Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004466
(924 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002687912.1| PREDICTED: lymphocyte-activation protein 3-l... 254 7e-68
Alignment gi|XP_593126.4| PREDICTED: lymphocyte-activation protein 3-like... 254 7e-68
>ref|XP_002687912.1| PREDICTED: lymphocyte-activation protein 3-like [Bos taurus].
Length = 516
Score = 254 bits (649), Expect = 7e-68
Identities = 128/165 (77%), Positives = 135/165 (81%)
Frame = +2
Query: 398 PDPRAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRTGQVTWQHLPDXXXXXXXXXXXXXX 577
P+P AEVPVVWAQEGAPAQLPCSPTIPLQDLSL RT QVTWQH+P+
Sbjct: 24 PEPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLPRTRQVTWQHVPESGSAAPTPRGPGPR 83
Query: 578 RYTVLRVAPGGLRIGRPPLQPRVQLEERGLQRGDFSLWLRPARRDDAGEYRAAVSLRDRD 757
RYTVLR+APGGLRIG+ PLQPRVQLEE GLQRGDFSLWLRPARR DAGEY AAV R +
Sbjct: 84 RYTVLRLAPGGLRIGKLPLQPRVQLEEMGLQRGDFSLWLRPARRADAGEYHAAV--RFGN 141
Query: 758 RALVCLLRLRVGQAAVTASPPGSLWTSHWVILNCSFSRPDFPASV 892
RAL C LRLRVGQAAVTASPPG LWTS WV+LNCSFSRPD PASV
Sbjct: 142 RALACRLRLRVGQAAVTASPPGPLWTSSWVVLNCSFSRPDLPASV 186
>ref|XP_593126.4| PREDICTED: lymphocyte-activation protein 3-like [Bos taurus].
Length = 516
Score = 254 bits (649), Expect = 7e-68
Identities = 128/165 (77%), Positives = 135/165 (81%)
Frame = +2
Query: 398 PDPRAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRTGQVTWQHLPDXXXXXXXXXXXXXX 577
P+P AEVPVVWAQEGAPAQLPCSPTIPLQDLSL RT QVTWQH+P+
Sbjct: 24 PEPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLPRTRQVTWQHVPESGSAAPTPRGPGPR 83
Query: 578 RYTVLRVAPGGLRIGRPPLQPRVQLEERGLQRGDFSLWLRPARRDDAGEYRAAVSLRDRD 757
RYTVLR+APGGLRIG+ PLQPRVQLEE GLQRGDFSLWLRPARR DAGEY AAV R +
Sbjct: 84 RYTVLRLAPGGLRIGKLPLQPRVQLEEMGLQRGDFSLWLRPARRADAGEYHAAV--RFGN 141
Query: 758 RALVCLLRLRVGQAAVTASPPGSLWTSHWVILNCSFSRPDFPASV 892
RAL C LRLRVGQAAVTASPPG LWTS WV+LNCSFSRPD PASV
Sbjct: 142 RALACRLRLRVGQAAVTASPPGPLWTSSWVVLNCSFSRPDLPASV 186
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,896,159
Number of extensions: 824028
Number of successful extensions: 5386
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5317
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,306,398
Effective search space: 2947117988
Effective search space used: 2947117988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004466
(924 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543847.2| PREDICTED: similar to lymphocyte-activation pro... 75 7e-14
>ref|XP_543847.2| PREDICTED: similar to lymphocyte-activation protein 3 precursor
[Canis familiaris].
Length = 392
Score = 75.5 bits (184), Expect = 7e-14
Identities = 34/46 (73%), Positives = 36/46 (78%)
Frame = +2
Query: 398 PDPRAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRTGQVTWQHLPD 535
P EV VVWAQEGAP QLPCSPTIPLQD+SLLR VTW HLP+
Sbjct: 23 PGSGTEVQVVWAQEGAPVQLPCSPTIPLQDVSLLRNAGVTWYHLPE 68
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,265,105
Number of extensions: 852170
Number of successful extensions: 5790
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5715
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 206
Effective length of database: 15,474,232
Effective search space: 3187691792
Effective search space used: 3187691792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004466
(924 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002277.4| lymphocyte activation gene 3 protein precursor ... 231 7e-61
>ref|NP_002277.4| lymphocyte activation gene 3 protein precursor [Homo sapiens].
Length = 525
Score = 231 bits (589), Expect = 7e-61
Identities = 125/178 (70%), Positives = 129/178 (72%), Gaps = 15/178 (8%)
Frame = +2
Query: 404 PRAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRTGQVTWQHLPDXXXXXXXXXXXXXX-- 577
P AEVPVVWAQEGAPAQLPCSPTIPLQDLSLLR VTWQH PD
Sbjct: 25 PGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRRAGVTWQHQPDSGPPAAAPGHPLAPGP 84
Query: 578 -------------RYTVLRVAPGGLRIGRPPLQPRVQLEERGLQRGDFSLWLRPARRDDA 718
RYTVL V PGGLR GR PLQPRVQL+ERG QRGDFSLWLRPARR DA
Sbjct: 85 HPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPRVQLDERGRQRGDFSLWLRPARRADA 144
Query: 719 GEYRAAVSLRDRDRALVCLLRLRVGQAAVTASPPGSLWTSHWVILNCSFSRPDFPASV 892
GEYRAAV L RDRAL C LRLR+GQA++TASPPGSL S WVILNCSFSRPD PASV
Sbjct: 145 GEYRAAVHL--RDRALSCRLRLRLGQASMTASPPGSLRASDWVILNCSFSRPDRPASV 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,439,793
Number of extensions: 820926
Number of successful extensions: 5293
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5245
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,934,836
Effective search space: 3076576216
Effective search space used: 3076576216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004466
(924 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032505.1| lymphocyte activation gene 3 protein precursor ... 189 3e-48
>ref|NP_032505.1| lymphocyte activation gene 3 protein precursor [Mus musculus].
Length = 521
Score = 189 bits (480), Expect = 3e-48
Identities = 105/174 (60%), Positives = 111/174 (63%), Gaps = 11/174 (6%)
Frame = +2
Query: 404 PRAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRTGQVTWQHLPDXXXXXXXXXXXXXX-- 577
P E+PVVWAQEGAP LPCS P D + LR G V WQH PD
Sbjct: 25 PGKELPVVWAQEGAPVHLPCSLKSPNLDPNFLRRGGVIWQHQPDSGQPTPIPALDLHQGM 84
Query: 578 ---------RYTVLRVAPGGLRIGRPPLQPRVQLEERGLQRGDFSLWLRPARRDDAGEYR 730
RYTVL VAPGGLR GR PL P VQLEERGLQRGDFSLWLRPA R DAGEY
Sbjct: 85 PSPRQPAPGRYTVLSVAPGGLRSGRQPLHPHVQLEERGLQRGDFSLWLRPALRTDAGEYH 144
Query: 731 AAVSLRDRDRALVCLLRLRVGQAAVTASPPGSLWTSHWVILNCSFSRPDFPASV 892
A V L +RAL C LRLRVGQA++ ASP G L S WV+LNCSFSRPD P SV
Sbjct: 145 ATVRL--PNRALSCSLRLRVGQASMIASPSGVLKLSDWVLLNCSFSRPDRPVSV 196
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,313,976
Number of extensions: 672459
Number of successful extensions: 4183
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4127
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 207
Effective length of database: 12,583,923
Effective search space: 2604872061
Effective search space used: 2604872061
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004466
(924 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098776.1| lymphocyte activation gene 3 protein [Sus sc... 308 2e-84
>ref|NP_001098776.1| lymphocyte activation gene 3 protein [Sus scrofa].
Length = 507
Score = 308 bits (790), Expect = 2e-84
Identities = 151/165 (91%), Positives = 151/165 (91%)
Frame = +2
Query: 398 PDPRAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRTGQVTWQHLPDXXXXXXXXXXXXXX 577
PDPRAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRTGQVTWQHLPD
Sbjct: 23 PDPRAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRTGQVTWQHLPDRGPAAPSPQSPGPR 82
Query: 578 RYTVLRVAPGGLRIGRPPLQPRVQLEERGLQRGDFSLWLRPARRDDAGEYRAAVSLRDRD 757
RYTVLRVAPGGLRIGRPPLQPRVQLEERGLQRGDFSLWLRPARRDDAGEYRAAVSLRDRD
Sbjct: 83 RYTVLRVAPGGLRIGRPPLQPRVQLEERGLQRGDFSLWLRPARRDDAGEYRAAVSLRDRD 142
Query: 758 RALVCLLRLRVGQAAVTASPPGSLWTSHWVILNCSFSRPDFPASV 892
RALVCLLRLRVGQAAVTASPPGSLWTSHWVILNCSFSRPDFPASV
Sbjct: 143 RALVCLLRLRVGQAAVTASPPGSLWTSHWVILNCSFSRPDFPASV 187
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,042,447
Number of extensions: 533866
Number of successful extensions: 3482
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3378
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 209
Effective length of database: 8,879,129
Effective search space: 1855737961
Effective search space used: 1855737961
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004466
(924 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 533 e-149
gb|GL895305.2| Sus scrofa unplaced genomic scaffold ChrUScaf3189 301 4e-79
>Sscrofa_Chr05
|| Length = 111506441
Score = 533 bits (269), Expect = e-149
Identities = 269/269 (100%)
Strand = Plus / Minus
Query: 535 caggggccccgcggcgccctcccctcagagcccggggccccgccgctacacggtgctcag 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66368558 caggggccccgcggcgccctcccctcagagcccggggccccgccgctacacggtgctcag 66368499
Query: 595 ggtggctcccggaggcctgcgcatcgggaggccgccactgcagccccgcgtgcagctgga 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66368498 ggtggctcccggaggcctgcgcatcgggaggccgccactgcagccccgcgtgcagctgga 66368439
Query: 655 agagcgcggcctccagcgcggggacttctcgctgtggctgcgcccggcccgacgcgacga 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66368438 agagcgcggcctccagcgcggggacttctcgctgtggctgcgcccggcccgacgcgacga 66368379
Query: 715 cgccggcgagtaccgcgccgccgtgagcctccgggaccgggaccgcgccctcgtctgcct 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66368378 cgccggcgagtaccgcgccgccgtgagcctccgggaccgggaccgcgccctcgtctgcct 66368319
Query: 775 cctccgtctgcgcgtgggccaggcagcgg 803
|||||||||||||||||||||||||||||
Sbjct: 66368318 cctccgtctgcgcgtgggccaggcagcgg 66368290
Score = 305 bits (154), Expect = 2e-80
Identities = 170/178 (95%)
Strand = Plus / Minus
Query: 1 gaaggacaggggccgcggccctgggagcagcagaacggcctccagctcgagacagccacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66369815 gaaggacaggggccgcggccctgggagcagcagaacggcctccagctcgagacagccacc 66369756
Query: 61 ttgtctccactctgctctctgccagcaccctgccccatccctgaggannnnnnnnagccc 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 66369755 ttgtctccactctgctctctgccagcaccctgccccatccctgaggaccccccccagccc 66369696
Query: 121 atcctgagcccaccttcctgctgcctgatccggccagctttcctctagattcattggt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66369695 atcctgagcccaccttcctgctgcctgatccggccagctttcctctagattcattggt 66369638
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 387 cagtggaggctccagacccaagggcagaggtcccggtggtgtgggcccaggagggggctc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66369120 cagtggaggctccagacccaagggcagaggtcccggtggtgtgggcccaggagggggctc 66369061
Query: 447 ctgcccagctcccctgcagccccacaatccccctccaggatctcagccttctgcgaacag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66369060 ctgcccagctcccctgcagccccacaatccccctccaggatctcagccttctgcgaacag 66369001
Query: 507 gacaagtcacttggcagcatctaccagacagg 538
||||||||||||||||||||||||||||||||
Sbjct: 66369000 gacaagtcacttggcagcatctaccagacagg 66368969
Score = 289 bits (146), Expect = 1e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 244 gcagaacctctctcttttgtctgttagtccttctccactgtctgacctcttccctttgga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66369572 gcagaacctctctcttttgtctgttagtccttctccactgtctgacctcttccctttgga 66369513
Query: 304 gggctgtgtggtccaggcctcaggggagatgggggaggctcacttcctcatctggctgct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66369512 gggctgtgtggtccaggcctcaggggagatgggggaggctcacttcctcatctggctgct 66369453
Query: 364 tctgcaactgctctgcgcggctgcag 389
||||||||||||||||||||||||||
Sbjct: 66369452 tctgcaactgctctgcgcggctgcag 66369427
Score = 149 bits (75), Expect = 3e-33
Identities = 85/87 (97%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 821 gggtctctgtggacctcgcattgggtcattttgaactgctccttcagccgccctgacttc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66367658 gggtctctgtggacctcgcattgggtcattttgaactgctccttcagccgccctgacttc 66367599
Query: 881 ccagcctccgtgccacgggttccgcgg 907
|||||||||||| ||| ||||||||||
Sbjct: 66367598 ccagcctccgtg-cactggttccgcgg 66367573
>gb|GL895305.2| Sus scrofa unplaced genomic scaffold ChrUScaf3189
Length = 60441
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 387 cagtggaggctccagacccaagggcagaggtcccggtggtgtgggcccaggagggggctc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22222 cagtggaggctccagacccaagggcagaggtcccggtggtgtgggcccaggagggggctc 22163
Query: 447 ctgcccagctcccctgcagccccacaatccccctccaggatctcagccttctgcgaacag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22162 ctgcccagctcccctgcagccccacaatccccctccaggatctcagccttctgcgaacag 22103
Query: 507 gacaagtcacttggcagcatctaccagacagg 538
||||||||||||||||||||||||||||||||
Sbjct: 22102 gacaagtcacttggcagcatctaccagacagg 22071
Score = 289 bits (146), Expect = 1e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 244 gcagaacctctctcttttgtctgttagtccttctccactgtctgacctcttccctttgga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22674 gcagaacctctctcttttgtctgttagtccttctccactgtctgacctcttccctttgga 22615
Query: 304 gggctgtgtggtccaggcctcaggggagatgggggaggctcacttcctcatctggctgct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22614 gggctgtgtggtccaggcctcaggggagatgggggaggctcacttcctcatctggctgct 22555
Query: 364 tctgcaactgctctgcgcggctgcag 389
||||||||||||||||||||||||||
Sbjct: 22554 tctgcaactgctctgcgcggctgcag 22529
Score = 283 bits (143), Expect = 8e-74
Identities = 170/181 (93%), Gaps = 3/181 (1%)
Strand = Plus / Minus
Query: 1 gaaggacaggggccgcggccctgggag---cagcagaacggcctccagctcgagacagcc 57
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 22920 gaaggacaggggccgcggccctgggagnagcagcagaacggcctccagctcgagacagcc 22861
Query: 58 accttgtctccactctgctctctgccagcaccctgccccatccctgaggannnnnnnnag 117
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 22860 accttgtctccactctgctctctgccagcaccctgccccatccctgaggaccccccccag 22801
Query: 118 cccatcctgagcccaccttcctgctgcctgatccggccagctttcctctagattcattgg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22800 cccatcctgagcccaccttcctgctgcctgatccggccagctttcctctagattcattgg 22741
Query: 178 t 178
|
Sbjct: 22740 t 22740
Score = 149 bits (75), Expect = 3e-33
Identities = 85/87 (97%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 821 gggtctctgtggacctcgcattgggtcattttgaactgctccttcagccgccctgacttc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21102 gggtctctgtggacctcgcattgggtcattttgaactgctccttcagccgccctgacttc 21043
Query: 881 ccagcctccgtgccacgggttccgcgg 907
|||||||||||| ||| ||||||||||
Sbjct: 21042 ccagcctccgtg-cactggttccgcgg 21017
Score = 95.6 bits (48), Expect = 4e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 756 accgcgccctcgtctgcctcctccgtctgcgcgtgggccaggcagcgg 803
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21862 accgcgccctcgtctgcctcctccgtctgcgcgtgggccaggcagcgg 21815
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,555,462
Number of extensions: 205
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 12
Length of query: 924
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 903
Effective length of database: 2,808,413,156
Effective search space: 2535997079868
Effective search space used: 2535997079868
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)