFRLAS ALAEILQANDLLTQGVLLYKQV+EGRV FG+T SSV
Sbjct: 241 ERCEKLRPTLFRLASDTTDDDDALAEILQANDLLTQGVLLYKQVMEGRVIFGNTVTSSVG 300
Query: 1064 DTPVSR------GCTKNCPLIDLEGDSGSAQAGVATPSLLHQDLAALGISDAPVTNKAAG 1225
D PVSR G K+CPLIDLE D+GS +AG PSLLHQDLAALG+ DAP+TN+ A
Sbjct: 301 DLPVSRVFQKPAGFMKSCPLIDLEVDNGSEEAGTVAPSLLHQDLAALGLGDAPITNEVAD 360
Query: 1226 QHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGPLNYIPQKSIPKEVPPGTKS 1405
Q+CC+E++ P AST GG V+SP AERNLLDLLSPQP PGPLNY+PQKSIPKEVPPGTKS
Sbjct: 361 QNCCKEKRNPTASTLPGGGVQSPPAERNLLDLLSPQPCPGPLNYVPQKSIPKEVPPGTKS 420
Query: 1406 SPGWSWEAGPLASS 1447
SPGWSWEAGPLASS
Sbjct: 421 SPGWSWEAGPLASS 434
>ref|XP_861631.1| PREDICTED: similar to ADP-ribosylation factor binding protein GGA1
(Golgi-localized, gamma ear-containing, ARF-binding
protein 1) (Gamma-adaptin related protein 1) isoform 4
[Canis familiaris].
Length = 638
Score = 325 bits (832), Expect = 9e-89
Identities = 181/363 (49%), Positives = 233/363 (64%), Gaps = 14/363 (3%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE +N+AT+P E +W++I FC+Q+N D GP LLAHKIQSPQE EA+ ALTV
Sbjct: 6 LEARINRATNPLNKELNWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTV 65
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ CG++FH EV KFRFLNELIKV+SPKYLGS T+EKVK +I+E+LYSWTV PE+
Sbjct: 66 LETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 125
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 691
+KI +AYQMLKKQGI+K DPKLP D P P P PK+ IF+ DEEKSK+L RLLKS+HPE
Sbjct: 126 VKIAEAYQMLKKQGIVKSDPKLPDDATFPLPPPRPKNVIFE-DEEKSKMLARLLKSSHPE 184
Query: 692 DLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPG-QAPPDQEA 868
DL+AAN+LIK + +VK+L EM+ + + G A ++
Sbjct: 185 DLRAANKLIKEMVQEDQKRMEKISKRVSAIEEVNNNVKLLTEMVMSHSQGGASARSSEDL 244
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
++ +Y+RCE++RPTLFRLAS ALAEILQAND LTQ + LYKQ+V G G A
Sbjct: 245 MKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDAA 304
Query: 1049 VSSVEDTPVSRGCTKNCPLIDL-------------EGDSGSAQAGVATPSLLHQDLAALG 1189
SS+ P S + +DL D S++ + SLL +L +LG
Sbjct: 305 ASSI---PGSTSALLDLSGLDLPPTGTTYPGVPTRPADPASSEQPSTSVSLLDDELMSLG 361
Query: 1190 ISD 1198
+SD
Sbjct: 362 LSD 364
>ref|XP_538387.2| PREDICTED: similar to ADP-ribosylation factor binding protein GGA1
(Golgi-localized, gamma ear-containing, ARF-binding
protein 1) (Gamma-adaptin related protein 1) isoform 1
[Canis familiaris].
Length = 632
Score = 325 bits (832), Expect = 9e-89
Identities = 181/363 (49%), Positives = 233/363 (64%), Gaps = 14/363 (3%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE +N+AT+P E +W++I FC+Q+N D GP LLAHKIQSPQE EA+ ALTV
Sbjct: 6 LEARINRATNPLNKELNWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTV 65
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ CG++FH EV KFRFLNELIKV+SPKYLGS T+EKVK +I+E+LYSWTV PE+
Sbjct: 66 LETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 125
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 691
+KI +AYQMLKKQGI+K DPKLP D P P P PK+ IF+ DEEKSK+L RLLKS+HPE
Sbjct: 126 VKIAEAYQMLKKQGIVKSDPKLPDDATFPLPPPRPKNVIFE-DEEKSKMLARLLKSSHPE 184
Query: 692 DLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPG-QAPPDQEA 868
DL+AAN+LIK + +VK+L EM+ + + G A ++
Sbjct: 185 DLRAANKLIKEMVQEDQKRMEKISKRVSAIEEVNNNVKLLTEMVMSHSQGGASARSSEDL 244
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
++ +Y+RCE++RPTLFRLAS ALAEILQAND LTQ + LYKQ+V G G A
Sbjct: 245 MKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDAA 304
Query: 1049 VSSVEDTPVSRGCTKNCPLIDL-------------EGDSGSAQAGVATPSLLHQDLAALG 1189
SS+ P S + +DL D S++ + SLL +L +LG
Sbjct: 305 ASSI---PGSTSALLDLSGLDLPPTGTTYPGVPTRPADPASSEQPSTSVSLLDDELMSLG 361
Query: 1190 ISD 1198
+SD
Sbjct: 362 LSD 364
>ref|XP_850501.1| PREDICTED: similar to ADP-ribosylation factor binding protein GGA1
(Golgi-localized, gamma ear-containing, ARF-binding
protein 1) (Gamma-adaptin related protein 1) isoform 2
[Canis familiaris].
Length = 651
Score = 313 bits (802), Expect = 3e-85
Identities = 181/382 (47%), Positives = 233/382 (60%), Gaps = 33/382 (8%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE +N+AT+P E +W++I FC+Q+N D GP LLAHKIQSPQE EA+ ALTV
Sbjct: 6 LEARINRATNPLNKELNWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTV 65
Query: 332 -------------------LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEK 454
LE C+ CG++FH EV KFRFLNELIKV+SPKYLGS T+EK
Sbjct: 66 RRGENISRRPGCQISRRPVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEK 125
Query: 455 VKGRIIEILYSWTVWFPEDIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFD 634
VK +I+E+LYSWTV PE++KI +AYQMLKKQGI+K DPKLP D P P P PK+ IF+
Sbjct: 126 VKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDATFPLPPPRPKNVIFE 185
Query: 635 ADEEKSKLLTRLLKSNHPEDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQ 814
DEEKSK+L RLLKS+HPEDL+AAN+LIK + +VK+L
Sbjct: 186 -DEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVSAIEEVNNNVKLLT 244
Query: 815 EMLSRYRRPG-QAPPDQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQ 991
EM+ + + G A ++ ++ +Y+RCE++RPTLFRLAS ALAEILQAND LTQ
Sbjct: 245 EMVMSHSQGGASARSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQ 304
Query: 992 GVLLYKQVVEGRVTFGSTAVSSVEDTPVSRGCTKNCPLIDL-------------EGDSGS 1132
+ LYKQ+V G G A SS+ P S + +DL D S
Sbjct: 305 VINLYKQLVRGEEVNGDAAASSI---PGSTSALLDLSGLDLPPTGTTYPGVPTRPADPAS 361
Query: 1133 AQAGVATPSLLHQDLAALGISD 1198
++ + SLL +L +LG+SD
Sbjct: 362 SEQPSTSVSLLDDELMSLGLSD 383
>ref|XP_540429.2| PREDICTED: similar to ADP-ribosylation factor binding protein GGA3
(Golgi-localized, gamma ear-containing, ARF-binding
protein 3) [Canis familiaris].
Length = 729
Score = 308 bits (790), Expect = 7e-84
Identities = 174/397 (43%), Positives = 240/397 (60%), Gaps = 2/397 (0%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE WLNKAT+PS ++DW I FCDQ+N + GP LLAHKIQSPQE EA+ ALTV
Sbjct: 9 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEAVQALTV 68
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ +CG +FH+EV KFRFLNELIKV+SPKYLG +EKVK ++IE+LYSWT+ PE+
Sbjct: 69 LEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTLALPEE 128
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDK-ILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
KI+DAY MLK+QGI++ DP +P+D+ ++P P P PK+ +FD DEEKSKLL +LLKS +P
Sbjct: 129 TKIKDAYHMLKRQGIVQSDPLIPMDRTLIPSPPPRPKNPVFD-DEEKSKLLAKLLKSKNP 187
Query: 689 EDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEA 868
+DLQ AN+LIK++ +VK+L EML Y + + D+E
Sbjct: 188 DDLQEANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVKLLNEMLLHYSKEDSSEADKEL 247
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
++ +++RCE R TLF+LAS +L +ILQA+D L++ + YK VVEG+V G A
Sbjct: 248 MKELFDRCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTVVEGQVINGEVA 307
Query: 1049 VSSVEDTPVSRGCTKNCPLIDL-EGDSGSAQAGVATPSLLHQDLAALGISDAPVTNKAAG 1225
S++ D+ + + LIDL E D+ + + V P+ + L P T+
Sbjct: 308 TSAMPDSEGNHSRNQG-TLIDLAELDTPGSSSSVLAPAPPSSGIPIL--PPPPQTSGPGR 364
Query: 1226 QHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQP 1336
H + + A+ E L L P P
Sbjct: 365 SHSSSQAEVTPTPNSTSNALCLLDEELLCLGLADPAP 401
>ref|XP_861602.1| PREDICTED: similar to golgi associated, gamma adaptin ear
containing, ARF binding protein 1 isoform 2 isoform 3
[Canis familiaris].
Length = 545
Score = 282 bits (721), Expect = 7e-76
Identities = 146/269 (54%), Positives = 187/269 (69%), Gaps = 1/269 (0%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE +N+AT+P E +W++I FC+Q+N D GP LLAHKIQSPQE EA+ ALTV
Sbjct: 6 LEARINRATNPLNKELNWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTV 65
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ CG++FH EV KFRFLNELIKV+SPKYLGS T+EKVK +I+E+LYSWTV PE+
Sbjct: 66 LETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 125
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 691
+KI +AYQMLKKQGI+K DPKLP D P P P PK+ IF+ DEEKSK+L RLLKS+HPE
Sbjct: 126 VKIAEAYQMLKKQGIVKSDPKLPDDATFPLPPPRPKNVIFE-DEEKSKMLARLLKSSHPE 184
Query: 692 DLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPG-QAPPDQEA 868
DL+AAN+LIK + +VK+L EM+ + + G A ++
Sbjct: 185 DLRAANKLIKEMVQEDQKRMEKISKRVSAIEEVNNNVKLLTEMVMSHSQGGASARSSEDL 244
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXAL 955
++ +Y+RCE++RPTLFRLAS AL
Sbjct: 245 MKELYQRCERMRPTLFRLASDTEDNDEAL 273
>ref|XP_864538.1| PREDICTED: similar to target of myb1-like 2 isoform 6 [Canis
familiaris].
Length = 505
Score = 85.9 bits (211), Expect = 9e-17
Identities = 102/430 (23%), Positives = 172/430 (40%), Gaps = 15/430 (3%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
L KATD S+ +DW+ CD +N GP L ++ + +E + ALTVLE
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F++ L+K++SPK + V+ +++ ++ +W F P+
Sbjct: 77 CVKNCGHRFHILVANRDFIDSVLVKIISPK---NNPPTIVQDKVLALIQAWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKS-----SIFDADEEKSKLLTRLL 673
+ Y+ LK++G+ + P +D + P +P S F +E S R L
Sbjct: 134 LTGVVHIYEELKRKGV--EFPMADLDALSPIHTPQRVSLQATTPAFQRPQESSGSGRRTL 191
Query: 674 KSNHPEDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAP 853
S H + + L + KV+ EML+ +
Sbjct: 192 -SQHTLPRPMPSVVPGLLTFPFSAGPEEIARLRSELDVVRGNTKVMSEMLTEMVPGQEDS 250
Query: 854 PDQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVT 1033
D E LQ + C ++ + L S E+L ND L L Y++ R
Sbjct: 251 SDLELLQELNRTCRAMQQRIVELIS-RVSNEEVTEELLHVNDDLNNVFLRYERFERYR-- 307
Query: 1034 FGSTAVSSVEDTPVSRGCTKNCPLIDLEGDSGSAQA----GVATPSLLHQDLAALGISDA 1201
+V + + ++ N LIDL S + + A PS L LA L +
Sbjct: 308 -SGRSVQNASNGVLNEVTEDN--LIDLGPGSPAVVSPMVGNTAPPSSLSSQLAGLDLGTE 364
Query: 1202 PVTNKAAG-QHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGPLNYIPQKSIP 1378
V+ + Q C + + + G ++ + +R + PQ G + + +
Sbjct: 365 SVSGTLSSLQQCNPRDGFDMFAQTRGNSL---AEQRKTVTYEDPQAVGGLASALDSRKQS 421
Query: 1379 KEVPPGTKSS 1408
EV P + S
Sbjct: 422 SEVIPVAQPS 431
>ref|XP_864586.1| PREDICTED: similar to target of myb1-like 2 isoform 9 [Canis
familiaris].
Length = 493
Score = 85.1 bits (209), Expect = 2e-16
Identities = 99/433 (22%), Positives = 174/433 (40%), Gaps = 18/433 (4%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
L KATD S+ +DW+ CD +N GP L ++ + +E + ALTVLE
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F++ L+K++SPK + V+ +++ ++ +W F P+
Sbjct: 77 CVKNCGHRFHILVANRDFIDSVLVKIISPK---NNPPTIVQDKVLALIQAWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDAD--------EEKSKLLT 664
+ Y+ LK++G+ + P +D + P + P+ S+ + D + + +
Sbjct: 134 LTGVVHIYEELKRKGV--EFPMADLDALSPIHT--PQRSVPEVDPATTMPRSQSQQRTSA 189
Query: 665 RLLKSNHPEDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPG 844
S P ++ I L + KV+ EML+
Sbjct: 190 SSYSSPSPAPYSSSQSQIARL--------------RSELDVVRGNTKVMSEMLTEMVPGQ 235
Query: 845 QAPPDQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEG 1024
+ D E LQ + C ++ + L S E+L ND L L Y++
Sbjct: 236 EDSSDLELLQELNRTCRAMQQRIVELIS-RVSNEEVTEELLHVNDDLNNVFLRYERFERY 294
Query: 1025 RVTFGSTAVSSVEDTPVSRGCTKNCPLIDLEGDSGSAQA----GVATPSLLHQDLAALGI 1192
R +V + + ++ N LIDL S + + A PS L LA L +
Sbjct: 295 R---SGRSVQNASNGVLNEVTEDN--LIDLGPGSPAVVSPMVGNTAPPSSLSSQLAGLDL 349
Query: 1193 SDAPVTNKAAG-QHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGPLNYIPQK 1369
V+ + Q C + + + G ++ + +R + PQ G + + +
Sbjct: 350 GTESVSGTLSSLQQCNPRDGFDMFAQTRGNSL---AEQRKTVTYEDPQAVGGLASALDSR 406
Query: 1370 SIPKEVPPGTKSS 1408
EV P + S
Sbjct: 407 KQSSEVIPVAQPS 419
>ref|XP_546659.2| PREDICTED: similar to target of myb1-like 2 isoform 4 [Canis
familiaris].
Length = 508
Score = 83.2 bits (204), Expect = 6e-16
Identities = 98/434 (22%), Positives = 175/434 (40%), Gaps = 19/434 (4%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
L KATD S+ +DW+ CD +N GP L ++ + +E + ALTVLE
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F++ L+K++SPK + V+ +++ ++ +W F P+
Sbjct: 77 CVKNCGHRFHILVANRDFIDSVLVKIISPK---NNPPTIVQDKVLALIQAWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDAD--------EEKSKLLT 664
+ Y+ LK++G+ + P +D + P + P+ S+ + D + + +
Sbjct: 134 LTGVVHIYEELKRKGV--EFPMADLDALSPIHT--PQRSVPEVDPATTMPRSQSQQRTSA 189
Query: 665 RLLKSNHPEDLQAANRL-IKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRP 841
S P +A + ++ + KV+ EML+
Sbjct: 190 SSYSSPSPAPYSSAPQAPALSVTGPIMANSEQIARLRSELDVVRGNTKVMSEMLTEMVPG 249
Query: 842 GQAPPDQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVE 1021
+ D E LQ + C ++ + L S E+L ND L L Y++
Sbjct: 250 QEDSSDLELLQELNRTCRAMQQRIVELIS-RVSNEEVTEELLHVNDDLNNVFLRYERFER 308
Query: 1022 GRVTFGSTAVSSVEDTPVSRGCTKNCPLIDLEGDSGSAQA----GVATPSLLHQDLAALG 1189
R +V + + ++ N LIDL S + + A PS L LA L
Sbjct: 309 YR---SGRSVQNASNGVLNEVTEDN--LIDLGPGSPAVVSPMVGNTAPPSSLSSQLAGLD 363
Query: 1190 ISDAPVTNKAAG-QHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGPLNYIPQ 1366
+ V+ + Q C + + + G ++ + +R + PQ G + +
Sbjct: 364 LGTESVSGTLSSLQQCNPRDGFDMFAQTRGNSL---AEQRKTVTYEDPQAVGGLASALDS 420
Query: 1367 KSIPKEVPPGTKSS 1408
+ EV P + S
Sbjct: 421 RKQSSEVIPVAQPS 434
>ref|XP_864554.1| PREDICTED: similar to target of myb1-like 2 isoform 7 [Canis
familiaris].
Length = 473
Score = 82.0 bits (201), Expect = 1e-15
Identities = 99/425 (23%), Positives = 169/425 (39%), Gaps = 10/425 (2%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
L KATD S+ +DW+ CD +N GP L ++ + +E + ALTVLE
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F++ L+K++SPK + V+ +++ ++ +W F P+
Sbjct: 77 CVKNCGHRFHILVANRDFIDSVLVKIISPK---NNPPTIVQDKVLALIQAWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
+ Y+ LK++G+ + P +D + P +P + L L P
Sbjct: 134 LTGVVHIYEELKRKGV--EFPMADLDALSPIHTP------------QRTYLAPALSVTGP 179
Query: 689 EDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEA 868
+ A + I L + KV+ EML+ + D E
Sbjct: 180 --IMANSEQIARL--------------RSELDVVRGNTKVMSEMLTEMVPGQEDSSDLEL 223
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
LQ + C ++ + L S E+L ND L L Y++ R +
Sbjct: 224 LQELNRTCRAMQQRIVELIS-RVSNEEVTEELLHVNDDLNNVFLRYERFERYR---SGRS 279
Query: 1049 VSSVEDTPVSRGCTKNCPLIDLEGDSGSAQA----GVATPSLLHQDLAALGISDAPVTNK 1216
V + + ++ N LIDL S + + A PS L LA L + V+
Sbjct: 280 VQNASNGVLNEVTEDN--LIDLGPGSPAVVSPMVGNTAPPSSLSSQLAGLDLGTESVSGT 337
Query: 1217 AAG-QHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGPLNYIPQKSIPKEVPP 1393
+ Q C + + + G ++ + +R + PQ G + + + EV P
Sbjct: 338 LSSLQQCNPRDGFDMFAQTRGNSL---AEQRKTVTYEDPQAVGGLASALDSRKQSSEVIP 394
Query: 1394 GTKSS 1408
+ S
Sbjct: 395 VAQPS 399
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,938,665
Number of extensions: 1978288
Number of successful extensions: 9044
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 8958
Number of HSP's successfully gapped: 23
Length of query: 496
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 389
Effective length of database: 15,307,552
Effective search space: 5954637728
Effective search space used: 5954637728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004450
(1489 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055859.1| ADP-ribosylation factor-binding protein GGA2 [H... 710 0.0
Alignment gi|NP_001166158.1| ADP-ribosylation factor-binding protein GGA1... 326 4e-89
Alignment gi|NP_037497.1| ADP-ribosylation factor-binding protein GGA1 is... 326 4e-89
Alignment gi|NP_619525.1| ADP-ribosylation factor-binding protein GGA3 is... 311 1e-84
Alignment gi|NP_001001560.1| ADP-ribosylation factor-binding protein GGA1... 284 1e-76
Alignment gi|NP_001166159.1| ADP-ribosylation factor-binding protein GGA1... 254 1e-67
Alignment gi|NP_054720.1| ADP-ribosylation factor-binding protein GGA3 is... 242 7e-64
Alignment gi|NP_001166174.1| ADP-ribosylation factor-binding protein GGA3... 231 1e-60
Alignment gi|NP_001166175.1| ADP-ribosylation factor-binding protein GGA3... 158 1e-38
Alignment gi|NP_001076437.1| TOM1-like protein 2 isoform 3 [Homo sapiens]. 84 3e-16
>ref|NP_055859.1| ADP-ribosylation factor-binding protein GGA2 [Homo sapiens].
Length = 613
Score = 710 bits (1833), Expect = 0.0
Identities = 353/438 (80%), Positives = 372/438 (84%), Gaps = 6/438 (1%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LELWLNKATDPSMSEQDWSAIQNFC+QVNTDPNGPTH PWLLAHKIQSPQEKEALYALTV
Sbjct: 26 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTV 85
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LEMC+NHCGEKFHSEVAKFRFLNELIKVLSPKYLGSW T KVKGR+IEIL+SWTVWFPED
Sbjct: 86 LEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPED 145
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 691
IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE
Sbjct: 146 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 205
Query: 692 DLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEAL 871
DLQAANRLIKNL HVKVLQEMLS YRRPGQAPPDQEAL
Sbjct: 206 DLQAANRLIKNLVKEEQEKSEKVSKRVSAVEEVRSHVKVLQEMLSMYRRPGQAPPDQEAL 265
Query: 872 QVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTAV 1051
QVVYERCEKLRPTLFRLAS ALAEILQANDLLTQGVLLYKQV+EGRVTFG+
Sbjct: 266 QVVYERCEKLRPTLFRLASDTTDDDDALAEILQANDLLTQGVLLYKQVMEGRVTFGNRVT 325
Query: 1052 SSVEDTPVSR------GCTKNCPLIDLEGDSGSAQAGVATPSLLHQDLAALGISDAPVTN 1213
SS+ D PVSR GC K CPLIDLE D+G AQ G PSLLHQDLAALGISDAPVT
Sbjct: 326 SSLGDIPVSRVFQNPAGCMKTCPLIDLEVDNGPAQMGTVVPSLLHQDLAALGISDAPVTG 385
Query: 1214 KAAGQHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGPLNYIPQKSIPKEVPP 1393
+GQ+CC+E++ P +ST GG V++PSA+RNLLDLLS QP P PLNY+ QKS+PKEVPP
Sbjct: 386 MVSGQNCCEEKRNPSSSTLPGGGVQNPSADRNLLDLLSAQPAPCPLNYVSQKSVPKEVPP 445
Query: 1394 GTKSSPGWSWEAGPLASS 1447
GTKSSPGWSWEAGPLA S
Sbjct: 446 GTKSSPGWSWEAGPLAPS 463
>ref|NP_001166158.1| ADP-ribosylation factor-binding protein GGA1 isoform 4 [Homo
sapiens].
Length = 635
Score = 326 bits (835), Expect = 4e-89
Identities = 183/363 (50%), Positives = 231/363 (63%), Gaps = 14/363 (3%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE +N+AT+P E DW++I FC+Q+N D GP LLAHKIQSPQE EA+ ALTV
Sbjct: 10 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTV 69
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ CG++FH EV KFRFLNELIKV+SPKYLGS T+EKVK +I+E+LYSWTV PE+
Sbjct: 70 LETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 129
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 691
+KI +AYQMLKKQGI+K DPKLP D P P P PK+ IF+ DEEKSK+L RLLKS+HPE
Sbjct: 130 VKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFE-DEEKSKMLARLLKSSHPE 188
Query: 692 DLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEAL 871
DL+AAN+LIK + +VK+L EM+ + + G A E L
Sbjct: 189 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDL 248
Query: 872 -QVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
+ +Y+RCE++RPTLFRLAS ALAEILQAND LTQ + LYKQ+V G G
Sbjct: 249 MKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDAT 308
Query: 1049 VSSVEDTPVSRGCTKNCPLIDL-------------EGDSGSAQAGVATPSLLHQDLAALG 1189
S+ P S + +DL G+ S + A+ SLL +L +LG
Sbjct: 309 AGSI---PGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLG 365
Query: 1190 ISD 1198
+SD
Sbjct: 366 LSD 368
>ref|NP_037497.1| ADP-ribosylation factor-binding protein GGA1 isoform 1 [Homo
sapiens].
Length = 639
Score = 326 bits (835), Expect = 4e-89
Identities = 183/363 (50%), Positives = 231/363 (63%), Gaps = 14/363 (3%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE +N+AT+P E DW++I FC+Q+N D GP LLAHKIQSPQE EA+ ALTV
Sbjct: 10 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTV 69
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ CG++FH EV KFRFLNELIKV+SPKYLGS T+EKVK +I+E+LYSWTV PE+
Sbjct: 70 LETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 129
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 691
+KI +AYQMLKKQGI+K DPKLP D P P P PK+ IF+ DEEKSK+L RLLKS+HPE
Sbjct: 130 VKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFE-DEEKSKMLARLLKSSHPE 188
Query: 692 DLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEAL 871
DL+AAN+LIK + +VK+L EM+ + + G A E L
Sbjct: 189 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDL 248
Query: 872 -QVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
+ +Y+RCE++RPTLFRLAS ALAEILQAND LTQ + LYKQ+V G G
Sbjct: 249 MKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDAT 308
Query: 1049 VSSVEDTPVSRGCTKNCPLIDL-------------EGDSGSAQAGVATPSLLHQDLAALG 1189
S+ P S + +DL G+ S + A+ SLL +L +LG
Sbjct: 309 AGSI---PGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLG 365
Query: 1190 ISD 1198
+SD
Sbjct: 366 LSD 368
>ref|NP_619525.1| ADP-ribosylation factor-binding protein GGA3 isoform long [Homo
sapiens].
Length = 723
Score = 311 bits (796), Expect = 1e-84
Identities = 162/338 (47%), Positives = 226/338 (66%), Gaps = 2/338 (0%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE WLNKAT+PS ++DW I FCDQ+N + GP LLAHKIQSPQE EAL ALTV
Sbjct: 9 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTV 68
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ +CG +FH+EV KFRFLNELIKV+SPKYLG +EKVK ++IE+LYSWT+ PE+
Sbjct: 69 LEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEE 128
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDK-ILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
KI+DAY MLK+QGI++ DP +PVD+ ++P P P PK+ +FD DEEKSKLL +LLKS +P
Sbjct: 129 AKIKDAYHMLKRQGIVQSDPPIPVDRTLIPSPPPRPKNPVFD-DEEKSKLLAKLLKSKNP 187
Query: 689 EDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEA 868
+DLQ AN+LIK++ +V++L EML Y + + D+E
Sbjct: 188 DDLQEANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDREL 247
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
++ ++++CE R TLF+LAS +L +ILQA+D L++ + YK ++EG+V G A
Sbjct: 248 MKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGEVA 307
Query: 1049 VSSVEDTPVSRGCTKNCPLIDL-EGDSGSAQAGVATPS 1159
++ D+ + C+ LIDL E D+ ++ + V P+
Sbjct: 308 TLTLPDSEGNSQCSNQGTLIDLAELDTTNSLSSVLAPA 345
>ref|NP_001001560.1| ADP-ribosylation factor-binding protein GGA1 isoform 2 [Homo
sapiens].
Length = 552
Score = 284 bits (727), Expect = 1e-76
Identities = 149/269 (55%), Positives = 186/269 (69%), Gaps = 1/269 (0%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE +N+AT+P E DW++I FC+Q+N D GP LLAHKIQSPQE EA+ ALTV
Sbjct: 10 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTV 69
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ CG++FH EV KFRFLNELIKV+SPKYLGS T+EKVK +I+E+LYSWTV PE+
Sbjct: 70 LETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 129
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 691
+KI +AYQMLKKQGI+K DPKLP D P P P PK+ IF+ DEEKSK+L RLLKS+HPE
Sbjct: 130 VKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFE-DEEKSKMLARLLKSSHPE 188
Query: 692 DLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEAL 871
DL+AAN+LIK + +VK+L EM+ + + G A E L
Sbjct: 189 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDL 248
Query: 872 -QVVYERCEKLRPTLFRLASXXXXXXXAL 955
+ +Y+RCE++RPTLFRLAS AL
Sbjct: 249 MKELYQRCERMRPTLFRLASDTEDNDEAL 277
>ref|NP_001166159.1| ADP-ribosylation factor-binding protein GGA1 isoform 5 [Homo
sapiens].
Length = 566
Score = 254 bits (650), Expect = 1e-67
Identities = 146/296 (49%), Positives = 185/296 (62%), Gaps = 14/296 (4%)
Frame = +2
Query: 353 CGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDIKIRDAY 532
CG++FH EV KFRFLNELIKV+SPKYLGS T+EKVK +I+E+LYSWTV PE++KI +AY
Sbjct: 4 CGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAY 63
Query: 533 QMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPEDLQAANR 712
QMLKKQGI+K DPKLP D P P P PK+ IF+ DEEKSK+L RLLKS+HPEDL+AAN+
Sbjct: 64 QMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFE-DEEKSKMLARLLKSSHPEDLRAANK 122
Query: 713 LIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEAL-QVVYER 889
LIK + +VK+L EM+ + + G A E L + +Y+R
Sbjct: 123 LIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQR 182
Query: 890 CEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTAVSSVEDT 1069
CE++RPTLFRLAS ALAEILQAND LTQ + LYKQ+V G G S+
Sbjct: 183 CERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSI--- 239
Query: 1070 PVSRGCTKNCPLIDL-------------EGDSGSAQAGVATPSLLHQDLAALGISD 1198
P S + +DL G+ S + A+ SLL +L +LG+SD
Sbjct: 240 PGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSD 295
>ref|NP_054720.1| ADP-ribosylation factor-binding protein GGA3 isoform short [Homo
sapiens].
Length = 690
Score = 242 bits (617), Expect = 7e-64
Identities = 138/338 (40%), Positives = 197/338 (58%), Gaps = 2/338 (0%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE WLNKAT+PS ++DW I FCDQ+N + GP LLAHKIQSPQE EAL ALT
Sbjct: 9 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALT- 67
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
YLG +EKVK ++IE+LYSWT+ PE+
Sbjct: 68 --------------------------------YLGDRVSEKVKTKVIELLYSWTMALPEE 95
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDK-ILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
KI+DAY MLK+QGI++ DP +PVD+ ++P P P PK+ +FD DEEKSKLL +LLKS +P
Sbjct: 96 AKIKDAYHMLKRQGIVQSDPPIPVDRTLIPSPPPRPKNPVFD-DEEKSKLLAKLLKSKNP 154
Query: 689 EDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEA 868
+DLQ AN+LIK++ +V++L EML Y + + D+E
Sbjct: 155 DDLQEANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDREL 214
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
++ ++++CE R TLF+LAS +L +ILQA+D L++ + YK ++EG+V G A
Sbjct: 215 MKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGEVA 274
Query: 1049 VSSVEDTPVSRGCTKNCPLIDL-EGDSGSAQAGVATPS 1159
++ D+ + C+ LIDL E D+ ++ + V P+
Sbjct: 275 TLTLPDSEGNSQCSNQGTLIDLAELDTTNSLSSVLAPA 312
>ref|NP_001166174.1| ADP-ribosylation factor-binding protein GGA3 isoform 1 [Homo
sapiens].
Length = 651
Score = 231 bits (590), Expect = 1e-60
Identities = 121/274 (44%), Positives = 180/274 (65%), Gaps = 2/274 (0%)
Frame = +2
Query: 344 VNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDIKIR 523
+ +CG +FH+EV KFRFLNELIKV+SPKYLG +EKVK ++IE+LYSWT+ PE+ KI+
Sbjct: 1 MKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIK 60
Query: 524 DAYQMLKKQGIIKQDPKLPVDK-ILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPEDLQ 700
DAY MLK+QGI++ DP +PVD+ ++P P P PK+ +FD DEEKSKLL +LLKS +P+DLQ
Sbjct: 61 DAYHMLKRQGIVQSDPPIPVDRTLIPSPPPRPKNPVFD-DEEKSKLLAKLLKSKNPDDLQ 119
Query: 701 AANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEALQVV 880
AN+LIK++ +V++L EML Y + + D+E ++ +
Sbjct: 120 EANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKEL 179
Query: 881 YERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTAVSSV 1060
+++CE R TLF+LAS +L +ILQA+D L++ + YK ++EG+V G A ++
Sbjct: 180 FDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGEVATLTL 239
Query: 1061 EDTPVSRGCTKNCPLIDL-EGDSGSAQAGVATPS 1159
D+ + C+ LIDL E D+ ++ + V P+
Sbjct: 240 PDSEGNSQCSNQGTLIDLAELDTTNSLSSVLAPA 273
>ref|NP_001166175.1| ADP-ribosylation factor-binding protein GGA3 isoform 2 [Homo
sapiens].
Length = 592
Score = 158 bits (399), Expect = 1e-38
Identities = 87/221 (39%), Positives = 136/221 (61%), Gaps = 2/221 (0%)
Frame = +2
Query: 503 PEDIKIRDAYQMLKKQGIIKQDPKLPVDK-ILPPPSPWPKSSIFDADEEKSKLLTRLLKS 679
PE+ KI+DAY MLK+QGI++ DP +PVD+ ++P P P PK+ +FD DEEKSKLL +LLKS
Sbjct: 4 PEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLIPSPPPRPKNPVFD-DEEKSKLLAKLLKS 62
Query: 680 NHPEDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPD 859
+P+DLQ AN+LIK++ +V++L EML Y + + D
Sbjct: 63 KNPDDLQEANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGD 122
Query: 860 QEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFG 1039
+E ++ ++++CE R TLF+LAS +L +ILQA+D L++ + YK ++EG+V G
Sbjct: 123 RELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVING 182
Query: 1040 STAVSSVEDTPVSRGCTKNCPLIDL-EGDSGSAQAGVATPS 1159
A ++ D+ + C+ LIDL E D+ ++ + V P+
Sbjct: 183 EVATLTLPDSEGNSQCSNQGTLIDLAELDTTNSLSSVLAPA 223
>ref|NP_001076437.1| TOM1-like protein 2 isoform 3 [Homo sapiens].
Length = 507
Score = 84.0 bits (206), Expect = 3e-16
Identities = 88/375 (23%), Positives = 151/375 (40%), Gaps = 17/375 (4%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
L KATD S+ +DW+ CD +N GP L ++ + +E + ALTVLE
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F++ L+K++SPK + V+ +++ ++ +W F P+
Sbjct: 77 CVKNCGHRFHILVANRDFIDSVLVKIISPK---NNPPTIVQDKVLALIQAWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDAD--------EEKSKLLT 664
+ Y+ LK++G+ + P +D + P + P+ S+ + D + + +
Sbjct: 134 LTGVVHIYEELKRKGV--EFPMADLDALSPIHT--PQRSVPEVDPAATMPRSQSQQRTSA 189
Query: 665 RLLKSNHPEDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPG 844
S P A ++ + KV+ EML+
Sbjct: 190 GSYSSPPPAPYSAPQAPALSVTGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQ 249
Query: 845 QAPPDQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEG 1024
+ D E LQ + C ++ + L S E+L ND L L Y++
Sbjct: 250 EDSSDLELLQELNRTCRAMQQRIVELIS-RVSNEEVTEELLHVNDDLNNVFLRYERFERY 308
Query: 1025 RVTFGSTAVSSVEDTPVSRGCTKNCPLIDLEGDSGSAQA----GVATPSLLHQDLAALGI 1192
R +V + + ++ N LIDL S + + A PS L LA L +
Sbjct: 309 R---SGRSVQNASNGVLNEVTEDN--LIDLGPGSPAVVSPMVGNTAPPSSLSSQLAGLDL 363
Query: 1193 SDAPVTNKAAGQHCC 1237
V+ + C
Sbjct: 364 GTESVSGTLSSLQQC 378
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,642,487
Number of extensions: 1935173
Number of successful extensions: 8522
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 8430
Number of HSP's successfully gapped: 19
Length of query: 496
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 389
Effective length of database: 14,770,016
Effective search space: 5745536224
Effective search space used: 5745536224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004450
(1489 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083034.1| ADP-ribosylation factor-binding protein GGA2 [M... 642 0.0
Alignment gi|NP_666041.1| ADP-ribosylation factor-binding protein GGA1 [M... 329 4e-90
Alignment gi|NP_766636.2| ADP-ribosylation factor-binding protein GGA3 [M... 309 4e-84
Alignment gi|NP_001034182.1| TOM1-like protein 2 isoform c [Mus musculus]. 85 2e-16
Alignment gi|NP_694720.2| TOM1-like protein 2 isoform a [Mus musculus]. 85 2e-16
Alignment gi|NP_001034181.1| TOM1-like protein 2 isoform b [Mus musculus]. 85 2e-16
Alignment gi|NP_001129731.1| target of Myb protein 1 isoform 2 [Mus muscu... 73 5e-13
Alignment gi|NP_035752.1| target of Myb protein 1 isoform 1 [Mus musculus]. 73 5e-13
Alignment gi|NP_001152800.1| hepatocyte growth factor-regulated tyrosine ... 66 6e-11
Alignment gi|NP_032270.3| hepatocyte growth factor-regulated tyrosine kin... 66 6e-11
>ref|NP_083034.1| ADP-ribosylation factor-binding protein GGA2 [Mus musculus].
Length = 603
Score = 642 bits (1657), Expect = 0.0
Identities = 327/438 (74%), Positives = 353/438 (80%), Gaps = 6/438 (1%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LELWLNKATDPSM+EQDWSAIQ FC+QVNTDP+GPTH PWLLAHKIQSPQEKEALYALTV
Sbjct: 29 LELWLNKATDPSMAEQDWSAIQKFCEQVNTDPSGPTHAPWLLAHKIQSPQEKEALYALTV 88
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE+C+NHCGEKFHSEVAKFRFLNELIKVLSPKYLG+W TEKVKGR+IEIL+SWTVWFPED
Sbjct: 89 LEICMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGAWATEKVKGRVIEILFSWTVWFPED 148
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 691
IKIRDAYQMLKKQGIIKQDPKLP+DKILPPPSPWPK SIFDADEEKSKLLTRLLKSNHPE
Sbjct: 149 IKIRDAYQMLKKQGIIKQDPKLPMDKILPPPSPWPK-SIFDADEEKSKLLTRLLKSNHPE 207
Query: 692 DLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEAL 871
DLQAANRLIKNL HV+VL+EMLS YRRPG A PDQ+AL
Sbjct: 208 DLQAANRLIKNLVKEEQEKSEKVSRRVSAVEEVRSHVRVLREMLSMYRRPGHALPDQQAL 267
Query: 872 QVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTAV 1051
QVVYERCEKLRPTLFRLAS ALAEILQANDLLTQGV LYKQVVEGRV+ G+
Sbjct: 268 QVVYERCEKLRPTLFRLASDTTDDDDALAEILQANDLLTQGVRLYKQVVEGRVSAGNAVP 327
Query: 1052 SSVEDTPVSRG------CTKNCPLIDLEGDSGSAQAGVATPSLLHQDLAALGISDAPVTN 1213
++V P R C NCPLIDLE TPSLLHQDLAALGI+D P N
Sbjct: 328 AAVGAIPAPRAFPNPEPCGLNCPLIDLE-----------TPSLLHQDLAALGINDVPTRN 376
Query: 1214 KAAGQHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGPLNYIPQKSIPKEVPP 1393
+ CC ++K P A T +GG ++S SA+RNLLDL SPQP PG LNY+PQKSIPKEVPP
Sbjct: 377 QVVIPSCCNDKKQPGAITLMGGGIQSLSADRNLLDLFSPQPSPG-LNYVPQKSIPKEVPP 435
Query: 1394 GTKSSPGWSWEAGPLASS 1447
GTK+SPGWSWEAGPLASS
Sbjct: 436 GTKASPGWSWEAGPLASS 453
>ref|NP_666041.1| ADP-ribosylation factor-binding protein GGA1 [Mus musculus].
Length = 635
Score = 329 bits (843), Expect = 4e-90
Identities = 190/416 (45%), Positives = 251/416 (60%), Gaps = 17/416 (4%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE +N+AT+P E +W++I +FC+Q+N D GP LLAHKIQSPQE EA+ ALTV
Sbjct: 10 LEARINRATNPLNKELNWASINSFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTV 69
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ CG++FH EV KFRFLNELIKV+SPKYLGS T+EKVK +I+E+LYSWTV PE+
Sbjct: 70 LETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKSKILELLYSWTVCLPEE 129
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHPE 691
+KI +AYQMLKKQGI+K DPKLP D I P P P PK+ IF+ DEEKSK+L RLLKS+HPE
Sbjct: 130 VKIAEAYQMLKKQGIVKSDPKLPEDAIFPLPPPRPKNVIFE-DEEKSKMLARLLKSSHPE 188
Query: 692 DLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEAL 871
DL+AAN+LIK + +VK+L EM+ + + + ++ +
Sbjct: 189 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGAASSSSEDLM 248
Query: 872 QVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTAV 1051
+ +Y+RCE++RPTLFRLAS ALAEILQAND LTQ + LYKQ+V G G
Sbjct: 249 KELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATA 308
Query: 1052 SSVEDTPVSRGCTKNCPLIDL-------------EGDSGSAQAGVATPSLLHQDLAALGI 1192
SS+ P S + +DL G+ S + A+ SLL +L +LG+
Sbjct: 309 SSI---PGSTSALLDLSGLDLPPPGTTQPATPTRPGNQSSPEQLSASVSLLDDELMSLGL 365
Query: 1193 SD----APVTNKAAGQHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGP 1348
SD + ++ + G Q +S P P A+ +D P P P
Sbjct: 366 SDPTPPSGTSSDSVGWDNFQSSDGTESSVP-------PPAQAPSMDCRPPAQAPPP 414
>ref|NP_766636.2| ADP-ribosylation factor-binding protein GGA3 [Mus musculus].
Length = 718
Score = 309 bits (791), Expect = 4e-84
Identities = 176/429 (41%), Positives = 247/429 (57%), Gaps = 20/429 (4%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE WLNKAT+PS ++DW I FCDQ+N + GP LLAHKIQSPQE EA+ ALTV
Sbjct: 9 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEAVQALTV 68
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ +CG + H+EV KFRFLNELIKV+SPKYLG +EKVK ++IE+L+SWT+ PE+
Sbjct: 69 LEACMKNCGRRLHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLFSWTLALPEE 128
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDK-ILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
KI+DAY MLK+QGI++ DP +P+D+ ++P P P PK+ +FD DEEKSKLL RLLKS +P
Sbjct: 129 AKIKDAYHMLKRQGIVQSDPPIPMDRTLIPSPPPRPKNPVFD-DEEKSKLLARLLKSKNP 187
Query: 689 EDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEA 868
+DLQ ANRLIK++ +VK+L EML Y + + D+E
Sbjct: 188 DDLQEANRLIKSMVKEDEARIQKVTKRLHTLEEVNNNVKLLHEMLLHYSQEYSSDADKEL 247
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
++ +++RCE R TLF+LAS +L +ILQA+D L++ + YK ++EG++ G
Sbjct: 248 MKELFDRCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQIVNGEVT 307
Query: 1049 VSSVEDTPVSRGCTKNCPLIDL-EGDSGSAQAGVATPSLLHQDLAALGISDAPVTNKAAG 1225
S++ D+ + C LIDL E D+ S ++P+L + P T+
Sbjct: 308 TSTMPDSEGNSHCGNQGALIDLAELDAPSN----SSPALAPPTSGIPILPPPPQTSGPPR 363
Query: 1226 QHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQP------------------PPGPL 1351
+ + P S A+ E L L P P PP L
Sbjct: 364 SRSSSQAEAPPGSDSTNNALSLLDEELLCLGLTDPAPTAPKESPGSSQWHLFQNEPPSDL 423
Query: 1352 NYIPQKSIP 1378
++ + +P
Sbjct: 424 DFFSPRPVP 432
>ref|NP_001034182.1| TOM1-like protein 2 isoform c [Mus musculus].
Length = 440
Score = 84.7 bits (208), Expect = 2e-16
Identities = 87/376 (23%), Positives = 149/376 (39%), Gaps = 15/376 (3%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
L KATD S+ +DW+ CD +N GP L ++ + +E + ALTVLE
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F++ L+K++SPK + V+ +++ ++ +W F P+
Sbjct: 77 CVKNCGHRFHLLVANRDFIDSVLVKIISPK---NNPPTIVQDKVLALIQAWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSP------WPKSSIFDADEEKSKLLTRL 670
+ Y+ LK++GI + P +D + P +P ++ + + +
Sbjct: 134 LTGVVHIYEELKRRGI--EFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGT 191
Query: 671 LKSNHPEDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQA 850
S P ++ + KV+ EML+ +
Sbjct: 192 YSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQED 251
Query: 851 PPDQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRV 1030
D E LQ + C ++ + L S E+L ND L L Y++ R
Sbjct: 252 SSDLELLQELNRTCRAMQHRIVELIS-RVSNEEVTEELLHVNDDLNNVFLRYERFERYR- 309
Query: 1031 TFGSTAVSSVEDTPVSRGCTKNCPLIDLEGDSGSAQA----GVATPSLLHQDLAALGISD 1198
+V + + +S N LIDL S + + A PS L LA L +
Sbjct: 310 --SGRSVQNASNGVLSEVTEDN--LIDLGPGSPAVVSPMVGSTAPPSSLSSQLAGLDLGT 365
Query: 1199 APVTNKAAGQHCCQEE 1246
V+ + C+ +
Sbjct: 366 ESVSGTLSSLQQCKPQ 381
>ref|NP_694720.2| TOM1-like protein 2 isoform a [Mus musculus].
Length = 507
Score = 84.7 bits (208), Expect = 2e-16
Identities = 87/376 (23%), Positives = 149/376 (39%), Gaps = 15/376 (3%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
L KATD S+ +DW+ CD +N GP L ++ + +E + ALTVLE
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F++ L+K++SPK + V+ +++ ++ +W F P+
Sbjct: 77 CVKNCGHRFHLLVANRDFIDSVLVKIISPK---NNPPTIVQDKVLALIQAWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSP------WPKSSIFDADEEKSKLLTRL 670
+ Y+ LK++GI + P +D + P +P ++ + + +
Sbjct: 134 LTGVVHIYEELKRRGI--EFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGT 191
Query: 671 LKSNHPEDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQA 850
S P ++ + KV+ EML+ +
Sbjct: 192 YSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQED 251
Query: 851 PPDQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRV 1030
D E LQ + C ++ + L S E+L ND L L Y++ R
Sbjct: 252 SSDLELLQELNRTCRAMQHRIVELIS-RVSNEEVTEELLHVNDDLNNVFLRYERFERYR- 309
Query: 1031 TFGSTAVSSVEDTPVSRGCTKNCPLIDLEGDSGSAQA----GVATPSLLHQDLAALGISD 1198
+V + + +S N LIDL S + + A PS L LA L +
Sbjct: 310 --SGRSVQNASNGVLSEVTEDN--LIDLGPGSPAVVSPMVGSTAPPSSLSSQLAGLDLGT 365
Query: 1199 APVTNKAAGQHCCQEE 1246
V+ + C+ +
Sbjct: 366 ESVSGTLSSLQQCKPQ 381
>ref|NP_001034181.1| TOM1-like protein 2 isoform b [Mus musculus].
Length = 487
Score = 84.7 bits (208), Expect = 2e-16
Identities = 87/376 (23%), Positives = 149/376 (39%), Gaps = 15/376 (3%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
L KATD S+ +DW+ CD +N GP L ++ + +E + ALTVLE
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F++ L+K++SPK + V+ +++ ++ +W F P+
Sbjct: 77 CVKNCGHRFHLLVANRDFIDSVLVKIISPK---NNPPTIVQDKVLALIQAWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSP------WPKSSIFDADEEKSKLLTRL 670
+ Y+ LK++GI + P +D + P +P ++ + + +
Sbjct: 134 LTGVVHIYEELKRRGI--EFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGT 191
Query: 671 LKSNHPEDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQA 850
S P ++ + KV+ EML+ +
Sbjct: 192 YSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQED 251
Query: 851 PPDQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRV 1030
D E LQ + C ++ + L S E+L ND L L Y++ R
Sbjct: 252 SSDLELLQELNRTCRAMQHRIVELIS-RVSNEEVTEELLHVNDDLNNVFLRYERFERYR- 309
Query: 1031 TFGSTAVSSVEDTPVSRGCTKNCPLIDLEGDSGSAQA----GVATPSLLHQDLAALGISD 1198
+V + + +S N LIDL S + + A PS L LA L +
Sbjct: 310 --SGRSVQNASNGVLSEVTEDN--LIDLGPGSPAVVSPMVGSTAPPSSLSSQLAGLDLGT 365
Query: 1199 APVTNKAAGQHCCQEE 1246
V+ + C+ +
Sbjct: 366 ESVSGTLSSLQQCKPQ 381
>ref|NP_001129731.1| target of Myb protein 1 isoform 2 [Mus musculus].
Length = 516
Score = 73.2 bits (178), Expect = 5e-13
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 9/309 (2%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
+ KATD S+ +DW+ CD +N GP + +I + E + ALTVLE
Sbjct: 17 IEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFL-NELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F+ N L++ + PK + V +++ ++ SW F P+
Sbjct: 77 CVKNCGHRFHVLVANQDFVENVLVRTILPK---NNPPTIVHDKVLNLIQSWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
+ Y+ L+++G+ + P +D + P + P+ ++F+++ + S
Sbjct: 134 LTGVVAVYEDLRRKGL--EFPMTDLDMLSPIHT--PQRTVFNSETPSRQNSVSSNTSQRG 189
Query: 689 EDLQAANRL----IKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPP 856
+ Q A L + +V+V+ EML+ P
Sbjct: 190 DLSQHATPLPTPAVLPGDSPITPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQVEPA 249
Query: 857 DQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTF 1036
D E LQ + C ++ + L E+L ND L L +++ R
Sbjct: 250 DLELLQELNRTCRAMQQRILELIPRISNEQLT-EELLMINDNLNNVFLRHERFERFRT-- 306
Query: 1037 GSTAVSSVE 1063
G TA +S E
Sbjct: 307 GQTAKASSE 315
>ref|NP_035752.1| target of Myb protein 1 isoform 1 [Mus musculus].
Length = 492
Score = 73.2 bits (178), Expect = 5e-13
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 9/309 (2%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQE-KEALYALTVLEM 340
+ KATD S+ +DW+ CD +N GP + +I + E + ALTVLE
Sbjct: 17 IEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLET 76
Query: 341 CVNHCGEKFHSEVAKFRFL-NELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWF---PE 508
CV +CG +FH VA F+ N L++ + PK + V +++ ++ SW F P+
Sbjct: 77 CVKNCGHRFHVLVANQDFVENVLVRTILPK---NNPPTIVHDKVLNLIQSWADAFRSSPD 133
Query: 509 DIKIRDAYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
+ Y+ L+++G+ + P +D + P + P+ ++F+++ + S
Sbjct: 134 LTGVVAVYEDLRRKGL--EFPMTDLDMLSPIHT--PQRTVFNSETPSRQNSVSSNTSQRG 189
Query: 689 EDLQAANRL----IKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPP 856
+ Q A L + +V+V+ EML+ P
Sbjct: 190 DLSQHATPLPTPAVLPGDSPITPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQVEPA 249
Query: 857 DQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTF 1036
D E LQ + C ++ + L E+L ND L L +++ R
Sbjct: 250 DLELLQELNRTCRAMQQRILELIPRISNEQLT-EELLMINDNLNNVFLRHERFERFRT-- 306
Query: 1037 GSTAVSSVE 1063
G TA +S E
Sbjct: 307 GQTAKASSE 315
>ref|NP_001152800.1| hepatocyte growth factor-regulated tyrosine kinase substrate
isoform 1 [Mus musculus].
Length = 776
Score = 66.2 bits (160), Expect = 6e-11
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Frame = +2
Query: 155 ELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTVL 334
E L+KAT + E DW +I CD + + + K+ ALYAL V+
Sbjct: 9 ERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVM 68
Query: 335 EMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDI 514
E V +CG+ H EVA + + EL ++L + V+ +I+ ++ +W F +
Sbjct: 69 ESVVKNCGQTVHDEVANKQTMEELKELLKRQ-----VEVNVRNKILYLIQAWAHAFRNEP 123
Query: 515 K---IRDAYQMLKKQG 553
K ++D YQ++K +G
Sbjct: 124 KYKVVQDTYQIMKVEG 139
>ref|NP_032270.3| hepatocyte growth factor-regulated tyrosine kinase substrate
isoform 2 [Mus musculus].
Length = 775
Score = 66.2 bits (160), Expect = 6e-11
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Frame = +2
Query: 155 ELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTVL 334
E L+KAT + E DW +I CD + + + K+ ALYAL V+
Sbjct: 9 ERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVM 68
Query: 335 EMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDI 514
E V +CG+ H EVA + + EL ++L + V+ +I+ ++ +W F +
Sbjct: 69 ESVVKNCGQTVHDEVANKQTMEELKELLKRQ-----VEVNVRNKILYLIQAWAHAFRNEP 123
Query: 515 K---IRDAYQMLKKQG 553
K ++D YQ++K +G
Sbjct: 124 KYKVVQDTYQIMKVEG 139
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,825,453
Number of extensions: 1610179
Number of successful extensions: 6968
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6883
Number of HSP's successfully gapped: 12
Length of query: 496
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 391
Effective length of database: 12,463,779
Effective search space: 4873337589
Effective search space used: 4873337589
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004450
(1489 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131257.1| PREDICTED: ADP-ribosylation factor-binding p... 310 1e-84
Alignment gi|XP_003131258.1| PREDICTED: ADP-ribosylation factor-binding p... 241 8e-64
Alignment gi|XP_003355399.1| PREDICTED: ADP-ribosylation factor-binding p... 214 1e-55
Alignment gi|XP_003358157.1| PREDICTED: TOM1-like protein 1 [Sus scrofa]. 80 3e-15
Alignment gi|XP_001927044.3| PREDICTED: signal transducing adapter molecu... 64 3e-10
Alignment gi|XP_003361358.1| PREDICTED: signal transducing adapter molecu... 62 8e-10
>ref|XP_003131257.1| PREDICTED: ADP-ribosylation factor-binding protein GGA3 isoform 1
[Sus scrofa].
Length = 719
Score = 310 bits (794), Expect = 1e-84
Identities = 176/403 (43%), Positives = 238/403 (59%), Gaps = 4/403 (0%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE WLNKAT+PS ++DW I FCDQ+N + GP LLAHKIQSPQE EA+ ALTV
Sbjct: 9 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEAVQALTV 68
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
LE C+ +CG +FH+EV KFRFLNELIKV+SPKYLG +EKVK ++IE+LYSWT+ E+
Sbjct: 69 LEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTLALAEE 128
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDK-ILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
KI+DAY MLK+QGI++ DP LPVD+ ++P P P PK+ +FD DEEKSKLL +LLKS +P
Sbjct: 129 SKIKDAYHMLKRQGIVQSDPLLPVDRTLIPSPPPRPKNPVFD-DEEKSKLLAKLLKSKNP 187
Query: 689 EDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEA 868
+DLQ AN+LIK++ +VK+L EML Y + + D+E
Sbjct: 188 DDLQEANKLIKSMVKEDEARIQKVTKRLHTLEEVSNNVKLLSEMLLHYSQEDSSEADKEL 247
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
++ +++RCE R LF+LAS L +ILQA+D L++ + YK VVEG+V G A
Sbjct: 248 MKELFDRCENKRRALFKLASETEDNDNTLGDILQASDNLSRVINSYKTVVEGQVINGEVA 307
Query: 1049 VSSVEDTPVSRGCTKNCPLIDL---EGDSGSAQAGVATPSLLHQDLAALGISDAPVTNKA 1219
S++ D+ + T LIDL + S S+ A +A S+ + P +
Sbjct: 308 TSALPDSEGNNPSTHQATLIDLAESDAPSSSSPAPLAPTSI-------PTLPPPPQASAP 360
Query: 1220 AGQHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGP 1348
H + + P A+ E L L P P P
Sbjct: 361 GRSHLSSQAEVPPGPNSTSPALCLLDEELLCLGLTDPAPTAPP 403
>ref|XP_003131258.1| PREDICTED: ADP-ribosylation factor-binding protein GGA3 isoform 2
[Sus scrofa].
Length = 686
Score = 241 bits (615), Expect = 8e-64
Identities = 152/403 (37%), Positives = 209/403 (51%), Gaps = 4/403 (0%)
Frame = +2
Query: 152 LELWLNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTV 331
LE WLNKAT+PS ++DW I FCDQ+N + GP LLAHKIQSPQE EA+ ALT
Sbjct: 9 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEAVQALT- 67
Query: 332 LEMCVNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPED 511
YLG +EKVK ++IE+LYSWT+ E+
Sbjct: 68 --------------------------------YLGDRVSEKVKTKVIELLYSWTLALAEE 95
Query: 512 IKIRDAYQMLKKQGIIKQDPKLPVDK-ILPPPSPWPKSSIFDADEEKSKLLTRLLKSNHP 688
KI+DAY MLK+QGI++ DP LPVD+ ++P P P PK+ +FD DEEKSKLL +LLKS +P
Sbjct: 96 SKIKDAYHMLKRQGIVQSDPLLPVDRTLIPSPPPRPKNPVFD-DEEKSKLLAKLLKSKNP 154
Query: 689 EDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPGQAPPDQEA 868
+DLQ AN+LIK++ +VK+L EML Y + + D+E
Sbjct: 155 DDLQEANKLIKSMVKEDEARIQKVTKRLHTLEEVSNNVKLLSEMLLHYSQEDSSEADKEL 214
Query: 869 LQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEGRVTFGSTA 1048
++ +++RCE R LF+LAS L +ILQA+D L++ + YK VVEG+V G A
Sbjct: 215 MKELFDRCENKRRALFKLASETEDNDNTLGDILQASDNLSRVINSYKTVVEGQVINGEVA 274
Query: 1049 VSSVEDTPVSRGCTKNCPLIDL---EGDSGSAQAGVATPSLLHQDLAALGISDAPVTNKA 1219
S++ D+ + T LIDL + S S+ A +A S+ + P +
Sbjct: 275 TSALPDSEGNNPSTHQATLIDLAESDAPSSSSPAPLAPTSI-------PTLPPPPQASAP 327
Query: 1220 AGQHCCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQPPPGP 1348
H + + P A+ E L L P P P
Sbjct: 328 GRSHLSSQAEVPPGPNSTSPALCLLDEELLCLGLTDPAPTAPP 370
>ref|XP_003355399.1| PREDICTED: ADP-ribosylation factor-binding protein GGA1-like [Sus
scrofa].
Length = 196
Score = 214 bits (544), Expect = 1e-55
Identities = 105/163 (64%), Positives = 128/163 (78%)
Frame = +2
Query: 167 NKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTVLEMCV 346
++AT+P E +W++I FC+Q+N D GP LLAHKIQSPQE EA+ ALTVLE C+
Sbjct: 23 DRATNPLNKELNWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCM 82
Query: 347 NHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDIKIRD 526
CG++FH EV KFRFLNELIKV+SPKYLGS T+EKVK +I+E+LYSWTV PE++KI +
Sbjct: 83 KSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAE 142
Query: 527 AYQMLKKQGIIKQDPKLPVDKILPPPSPWPKSSIFDADEEKSK 655
AYQMLKKQGI+K DPKLP D LP P P PK+ IF+ DEEKSK
Sbjct: 143 AYQMLKKQGIVKADPKLPDDAALPLPPPRPKNVIFE-DEEKSK 184
>ref|XP_003358157.1| PREDICTED: TOM1-like protein 1 [Sus scrofa].
Length = 632
Score = 80.1 bits (196), Expect = 3e-15
Identities = 91/413 (22%), Positives = 165/413 (39%), Gaps = 22/413 (5%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKI-QSPQEKEALYALTVLEM 340
+ KAT + +DW + CD +NT +GP L +I ++ KE L++++M
Sbjct: 19 IEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDM 78
Query: 341 CVNHCGEKFHSEVAKFRFLNE-LIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDI- 514
CV +CG +FHS + K F+ + L K+L+P+Y ++ RI+ + +W+ FP +
Sbjct: 79 CVQNCGPRFHSLIVKKEFVKDSLAKLLNPRYT---LPVDIQNRILSFIKTWSQGFPGGVD 135
Query: 515 --KIRDAYQMLKKQGI-------IKQDPKLPVDKILP-PPSPWPKSSIFDADEEKSKLLT 664
++++ Y L K+G+ + + + +I P PP P + K+ +T
Sbjct: 136 VSEVKEVYLDLLKKGVQFPLSQAEAETARQEIAQISPNPPPSVPTAPALSCVVPKNATIT 195
Query: 665 RLLKSNHPEDLQAANRLIKNLXXXXXXXXXXXXXXXXXXXXXXXHVKVLQEMLSRYRRPG 844
+ PE + +L L +VKV+ +L
Sbjct: 196 LV-----PEQI---GKLHSEL------------------DMVKMNVKVMSAILMENIPGS 229
Query: 845 QAPPDQEALQVVYERCEKLRPTLFRLASXXXXXXXALAEILQANDLLTQGVLLYKQVVEG 1024
+ D E LQ +Y+ +++ + L E++Q N+ L +L ++
Sbjct: 230 ENREDIELLQKLYKTGREMQERIMDLL-VVVENEDVTVELIQVNEDLNNAILGCERFTRN 288
Query: 1025 RVTFGSTAVSSVEDTPVSRGCTKNCPLIDLEGDSGSAQAGVATPSLLHQDLAALGISD-A 1201
+ S ED S + L+DL +A + + L+ L+ L S +
Sbjct: 289 QQRILEQNKSQREDANTSEPSAPSSDLLDLSPSPLMHRATLGEFNTLNAQLSDLNFSSPS 348
Query: 1202 PV--TNKAAGQH------CCQEEKTPIASTPLGGAVRSPSAERNLLDLLSPQP 1336
PV N H + +TP+ + S A N L+ L QP
Sbjct: 349 PVVTNNLKPSLHPQVDLLASENTETPLFAQRTSHNFASSHAYENALNYLGIQP 401
>ref|XP_001927044.3| PREDICTED: signal transducing adapter molecule 2, partial [Sus
scrofa].
Length = 512
Score = 63.5 bits (153), Expect = 3e-10
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Frame = +2
Query: 170 KATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTVLEMCVN 349
KAT+ + +DWS I + CD+V + PNG + ++ AL ALT+L CV
Sbjct: 1 KATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVA 60
Query: 350 HCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDIK---I 520
+CG+ FH EV F E+ V+ K KV ++ ++ W+ F +D + I
Sbjct: 61 NCGKIFHLEVCSRDFATEVRAVIKNK-----AHPKVCEKLKSLMVEWSEEFQKDPQFSLI 115
Query: 521 RDAYQMLKKQGI 556
+ +K++GI
Sbjct: 116 SATIKSMKEEGI 127
>ref|XP_003361358.1| PREDICTED: signal transducing adapter molecule 1-like, partial [Sus
scrofa].
Length = 536
Score = 62.0 bits (149), Expect = 8e-10
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Frame = +2
Query: 164 LNKATDPSMSEQDWSAIQNFCDQVNTDPNGPTHTPWLLAHKIQSPQEKEALYALTVLEMC 343
+ KAT + +DW I + CD+V GP + ++ A+ ALT+L C
Sbjct: 13 VEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSVMRRVNHKDPHVAMQALTLLGAC 72
Query: 344 VNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWTTEKVKGRIIEILYSWTVWFPEDIK-- 517
V++CG+ FH EV F +E+ VL+ + EK+K ++E WT F D +
Sbjct: 73 VSNCGKIFHLEVCSRDFASEVSNVLNKGH--PKVCEKLKALMVE----WTDEFKNDPQLS 126
Query: 518 -IRDAYQMLKKQGI 556
I + LK+QG+
Sbjct: 127 LISAMIKNLKEQGV 140
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,079,405
Number of extensions: 1495705
Number of successful extensions: 5549
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5503
Number of HSP's successfully gapped: 6
Length of query: 496
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 393
Effective length of database: 8,779,541
Effective search space: 3450359613
Effective search space used: 3450359613
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004450
(1489 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 281 5e-73
>Sscrofa_Chr10
|| Length = 79102373
Score = 281 bits (142), Expect = 5e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 735 aggaacaggagaaatcagaaaaggtgtccaagagggtgagcgccgtggaggaagtacgga 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147090 aggaacaggagaaatcagaaaaggtgtccaagagggtgagcgccgtggaggaagtacgga 147149
Query: 795 gccacgtgaaggtgctgcaggaaatgctgagcaggtaccgcaggccaggccaggccccgc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147150 gccacgtgaaggtgctgcaggaaatgctgagcaggtaccgcaggccaggccaggccccgc 147209
Query: 855 ccgaccaggaggccttgcaggt 876
||||||||||||||||||||||
Sbjct: 147210 ccgaccaggaggccttgcaggt 147231
Score = 258 bits (130), Expect = 8e-66
Identities = 137/138 (99%), Gaps = 1/138 (0%)
Strand = Plus / Plus
Query: 1351 gaattatattccacaaaaaagtatccccaaggaagtgccaccagggactaagtcctctcc 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159064 gaattatattccacaaaaaagtatccccaaggaagtgccaccagggactaagtcctctcc 159123
Query: 1411 aggttggtcctgggaggctggtccgttggcttctt-cccatcgtcccagaatacacctct 1469
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 159124 aggttggtcctgggaggctggtccgttggcttcttccccatcgtcccagaatacacctct 159183
Query: 1470 ggctcacgtgtttgtccc 1487
||||||||||||||||||
Sbjct: 159184 ggctcacgtgtttgtccc 159201
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 956 gcggagattctccaggcaaatgacctcctcacccagggagtcctgctgtacaaacaggtg 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154813 gcggagattctccaggcaaatgacctcctcacccagggagtcctgctgtacaaacaggtg 154872
Query: 1016 gtagagggccgtgtcacctttgggagcaccgcggtcagctctgtggaagacacacctgtc 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154873 gtagagggccgtgtcacctttgggagcaccgcggtcagctctgtggaagacacacctgtc 154932
Query: 1076 tccagagg 1083
||||||||
Sbjct: 154933 tccagagg 154940
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 426 agtacctgggctcctggaccacagaaaaagttaaaggaagaatcattgaaatactctaca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143543 agtacctgggctcctggaccacagaaaaagttaaaggaagaatcattgaaatactctaca 143602
Query: 486 gttggaccgtctggtttcccgaagacatcaagatccgggatgcttatcagatgctgaaga 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143603 gttggaccgtctggtttcccgaagacatcaagatccgggatgcttatcagatgctgaaga 143662
Query: 546 agcaagg 552
|||||||
Sbjct: 143663 agcaagg 143669
Score = 232 bits (117), Expect = 4e-58
Identities = 132/137 (96%)
Strand = Plus / Plus
Query: 1215 aggctgccgggcagcactgctgtcaggaagagaagacccccatcgccagcacaccgctag 1274
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 156840 aggctgccgggcagcactgctgtcaggaagagaagacccccaccgccagcacaccgccag 156899
Query: 1275 gtggtgctgttcggagcccttctgcagaaaggaacctgctggatctcctctccccacagc 1334
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 156900 gtggtgctgttcggagcccttctgcagaaaggaacctgctggatctactctccccacagc 156959
Query: 1335 cgcctccgggccctctg 1351
|| |||| |||||||||
Sbjct: 156960 cgtctccaggccctctg 156976
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1081 aggctgcacgaagaactgtcccctgattgacctggagggggacagtgggtctgcccaggc 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156013 aggctgcacgaagaactgtcccctgattgacctggagggggacagtgggtctgcccaggc 156072
Query: 1141 tggggtcgccacaccgtctttactgcaccaggacctggcagccttagg 1188
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156073 tggggtcgccacaccgtctttactgcaccaggacctggcagccttagg 156120
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 550 aggaatcataaagcaagaccctaaactaccagtggataagatcttgcccccaccttctcc 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144502 aggaatcataaagcaagaccctaaactaccagtggataagatcttgcccccaccttctcc 144561
Query: 610 ctggcccaagagttccatctttgatgctgacgaagaaaagtccaag 655
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144562 ctggcccaagagttccatctttgatgctgacgaagaaaagtccaag 144607
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 328 ggtcctggagatgtgtgtgaaccactgtggggagaagttccacagcgaggtggccaaatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140756 ggtcctggagatgtgtgtgaaccactgtggggagaagttccacagcgaggtggccaaatt 140815
Query: 388 ccgcttcctgaatgagctcatcaaagtgttgtccccgaag 427
||||||||||||||||||||||||||||||||||||||||
Sbjct: 140816 ccgcttcctgaatgagctcatcaaagtgttgtccccgaag 140855
Score = 168 bits (85), Expect = 6e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 168 ataaagccacagacccaagcatgtcggaacaggattggtcagctatccagaacttctgtg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137102 ataaagccacagacccaagcatgtcggaacaggattggtcagctatccagaacttctgtg 137161
Query: 228 accaagtgaacaccgaccctaatgg 252
|||||||||||||||||||||||||
Sbjct: 137162 accaagtgaacaccgaccctaatgg 137186
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 654 agcttctgacaaggcttctgaaaagcaaccaccctgaggatcttcaggctgcaaaccggc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146469 agcttctgacaaggcttctgaaaagcaaccaccctgaggatcttcaggctgcaaaccggc 146528
Query: 714 tgatcaagaatttggtcaaggagg 737
||||||||||||||||||||||||
Sbjct: 146529 tgatcaagaatttggtcaaggagg 146552
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 873 aggtcgtgtatgagaggtgtgaaaagcttcggcccaccctgttccggctggcaagtgaca 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151635 aggtcgtgtatgagaggtgtgaaaagcttcggcccaccctgttccggctggcaagtgaca 151694
Query: 933 ccaccgacgatgacgacgcactcg 956
||||||||||||||||||||||||
Sbjct: 151695 ccaccgacgatgacgacgcactcg 151718
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 252 gcccaacccacacgccctggctgctggcccacaagatccagtctccacaagagaaagaag 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138861 gcccaacccacacgccctggctgctggcccacaagatccagtctccacaagagaaagaag 138920
Query: 312 ctctttatgccttaacggt 330
|||||||||||||||||||
Sbjct: 138921 ctctttatgccttaacggt 138939
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1186 aggaatcagtgatgccccagtaaccaacaagg 1217
||||||||||||||||||||||||||||||||
Sbjct: 156428 aggaatcagtgatgccccagtaaccaacaagg 156459
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,091,414
Number of extensions: 293
Number of successful extensions: 293
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 13
Length of query: 1489
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1468
Effective length of database: 2,808,413,156
Effective search space: 4122750513008
Effective search space used: 4122750513008
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)