Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004478
(1123 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,364,030
Number of extensions: 1677707
Number of successful extensions: 6331
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 6308
Number of HSP's successfully gapped: 0
Length of query: 374
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,240,222
Effective search space: 3844859940
Effective search space used: 3844859940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004478
(1123 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,422,080
Number of extensions: 1719131
Number of successful extensions: 6280
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 6260
Number of HSP's successfully gapped: 0
Length of query: 374
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 270
Effective length of database: 15,407,560
Effective search space: 4160041200
Effective search space used: 4160041200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004478
(1123 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_775826.2| peroxisomal leader peptide-processing protease ... 310 1e-84
>ref|NP_775826.2| peroxisomal leader peptide-processing protease isoform a [Homo
sapiens].
Length = 566
Score = 310 bits (795), Expect = 1e-84
Identities = 154/178 (86%), Positives = 161/178 (90%)
Frame = +1
Query: 49 RGAIIWGHVVFATQETSPYDIAVVSLEEDLEGVPIPVPAEDFHEGEAVTVVGFGVFGQAC 228
+ IWG VVFATQET PYDIAVVSLEEDL+ VPIPVPAE FHEGEAV+VVGFGVFGQ+C
Sbjct: 389 KSVAIWGRVVFATQETCPYDIAVVSLEEDLDDVPIPVPAEHFHEGEAVSVVGFGVFGQSC 448
Query: 229 GPSVTSGILSAVVQVDDTPVMLQTTCAVHGGSSGGPLFSTCSGNLLGIIASNTRDNNTGA 408
GPSVTSGILSAVVQV+ TPVMLQTTCAVH GSSGGPLFS SGNLLGII SNTRDNNTGA
Sbjct: 449 GPSVTSGILSAVVQVNGTPVMLQTTCAVHSGSSGGPLFSNHSGNLLGIITSNTRDNNTGA 508
Query: 409 TYPHLNFSIPITVLQPALQQYHQTGDLGGLRQLDRATEPVRVVWRLQQPQTEAPRSKL 582
TYPHLNFSIPITVLQPALQQY QT DLGGLR+LDRA EPVRVVWRLQ+P EAPRSKL
Sbjct: 509 TYPHLNFSIPITVLQPALQQYSQTQDLGGLRELDRAAEPVRVVWRLQRPLAEAPRSKL 566
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,325,201
Number of extensions: 1680843
Number of successful extensions: 6402
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6382
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,868,908
Effective search space: 4014605160
Effective search space used: 4014605160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004478
(1123 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082188.1| peroxisomal leader peptide-processing protease ... 307 1e-83
>ref|NP_082188.1| peroxisomal leader peptide-processing protease [Mus musculus].
Length = 568
Score = 307 bits (786), Expect = 1e-83
Identities = 150/178 (84%), Positives = 162/178 (91%)
Frame = +1
Query: 49 RGAIIWGHVVFATQETSPYDIAVVSLEEDLEGVPIPVPAEDFHEGEAVTVVGFGVFGQAC 228
+ IWG VVFATQETSPYDIAVVSLEE+L GVP PVPA FHEGE V+VVGFGVFGQAC
Sbjct: 391 KNVAIWGQVVFATQETSPYDIAVVSLEEELNGVPTPVPAGHFHEGEPVSVVGFGVFGQAC 450
Query: 229 GPSVTSGILSAVVQVDDTPVMLQTTCAVHGGSSGGPLFSTCSGNLLGIIASNTRDNNTGA 408
GPSVTSGILSAVV+VD +PVMLQTTCAVHGGSSGGPLFS+ SG+LLGI+ASNTRDNNTGA
Sbjct: 451 GPSVTSGILSAVVRVDGSPVMLQTTCAVHGGSSGGPLFSSGSGDLLGIVASNTRDNNTGA 510
Query: 409 TYPHLNFSIPITVLQPALQQYHQTGDLGGLRQLDRATEPVRVVWRLQQPQTEAPRSKL 582
TYPHLNFSIPITVLQPAL+QY QTGDLGGLR+LD TEPVRVVWRLQ+P +E PRSKL
Sbjct: 511 TYPHLNFSIPITVLQPALKQYSQTGDLGGLRELDHTTEPVRVVWRLQRPLSEVPRSKL 568
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,057,020
Number of extensions: 1387806
Number of successful extensions: 5038
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5015
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 271
Effective length of database: 12,523,851
Effective search space: 3393963621
Effective search space used: 3393963621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004478
(1123 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927378.2| PREDICTED: peroxisomal leader peptide-proces... 360 1e-99
>ref|XP_001927378.2| PREDICTED: peroxisomal leader peptide-processing protease isoform 1
[Sus scrofa].
Length = 568
Score = 360 bits (923), Expect = 1e-99
Identities = 176/178 (98%), Positives = 178/178 (100%)
Frame = +1
Query: 49 RGAIIWGHVVFATQETSPYDIAVVSLEEDLEGVPIPVPAEDFHEGEAVTVVGFGVFGQAC 228
+GAIIWGHVVFATQETSPYDIAVVSLEEDLEGVPIPVPAEDFHEGEAVTVVGFGVFGQAC
Sbjct: 391 KGAIIWGHVVFATQETSPYDIAVVSLEEDLEGVPIPVPAEDFHEGEAVTVVGFGVFGQAC 450
Query: 229 GPSVTSGILSAVVQVDDTPVMLQTTCAVHGGSSGGPLFSTCSGNLLGIIASNTRDNNTGA 408
GPSVTSGILSAVVQVDDTPVMLQTTCAVHGGSSGGPLFSTCSGNLLGIIASNTRDNNTGA
Sbjct: 451 GPSVTSGILSAVVQVDDTPVMLQTTCAVHGGSSGGPLFSTCSGNLLGIIASNTRDNNTGA 510
Query: 409 TYPHLNFSIPITVLQPALQQYHQTGDLGGLRQLDRATEPVRVVWRLQQPQTEAPRSKL 582
TYPHLNFSIPITVLQPALQ+YHQTGDLGGLRQLDRATEPVRVVWRLQQPQTEAPRSKL
Sbjct: 511 TYPHLNFSIPITVLQPALQRYHQTGDLGGLRQLDRATEPVRVVWRLQQPQTEAPRSKL 568
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,198,669
Number of extensions: 1086481
Number of successful extensions: 4214
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4208
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,854,232
Effective search space: 2426059568
Effective search space used: 2426059568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004478
(1123 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1455 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1455 bits (734), Expect = 0.0
Identities = 752/758 (99%)
Strand = Plus / Minus
Query: 366 aggcatcatcgccagcaacacccgggacaataacactggggccacctacccccacctgaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78999827 aggcatcatcgccagcaacacccgggacaataacactggggccacctacccccacctgaa 78999768
Query: 426 cttcagcattcccatcacggtgctccagccggccctgcagcagtaccatcagacaggaga 485
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 78999767 cttcagcattcccatcacggtgctccagccggccctgcagcggtaccatcagacaggaga 78999708
Query: 486 tctgggcggcctccggcagctggaccgcgccactgagccagtcagggtggtgtggcggct 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78999707 tctgggcggcctccggcagctggaccgcgccactgagccagtcagggtggtgtggcggct 78999648
Query: 546 gcagcaaccccagacagaggccccacggagcaagctctgaagctgtgtctcccctctgga 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78999647 gcagcaaccccagacagaggccccacggagcaagctctgaagctgtgtctcccctctgga 78999588
Query: 606 gagaagagcagccactttatgccacagggagtgctaaagctggtgacctcagaatcctga 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78999587 gagaagagcagccactttatgccacagggagtgctaaagctggtgacctcagaatcctga 78999528
Query: 666 cccagcacgctgcagctgggctgcctcccgtcgccagccctggagtctggatcaaacttc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78999527 cccagcacgctgcagctgggctgcctcccgtcgccagccctggagtctggatcaaacttc 78999468
Query: 726 tcattagcctctatgggtctctaacctagtcgcccatttgaggggtgctttctcgagccc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78999467 tcattagcctctatgggtctctaacctagtcgcccatttgaggggtgctttctcgagccc 78999408
Query: 786 ccatctctctctgtcccctgacactagactcagctctgttctctccccttctggggagcc 845
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 78999407 ccatctctctctgtcccctgacactagactcagctctgttttctccccttctggggaacc 78999348
Query: 846 cagaatgactgtacaacagccctggtcctgacagatggatgggagttggaaggcaggtcc 905
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 78999347 cagaatgactgtacaacagccctggtcctgacagacggatgggagttggaaggcaggtcc 78999288
Query: 906 ggccctgggtttgagtctgctccctgtctcctgatggccaccggccgcctggagcagttg 965
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78999287 agccctgggtttgagtctgctccctgtctcctgatggccaccggccgcctggagcagttg 78999228
Query: 966 cttcctgcaccctgagctcctctctgctctgggtcagaatggggctggcagagcactggg 1025
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 78999227 cttcctgcaccctgagctcctcgctgctctgggtcagaatggggctggcagagcactggg 78999168
Query: 1026 gcttcctcagaaaaatgggcacagaggccctgttctgaagaccagaggtgaaaggagggc 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78999167 gcttcctcagaaaaatgggcacagaggccctgttctgaagaccagaggtgaaaggagggc 78999108
Query: 1086 atcttcctgttccgctagaccagaggcggtggcgtgcc 1123
||||||||||||||||||||||||||||||||||||||
Sbjct: 78999107 atcttcctgttccgctagaccagaggcggtggcgtgcc 78999070
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 180 aggcgaggccgtcacggtggtgggcttcggcgtcttcggccaggcttgtgggccctcagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79003826 aggcgaggccgtcacggtggtgggcttcggcgtcttcggccaggcttgtgggccctcagt 79003767
Query: 240 gacctcaggcatcctatcggctgtggtgcaagtagatgacacaccagttatgctacagac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79003766 gacctcaggcatcctatcggctgtggtgcaagtagatgacacaccagttatgctacagac 79003707
Query: 300 cacatgtgccgtgcatggtggctccagcgggggacctctcttctccacctgctctgggaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79003706 cacatgtgccgtgcatggtggctccagcgggggacctctcttctccacctgctctgggaa 79003647
Query: 360 cctcttagg 368
|||||||||
Sbjct: 79003646 cctcttagg 79003638
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 48 caggggtgccataatctggggccacgtggtgtttgccacccaggagacatctccctatga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79004892 caggggtgccataatctggggccacgtggtgtttgccacccaggagacatctccctatga 79004833
Query: 108 catagcagtggtgagcctggaggaggacctagagggtgtccccatacctgttccagctga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79004832 catagcagtggtgagcctggaggaggacctagagggtgtccccatacctgttccagctga 79004773
Query: 168 ggatttccatgaagg 182
|||||||||||||||
Sbjct: 79004772 ggatttccatgaagg 79004758
Score = 101 bits (51), Expect = 8e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 1 tccggccggacgaagaagactggcgacaagtgcctgcacctctccttcagg 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79008174 tccggccggacgaagaagactggcgacaagtgcctgcacctctccttcagg 79008124
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,910,871
Number of extensions: 221
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 4
Length of query: 1123
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1102
Effective length of database: 2,808,413,156
Effective search space: 3094871297912
Effective search space used: 3094871297912
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)