Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004455
(870 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 ... 497 e-154
Alignment gi|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2... 199 3e-51
Alignment gi|XP_002687706.1| PREDICTED: polymerase (RNA) III (DNA directe... 199 3e-51
Alignment gi|NP_001093762.1| DNA-directed RNA polymerase I subunit RPA2 [... 117 1e-26
>ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus].
Length = 1174
Score = 497 bits (1279), Expect(2) = e-154
Identities = 246/257 (95%), Positives = 246/257 (95%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSM YTDAGRICRPLL
Sbjct: 567 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLL 626
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 627 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 686
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 687 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 746
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 747 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 806
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 807 RSVFYRSYKEQESKKGF 823
Score = 66.6 bits (161), Expect(2) = e-154
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 534 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
>ref|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2 [Bos taurus].
Length = 1133
Score = 199 bits (505), Expect = 3e-51
Identities = 104/249 (41%), Positives = 160/249 (64%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
+F+NG +G+ +D ++L+NT R +RR I VS+ +D GR+CRP +
Sbjct: 539 VFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVYISSDGGRLCRPYI 597
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A+ + +
Sbjct: 598 IVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIALYEHTINKDT 654
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N R+DT
Sbjct: 655 -------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
L ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++N++++DRGF
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFG 767
Query: 819 RSVFYRSYK 845
R + Y++ K
Sbjct: 768 RCLVYKNAK 776
>ref|XP_002687706.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide B [Bos
taurus].
Length = 1133
Score = 199 bits (505), Expect = 3e-51
Identities = 104/249 (41%), Positives = 160/249 (64%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
+F+NG +G+ +D ++L+NT R +RR I VS+ +D GR+CRP +
Sbjct: 539 VFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVYISSDGGRLCRPYI 597
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A+ + +
Sbjct: 598 IVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIALYEHTINKDT 654
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N R+DT
Sbjct: 655 -------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
L ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++N++++DRGF
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFG 767
Query: 819 RSVFYRSYK 845
R + Y++ K
Sbjct: 768 RCLVYKNAK 776
>ref|NP_001093762.1| DNA-directed RNA polymerase I subunit RPA2 [Bos taurus].
Length = 1135
Score = 117 bits (293), Expect = 1e-26
Identities = 63/154 (40%), Positives = 87/154 (56%)
Frame = +3
Query: 378 GVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQS 557
G E I T+E+ + +A+ D++ TH E+ P +L V A+ IPF DHNQS
Sbjct: 629 GKEELIGTMEQIFMNVAIFEDEV------LAGVTTHQELFPHSLLSVIANFIPFSDHNQS 682
Query: 558 PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSI 737
PRN YQ MGKQ MG + F R D + L PQ PLV +Y P G N+I
Sbjct: 683 PRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAI 742
Query: 738 VAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 839
VA+ SYTGY+ ED++I+N+++ +RGF Y+S
Sbjct: 743 VAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS 776
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,776,512
Number of extensions: 802305
Number of successful extensions: 2025
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2021
Number of HSP's successfully gapped: 5
Length of query: 290
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 189
Effective length of database: 14,339,486
Effective search space: 2710162854
Effective search space used: 2710162854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004455
(870 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532382.2| PREDICTED: similar to DNA-directed RNA polymera... 497 e-154
Alignment gi|XP_860708.1| PREDICTED: similar to DNA-directed RNA polymera... 497 e-154
Alignment gi|XP_861044.1| PREDICTED: similar to DNA-directed RNA polymera... 497 e-154
Alignment gi|XP_860670.1| PREDICTED: similar to DNA-directed RNA polymera... 497 e-154
Alignment gi|XP_860930.1| PREDICTED: similar to DNA-directed RNA polymera... 490 e-152
Alignment gi|XP_860899.1| PREDICTED: similar to DNA-directed RNA polymera... 488 e-151
Alignment gi|XP_861018.1| PREDICTED: similar to DNA-directed RNA polymera... 488 e-151
Alignment gi|XP_860838.1| PREDICTED: similar to DNA-directed RNA polymera... 486 e-151
Alignment gi|XP_860737.1| PREDICTED: similar to DNA-directed RNA polymera... 486 e-151
Alignment gi|XP_860990.1| PREDICTED: similar to DNA-directed RNA polymera... 481 e-149
>ref|XP_532382.2| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
2 [Canis familiaris].
Length = 1174
Score = 497 bits (1279), Expect(2) = e-154
Identities = 246/257 (95%), Positives = 246/257 (95%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSM YTDAGRICRPLL
Sbjct: 567 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLL 626
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 627 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 686
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 687 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 746
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 747 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 806
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 807 RSVFYRSYKEQESKKGF 823
Score = 66.6 bits (161), Expect(2) = e-154
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 534 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
>ref|XP_860708.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
6 [Canis familiaris].
Length = 1162
Score = 497 bits (1279), Expect(2) = e-154
Identities = 246/257 (95%), Positives = 246/257 (95%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSM YTDAGRICRPLL
Sbjct: 567 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLL 626
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 627 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 686
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 687 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 746
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 747 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 806
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 807 RSVFYRSYKEQESKKGF 823
Score = 66.6 bits (161), Expect(2) = e-154
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 534 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
>ref|XP_861044.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
17 [Canis familiaris].
Length = 1099
Score = 497 bits (1279), Expect(2) = e-154
Identities = 246/257 (95%), Positives = 246/257 (95%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSM YTDAGRICRPLL
Sbjct: 492 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLL 551
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 552 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 611
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 612 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 671
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 672 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 731
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 732 RSVFYRSYKEQESKKGF 748
Score = 66.6 bits (161), Expect(2) = e-154
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 459 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 490
>ref|XP_860670.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
5 [Canis familiaris].
Length = 932
Score = 497 bits (1279), Expect(2) = e-154
Identities = 246/257 (95%), Positives = 246/257 (95%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSM YTDAGRICRPLL
Sbjct: 567 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLL 626
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 627 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 686
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 687 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 746
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 747 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 806
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 807 RSVFYRSYKEQESKKGF 823
Score = 66.6 bits (161), Expect(2) = e-154
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 534 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
>ref|XP_860930.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
13 [Canis familiaris].
Length = 1180
Score = 490 bits (1262), Expect(2) = e-152
Identities = 246/263 (93%), Positives = 246/263 (93%), Gaps = 6/263 (2%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSM YTDAGRICRPLL
Sbjct: 567 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLL 626
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYS------WQDLVASGVVEYIDTLEEETVMLAMTPD 440
IVEKQKLLLKKRHIDQLKEREYNNYS WQDLVASGVVEYIDTLEEETVMLAMTPD
Sbjct: 627 IVEKQKLLLKKRHIDQLKEREYNNYSEFFFFSWQDLVASGVVEYIDTLEEETVMLAMTPD 686
Query: 441 DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 620
DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF
Sbjct: 687 DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 746
Query: 621 HVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSA 800
HVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSA
Sbjct: 747 HVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSA 806
Query: 801 VDRGFFRSVFYRSYKEQESKKGF 869
VDRGFFRSVFYRSYKEQESKKGF
Sbjct: 807 VDRGFFRSVFYRSYKEQESKKGF 829
Score = 66.6 bits (161), Expect(2) = e-152
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 534 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
>ref|XP_860899.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
12 [Canis familiaris].
Length = 1174
Score = 488 bits (1255), Expect(2) = e-151
Identities = 243/257 (94%), Positives = 244/257 (94%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDII +VSM YTDAGRICRPLL
Sbjct: 568 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDII-PDVSMIRDIREREIRIYTDAGRICRPLL 626
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 627 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 686
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 687 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 746
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 747 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 806
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 807 RSVFYRSYKEQESKKGF 823
Score = 66.6 bits (161), Expect(2) = e-151
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 535 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 566
>ref|XP_861018.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
16 [Canis familiaris].
Length = 1173
Score = 488 bits (1255), Expect(2) = e-151
Identities = 243/257 (94%), Positives = 244/257 (94%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDII +VSM YTDAGRICRPLL
Sbjct: 567 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDII-PDVSMIRDIREREIRIYTDAGRICRPLL 625
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 626 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 685
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 686 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 745
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 746 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 805
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 806 RSVFYRSYKEQESKKGF 822
Score = 66.6 bits (161), Expect(2) = e-151
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 534 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
>ref|XP_860838.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
10 [Canis familiaris].
Length = 1166
Score = 486 bits (1252), Expect(2) = e-151
Identities = 243/257 (94%), Positives = 243/257 (94%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVS M YTDAGRICRPLL
Sbjct: 562 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVS---MIRDIREREIRIYTDAGRICRPLL 618
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 619 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 678
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 679 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 738
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 739 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 798
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 799 RSVFYRSYKEQESKKGF 815
Score = 66.6 bits (161), Expect(2) = e-151
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 529 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 560
>ref|XP_860737.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
7 [Canis familiaris].
Length = 1113
Score = 486 bits (1252), Expect(2) = e-151
Identities = 243/257 (94%), Positives = 243/257 (94%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVS M YTDAGRICRPLL
Sbjct: 509 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVS---MIRDIREREIRIYTDAGRICRPLL 565
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 566 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 625
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 626 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 685
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 686 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 745
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 746 RSVFYRSYKEQESKKGF 762
Score = 66.6 bits (161), Expect(2) = e-151
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 476 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 507
>ref|XP_860990.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
15 [Canis familiaris].
Length = 1179
Score = 481 bits (1238), Expect(2) = e-149
Identities = 243/263 (92%), Positives = 244/263 (92%), Gaps = 6/263 (2%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDII +VSM YTDAGRICRPLL
Sbjct: 567 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDII-PDVSMIRDIREREIRIYTDAGRICRPLL 625
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYS------WQDLVASGVVEYIDTLEEETVMLAMTPD 440
IVEKQKLLLKKRHIDQLKEREYNNYS WQDLVASGVVEYIDTLEEETVMLAMTPD
Sbjct: 626 IVEKQKLLLKKRHIDQLKEREYNNYSEFFFFSWQDLVASGVVEYIDTLEEETVMLAMTPD 685
Query: 441 DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 620
DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF
Sbjct: 686 DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 745
Query: 621 HVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSA 800
HVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSA
Sbjct: 746 HVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSA 805
Query: 801 VDRGFFRSVFYRSYKEQESKKGF 869
VDRGFFRSVFYRSYKEQESKKGF
Sbjct: 806 VDRGFFRSVFYRSYKEQESKKGF 828
Score = 66.6 bits (161), Expect(2) = e-149
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 534 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,113,899
Number of extensions: 828108
Number of successful extensions: 2006
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1993
Number of HSP's successfully gapped: 29
Length of query: 290
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 188
Effective length of database: 15,474,232
Effective search space: 2909155616
Effective search space used: 2909155616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004455
(870 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Ho... 497 e-154
Alignment gi|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 is... 199 4e-51
Alignment gi|NP_001154180.1| DNA-directed RNA polymerase III subunit RPC2... 199 4e-51
Alignment gi|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 i... 119 4e-27
Alignment gi|NP_061887.2| DNA-directed RNA polymerase I subunit RPA2 isof... 119 4e-27
>ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens].
Length = 1174
Score = 497 bits (1279), Expect(2) = e-154
Identities = 246/257 (95%), Positives = 246/257 (95%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSM YTDAGRICRPLL
Sbjct: 567 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLL 626
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 627 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 686
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 687 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 746
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 747 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 806
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 807 RSVFYRSYKEQESKKGF 823
Score = 66.6 bits (161), Expect(2) = e-154
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 534 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
>ref|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Homo
sapiens].
Length = 1133
Score = 199 bits (505), Expect = 4e-51
Identities = 104/249 (41%), Positives = 160/249 (64%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
+F+NG +G+ +D ++L+NT R +RR I VS+ +D GR+CRP +
Sbjct: 539 VFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVYISSDGGRLCRPYI 597
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A+ + +
Sbjct: 598 IVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIALYEHTINKDT 654
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N R+DT
Sbjct: 655 -------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
L ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++N++++DRGF
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFG 767
Query: 819 RSVFYRSYK 845
R + Y++ K
Sbjct: 768 RCLVYKNAK 776
>ref|NP_001154180.1| DNA-directed RNA polymerase III subunit RPC2 isoform 2 [Homo
sapiens].
Length = 1075
Score = 199 bits (505), Expect = 4e-51
Identities = 104/249 (41%), Positives = 160/249 (64%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
+F+NG +G+ +D ++L+NT R +RR I VS+ +D GR+CRP +
Sbjct: 481 VFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVYISSDGGRLCRPYI 539
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A+ + +
Sbjct: 540 IVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIALYEHTINKDT 596
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N R+DT
Sbjct: 597 -------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 649
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
L ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++N++++DRGF
Sbjct: 650 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFG 709
Query: 819 RSVFYRSYK 845
R + Y++ K
Sbjct: 710 RCLVYKNAK 718
>ref|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Homo sapiens].
Length = 1079
Score = 119 bits (298), Expect = 4e-27
Identities = 63/157 (40%), Positives = 90/157 (57%)
Frame = +3
Query: 369 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 548
+A G E I T+E+ + +A+ D++ + TH E+ P +L V A+ IPF DH
Sbjct: 570 LALGKEELIGTMEQIFMNVAIFEDEV------FAGVTTHQELFPHSLLSVIANFIPFSDH 623
Query: 549 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 728
NQSPRN YQ MGKQ MG + + R D + L PQ PLV +Y P G
Sbjct: 624 NQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGT 683
Query: 729 NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 839
N+IVA+ SYTGY+ ED++I+N+++ +RGF Y+S
Sbjct: 684 NAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS 720
>ref|NP_061887.2| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Homo sapiens].
Length = 1135
Score = 119 bits (298), Expect = 4e-27
Identities = 63/157 (40%), Positives = 90/157 (57%)
Frame = +3
Query: 369 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 548
+A G E I T+E+ + +A+ D++ + TH E+ P +L V A+ IPF DH
Sbjct: 626 LALGKEELIGTMEQIFMNVAIFEDEV------FAGVTTHQELFPHSLLSVIANFIPFSDH 679
Query: 549 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 728
NQSPRN YQ MGKQ MG + + R D + L PQ PLV +Y P G
Sbjct: 680 NQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGT 739
Query: 729 NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 839
N+IVA+ SYTGY+ ED++I+N+++ +RGF Y+S
Sbjct: 740 NAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS 776
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,666,299
Number of extensions: 822415
Number of successful extensions: 2061
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2057
Number of HSP's successfully gapped: 6
Length of query: 290
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 188
Effective length of database: 14,934,836
Effective search space: 2807749168
Effective search space used: 2807749168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004455
(870 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mu... 497 e-154
Alignment gi|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [M... 196 2e-50
Alignment gi|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus... 114 1e-25
>ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus].
Length = 1174
Score = 497 bits (1279), Expect(2) = e-154
Identities = 246/257 (95%), Positives = 246/257 (95%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSM YTDAGRICRPLL
Sbjct: 567 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLL 626
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 627 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 686
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 687 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 746
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 747 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 806
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 807 RSVFYRSYKEQESKKGF 823
Score = 66.6 bits (161), Expect(2) = e-154
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 534 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
>ref|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [Mus musculus].
Length = 1133
Score = 196 bits (498), Expect = 2e-50
Identities = 103/249 (41%), Positives = 160/249 (64%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
+F+NG +G+ +D ++L++T R +RR I VS+ +D GR+CRP +
Sbjct: 539 VFLNGNILGVIRDHKKLVSTFRLMRRA-GYINEFVSISTNLTDRCVYISSDGGRLCRPYI 597
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A+ + +
Sbjct: 598 IVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIALYEHTINKDT 654
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N R+DT
Sbjct: 655 -------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 707
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
L ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++N++++DRGF
Sbjct: 708 LMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFG 767
Query: 819 RSVFYRSYK 845
R + Y++ K
Sbjct: 768 RCLVYKNAK 776
>ref|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus musculus].
Length = 1135
Score = 114 bits (284), Expect = 1e-25
Identities = 61/154 (39%), Positives = 88/154 (57%)
Frame = +3
Query: 378 GVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQS 557
G E I T+E+ + +A+ D++ + TH E+ P +L V A+ IPF DHNQS
Sbjct: 629 GREELIGTMEQLFMNVAIFEDEV------FGGISTHQELFPHSLLSVIANFIPFSDHNQS 682
Query: 558 PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSI 737
PRN YQ MGKQ MG + + R D + L PQ PLV ++ P G N+I
Sbjct: 683 PRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAI 742
Query: 738 VAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 839
VA+ SYTGY+ ED++I+N+++ +RGF Y+S
Sbjct: 743 VAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS 776
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,025,419
Number of extensions: 710805
Number of successful extensions: 1716
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1713
Number of HSP's successfully gapped: 4
Length of query: 290
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 190
Effective length of database: 12,613,959
Effective search space: 2396652210
Effective search space used: 2396652210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004455
(870 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II su... 497 e-154
Alignment gi|XP_003355419.1| PREDICTED: DNA-directed RNA polymerase III s... 199 2e-51
Alignment gi|XP_003124849.2| PREDICTED: DNA-directed RNA polymerase I sub... 117 1e-26
>ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa].
Length = 1167
Score = 497 bits (1279), Expect(2) = e-154
Identities = 246/257 (95%), Positives = 246/257 (95%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSM YTDAGRICRPLL
Sbjct: 560 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLL 619
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE
Sbjct: 620 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 679
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT
Sbjct: 680 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 739
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF
Sbjct: 740 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 799
Query: 819 RSVFYRSYKEQESKKGF 869
RSVFYRSYKEQESKKGF
Sbjct: 800 RSVFYRSYKEQESKKGF 816
Score = 66.6 bits (161), Expect(2) = e-154
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1
Query: 1 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 96
VGSQPSPILEFLEEWSMENLEEISPAAIADAT
Sbjct: 527 VGSQPSPILEFLEEWSMENLEEISPAAIADAT 558
>ref|XP_003355419.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Sus
scrofa].
Length = 1075
Score = 199 bits (505), Expect = 2e-51
Identities = 104/249 (41%), Positives = 160/249 (64%)
Frame = +3
Query: 99 IFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMXXXXXXXXXXXYTDAGRICRPLL 278
+F+NG +G+ +D ++L+NT R +RR I VS+ +D GR+CRP +
Sbjct: 481 VFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVYISSDGGRLCRPYI 539
Query: 279 IVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKE 458
IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A+ + +
Sbjct: 540 IVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIALYEHTINKDT 596
Query: 459 VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 638
TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N R+DT
Sbjct: 597 -------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDT 649
Query: 639 LAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 818
L ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++N++++DRGF
Sbjct: 650 LMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFG 709
Query: 819 RSVFYRSYK 845
R + Y++ K
Sbjct: 710 RCLVYKNAK 718
>ref|XP_003124849.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Sus
scrofa].
Length = 1094
Score = 117 bits (292), Expect = 1e-26
Identities = 63/154 (40%), Positives = 87/154 (56%)
Frame = +3
Query: 378 GVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQS 557
G E I T+E+ + +A+ D++ TH E+ P +L V A+ IPF DHNQS
Sbjct: 588 GREELIGTMEQIFMNVAIFEDEV------LAGVTTHQELFPHSLLSVIANFIPFSDHNQS 641
Query: 558 PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSI 737
PRN YQ MGKQ MG + F R D + L PQ PLV +Y P G N+I
Sbjct: 642 PRNMYQCQMGKQTMGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAI 701
Query: 738 VAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 839
VA+ SYTGY+ ED++I+N+++ +RGF Y+S
Sbjct: 702 VAVISYTGYDMEDAMILNKASWERGFAHGSVYKS 735
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,361,481
Number of extensions: 509492
Number of successful extensions: 1225
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1223
Number of HSP's successfully gapped: 4
Length of query: 290
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,904,026
Effective search space: 1709572992
Effective search space used: 1709572992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004455
(870 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 398 e-108
Sscrofa_Chr05 76 4e-11
>Sscrofa_Chr08
|| Length = 148491826
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 354 agttggcaggatcttgtggccagtggggtagtggagtacatcgatactctagaagaagaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59045712 agttggcaggatcttgtggccagtggggtagtggagtacatcgatactctagaagaagaa 59045771
Query: 414 acagtgatgctcgcaatgaccccagacgacttacaggagaaggaagtagcttattgttcc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59045772 acagtgatgctcgcaatgaccccagacgacttacaggagaaggaagtagcttattgttcc 59045831
Query: 474 acatacacacactgtgagattcatccatcaatgattcttggtgtctgtgcctcaattatt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59045832 acatacacacactgtgagattcatccatcaatgattcttggtgtctgtgcctcaattatt 59045891
Query: 534 ccttttcctgatcataaccag 554
|||||||||||||||||||||
Sbjct: 59045892 ccttttcctgatcataaccag 59045912
Score = 341 bits (172), Expect = 4e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 553 agtcccccagaaacacataccagtctgccatggggaagcaggccatgggggtttatatca 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59046953 agtcccccagaaacacataccagtctgccatggggaagcaggccatgggggtttatatca 59047012
Query: 613 ccaactttcacgtgcgcatggacaccttggcccacgttctctattaccctcagaaaccac 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59047013 ccaactttcacgtgcgcatggacaccttggcccacgttctctattaccctcagaaaccac 59047072
Query: 673 ttgtgactacacggtctatggagtatctgcgattcagagagctgcctgcagg 724
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59047073 ttgtgactacacggtctatggagtatctgcgattcagagagctgcctgcagg 59047124
Score = 307 bits (155), Expect = 5e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 201 gtttctatgatcagagatattcgtgagagagagattcggatctatacagatgcaggtcgc 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59044559 gtttctatgatcagagatattcgtgagagagagattcggatctatacagatgcaggtcgc 59044618
Query: 261 atttgtaggccacttctcattgtggagaaacaaaagctacttttgaagaagagacatatt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59044619 atttgtaggccacttctcattgtggagaaacaaaagctacttttgaagaagagacatatt 59044678
Query: 321 gatcagttgaaagagagagaatataacaattacag 355
|||||||||||||||||||||||||||||||||||
Sbjct: 59044679 gatcagttgaaagagagagaatataacaattacag 59044713
Score = 206 bits (104), Expect = 1e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 99 atctttgttaatggctgctgggtcggaatacataaagatcctgaacaactgatgaacact 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59039327 atctttgttaatggctgctgggtcggaatacataaagatcctgaacaactgatgaacact 59039386
Query: 159 ctaaggaaactgcggcgccagatggacatcatcgtgtctgaagt 202
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59039387 ctaaggaaactgcggcgccagatggacatcatcgtgtctgaagt 59039430
Score = 204 bits (103), Expect = 6e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 721 caggcattaactcaattgtggccattgcatcatacactggatataatcaagaggactctg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59056138 caggcattaactcaattgtggccattgcatcatacactggatataatcaagaggactctg 59056197
Query: 781 ttatcatgaaccgttcagctgtagaccgaggctttttcaggtc 823
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59056198 ttatcatgaaccgttcagctgtagaccgaggctttttcaggtc 59056240
Score = 176 bits (89), Expect = 1e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 gttggatctcaaccttctccaattctagagtttttagaagaatggagtatggaaaattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59039134 gttggatctcaaccttctccaattctagagtttttagaagaatggagtatggaaaattta 59039193
Query: 61 gaagaaatttctcctgcagctattgctga 89
|||||||||||||||||||||||||||||
Sbjct: 59039194 gaagaaatttctcctgcagctattgctga 59039222
Score = 129 bits (65), Expect = 3e-27
Identities = 83/89 (93%)
Strand = Plus / Minus
Query: 1 gttggatctcaaccttctccaattctagagtttttagaagaatggagtatggaaaattta 60
||||||| ||||||||||||| |||| |||| |||||||||||||| |||||||||||||
Sbjct: 57393555 gttggatatcaaccttctccagttctggagtctttagaagaatggaatatggaaaattta 57393496
Query: 61 gaagaaatttctcctgcagctattgctga 89
|||||||||||||||| ||||||||||||
Sbjct: 57393495 gaagaaatttctcctgtagctattgctga 57393467
Score = 127 bits (64), Expect = 1e-26
Identities = 94/104 (90%)
Strand = Plus / Minus
Query: 99 atctttgttaatggctgctgggtcggaatacataaagatcctgaacaactgatgaacact 158
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 57393359 atctttgttaatggctgctgggttgggatacataaagatcctgaacaactgatgaacact 57393300
Query: 159 ctaaggaaactgcggcgccagatggacatcatcgtgtctgaagt 202
|||| |||| || ||||||| |||| ||| || ||||||||||
Sbjct: 57393299 ctaaagaaattgtggcgccaaatggccatggtcttgtctgaagt 57393256
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 819 aggtctgttttctatcgatcatacaaagaacaagagtctaagaaagggtttg 870
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59057654 aggtctgttttctatcgatcatacaaagaacaagagtctaagaaagggtttg 59057705
>Sscrofa_Chr05
|| Length = 111506441
Score = 75.8 bits (38), Expect = 4e-11
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 544 atcataaccagtcccccagaaacacataccagtctgccatggggaagcaggccatggg 601
|||||||||||||||| ||||||||||| |||| |||||||||||| || ||||||||
Sbjct: 13739283 atcataaccagtccccgagaaacacatatcagtgtgccatggggaaacaagccatggg 13739340
Score = 75.8 bits (38), Expect = 4e-11
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 544 atcataaccagtcccccagaaacacataccagtctgccatggggaagcaggccatggg 601
|||||||||||||||| ||||||||||| |||| |||||||||||| || ||||||||
Sbjct: 13962178 atcataaccagtccccgagaaacacatatcagtgtgccatggggaaacaagccatggg 13962121
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,879,390
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 11
Length of query: 870
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 849
Effective length of database: 2,808,413,156
Effective search space: 2384342769444
Effective search space used: 2384342769444
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)