Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004471
(940 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092361.1| sin3 histone deacetylase corepressor complex... 350 8e-97
Alignment gi|XP_001249931.1| PREDICTED: breast cancer metastasis-suppress... 62 9e-10
>ref|NP_001092361.1| sin3 histone deacetylase corepressor complex component SDS3 [Bos
taurus].
Length = 328
Score = 350 bits (899), Expect = 8e-97
Identities = 184/227 (81%), Positives = 185/227 (81%)
Frame = +3
Query: 258 RSCRGRXXXXXXXXXXXXXLAKHDEEDYVEMKEQMYQDKLASLKRXXXXXXXXXXXXXXK 437
RSCRGR LAKHDEED+VEMKEQMYQDKLASLKR K
Sbjct: 38 RSCRGRESDEDTEDASETDLAKHDEEDFVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQK 97
Query: 438 RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 617
RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK
Sbjct: 98 RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 157
Query: 618 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 797
KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM
Sbjct: 158 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 217
Query: 798 EDLRTLNXXXXXXXXXXXXXXEHLPATPAESPAQRFEARIEDGKLYY 938
EDLRTLN EHLP TPAESPAQRFEARIEDGKLYY
Sbjct: 218 EDLRTLNKLKSPKRPASPSSPEHLPTTPAESPAQRFEARIEDGKLYY 264
>ref|XP_001249931.1| PREDICTED: breast cancer metastasis-suppressor 1-like [Bos taurus].
Length = 293
Score = 61.6 bits (148), Expect = 9e-10
Identities = 46/206 (22%), Positives = 97/206 (47%), Gaps = 3/206 (1%)
Frame = +3
Query: 330 EEDYVEMKEQMYQDKLASLKRXXXXXXXXXXXXXXKRMKKLDQQYKERIRNAELFLQLET 509
E+ + ++K+Q+Y+++L+ + + + L + + R + A ++ +L
Sbjct: 39 EKQFTDLKDQLYKEQLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCL 98
Query: 510 EQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGDSMEVKPIM 689
E V+ Y E +A+ + E +K+ L + + ++LEEK + +E ++ ++++T + + +
Sbjct: 99 ESVKNKYECEIQASRQHCESEKLLLYDTVQSKLEEKIRRLEEDRHSIDITSELWNDE-LQ 157
Query: 690 TRKLRRRPNDPVPIPDKRRKPAPAQ---LNYLLTDEQIMEDLRTLNXXXXXXXXXXXXXX 860
+RK R+ P P ++KP + Y+L D I+ED T+
Sbjct: 158 SRKKRKDPFSP-----DKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAVATLGPHRVKTE 212
Query: 861 EHLPATPAESPAQRFEARIEDGKLYY 938
P + Q AR E+G+LYY
Sbjct: 213 P-----PVKLEKQLHSARSEEGRLYY 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,219,558
Number of extensions: 656920
Number of successful extensions: 3182
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3155
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,306,398
Effective search space: 3018649978
Effective search space used: 3018649978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004471
(940 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543419.2| PREDICTED: similar to Sin3 histone deacetylase ... 353 1e-97
>ref|XP_543419.2| PREDICTED: similar to Sin3 histone deacetylase corepressor complex
component SDS3 [Canis familiaris].
Length = 434
Score = 353 bits (907), Expect = 1e-97
Identities = 186/227 (81%), Positives = 186/227 (81%)
Frame = +3
Query: 258 RSCRGRXXXXXXXXXXXXXLAKHDEEDYVEMKEQMYQDKLASLKRXXXXXXXXXXXXXXK 437
RSCRGR LAKHDEEDYVEMKEQMYQDKLASLKR K
Sbjct: 38 RSCRGRESDEDTEDASETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQK 97
Query: 438 RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 617
RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK
Sbjct: 98 RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 157
Query: 618 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 797
KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM
Sbjct: 158 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 217
Query: 798 EDLRTLNXXXXXXXXXXXXXXEHLPATPAESPAQRFEARIEDGKLYY 938
EDLRTLN EHLPATPAESPAQRFEARIEDGKLYY
Sbjct: 218 EDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYY 264
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,548,894
Number of extensions: 684136
Number of successful extensions: 3952
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3915
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 210
Effective length of database: 15,440,896
Effective search space: 3242588160
Effective search space used: 3242588160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004471
(940 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071936.2| sin3 histone deacetylase corepressor complex co... 353 1e-97
>ref|NP_071936.2| sin3 histone deacetylase corepressor complex component SDS3 [Homo
sapiens].
Length = 328
Score = 353 bits (907), Expect = 1e-97
Identities = 186/227 (81%), Positives = 186/227 (81%)
Frame = +3
Query: 258 RSCRGRXXXXXXXXXXXXXLAKHDEEDYVEMKEQMYQDKLASLKRXXXXXXXXXXXXXXK 437
RSCRGR LAKHDEEDYVEMKEQMYQDKLASLKR K
Sbjct: 38 RSCRGRESDEDTEDASETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQK 97
Query: 438 RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 617
RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK
Sbjct: 98 RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 157
Query: 618 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 797
KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM
Sbjct: 158 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 217
Query: 798 EDLRTLNXXXXXXXXXXXXXXEHLPATPAESPAQRFEARIEDGKLYY 938
EDLRTLN EHLPATPAESPAQRFEARIEDGKLYY
Sbjct: 218 EDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYY 264
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,017,026
Number of extensions: 669087
Number of successful extensions: 3382
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3361
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,934,836
Effective search space: 3151250396
Effective search space used: 3151250396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004471
(940 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848737.3| sin3 histone deacetylase corepressor complex co... 352 2e-97
Alignment gi|NP_001116138.1| sin3 histone deacetylase corepressor complex... 352 2e-97
>ref|NP_848737.3| sin3 histone deacetylase corepressor complex component SDS3 isoform
a [Mus musculus].
Length = 328
Score = 352 bits (904), Expect = 2e-97
Identities = 185/227 (81%), Positives = 186/227 (81%)
Frame = +3
Query: 258 RSCRGRXXXXXXXXXXXXXLAKHDEEDYVEMKEQMYQDKLASLKRXXXXXXXXXXXXXXK 437
RSCRGR LAKHDEEDYVEMKEQMYQDKLASLKR K
Sbjct: 38 RSCRGRESDEDTEDASETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQK 97
Query: 438 RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 617
RMKKLDQQY+ERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK
Sbjct: 98 RMKKLDQQYRERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 157
Query: 618 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 797
KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM
Sbjct: 158 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 217
Query: 798 EDLRTLNXXXXXXXXXXXXXXEHLPATPAESPAQRFEARIEDGKLYY 938
EDLRTLN EHLPATPAESPAQRFEARIEDGKLYY
Sbjct: 218 EDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYY 264
>ref|NP_001116138.1| sin3 histone deacetylase corepressor complex component SDS3 isoform
b [Mus musculus].
Length = 332
Score = 352 bits (904), Expect = 2e-97
Identities = 185/227 (81%), Positives = 186/227 (81%)
Frame = +3
Query: 258 RSCRGRXXXXXXXXXXXXXLAKHDEEDYVEMKEQMYQDKLASLKRXXXXXXXXXXXXXXK 437
RSCRGR LAKHDEEDYVEMKEQMYQDKLASLKR K
Sbjct: 38 RSCRGRESDEDTEDASETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQK 97
Query: 438 RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 617
RMKKLDQQY+ERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK
Sbjct: 98 RMKKLDQQYRERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 157
Query: 618 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 797
KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM
Sbjct: 158 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 217
Query: 798 EDLRTLNXXXXXXXXXXXXXXEHLPATPAESPAQRFEARIEDGKLYY 938
EDLRTLN EHLPATPAESPAQRFEARIEDGKLYY
Sbjct: 218 EDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYY 264
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,704,740
Number of extensions: 559141
Number of successful extensions: 2689
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2665
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 212
Effective length of database: 12,583,923
Effective search space: 2667791676
Effective search space used: 2667791676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004471
(940 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230337.1| sin3 histone deacetylase corepressor complex... 353 6e-98
>ref|NP_001230337.1| sin3 histone deacetylase corepressor complex component SDS3 [Sus
scrofa].
Length = 326
Score = 353 bits (907), Expect = 6e-98
Identities = 186/227 (81%), Positives = 186/227 (81%)
Frame = +3
Query: 258 RSCRGRXXXXXXXXXXXXXLAKHDEEDYVEMKEQMYQDKLASLKRXXXXXXXXXXXXXXK 437
RSCRGR LAKHDEEDYVEMKEQMYQDKLASLKR K
Sbjct: 36 RSCRGRESDEDTEDASETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQK 95
Query: 438 RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 617
RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK
Sbjct: 96 RMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEK 155
Query: 618 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 797
KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM
Sbjct: 156 KKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIM 215
Query: 798 EDLRTLNXXXXXXXXXXXXXXEHLPATPAESPAQRFEARIEDGKLYY 938
EDLRTLN EHLPATPAESPAQRFEARIEDGKLYY
Sbjct: 216 EDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYY 262
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,536,001
Number of extensions: 423221
Number of successful extensions: 2028
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2017
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 214
Effective length of database: 8,879,129
Effective search space: 1900133606
Effective search space used: 1900133606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004471
(940 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 561 e-157
>Sscrofa_Chr14
|| Length = 153851969
Score = 561 bits (283), Expect = e-157
Identities = 283/283 (100%)
Strand = Plus / Minus
Query: 6 ggagtttggcgaagacagcgaaggggtcgccgcggctcccgctctacgggtcggcggctc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36447468 ggagtttggcgaagacagcgaaggggtcgccgcggctcccgctctacgggtcggcggctc 36447409
Query: 66 cctcgggcgctgctgggcagacgtggagtccgcagggcgggtgaccgcggtccccagctg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36447408 cctcgggcgctgctgggcagacgtggagtccgcagggcgggtgaccgcggtccccagctg 36447349
Query: 126 gcacgctcgactgcgggtagagtcgacatgagtgctgcgggactgctggctccagccccg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36447348 gcacgctcgactgcgggtagagtcgacatgagtgctgcgggactgctggctccagccccg 36447289
Query: 186 gctggagcgccgccggctccggagtactaccctgaggaggacgaagagctggagagcgcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36447288 gctggagcgccgccggctccggagtactaccctgaggaggacgaagagctggagagcgcc 36447229
Query: 246 gaggacgacgagcgcagctgccggggccgcgagtccgacgaag 288
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36447228 gaggacgacgagcgcagctgccggggccgcgagtccgacgaag 36447186
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 507 actgaacaagtggagagaaattatatcaaagaaaagaaggcagcagtgaaagaatttgaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36436428 actgaacaagtggagagaaattatatcaaagaaaagaaggcagcagtgaaagaatttgaa 36436369
Query: 567 gacaagaaggttgagctgaaggagaacctgatcgctgagctagaagaaaagaagaagatg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36436368 gacaagaaggttgagctgaaggagaacctgatcgctgagctagaagaaaagaagaagatg 36436309
Query: 627 atcgaaaatgaaaagctaactatggaactgactggag 663
|||||||||||||||||||||||||||||||||||||
Sbjct: 36436308 atcgaaaatgaaaagctaactatggaactgactggag 36436272
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 840 ccagcatccccatcctctcctgaacacttacctgccacacctgcagagtctccagctcag 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36426699 ccagcatccccatcctctcctgaacacttacctgccacacctgcagagtctccagctcag 36426640
Query: 900 agatttgaagcccggatagaagatggcaaattgtactatga 940
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 36426639 agatttgaagcccggatagaagatggcaaattgtactatga 36426599
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 662 agattcaatggaggtgaaacccatcatgaccagaaagttgcggaggcgaccgaatgatcc 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36429357 agattcaatggaggtgaaacccatcatgaccagaaagttgcggaggcgaccgaatgatcc 36429298
Query: 722 tgtccccatcccagacaagaggagaaagcctgctccag 759
||||||||||||||||||||||||||||||||||||||
Sbjct: 36429297 tgtccccatcccagacaagaggagaaagcctgctccag 36429260
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 413 aggtacattacaggaatatcagaagagaatgaagaagctcgatcagcagtacaaggagag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36439964 aggtacattacaggaatatcagaagagaatgaagaagctcgatcagcagtacaaggagag 36439905
Query: 473 gatacggaatgcag 486
||||||||||||||
Sbjct: 36439904 gatacggaatgcag 36439891
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 287 agacactgaggatgctagtgaaactgacctggcaaagcatgatgaggaagactatgtaga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36445273 agacactgaggatgctagtgaaactgacctggcaaagcatgatgaggaagactatgtaga 36445214
Query: 347 aatgaaggaacag 359
|||||||||||||
Sbjct: 36445213 aatgaaggaacag 36445201
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 760 cccagctaaactatttgttaacagatgaacagatcatggaagatctgagaacgttaaata 819
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Sbjct: 36428089 cccagctaaactatttgttaacagatgaacagatcatggaagatctgagaacgttaaata 36428030
Query: 820 ag 821
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Sbjct: 36428029 ag 36428028
Score = 115 bits (58), Expect = 4e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 359 gatgtatcaggataagttggcttctctcaagagacagttgcaacaactgcaggaaggt 416
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Sbjct: 36441275 gatgtatcaggataagttggcttctctcaagagacagttgcaacaactgcaggaaggt 36441218
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,955,341
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 8
Length of query: 940
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 919
Effective length of database: 2,808,413,156
Effective search space: 2580931690364
Effective search space used: 2580931690364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)