Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004472
(907 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068729.1| zinc finger protein 655 [Bos taurus]. 322 4e-88
Alignment gi|NP_001040079.1| zinc finger protein 3 [Bos taurus]. 84 2e-16
Alignment gi|NP_001193742.1| zinc finger protein 197 [Bos taurus]. 78 9e-15
Alignment gi|NP_001029645.1| zinc finger protein 205 [Bos taurus]. 76 5e-14
Alignment gi|XP_002685759.1| PREDICTED: KIAA1710 protein-like [Bos taurus]. 74 2e-13
Alignment gi|XP_001789139.1| PREDICTED: zinc finger protein 436 [Bos taur... 74 2e-13
Alignment gi|NP_001192439.1| zinc finger protein with KRAB and SCAN domai... 74 2e-13
Alignment gi|XP_002698259.1| PREDICTED: zinc finger protein 197-like [Bos... 74 2e-13
Alignment gi|XP_002687391.1| PREDICTED: zinc finger protein 286-like [Bos... 74 2e-13
Alignment gi|XP_582187.4| PREDICTED: zinc finger protein 286-like [Bos ta... 74 2e-13
>ref|NP_001068729.1| zinc finger protein 655 [Bos taurus].
Length = 181
Score = 322 bits (824), Expect = 4e-88
Identities = 160/181 (88%), Positives = 167/181 (92%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGS 339
MEE+SAQE A SP V FQ LE ++EGLSP PQFVQDTDMEQGLTGAPPVPQV +LPHEGS
Sbjct: 1 MEEVSAQEAAESPVVQFQSLETHSEGLSPEPQFVQDTDMEQGLTGAPPVPQVSSLPHEGS 60
Query: 340 PGDQAAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILL 519
PGDQAAALLTA YQEFVTFEDVAVHLTREEWGCLDPVQR LYREVMLENYGNLVSLGILL
Sbjct: 61 PGDQAAALLTARYQEFVTFEDVAVHLTREEWGCLDPVQRALYREVMLENYGNLVSLGILL 120
Query: 520 RLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSETPCPR 699
RLPTTRIHSVNSCPALSHTQASAFSGETLA+LSAGIS+RWP+ RLPIDSARP SE P PR
Sbjct: 121 RLPTTRIHSVNSCPALSHTQASAFSGETLAILSAGISRRWPRCRLPIDSARPRSEAPFPR 180
Query: 700 L 702
L
Sbjct: 181 L 181
>ref|NP_001040079.1| zinc finger protein 3 [Bos taurus].
Length = 447
Score = 83.6 bits (205), Expect = 2e-16
Identities = 49/99 (49%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +1
Query: 217 LEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGSPGDQ--AAALLTAMYQEFV 390
+E A+ +S PQ + L A P + P +G GD+ AAALL A QE V
Sbjct: 1 METQADRVSQEPQAL--------LESALPSSKGPTFSDKGGLGDEMLAAALLKAKAQELV 52
Query: 391 TFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSL 507
TFEDVAV+ R+EW L+P QRDLYR+VMLENYGN+ SL
Sbjct: 53 TFEDVAVYFIRKEWKRLEPAQRDLYRDVMLENYGNVFSL 91
>ref|NP_001193742.1| zinc finger protein 197 [Bos taurus].
Length = 1041
Score = 78.2 bits (191), Expect = 9e-15
Identities = 41/71 (57%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +1
Query: 301 PVPQVPALPHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREV 474
P P+ AL E +P +Q AL LTA QE V FE+V+V T EEW CL PVQR LY +V
Sbjct: 190 PAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWACLSPVQRALYWDV 249
Query: 475 MLENYGNLVSL 507
MLENYGN+ SL
Sbjct: 250 MLENYGNVTSL 260
>ref|NP_001029645.1| zinc finger protein 205 [Bos taurus].
Length = 550
Score = 75.9 bits (185), Expect = 5e-14
Identities = 66/182 (36%), Positives = 82/182 (45%), Gaps = 13/182 (7%)
Frame = +1
Query: 22 REAPASERARATPERQGRPREPGCPRRDGRLARPSAR*WSLSSSTGMEELSAQETAGSPR 201
R A ERAR TP +E LS S G L E SP
Sbjct: 9 RAAQDKERARETPGHGHSCQE------------------MLSESEGTVPLG--EAWESPH 48
Query: 202 VPFQPLEAYAEGLSPTPQFVQD---TDMEQGLT--------GAPPVPQVPALPHEGSPGD 348
+ +P E + EG+S + + QG GA P PQ P L EG D
Sbjct: 49 IKMEPEEPHPEGVSQETRAEGARGWVPLSQGTKEKVCFLPGGALPAPQTPVLSREGRTRD 108
Query: 349 Q--AAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILLR 522
+ AAALLTA Q VTFED+A++L+REEWG LD Q+ YREV+ + G +SLG
Sbjct: 109 RQMAAALLTAWSQMPVTFEDMALYLSREEWGRLDHTQQSFYREVLQKRSG--LSLGFPFS 166
Query: 523 LP 528
P
Sbjct: 167 RP 168
>ref|XP_002685759.1| PREDICTED: KIAA1710 protein-like [Bos taurus].
Length = 470
Score = 73.9 bits (180), Expect = 2e-13
Identities = 37/57 (64%), Positives = 44/57 (77%)
Frame = +1
Query: 352 AAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILLR 522
AA LL A Q VTFED+A++LTREEW LDP QRD+YR+VM ENYGN+VSL +R
Sbjct: 2 AATLLMAGSQAPVTFEDMAMYLTREEWRPLDPTQRDIYRDVMQENYGNVVSLDFEIR 58
>ref|XP_001789139.1| PREDICTED: zinc finger protein 436 [Bos taurus].
Length = 470
Score = 73.9 bits (180), Expect = 2e-13
Identities = 37/57 (64%), Positives = 44/57 (77%)
Frame = +1
Query: 352 AAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILLR 522
AA LL A Q VTFED+A++LTREEW LDP QRD+YR+VM ENYGN+VSL +R
Sbjct: 2 AATLLMAGSQAPVTFEDMAMYLTREEWRPLDPTQRDIYRDVMQENYGNVVSLDFEIR 58
>ref|NP_001192439.1| zinc finger protein with KRAB and SCAN domains 1 [Bos taurus].
Length = 563
Score = 73.6 bits (179), Expect = 2e-13
Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Frame = +1
Query: 157 GMEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEG 336
GM L + + S +P +P +++ + S P+ +Q A P VPA EG
Sbjct: 156 GMVPLDPVQESSSFDLPHEPTQSHFKHSSRKPRLLQPR--------ALPATHVPAPHPEG 207
Query: 337 SPGDQA--AALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLG 510
+P DQA +AL +A Q V ED+AV L EEWGC + +R+L R+ ENYGN++S G
Sbjct: 208 APRDQAMASALFSADSQAMVKIEDMAVSLILEEWGCQNLARRNLNRDTRQENYGNVISQG 267
Query: 511 ILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKR 636
R + S + SA GET + ++
Sbjct: 268 C-----ENRNENEESTSKAESAEDSASRGETAGKFQKDVGEK 304
>ref|XP_002698259.1| PREDICTED: zinc finger protein 197-like [Bos taurus].
Length = 563
Score = 73.6 bits (179), Expect = 2e-13
Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Frame = +1
Query: 157 GMEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEG 336
GM L + + S +P +P +++ + S P+ +Q A P VPA EG
Sbjct: 156 GMVPLDPVQESSSFDLPHEPTQSHFKHSSRKPRLLQPR--------ALPATHVPAPHPEG 207
Query: 337 SPGDQA--AALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLG 510
+P DQA +AL +A Q V ED+AV L EEWGC + +R+L R+ ENYGN++S G
Sbjct: 208 APRDQAMASALFSADSQAMVKIEDMAVSLILEEWGCQNLARRNLNRDTRQENYGNVISQG 267
Query: 511 ILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKR 636
R + S + SA GET + ++
Sbjct: 268 C-----ENRNENEESTSKAESAEDSASRGETAGKFQKDVGEK 304
>ref|XP_002687391.1| PREDICTED: zinc finger protein 286-like [Bos taurus].
Length = 683
Score = 73.6 bits (179), Expect = 2e-13
Identities = 62/160 (38%), Positives = 80/160 (50%), Gaps = 19/160 (11%)
Frame = +1
Query: 85 PGC-PRRDGRLARPSAR*WSLSSS---TGMEELSAQETAGSPRV--------PFQ----P 216
PGC P R G +A+ S ++ TG E ++ Q P+V P++ P
Sbjct: 243 PGCRPSRPGSQFGFAAKMLSEQTAALGTGWESMNVQVDRAEPQVERGSQEEGPWRTAPGP 302
Query: 217 LEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGSPGD--QAAALLTAMYQEFV 390
LE L PQ +Q+ A P VPA+P EGS GD AAALL A Q V
Sbjct: 303 LEHLCCDLEEEPQSLQEK--------AQSTPWVPAIPQEGSTGDWEMAAALLAAGSQGLV 354
Query: 391 TFEDVAVHLTREEWGCLDPVQRDLYRE-VMLENYGNLVSL 507
T +DV++ ++EEW LDP Q D Y E VM EN G +VSL
Sbjct: 355 TIKDVSLCFSQEEWRSLDPSQTDFYGEYVMQENCGIVVSL 394
>ref|XP_582187.4| PREDICTED: zinc finger protein 286-like [Bos taurus].
Length = 683
Score = 73.6 bits (179), Expect = 2e-13
Identities = 62/160 (38%), Positives = 80/160 (50%), Gaps = 19/160 (11%)
Frame = +1
Query: 85 PGC-PRRDGRLARPSAR*WSLSSS---TGMEELSAQETAGSPRV--------PFQ----P 216
PGC P R G +A+ S ++ TG E ++ Q P+V P++ P
Sbjct: 243 PGCRPSRPGSQFGFAAKMLSEQTAALGTGWESMNVQVDRAEPQVERGSQEEGPWRTAPGP 302
Query: 217 LEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGSPGD--QAAALLTAMYQEFV 390
LE L PQ +Q+ A P VPA+P EGS GD AAALL A Q V
Sbjct: 303 LEHLCCDLEEEPQSLQEK--------AQSTPWVPAIPQEGSTGDWEMAAALLAAGSQGLV 354
Query: 391 TFEDVAVHLTREEWGCLDPVQRDLYRE-VMLENYGNLVSL 507
T +DV++ ++EEW LDP Q D Y E VM EN G +VSL
Sbjct: 355 TIKDVSLCFSQEEWRSLDPSQTDFYGEYVMQENCGIVVSL 394
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,536,068
Number of extensions: 1323109
Number of successful extensions: 6330
Number of sequences better than 1.0e-05: 326
Number of HSP's gapped: 6224
Number of HSP's successfully gapped: 332
Length of query: 302
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 200
Effective length of database: 14,306,398
Effective search space: 2861279600
Effective search space used: 2861279600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004472
(907 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860628.1| PREDICTED: similar to zinc finger protein 655 i... 323 2e-88
Alignment gi|XP_860661.1| PREDICTED: similar to zinc finger protein 655 i... 182 4e-46
Alignment gi|XP_860598.1| PREDICTED: similar to zinc finger protein 655 i... 124 2e-28
Alignment gi|XP_848684.1| PREDICTED: similar to zinc finger protein 445 i... 85 1e-16
Alignment gi|XP_856565.1| PREDICTED: similar to Zinc finger protein 197 (... 77 3e-14
Alignment gi|XP_856517.1| PREDICTED: similar to Zinc finger protein 197 (... 77 3e-14
Alignment gi|XP_856479.1| PREDICTED: similar to Zinc finger protein 197 (... 77 3e-14
Alignment gi|XP_856435.1| PREDICTED: similar to Zinc finger protein 197 (... 77 3e-14
Alignment gi|XP_856392.1| PREDICTED: similar to Zinc finger protein 197 (... 77 3e-14
Alignment gi|XP_856350.1| PREDICTED: similar to Zinc finger protein 197 (... 77 3e-14
>ref|XP_860628.1| PREDICTED: similar to zinc finger protein 655 isoform b isoform 4
[Canis familiaris].
Length = 181
Score = 323 bits (827), Expect = 2e-88
Identities = 161/181 (88%), Positives = 166/181 (91%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGS 339
MEE+SAQE AGSP V FQ LE+ +EGLSP P F QDTDMEQ L GAPPVPQVPALPHEGS
Sbjct: 1 MEEISAQEAAGSPIVQFQSLESPSEGLSPEPLFEQDTDMEQELNGAPPVPQVPALPHEGS 60
Query: 340 PGDQAAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILL 519
PGDQAA LLTA YQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGN+VSLGILL
Sbjct: 61 PGDQAATLLTARYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNVVSLGILL 120
Query: 520 RLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSETPCPR 699
RLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWP+YRLPID ARP SETP PR
Sbjct: 121 RLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPRYRLPIDIARPRSETPFPR 180
Query: 700 L 702
L
Sbjct: 181 L 181
>ref|XP_860661.1| PREDICTED: similar to zinc finger protein 655 isoform b isoform 5
[Canis familiaris].
Length = 111
Score = 182 bits (462), Expect = 4e-46
Identities = 87/91 (95%), Positives = 91/91 (100%)
Frame = +1
Query: 373 MYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILLRLPTTRIHSVN 552
++QEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGN+VSLGILLRLPTTRIHSVN
Sbjct: 15 LFQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNVVSLGILLRLPTTRIHSVN 74
Query: 553 SCPALSHTQASAFSGETLAVLSAGISKRWPK 645
SCPALSHTQASAFSGETLAVLSAGISKRWP+
Sbjct: 75 SCPALSHTQASAFSGETLAVLSAGISKRWPR 105
>ref|XP_860598.1| PREDICTED: similar to zinc finger protein 655 isoform c isoform 3
[Canis familiaris].
Length = 110
Score = 124 bits (310), Expect = 2e-28
Identities = 61/65 (93%), Positives = 62/65 (95%)
Frame = +1
Query: 508 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSET 687
GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWP+YRLPID ARP SET
Sbjct: 46 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPRYRLPIDIARPRSET 105
Query: 688 PCPRL 702
P PRL
Sbjct: 106 PFPRL 110
Score = 63.5 bits (153), Expect = 3e-10
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTG 294
MEE+SAQE AGSP V FQ LE+ +EGLSP P F QDTDMEQ L G
Sbjct: 1 MEEISAQEAAGSPIVQFQSLESPSEGLSPEPLFEQDTDMEQELNG 45
>ref|XP_848684.1| PREDICTED: similar to zinc finger protein 445 isoform 1 [Canis
familiaris].
Length = 1015
Score = 84.7 bits (208), Expect = 1e-16
Identities = 61/141 (43%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Frame = +1
Query: 88 GCPRRDGRLARPSAR*WSLSSSTGMEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQD 267
G P RD LA+ W TG + S SP L Y E P +
Sbjct: 139 GTPWRDPALAQSPDVHWM---GTGALQASQIWPPASPLRSDSTLGDYLE-----PPYETG 190
Query: 268 TDMEQGLTGAPPVPQVPALPH-EGSPGDQAAALLTAMYQEFVTFEDVAVHLTREEWGCLD 444
PPV QVPAL EG PGD LLTA QE VTF+DV V +++EWG LD
Sbjct: 191 VCHFLARQSEPPVAQVPALSQREGCPGD----LLTAQPQEAVTFKDVEVTFSQDEWGWLD 246
Query: 445 PVQRDLYREVMLENYGNLVSL 507
P +R+LYR+VMLENY N+VSL
Sbjct: 247 PAERNLYRDVMLENYRNMVSL 267
>ref|XP_856565.1| PREDICTED: similar to Zinc finger protein 197 (ZnF20) isoform 24
[Canis familiaris].
Length = 1318
Score = 76.6 bits (187), Expect = 3e-14
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +1
Query: 301 PVPQVPALPHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREV 474
P P+ AL E +P +Q AL LTA QE V FE+V+V T EEW CL P+QR LY +V
Sbjct: 186 PAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWECLGPIQRALYWDV 245
Query: 475 MLENYGNLVSL 507
MLENYGN+ SL
Sbjct: 246 MLENYGNVTSL 256
>ref|XP_856517.1| PREDICTED: similar to Zinc finger protein 197 (ZnF20) isoform 23
[Canis familiaris].
Length = 1318
Score = 76.6 bits (187), Expect = 3e-14
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +1
Query: 301 PVPQVPALPHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREV 474
P P+ AL E +P +Q AL LTA QE V FE+V+V T EEW CL P+QR LY +V
Sbjct: 186 PAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWECLGPIQRALYWDV 245
Query: 475 MLENYGNLVSL 507
MLENYGN+ SL
Sbjct: 246 MLENYGNVTSL 256
>ref|XP_856479.1| PREDICTED: similar to Zinc finger protein 197 (ZnF20) isoform 22
[Canis familiaris].
Length = 1290
Score = 76.6 bits (187), Expect = 3e-14
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +1
Query: 301 PVPQVPALPHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREV 474
P P+ AL E +P +Q AL LTA QE V FE+V+V T EEW CL P+QR LY +V
Sbjct: 186 PAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWECLGPIQRALYWDV 245
Query: 475 MLENYGNLVSL 507
MLENYGN+ SL
Sbjct: 246 MLENYGNVTSL 256
>ref|XP_856435.1| PREDICTED: similar to Zinc finger protein 197 (ZnF20) isoform 21
[Canis familiaris].
Length = 1292
Score = 76.6 bits (187), Expect = 3e-14
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +1
Query: 301 PVPQVPALPHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREV 474
P P+ AL E +P +Q AL LTA QE V FE+V+V T EEW CL P+QR LY +V
Sbjct: 186 PAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWECLGPIQRALYWDV 245
Query: 475 MLENYGNLVSL 507
MLENYGN+ SL
Sbjct: 246 MLENYGNVTSL 256
>ref|XP_856392.1| PREDICTED: similar to Zinc finger protein 197 (ZnF20) isoform 20
[Canis familiaris].
Length = 1318
Score = 76.6 bits (187), Expect = 3e-14
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +1
Query: 301 PVPQVPALPHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREV 474
P P+ AL E +P +Q AL LTA QE V FE+V+V T EEW CL P+QR LY +V
Sbjct: 186 PAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWECLGPIQRALYWDV 245
Query: 475 MLENYGNLVSL 507
MLENYGN+ SL
Sbjct: 246 MLENYGNVTSL 256
>ref|XP_856350.1| PREDICTED: similar to Zinc finger protein 197 (ZnF20) isoform 19
[Canis familiaris].
Length = 1318
Score = 76.6 bits (187), Expect = 3e-14
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +1
Query: 301 PVPQVPALPHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREV 474
P P+ AL E +P +Q AL LTA QE V FE+V+V T EEW CL P+QR LY +V
Sbjct: 186 PAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWECLGPIQRALYWDV 245
Query: 475 MLENYGNLVSL 507
MLENYGN+ SL
Sbjct: 246 MLENYGNVTSL 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,289,367
Number of extensions: 1369795
Number of successful extensions: 6334
Number of sequences better than 1.0e-05: 195
Number of HSP's gapped: 6273
Number of HSP's successfully gapped: 198
Length of query: 302
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 200
Effective length of database: 15,474,232
Effective search space: 3094846400
Effective search space used: 3094846400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004472
(907 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076966.1| zinc finger protein 655 isoform b [Homo sapiens]. 330 1e-90
Alignment gi|NP_001078836.1| zinc finger protein 655 isoform b [Homo sapi... 330 1e-90
Alignment gi|NP_001009958.1| zinc finger protein 655 isoform c [Homo sapi... 128 6e-30
Alignment gi|NP_001078835.1| zinc finger protein 655 isoform c [Homo sapi... 128 6e-30
Alignment gi|NP_060185.2| zinc finger protein 3 isoform 1 [Homo sapiens]. 84 2e-16
Alignment gi|NP_116313.3| zinc finger protein 3 isoform 2 [Homo sapiens]. 84 2e-16
Alignment gi|NP_852466.1| zinc finger protein 445 [Homo sapiens]. 81 1e-15
Alignment gi|NP_079303.2| zinc finger protein 606 [Homo sapiens]. 80 3e-15
Alignment gi|NP_001020026.1| zinc finger protein 197 isoform 2 [Homo sapi... 80 3e-15
Alignment gi|NP_001010877.2| zinc finger protein 311 [Homo sapiens]. 78 1e-14
>ref|NP_076966.1| zinc finger protein 655 isoform b [Homo sapiens].
Length = 181
Score = 330 bits (845), Expect = 1e-90
Identities = 164/181 (90%), Positives = 168/181 (92%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGS 339
MEE+ AQE AGSPRV FQ LE +E LSP PQFVQDTDMEQGLTGAPPVPQVPALP EGS
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGAPPVPQVPALPREGS 60
Query: 340 PGDQAAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILL 519
PGDQAAALLTA YQEFVTFEDVAVHLTREEWG LDPVQRDLYREVMLENYGN+VSLGILL
Sbjct: 61 PGDQAAALLTARYQEFVTFEDVAVHLTREEWGYLDPVQRDLYREVMLENYGNVVSLGILL 120
Query: 520 RLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSETPCPR 699
RLPTTRIHSVNSCPALSHTQASAFSGETLAVL+AGISKRWPKYRLPID ARPCSETP PR
Sbjct: 121 RLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPR 180
Query: 700 L 702
L
Sbjct: 181 L 181
>ref|NP_001078836.1| zinc finger protein 655 isoform b [Homo sapiens].
Length = 181
Score = 330 bits (845), Expect = 1e-90
Identities = 164/181 (90%), Positives = 168/181 (92%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGS 339
MEE+ AQE AGSPRV FQ LE +E LSP PQFVQDTDMEQGLTGAPPVPQVPALP EGS
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGAPPVPQVPALPREGS 60
Query: 340 PGDQAAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILL 519
PGDQAAALLTA YQEFVTFEDVAVHLTREEWG LDPVQRDLYREVMLENYGN+VSLGILL
Sbjct: 61 PGDQAAALLTARYQEFVTFEDVAVHLTREEWGYLDPVQRDLYREVMLENYGNVVSLGILL 120
Query: 520 RLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSETPCPR 699
RLPTTRIHSVNSCPALSHTQASAFSGETLAVL+AGISKRWPKYRLPID ARPCSETP PR
Sbjct: 121 RLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPR 180
Query: 700 L 702
L
Sbjct: 181 L 181
>ref|NP_001009958.1| zinc finger protein 655 isoform c [Homo sapiens].
Length = 110
Score = 128 bits (322), Expect = 6e-30
Identities = 62/65 (95%), Positives = 63/65 (96%)
Frame = +1
Query: 508 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSET 687
GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVL+AGISKRWPKYRLPID ARPCSET
Sbjct: 46 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET 105
Query: 688 PCPRL 702
P PRL
Sbjct: 106 PFPRL 110
Score = 72.0 bits (175), Expect = 7e-13
Identities = 44/83 (53%), Positives = 49/83 (59%), Gaps = 12/83 (14%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGA----------PPVP 309
MEE+ AQE AGSPRV FQ LE +E LSP PQFVQDTDMEQGLTG V
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN 60
Query: 310 QVPALPHEGSP--GDQAAALLTA 372
PAL H + + A+LTA
Sbjct: 61 SCPALSHTQASAFSGETLAVLTA 83
>ref|NP_001078835.1| zinc finger protein 655 isoform c [Homo sapiens].
Length = 110
Score = 128 bits (322), Expect = 6e-30
Identities = 62/65 (95%), Positives = 63/65 (96%)
Frame = +1
Query: 508 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSET 687
GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVL+AGISKRWPKYRLPID ARPCSET
Sbjct: 46 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET 105
Query: 688 PCPRL 702
P PRL
Sbjct: 106 PFPRL 110
Score = 72.0 bits (175), Expect = 7e-13
Identities = 44/83 (53%), Positives = 49/83 (59%), Gaps = 12/83 (14%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGA----------PPVP 309
MEE+ AQE AGSPRV FQ LE +E LSP PQFVQDTDMEQGLTG V
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN 60
Query: 310 QVPALPHEGSP--GDQAAALLTA 372
PAL H + + A+LTA
Sbjct: 61 SCPALSHTQASAFSGETLAVLTA 83
>ref|NP_060185.2| zinc finger protein 3 isoform 1 [Homo sapiens].
Length = 131
Score = 84.0 bits (206), Expect = 2e-16
Identities = 49/99 (49%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Frame = +1
Query: 217 LEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGSPGDQ--AAALLTAMYQEFV 390
+E A+ +S PQ + D+ + +VPA + S GD+ AAALL A QE V
Sbjct: 1 METQADLVSQEPQALLDSALPS---------KVPAFSDKDSLGDEMLAAALLKAKSQELV 51
Query: 391 TFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSL 507
TFEDVAV+ R+EW L+P QRDLYR+VMLENYGN+ SL
Sbjct: 52 TFEDVAVYFIRKEWKRLEPAQRDLYRDVMLENYGNVFSL 90
>ref|NP_116313.3| zinc finger protein 3 isoform 2 [Homo sapiens].
Length = 446
Score = 84.0 bits (206), Expect = 2e-16
Identities = 49/99 (49%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Frame = +1
Query: 217 LEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGSPGDQ--AAALLTAMYQEFV 390
+E A+ +S PQ + D+ + +VPA + S GD+ AAALL A QE V
Sbjct: 1 METQADLVSQEPQALLDSALPS---------KVPAFSDKDSLGDEMLAAALLKAKSQELV 51
Query: 391 TFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSL 507
TFEDVAV+ R+EW L+P QRDLYR+VMLENYGN+ SL
Sbjct: 52 TFEDVAVYFIRKEWKRLEPAQRDLYRDVMLENYGNVFSL 90
>ref|NP_852466.1| zinc finger protein 445 [Homo sapiens].
Length = 1031
Score = 81.3 bits (199), Expect = 1e-15
Identities = 56/137 (40%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Frame = +1
Query: 106 GRLARPSAR*WSLSSSTGMEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQG 285
G A SA+ WSL+S P + A + L P P ++ D G
Sbjct: 157 GTGALRSAQIWSLAS------------------PLRSSSALGDHLEP-PYEIEARDFLAG 197
Query: 286 LTGAPPVPQVPAL-PHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQR 456
+ P Q+PAL P EG PGDQ LTA QE +TF+DV V +++EWG LD QR
Sbjct: 198 QSDTPAA-QMPALFPREGCPGDQVTPTRSLTAQLQETMTFKDVEVTFSQDEWGWLDSAQR 256
Query: 457 DLYREVMLENYGNLVSL 507
+LYR+VMLENY N+ SL
Sbjct: 257 NLYRDVMLENYRNMASL 273
>ref|NP_079303.2| zinc finger protein 606 [Homo sapiens].
Length = 792
Score = 79.7 bits (195), Expect = 3e-15
Identities = 48/95 (50%), Positives = 57/95 (60%), Gaps = 8/95 (8%)
Frame = +1
Query: 268 TDMEQGLTGAPP------VPQVPALPHEGS--PGDQAAALLTAMYQEFVTFEDVAVHLTR 423
TD G+T P PQ PA EGS G +A L A QE VTF+DVAV T+
Sbjct: 14 TDQSWGMTAVDPWASWALCPQYPAWHVEGSLEEGRRATGLPAAQVQEPVTFKDVAVDFTQ 73
Query: 424 EEWGCLDPVQRDLYREVMLENYGNLVSLGILLRLP 528
EEWG LD VQR LYR+VMLE YG+L+S+G + P
Sbjct: 74 EEWGQLDLVQRTLYRDVMLETYGHLLSVGNQIAKP 108
>ref|NP_001020026.1| zinc finger protein 197 isoform 2 [Homo sapiens].
Length = 267
Score = 79.7 bits (195), Expect = 3e-15
Identities = 41/72 (56%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Frame = +1
Query: 301 PVPQVPALPHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREV 474
P P+ AL E +P +Q AL LTA QE V FE+V+V T EEW CL P+QR LY +V
Sbjct: 186 PAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWACLGPIQRALYWDV 245
Query: 475 MLENYGNLVSLG 510
MLENYGN+ SLG
Sbjct: 246 MLENYGNVTSLG 257
>ref|NP_001010877.2| zinc finger protein 311 [Homo sapiens].
Length = 666
Score = 77.8 bits (190), Expect = 1e-14
Identities = 47/96 (48%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = +1
Query: 262 QDTDMEQGLTGAPPVPQVPALPHEGSPGD--QAAALLTAMYQEFVTFEDVAVHLTREEWG 435
QDT + Q + P P PA +GS G+ QA L + QE VTFEDVAV+ T EW
Sbjct: 22 QDTQLPQE-SALLPAPY-PAFTKDGSQGNLPQADITLMSQAQESVTFEDVAVNFTNREWQ 79
Query: 436 CLDPVQRDLYREVMLENYGNLVSLGILLRLPTTRIH 543
CL QR LY++VMLENYGN+VSLG P H
Sbjct: 80 CLTYAQRHLYKDVMLENYGNMVSLGFPFPKPPLISH 115
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,364,835
Number of extensions: 1325523
Number of successful extensions: 6716
Number of sequences better than 1.0e-05: 498
Number of HSP's gapped: 6668
Number of HSP's successfully gapped: 504
Length of query: 302
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 200
Effective length of database: 14,934,836
Effective search space: 2986967200
Effective search space used: 2986967200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004472
(907 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077427.1| zinc finger protein 655 isoform b [Mus muscu... 303 2e-82
Alignment gi|NP_062721.2| zinc finger protein 113 [Mus musculus]. 80 3e-15
Alignment gi|NP_080388.2| zinc finger protein 606 isoform 1 [Mus musculus]. 74 1e-13
Alignment gi|NP_775563.1| zinc finger protein 879 [Mus musculus]. 74 2e-13
Alignment gi|NP_083211.1| zinc finger protein 558 [Mus musculus]. 72 4e-13
Alignment gi|NP_898835.1| zinc finger protein 184 [Mus musculus]. 72 8e-13
Alignment gi|NP_573471.2| zinc finger protein 287 [Mus musculus]. 71 1e-12
Alignment gi|NP_776130.1| zinc finger protein 641 [Mus musculus]. 71 1e-12
Alignment gi|NP_001004190.2| zinc finger protein 560 [Mus musculus]. 70 3e-12
Alignment gi|NP_076239.1| zinc finger protein 84 [Mus musculus]. 69 4e-12
>ref|NP_001077427.1| zinc finger protein 655 isoform b [Mus musculus].
Length = 181
Score = 303 bits (775), Expect = 2e-82
Identities = 150/181 (82%), Positives = 163/181 (90%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGS 339
MEE+++QE A SPR FQPLE +E LSP +F+QDTDMEQG +GAPPVPQVPALPHEGS
Sbjct: 1 MEEVTSQEAAESPRGHFQPLENQSECLSPELRFLQDTDMEQGFSGAPPVPQVPALPHEGS 60
Query: 340 PGDQAAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILL 519
PGDQAAALLTA YQEFVTFEDVAVHLTREEWGCLDPVQR+LYREVMLENYGN+VSLGILL
Sbjct: 61 PGDQAAALLTARYQEFVTFEDVAVHLTREEWGCLDPVQRELYREVMLENYGNVVSLGILL 120
Query: 520 RLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSETPCPR 699
RLPTTRIH VNSCPALSHTQASAFSGETLAVL+AGI+KRWP+ RL I SA P +ETP PR
Sbjct: 121 RLPTTRIHCVNSCPALSHTQASAFSGETLAVLTAGITKRWPRDRLSIGSAHPSTETPFPR 180
Query: 700 L 702
L
Sbjct: 181 L 181
>ref|NP_062721.2| zinc finger protein 113 [Mus musculus].
Length = 439
Score = 79.7 bits (195), Expect = 3e-15
Identities = 42/68 (61%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Frame = +1
Query: 310 QVPALPHEGSPGDQ--AAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLE 483
+VP+ P + S GD+ AAALL A QE VTFEDVAV+ EW L+P QRDLYR+VMLE
Sbjct: 24 KVPSFPDKDSLGDKMLAAALLKAKSQELVTFEDVAVYFIWREWKRLEPAQRDLYRDVMLE 83
Query: 484 NYGNLVSL 507
NYGN+ SL
Sbjct: 84 NYGNVFSL 91
>ref|NP_080388.2| zinc finger protein 606 isoform 1 [Mus musculus].
Length = 794
Score = 74.3 bits (181), Expect = 1e-13
Identities = 46/106 (43%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Frame = +1
Query: 238 LSPTPQFVQDTDMEQGLTGAPP------VPQVPALPHEGSP---GDQAAALLTAMYQEFV 390
++P P + D G+ P PQ PA EGS G + L A +E V
Sbjct: 4 INPWPSWGTLMDQSWGMAAPEPSVSWALCPQDPAWHMEGSAEEDGRKTGGLPVAQVEEPV 63
Query: 391 TFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILLRLP 528
TF+DVAV T+EEWG LD VQR LYR+VMLE YG+L+S+G + P
Sbjct: 64 TFKDVAVAFTQEEWGQLDLVQRTLYRDVMLETYGHLLSVGNQIAKP 109
>ref|NP_775563.1| zinc finger protein 879 [Mus musculus].
Length = 563
Score = 73.6 bits (179), Expect = 2e-13
Identities = 38/56 (67%), Positives = 41/56 (73%)
Frame = +1
Query: 361 LLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILLRLP 528
LL A QE VTF DVAV +++EW LDP QR LYREVMLENY NLVSLGIL P
Sbjct: 5 LLPAQVQEPVTFRDVAVSFSQDEWLHLDPAQRTLYREVMLENYSNLVSLGILFSKP 60
>ref|NP_083211.1| zinc finger protein 558 [Mus musculus].
Length = 407
Score = 72.4 bits (176), Expect = 4e-13
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Frame = +1
Query: 316 PALPHEGSPGDQAAA--LLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENY 489
P P EG G + A LT++ +E V+FEDV V T+EEW LDP+QR LYR V LEN+
Sbjct: 17 PLSPEEGQMGKKGLATEFLTSLLEELVSFEDVTVQFTQEEWALLDPLQRTLYRNVTLENW 76
Query: 490 GNLVSLGILLRLP 528
NL SLG L P
Sbjct: 77 KNLASLGQHLDKP 89
>ref|NP_898835.1| zinc finger protein 184 [Mus musculus].
Length = 737
Score = 71.6 bits (174), Expect = 8e-13
Identities = 35/67 (52%), Positives = 48/67 (71%)
Frame = +1
Query: 328 HEGSPGDQAAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSL 507
HEG P LL + ++E VTF+DV V+ T+EEW LDP+QRDL+R+V LENY +LVS+
Sbjct: 13 HEGRP-----LLLPSSFRESVTFKDVVVNFTQEEWKHLDPIQRDLFRDVTLENYTHLVSI 67
Query: 508 GILLRLP 528
G+ + P
Sbjct: 68 GLQVSKP 74
>ref|NP_573471.2| zinc finger protein 287 [Mus musculus].
Length = 759
Score = 71.2 bits (173), Expect = 1e-12
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 9/84 (10%)
Frame = +1
Query: 307 PQVPALP---------HEGSPGDQAAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRD 459
PQ ALP H+ +P QA L + ++ VTF DVAV +T+E+W + PVQ++
Sbjct: 130 PQSSALPQDTPEDDPNHDPNPASQAGWLSDVVTKDLVTFNDVAVDITQEDWELMPPVQKE 189
Query: 460 LYREVMLENYGNLVSLGILLRLPT 531
LY+ V L+NY N+VSLG+ + PT
Sbjct: 190 LYKTVTLQNYWNMVSLGLTVYRPT 213
>ref|NP_776130.1| zinc finger protein 641 [Mus musculus].
Length = 422
Score = 71.2 bits (173), Expect = 1e-12
Identities = 50/109 (45%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Frame = +1
Query: 190 GSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGSPGD--QAAAL 363
GS R +PLE GL P +Q+ A VP VPA+P EG+ GD AAAL
Sbjct: 35 GSWRTAPRPLEHLHCGLEDEPLSLQEK--------ATSVPWVPAVPQEGNTGDWEMAAAL 86
Query: 364 LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYRE-VMLENYGNLVSL 507
L A Q VT +DV++ ++EEW LDP Q D Y E VM EN G +VSL
Sbjct: 87 LAAGSQGLVTIKDVSLCFSQEEWRSLDPSQTDFYGEYVMQENCGIVVSL 135
>ref|NP_001004190.2| zinc finger protein 560 [Mus musculus].
Length = 754
Score = 69.7 bits (169), Expect = 3e-12
Identities = 35/51 (68%), Positives = 39/51 (76%)
Frame = +1
Query: 367 TAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILL 519
T+ YQE VTFEDVAV T+EEW LD QR+LYREVMLENY NL +LG L
Sbjct: 34 TSSYQESVTFEDVAVDFTQEEWILLDTKQRNLYREVMLENYQNLATLGCQL 84
>ref|NP_076239.1| zinc finger protein 84 [Mus musculus].
Length = 559
Score = 69.3 bits (168), Expect = 4e-12
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1
Query: 364 LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILLRLPT 531
++ +++E V F DVAV +EEW CL P QR LYR+VMLENY N VSLG+ + P+
Sbjct: 6 VSTVFKELVVFRDVAVEFCKEEWECLGPEQRSLYRDVMLENYSNFVSLGLAISKPS 61
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,715,733
Number of extensions: 1087984
Number of successful extensions: 4884
Number of sequences better than 1.0e-05: 325
Number of HSP's gapped: 4827
Number of HSP's successfully gapped: 330
Length of query: 302
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 201
Effective length of database: 12,583,923
Effective search space: 2529368523
Effective search space used: 2529368523
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004472
(907 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354506.1| PREDICTED: zinc finger protein 655 [Sus scro... 366 e-102
Alignment gi|XP_003124351.1| PREDICTED: zinc finger protein 655 isoform 1... 94 1e-19
Alignment gi|XP_003124352.1| PREDICTED: zinc finger protein 655 isoform 2... 92 4e-19
Alignment gi|XP_003354513.1| PREDICTED: zinc finger protein with KRAB and... 87 2e-17
Alignment gi|XP_003356636.1| PREDICTED: zinc finger protein 311-like [Sus... 79 3e-15
Alignment gi|XP_003128287.2| PREDICTED: zinc finger protein 311, partial ... 79 3e-15
Alignment gi|XP_003355807.1| PREDICTED: zinc finger protein 23-like [Sus ... 78 8e-15
Alignment gi|XP_003358435.1| PREDICTED: zinc finger protein 445 [Sus scro... 77 1e-14
Alignment gi|XP_003358437.1| PREDICTED: zinc finger protein 197 isoform 2... 75 5e-14
Alignment gi|XP_003132207.2| PREDICTED: zinc finger protein 197 isoform 1... 75 5e-14
>ref|XP_003354506.1| PREDICTED: zinc finger protein 655 [Sus scrofa].
Length = 181
Score = 366 bits (940), Expect = e-102
Identities = 179/181 (98%), Positives = 179/181 (98%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGS 339
MEELSAQE AGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGS
Sbjct: 1 MEELSAQEAAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGS 60
Query: 340 PGDQAAALLTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILL 519
PGDQAAALLTA YQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILL
Sbjct: 61 PGDQAAALLTARYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILL 120
Query: 520 RLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSETPCPR 699
RLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSETPCPR
Sbjct: 121 RLPTTRIHSVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSETPCPR 180
Query: 700 L 702
L
Sbjct: 181 L 181
>ref|XP_003124351.1| PREDICTED: zinc finger protein 655 isoform 1 [Sus scrofa].
Length = 544
Score = 93.6 bits (231), Expect = 1e-19
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPV 306
MEELSAQE AGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTG P+
Sbjct: 1 MEELSAQEAAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGGFPL 49
>ref|XP_003124352.1| PREDICTED: zinc finger protein 655 isoform 2 [Sus scrofa].
Length = 509
Score = 92.0 bits (227), Expect = 4e-19
Identities = 44/45 (97%), Positives = 44/45 (97%)
Frame = +1
Query: 160 MEELSAQETAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTG 294
MEELSAQE AGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTG
Sbjct: 1 MEELSAQEAAGSPRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTG 45
>ref|XP_003354513.1| PREDICTED: zinc finger protein with KRAB and SCAN domains 1 isoform
2 [Sus scrofa].
Length = 447
Score = 86.7 bits (213), Expect = 2e-17
Identities = 51/99 (51%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Frame = +1
Query: 217 LEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGSPGDQ--AAALLTAMYQEFV 390
+E A+ +S PQ + L A P +VPA + S GD+ AAALL A QE V
Sbjct: 1 METQADRVSQEPQAL--------LESALPSSKVPAFSDKDSLGDEMLAAALLKAKAQELV 52
Query: 391 TFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSL 507
TFEDVAV+ R+EW L+P QRDLYR+VMLENYGN+ SL
Sbjct: 53 TFEDVAVYFIRKEWKRLEPAQRDLYRDVMLENYGNVFSL 91
>ref|XP_003356636.1| PREDICTED: zinc finger protein 311-like [Sus scrofa].
Length = 873
Score = 79.0 bits (193), Expect = 3e-15
Identities = 62/174 (35%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Frame = +1
Query: 190 GSPRVP-----FQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGSPGDQA 354
G P VP F P+ E P Q + D + AP PQ PA +GS G
Sbjct: 206 GPPWVPAPGCVFPPVMVSDESPGPLSQLLCIPDNKLLQERAPLSPQYPAFAKDGSQGTLP 265
Query: 355 AALLTAMYQ--EFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILLRLP 528
A +T M Q E +TFEDVAV+ + EW CL +Q+ LY++VMLENY N+VSLG P
Sbjct: 266 GANITLMSQAQESLTFEDVAVNFSFGEWQCLTHIQKRLYKDVMLENYRNMVSLGFPFPKP 325
Query: 529 TTRIH-SVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSET 687
+ H + P + Q F + V K WP+ + S + SET
Sbjct: 326 SLISHLEQETEPCVQDPQDREFLSCSHPV---SADKTWPENK-KASSEQEVSET 375
>ref|XP_003128287.2| PREDICTED: zinc finger protein 311, partial [Sus scrofa].
Length = 739
Score = 79.0 bits (193), Expect = 3e-15
Identities = 62/174 (35%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Frame = +1
Query: 190 GSPRVP-----FQPLEAYAEGLSPTPQFVQDTDMEQGLTGAPPVPQVPALPHEGSPGDQA 354
G P VP F P+ E P Q + D + AP PQ PA +GS G
Sbjct: 72 GPPWVPAPGCVFPPVMVSDESPGPLSQLLCIPDNKLLQERAPLSPQYPAFAKDGSQGTLP 131
Query: 355 AALLTAMYQ--EFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSLGILLRLP 528
A +T M Q E +TFEDVAV+ + EW CL +Q+ LY++VMLENY N+VSLG P
Sbjct: 132 GANITLMSQAQESLTFEDVAVNFSFGEWQCLTHIQKRLYKDVMLENYRNMVSLGFPFPKP 191
Query: 529 TTRIH-SVNSCPALSHTQASAFSGETLAVLSAGISKRWPKYRLPIDSARPCSET 687
+ H + P + Q F + V K WP+ + S + SET
Sbjct: 192 SLISHLEQETEPCVQDPQDREFLSCSHPV---SADKTWPENK-KASSEQEVSET 241
>ref|XP_003355807.1| PREDICTED: zinc finger protein 23-like [Sus scrofa].
Length = 779
Score = 77.8 bits (190), Expect = 8e-15
Identities = 46/85 (54%), Positives = 54/85 (63%), Gaps = 10/85 (11%)
Frame = +1
Query: 304 VPQVPALPHEGSPGDQ--AAALLTA--------MYQEFVTFEDVAVHLTREEWGCLDPVQ 453
V Q+P P S GDQ AA LLTA ++Q+ VTFEDVAV+ T+ EW L P Q
Sbjct: 66 VAQLPQAPLLLSEGDQVLAAMLLTAWLQGSRKLLFQKLVTFEDVAVYFTQTEWDGLSPAQ 125
Query: 454 RDLYREVMLENYGNLVSLGILLRLP 528
R LYR+VMLENYGN+ SLG L P
Sbjct: 126 RALYRDVMLENYGNVASLGFPLLKP 150
>ref|XP_003358435.1| PREDICTED: zinc finger protein 445 [Sus scrofa].
Length = 1027
Score = 77.0 bits (188), Expect = 1e-14
Identities = 48/107 (44%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Frame = +1
Query: 196 PRVPFQPLEAYAEGLSPTPQFVQDTDMEQGLTGAP--PVPQVPALPH-EGSPGDQAAALL 366
P P + A + L P + + L G P P QVP L EG PGDQ +
Sbjct: 169 PASPLRSGSALGDHLQPPCEI----GVRDFLAGQPDSPAAQVPTLSQREGCPGDQ----V 220
Query: 367 TAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREVMLENYGNLVSL 507
TA QE +TF+DV V +++EWG LD QR+LYR+VMLENYGN+ SL
Sbjct: 221 TAQPQEALTFKDVEVTFSQDEWGWLDASQRNLYRDVMLENYGNIASL 267
>ref|XP_003358437.1| PREDICTED: zinc finger protein 197 isoform 2 [Sus scrofa].
Length = 1032
Score = 75.1 bits (183), Expect = 5e-14
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +1
Query: 301 PVPQVPALPHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREV 474
P P+ AL E +P +Q AL LTA QE V FE+V+V T EEW CL P+QR LY +V
Sbjct: 190 PAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWACLGPIQRALYWDV 249
Query: 475 MLENYGNLVSL 507
MLENYG + SL
Sbjct: 250 MLENYGTVTSL 260
>ref|XP_003132207.2| PREDICTED: zinc finger protein 197 isoform 1 [Sus scrofa].
Length = 1297
Score = 75.1 bits (183), Expect = 5e-14
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +1
Query: 301 PVPQVPALPHEGSPGDQAAAL--LTAMYQEFVTFEDVAVHLTREEWGCLDPVQRDLYREV 474
P P+ AL E +P +Q AL LTA QE V FE+V+V T EEW CL P+QR LY +V
Sbjct: 190 PAPEASALSQEENPRNQLMALMLLTAQPQELVMFEEVSVCFTSEEWACLGPIQRALYWDV 249
Query: 475 MLENYGNLVSL 507
MLENYG + SL
Sbjct: 250 MLENYGTVTSL 260
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,201,589
Number of extensions: 859575
Number of successful extensions: 4182
Number of sequences better than 1.0e-05: 144
Number of HSP's gapped: 4128
Number of HSP's successfully gapped: 148
Length of query: 302
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,904,026
Effective search space: 1816421304
Effective search space used: 1816421304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004472
(907 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 755 0.0
Sscrofa_Chr06 62 6e-07
>Sscrofa_Chr03
|| Length = 144787322
Score = 755 bits (381), Expect = 0.0
Identities = 397/401 (99%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 508 ggcatacttctccgccttcccaccacccggattcatagtgtgaattcctgcccggccctg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6544595 ggcatacttctccgccttcccaccacccggattcatagtgtgaattcctgcccggccctg 6544536
Query: 568 agtcatacccaggcaagtgctttctctggagaaacacttgcagttctttcagcaggaatc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6544535 agtcatacccaggcaagtgctttctctggagaaacacttgcagttctttcagcaggaatc 6544476
Query: 628 tccaagagatggcccaagtatcggctccccatcgatagtgctcgtccctgctcggaaact 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6544475 tccaagagatggcccaagtatcggctccccatcgatagtgctcgtccctgctcggaaact 6544416
Query: 688 ccttgtccacgattgtaacattgcagctcctcaaatgacctttgataagtttcaaagggc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6544415 ccttgtccacgattgtaacattgcagctcctcaaatgacctttgataagtttcaaagggc 6544356
Query: 748 caaggaagtcttccattgcaaccagcattttgagccctgaattctgagttcattcagaag 807
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6544355 cacggaagccttccgttgcaaccagcattttgagccctgaattctgagttcattcagaag 6544296
Query: 808 ccgtggttggtggtcctctccttgtgttctcagaaaccgccaagttcaactccagctctt 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6544295 ccgtggttggtggtcctctccttgtgttctcagaaaccgccaagttcaactccagctctt 6544236
Query: 868 cagtcgtgatctggtcgtgtta-tttagaatgtgaacgtgc 907
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6544235 cagtcgtgatctggtcgtgttattttagaatgtgaacgtgc 6544195
Score = 317 bits (160), Expect = 6e-84
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 132 gtgatggtccttgtcctccagcacagggatggaggaactatcggcccaggaaacagcagg 191
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6547856 gtgatggtccttgtcctccagcacagggatggaggaactatcggcccaggaagcagcagg 6547797
Query: 192 atctccaagggtcccgtttcagcctttggaggcctacgctgagggtctgtccccaacacc 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6547796 atctccaagggtcccgtttcagcctttggaggcctacgctgagggtctgtccccaacacc 6547737
Query: 252 tcagttcgtgcaggacaccgacatggagcaggggctcactgggg 295
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6547736 tcagttcgtgcaggacaccgacatggagcaggggctcactgggg 6547693
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 1 caccgcccccggaagtgccaccgagaagcgccggcctccgagcgggctagagcgaccccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6548970 caccgcccccggaagtgccaccgagaagcgccggcctccgagcgggctagagcgaccccc 6548911
Query: 61 gaaaggcaaggccggccccgcgagccagggtgtccgcgacgggacggccgcctggcccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6548910 gaaaggcaaggccggccccgcgagccagggtgtccgcgacgggacggccgcctggcccgc 6548851
Query: 121 ccctccgctcgg 132
||||||||||||
Sbjct: 6548850 ccctccgctcgg 6548839
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 379 caggagtttgtgacattcgaggatgtggctgtgcaccttactcgagaggaatggggatgc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6545727 caggagtttgtgacattcgaggatgtggctgtgcaccttactcgagaggaatggggatgc 6545668
Query: 439 ctggaccccgttcagagggatctctaccgagaagtgatgttagagaattatgggaacctg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6545667 ctggaccccgttcagagggatctctaccgagaagtgatgttagagaattatgggaacctg 6545608
Query: 499 gtctcactggg 509
|||||||||||
Sbjct: 6545607 gtctcactggg 6545597
Score = 167 bits (84), Expect = 1e-38
Identities = 87/88 (98%)
Strand = Plus / Minus
Query: 295 gctccacctgttccccaggtgcctgctcttccccacgagggaagcccaggagaccaggca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6546198 gctccacctgttccccaggtgcctgctcttccccacgagggaagcccaggagaccaggca 6546139
Query: 355 gctgcgctcttgacagccatgtaccagg 382
||||||||||||||||||| ||||||||
Sbjct: 6546138 gctgcgctcttgacagccaggtaccagg 6546111
>Sscrofa_Chr06
|| Length = 157765593
Score = 61.9 bits (31), Expect = 6e-07
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 388 gtgacattcgaggatgtggctgtgcaccttactcgagaggaatggggatgcctggacccc 447
||||||||| ||||||||||||| || |||| | ||||| |||| | |||||||||
Sbjct: 41733898 gtgacattcagggatgtggctgtggactttacgcaggaggagtgggaacatctggacccc 41733957
Query: 448 gttcagagggatctctaccgagaagtgatgttagagaattatgggaa 494
||||||| | || ||| ||||||||||||| ||||||||||||||
Sbjct: 41733958 tgtcagaggcacctatacagagaagtgatgttggagaattatgggaa 41734004
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,040,549
Number of extensions: 141
Number of successful extensions: 141
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 6
Length of query: 907
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 886
Effective length of database: 2,808,413,156
Effective search space: 2488254056216
Effective search space used: 2488254056216
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)