Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004482
(997 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178299.1| vinculin [Bos taurus]. 402 e-112
Alignment gi|XP_002698929.1| PREDICTED: vinculin isoform 2 [Bos taurus]. 402 e-112
Alignment gi|XP_002698928.1| PREDICTED: vinculin isoform 1 [Bos taurus]. 402 e-112
Alignment gi|XP_001790345.2| PREDICTED: vinculin isoform 2 [Bos taurus]. 402 e-112
Alignment gi|NP_001030443.1| catenin alpha-1 [Bos taurus]. 75 7e-14
Alignment gi|XP_002689260.1| PREDICTED: catenin, alpha 1-like, partial [B... 71 2e-12
Alignment gi|NP_001095580.1| catenin, alpha 2 [Bos taurus]. 66 4e-11
Alignment gi|NP_001073106.3| catenin, alpha 3 [Bos taurus]. 60 2e-09
>ref|NP_001178299.1| vinculin [Bos taurus].
Length = 1134
Score = 402 bits (1032), Expect = e-112
Identities = 207/209 (99%), Positives = 208/209 (99%)
Frame = +1
Query: 97 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 276
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
Sbjct: 1 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 60
Query: 277 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 456
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
Sbjct: 61 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 120
Query: 457 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 636
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
Sbjct: 121 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 180
Query: 637 ELTHQEHRVMLVNSMNTVKELLPVLISGI 723
ELTHQEHRVMLVNSMNTVKELLPVLIS +
Sbjct: 181 ELTHQEHRVMLVNSMNTVKELLPVLISAM 209
>ref|XP_002698929.1| PREDICTED: vinculin isoform 2 [Bos taurus].
Length = 1066
Score = 402 bits (1032), Expect = e-112
Identities = 207/209 (99%), Positives = 208/209 (99%)
Frame = +1
Query: 97 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 276
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
Sbjct: 1 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 60
Query: 277 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 456
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
Sbjct: 61 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 120
Query: 457 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 636
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
Sbjct: 121 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 180
Query: 637 ELTHQEHRVMLVNSMNTVKELLPVLISGI 723
ELTHQEHRVMLVNSMNTVKELLPVLIS +
Sbjct: 181 ELTHQEHRVMLVNSMNTVKELLPVLISAM 209
>ref|XP_002698928.1| PREDICTED: vinculin isoform 1 [Bos taurus].
Length = 1134
Score = 402 bits (1032), Expect = e-112
Identities = 207/209 (99%), Positives = 208/209 (99%)
Frame = +1
Query: 97 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 276
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
Sbjct: 1 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 60
Query: 277 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 456
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
Sbjct: 61 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 120
Query: 457 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 636
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
Sbjct: 121 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 180
Query: 637 ELTHQEHRVMLVNSMNTVKELLPVLISGI 723
ELTHQEHRVMLVNSMNTVKELLPVLIS +
Sbjct: 181 ELTHQEHRVMLVNSMNTVKELLPVLISAM 209
>ref|XP_001790345.2| PREDICTED: vinculin isoform 2 [Bos taurus].
Length = 1066
Score = 402 bits (1032), Expect = e-112
Identities = 207/209 (99%), Positives = 208/209 (99%)
Frame = +1
Query: 97 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 276
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
Sbjct: 1 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 60
Query: 277 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 456
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
Sbjct: 61 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 120
Query: 457 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 636
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
Sbjct: 121 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 180
Query: 637 ELTHQEHRVMLVNSMNTVKELLPVLISGI 723
ELTHQEHRVMLVNSMNTVKELLPVLIS +
Sbjct: 181 ELTHQEHRVMLVNSMNTVKELLPVLISAM 209
>ref|NP_001030443.1| catenin alpha-1 [Bos taurus].
Length = 906
Score = 75.5 bits (184), Expect = 7e-14
Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 2/202 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T +E +LEP+ Q++ LV + +G + K A V A+V+ A N + G + +
Sbjct: 22 TLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASVEQATENFLEKGDKIAK 81
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
E Q LK ++ A V C + AA DP S R ++ +R +LS + LL
Sbjct: 82 --ESQFLKEELVAAVEDVRKQCDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLL 139
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V K++ K + + + T +DL K L P + K+ M +RQQEL
Sbjct: 140 ILADMADVYKLLVQLKLVEDGILKLRNAGTEQDLGIQYKALKPEVDKLNIMAAKRQQELK 199
Query: 646 HQEHRVMLVNSMNTVKELLPVL 711
HR + + +++ +P+L
Sbjct: 200 DVGHRDQMAAARGILQKNVPIL 221
>ref|XP_002689260.1| PREDICTED: catenin, alpha 1-like, partial [Bos taurus].
Length = 559
Score = 70.9 bits (172), Expect = 2e-12
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 2/202 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T +E +LEP+ Q++ LV + +G + K A V A+V+ A N + G + +
Sbjct: 22 TLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASVEQATENFLEKGDKIAK 81
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
E Q LK ++ A V + AA DP S R ++ +R +LS + LL
Sbjct: 82 --ESQFLKEELVAAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLL 139
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V K++ K + + + T +DL K L P + K+ M +RQQEL
Sbjct: 140 ILADMADVYKLLVQLKLVEDGILKLRNAGTEQDLGIQYKALKPEVDKLNIMAAKRQQELK 199
Query: 646 HQEHRVMLVNSMNTVKELLPVL 711
HR + + +++ +P+L
Sbjct: 200 DVGHRDQMAAARGILQKNVPIL 221
>ref|NP_001095580.1| catenin, alpha 2 [Bos taurus].
Length = 447
Score = 66.2 bits (160), Expect = 4e-11
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 2/197 (1%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T T+E +LEP+ Q++ LV +G K A V A+V+ A N + G++ +
Sbjct: 21 TLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAK 80
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
++D LK ++ A V + A+ DP S R ++ +R +LS + LL
Sbjct: 81 ESQD--LKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLL 138
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V +++ K + E L + +DL K G M K+ + RQQEL
Sbjct: 139 ILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELK 198
Query: 646 HQEHRVMLVNSMNTVKE 696
R + + +K+
Sbjct: 199 DPHCRDEMAAARGALKK 215
>ref|NP_001073106.3| catenin, alpha 3 [Bos taurus].
Length = 895
Score = 60.5 bits (145), Expect = 2e-09
Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 1/203 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV-AAVQAAVSNLVRVGKETVQT 288
T T+E +LEP+ Q++ LV + K + A+V+ A NL+ G++ Q
Sbjct: 20 TFTVEKLLEPLIIQVTTLVNCPQNPSNRKKRRSKRARVLLASVEEATWNLLDKGEKIAQ- 78
Query: 289 TEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLL 468
E +LK ++ A +V L +A+ DP +P R+ ++ +R +L+ + LL+
Sbjct: 79 -EATVLKEELTGALEEVRKESEALKVSAERFADDPCYLPKREAVVQAARALLAAVTRLLV 137
Query: 469 TFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTH 648
D +V +++ + V DL + LG + + + +RQQ+L
Sbjct: 138 LADMIDVMCLLQHVSAFQRTFESLKNVSNKSDLKKTYQKLGKELENLDYLAFKRQQDLKS 197
Query: 649 QEHRVMLVNSMNTVKELLPVLIS 717
R + + ++KE P+L S
Sbjct: 198 PNQRDEIAGARASLKENSPILHS 220
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,212,771
Number of extensions: 648882
Number of successful extensions: 2075
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2070
Number of HSP's successfully gapped: 8
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004482
(997 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536395.2| PREDICTED: similar to Vinculin (Metavinculin) [... 296 2e-80
Alignment gi|XP_865787.1| PREDICTED: similar to catenin, alpha 2 isoform ... 65 8e-11
Alignment gi|XP_540203.2| PREDICTED: similar to catenin, alpha 2 isoform ... 65 8e-11
Alignment gi|XP_546126.2| PREDICTED: similar to catenin, alpha 3 isoform ... 60 4e-09
Alignment gi|XP_849654.1| PREDICTED: similar to catenin, alpha 3 isoform ... 60 4e-09
Alignment gi|XP_859361.1| PREDICTED: similar to catenin, alpha 3 isoform ... 60 4e-09
>ref|XP_536395.2| PREDICTED: similar to Vinculin (Metavinculin) [Canis familiaris].
Length = 799
Score = 296 bits (759), Expect = 2e-80
Identities = 155/165 (93%), Positives = 157/165 (95%)
Frame = +1
Query: 229 AAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPA 408
A + AA S VGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPA
Sbjct: 23 AHIVAAPSFREIVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPA 82
Query: 409 RDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNL 588
RDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNL
Sbjct: 83 RDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNL 142
Query: 589 GPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISGI 723
GPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLIS +
Sbjct: 143 GPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAM 187
>ref|XP_865787.1| PREDICTED: similar to catenin, alpha 2 isoform 3 [Canis
familiaris].
Length = 905
Score = 65.5 bits (158), Expect = 8e-11
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 2/197 (1%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T T+E +LEP+ Q++ LV +G K A V A+V+ A N + G++ +
Sbjct: 21 TLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLDKGEQIAK 80
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
++D LK ++ A V + A+ DP S R ++ +R +LS + LL
Sbjct: 81 ESQD--LKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLL 138
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V +++ K + E L + +DL K G M K+ + RQQEL
Sbjct: 139 ILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELK 198
Query: 646 HQEHRVMLVNSMNTVKE 696
R + + +K+
Sbjct: 199 DPHCRDEMAAARGALKK 215
>ref|XP_540203.2| PREDICTED: similar to catenin, alpha 2 isoform 1 [Canis
familiaris].
Length = 909
Score = 65.5 bits (158), Expect = 8e-11
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 2/197 (1%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T T+E +LEP+ Q++ LV +G K A V A+V+ A N + G++ +
Sbjct: 21 TLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLDKGEQIAK 80
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
++D LK ++ A V + A+ DP S R ++ +R +LS + LL
Sbjct: 81 ESQD--LKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLL 138
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V +++ K + E L + +DL K G M K+ + RQQEL
Sbjct: 139 ILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELK 198
Query: 646 HQEHRVMLVNSMNTVKE 696
R + + +K+
Sbjct: 199 DPHCRDEMAAARGALKK 215
>ref|XP_546126.2| PREDICTED: similar to catenin, alpha 3 isoform 2 [Canis
familiaris].
Length = 895
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 1/203 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV-AAVQAAVSNLVRVGKETVQT 288
T T+E +LEP+ Q++ LV + K + A+V+ A NL+ G++ Q
Sbjct: 20 TFTVEKLLEPLIIQVTTLVNCPQNPSNRKKGRSKRARVLLASVEEATWNLLDKGEKIAQ- 78
Query: 289 TEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLL 468
E +LK ++ A +V L +A+ DP +P R+ ++ +R +L+ + LL+
Sbjct: 79 -EATVLKEELASALEEVRKESETLKVSAERFADDPCYLPKREAVVQAARALLAAVTRLLI 137
Query: 469 TFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTH 648
D +V +++ + V DL + LG + + + +RQQ+L
Sbjct: 138 LADMIDVMCLLQHVSAFQRTFESLKNVSNKSDLQKTYQKLGKELENLDYLAFKRQQDLKS 197
Query: 649 QEHRVMLVNSMNTVKELLPVLIS 717
R + + ++K+ P+L S
Sbjct: 198 PNQRDEIAGARASLKQNSPLLHS 220
>ref|XP_849654.1| PREDICTED: similar to catenin, alpha 3 isoform 3 [Canis
familiaris].
Length = 895
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 1/203 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV-AAVQAAVSNLVRVGKETVQT 288
T T+E +LEP+ Q++ LV + K + A+V+ A NL+ G++ Q
Sbjct: 20 TFTVEKLLEPLIIQVTTLVNCPQNPSNRKKGRSKRARVLLASVEEATWNLLDKGEKIAQ- 78
Query: 289 TEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLL 468
E +LK ++ A +V L +A+ DP +P R+ ++ +R +L+ + LL+
Sbjct: 79 -EATVLKEELASALEEVRKESETLKVSAERFADDPCYLPKREAVVQAARALLAAVTRLLI 137
Query: 469 TFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTH 648
D +V +++ + V DL + LG + + + +RQQ+L
Sbjct: 138 LADMIDVMCLLQHVSAFQRTFESLKNVSNKSDLQKTYQKLGKELENLDYLAFKRQQDLKS 197
Query: 649 QEHRVMLVNSMNTVKELLPVLIS 717
R + + ++K+ P+L S
Sbjct: 198 PNQRDEIAGARASLKQNSPLLHS 220
>ref|XP_859361.1| PREDICTED: similar to catenin, alpha 3 isoform 4 [Canis
familiaris].
Length = 904
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 1/203 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV-AAVQAAVSNLVRVGKETVQT 288
T T+E +LEP+ Q++ LV + K + A+V+ A NL+ G++ Q
Sbjct: 20 TFTVEKLLEPLIIQVTTLVNCPQNPSNRKKGRSKRARVLLASVEEATWNLLDKGEKIAQ- 78
Query: 289 TEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLL 468
E +LK ++ A +V L +A+ DP +P R+ ++ +R +L+ + LL+
Sbjct: 79 -EATVLKEELASALEEVRKESETLKVSAERFADDPCYLPKREAVVQAARALLAAVTRLLI 137
Query: 469 TFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTH 648
D +V +++ + V DL + LG + + + +RQQ+L
Sbjct: 138 LADMIDVMCLLQHVSAFQRTFESLKNVSNKSDLQKTYQKLGKELENLDYLAFKRQQDLKS 197
Query: 649 QEHRVMLVNSMNTVKELLPVLIS 717
R + + ++K+ P+L S
Sbjct: 198 PNQRDEIAGARASLKQNSPLLHS 220
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,488,520
Number of extensions: 656017
Number of successful extensions: 2560
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2532
Number of HSP's successfully gapped: 6
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004482
(997 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003364.1| vinculin isoform VCL [Homo sapiens]. 402 e-112
Alignment gi|NP_054706.1| vinculin isoform meta-VCL [Homo sapiens]. 402 e-112
Alignment gi|NP_001894.2| catenin alpha-1 [Homo sapiens]. 69 7e-12
Alignment gi|NP_001158355.1| catenin alpha-2 isoform 2 [Homo sapiens]. 66 4e-11
Alignment gi|NP_004380.2| catenin alpha-2 isoform 1 [Homo sapiens]. 66 4e-11
Alignment gi|NP_001120856.1| catenin alpha-3 [Homo sapiens]. 60 4e-09
Alignment gi|NP_037398.2| catenin alpha-3 [Homo sapiens]. 60 4e-09
>ref|NP_003364.1| vinculin isoform VCL [Homo sapiens].
Length = 1066
Score = 402 bits (1032), Expect = e-112
Identities = 207/209 (99%), Positives = 208/209 (99%)
Frame = +1
Query: 97 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 276
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
Sbjct: 1 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 60
Query: 277 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 456
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
Sbjct: 61 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 120
Query: 457 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 636
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
Sbjct: 121 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 180
Query: 637 ELTHQEHRVMLVNSMNTVKELLPVLISGI 723
ELTHQEHRVMLVNSMNTVKELLPVLIS +
Sbjct: 181 ELTHQEHRVMLVNSMNTVKELLPVLISAM 209
>ref|NP_054706.1| vinculin isoform meta-VCL [Homo sapiens].
Length = 1134
Score = 402 bits (1032), Expect = e-112
Identities = 207/209 (99%), Positives = 208/209 (99%)
Frame = +1
Query: 97 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 276
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
Sbjct: 1 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 60
Query: 277 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 456
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
Sbjct: 61 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 120
Query: 457 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 636
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
Sbjct: 121 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 180
Query: 637 ELTHQEHRVMLVNSMNTVKELLPVLISGI 723
ELTHQEHRVMLVNSMNTVKELLPVLIS +
Sbjct: 181 ELTHQEHRVMLVNSMNTVKELLPVLISAM 209
>ref|NP_001894.2| catenin alpha-1 [Homo sapiens].
Length = 906
Score = 68.9 bits (167), Expect = 7e-12
Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 2/202 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T +E +LEP+ Q++ LV + +G + K A V A+V+ A N + G + +
Sbjct: 22 TLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASVEQATENFLEKGDKIAK 81
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
E Q LK ++ A V + AA DP S R ++ +R +LS + LL
Sbjct: 82 --ESQFLKEELVAAVEDVRKQGDLMKAAAGEFADDPCSSVKRGNMVRAARALLSAVTRLL 139
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V K++ K + + + +DL K L P + K+ M +RQQEL
Sbjct: 140 ILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELK 199
Query: 646 HQEHRVMLVNSMNTVKELLPVL 711
HR + + +++ +P+L
Sbjct: 200 DVGHRDQMAAARGILQKNVPIL 221
>ref|NP_001158355.1| catenin alpha-2 isoform 2 [Homo sapiens].
Length = 860
Score = 66.2 bits (160), Expect = 4e-11
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 2/197 (1%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T T+E +LEP+ Q++ LV +G K A V A+V+ A N + G++ +
Sbjct: 21 TLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAK 80
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
++D LK ++ A V + A+ DP S R ++ +R +LS + LL
Sbjct: 81 ESQD--LKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLL 138
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V +++ K + E L + +DL K G M K+ + RQQEL
Sbjct: 139 ILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELK 198
Query: 646 HQEHRVMLVNSMNTVKE 696
R + + +K+
Sbjct: 199 DPHCRDEMAAARGALKK 215
>ref|NP_004380.2| catenin alpha-2 isoform 1 [Homo sapiens].
Length = 905
Score = 66.2 bits (160), Expect = 4e-11
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 2/197 (1%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T T+E +LEP+ Q++ LV +G K A V A+V+ A N + G++ +
Sbjct: 21 TLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAK 80
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
++D LK ++ A V + A+ DP S R ++ +R +LS + LL
Sbjct: 81 ESQD--LKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLL 138
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V +++ K + E L + +DL K G M K+ + RQQEL
Sbjct: 139 ILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELK 198
Query: 646 HQEHRVMLVNSMNTVKE 696
R + + +K+
Sbjct: 199 DPHCRDEMAAARGALKK 215
>ref|NP_001120856.1| catenin alpha-3 [Homo sapiens].
Length = 895
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 1/203 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV-AAVQAAVSNLVRVGKETVQT 288
T T+E +LEP+ Q++ LV + K + + A+V+ A NL+ G++ Q
Sbjct: 20 TFTVEKLLEPLIIQVTTLVNCPQNPSSRKKGRSKRASVLLASVEEATWNLLDKGEKIAQ- 78
Query: 289 TEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLL 468
E +LK ++ + +V L +A+ DP +P R+ ++ +R +L+ + LL+
Sbjct: 79 -EATVLKDELTASLEEVRKESEALKVSAERFTDDPCFLPKREAVVQAARALLAAVTRLLI 137
Query: 469 TFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTH 648
D +V +++ + V DL + LG + + + +RQQ+L
Sbjct: 138 LADMIDVMCLLQHVSAFQRTFESLKNVANKSDLQKTYQKLGKELENLDYLAFKRQQDLKS 197
Query: 649 QEHRVMLVNSMNTVKELLPVLIS 717
R + + ++KE P+L S
Sbjct: 198 PNQRDEIAGARASLKENSPLLHS 220
>ref|NP_037398.2| catenin alpha-3 [Homo sapiens].
Length = 895
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 1/203 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV-AAVQAAVSNLVRVGKETVQT 288
T T+E +LEP+ Q++ LV + K + + A+V+ A NL+ G++ Q
Sbjct: 20 TFTVEKLLEPLIIQVTTLVNCPQNPSSRKKGRSKRASVLLASVEEATWNLLDKGEKIAQ- 78
Query: 289 TEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLL 468
E +LK ++ + +V L +A+ DP +P R+ ++ +R +L+ + LL+
Sbjct: 79 -EATVLKDELTASLEEVRKESEALKVSAERFTDDPCFLPKREAVVQAARALLAAVTRLLI 137
Query: 469 TFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTH 648
D +V +++ + V DL + LG + + + +RQQ+L
Sbjct: 138 LADMIDVMCLLQHVSAFQRTFESLKNVANKSDLQKTYQKLGKELENLDYLAFKRQQDLKS 197
Query: 649 QEHRVMLVNSMNTVKELLPVLIS 717
R + + ++KE P+L S
Sbjct: 198 PNQRDEIAGARASLKENSPLLHS 220
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,904,768
Number of extensions: 643983
Number of successful extensions: 2301
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2295
Number of HSP's successfully gapped: 7
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004482
(997 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033528.3| vinculin [Mus musculus]. 402 e-112
Alignment gi|NP_001103234.1| catenin alpha-2 isoform 2 [Mus musculus]. 66 4e-11
Alignment gi|NP_663785.2| catenin alpha-2 isoform 1 [Mus musculus]. 66 4e-11
Alignment gi|NP_033949.2| catenin alpha-2 isoform 2 [Mus musculus]. 66 4e-11
Alignment gi|NP_033948.1| catenin alpha-1 [Mus musculus]. 66 4e-11
Alignment gi|NP_001157848.1| catenin alpha-3 isoform 1 [Mus musculus]. 59 4e-09
Alignment gi|NP_808280.2| catenin alpha-3 isoform 1 [Mus musculus]. 59 4e-09
>ref|NP_033528.3| vinculin [Mus musculus].
Length = 1066
Score = 402 bits (1032), Expect = e-112
Identities = 207/209 (99%), Positives = 208/209 (99%)
Frame = +1
Query: 97 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 276
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
Sbjct: 1 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 60
Query: 277 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 456
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
Sbjct: 61 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 120
Query: 457 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 636
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
Sbjct: 121 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 180
Query: 637 ELTHQEHRVMLVNSMNTVKELLPVLISGI 723
ELTHQEHRVMLVNSMNTVKELLPVLIS +
Sbjct: 181 ELTHQEHRVMLVNSMNTVKELLPVLISAM 209
>ref|NP_001103234.1| catenin alpha-2 isoform 2 [Mus musculus].
Length = 953
Score = 66.2 bits (160), Expect = 4e-11
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 2/197 (1%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T T+E +LEP+ Q++ LV +G K A V A+V+ A N + G++ +
Sbjct: 21 TLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAK 80
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
++D LK ++ A V + A+ DP S R ++ +R +LS + LL
Sbjct: 81 ESQD--LKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLL 138
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V +++ K + E L + +DL K G M K+ + RQQEL
Sbjct: 139 ILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELK 198
Query: 646 HQEHRVMLVNSMNTVKE 696
R + + +K+
Sbjct: 199 DPHCRDEMAAARGALKK 215
>ref|NP_663785.2| catenin alpha-2 isoform 1 [Mus musculus].
Length = 905
Score = 66.2 bits (160), Expect = 4e-11
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 2/197 (1%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T T+E +LEP+ Q++ LV +G K A V A+V+ A N + G++ +
Sbjct: 21 TLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAK 80
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
++D LK ++ A V + A+ DP S R ++ +R +LS + LL
Sbjct: 81 ESQD--LKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLL 138
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V +++ K + E L + +DL K G M K+ + RQQEL
Sbjct: 139 ILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELK 198
Query: 646 HQEHRVMLVNSMNTVKE 696
R + + +K+
Sbjct: 199 DPHCRDEMAAARGALKK 215
>ref|NP_033949.2| catenin alpha-2 isoform 2 [Mus musculus].
Length = 953
Score = 66.2 bits (160), Expect = 4e-11
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 2/197 (1%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T T+E +LEP+ Q++ LV +G K A V A+V+ A N + G++ +
Sbjct: 21 TLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAK 80
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
++D LK ++ A V + A+ DP S R ++ +R +LS + LL
Sbjct: 81 ESQD--LKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLL 138
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V +++ K + E L + +DL K G M K+ + RQQEL
Sbjct: 139 ILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELK 198
Query: 646 HQEHRVMLVNSMNTVKE 696
R + + +K+
Sbjct: 199 DPHCRDEMAAARGALKK 215
>ref|NP_033948.1| catenin alpha-1 [Mus musculus].
Length = 906
Score = 66.2 bits (160), Expect = 4e-11
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 2/202 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T +E +LEP+ Q++ LV + +G + K A V A+V+ A N + G + +
Sbjct: 22 TLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASVEQATENFLEKGDKIAK 81
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
E Q LK ++ A V + AA DP S R ++ +R +LS + LL
Sbjct: 82 --ESQFLKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLL 139
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V K++ K + + + +DL K L P + K+ M +RQQEL
Sbjct: 140 ILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELK 199
Query: 646 HQEHRVMLVNSMNTVKELLPVL 711
+R + + +++ +P+L
Sbjct: 200 DVGNRDQMAAARGILQKNVPIL 221
>ref|NP_001157848.1| catenin alpha-3 isoform 1 [Mus musculus].
Length = 895
Score = 59.3 bits (142), Expect = 4e-09
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 1/203 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV-AAVQAAVSNLVRVGKETVQT 288
T T+E +LEP+ Q++ LV + K + A+V+ A NL+ G+ +
Sbjct: 20 TFTVEKLLEPLIIQVTTLVNCPQNPSNRKKGRSKRARVLLASVEEATWNLLDKGEMIAK- 78
Query: 289 TEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLL 468
E +LK ++ A +V L +A+ DP +P R+ ++ +R +L+ + LL+
Sbjct: 79 -EATVLKEELAAALQEVRKESKALKVSAERFTDDPCYLPKREAVVQAARALLAAVTRLLV 137
Query: 469 TFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTH 648
D +V +++ + V DL + LG + + + +RQQ+L
Sbjct: 138 LADMIDVMCLLQHVSSFQRTFESLKNVSNKSDLQRTYQKLGKELESLDYLAFKRQQDLKS 197
Query: 649 QEHRVMLVNSMNTVKELLPVLIS 717
R + + T+KE P+L S
Sbjct: 198 PSQRDEIAGARATLKENSPLLHS 220
>ref|NP_808280.2| catenin alpha-3 isoform 1 [Mus musculus].
Length = 895
Score = 59.3 bits (142), Expect = 4e-09
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 1/203 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV-AAVQAAVSNLVRVGKETVQT 288
T T+E +LEP+ Q++ LV + K + A+V+ A NL+ G+ +
Sbjct: 20 TFTVEKLLEPLIIQVTTLVNCPQNPSNRKKGRSKRARVLLASVEEATWNLLDKGEMIAK- 78
Query: 289 TEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLL 468
E +LK ++ A +V L +A+ DP +P R+ ++ +R +L+ + LL+
Sbjct: 79 -EATVLKEELAAALQEVRKESKALKVSAERFTDDPCYLPKREAVVQAARALLAAVTRLLV 137
Query: 469 TFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTH 648
D +V +++ + V DL + LG + + + +RQQ+L
Sbjct: 138 LADMIDVMCLLQHVSSFQRTFESLKNVSNKSDLQRTYQKLGKELESLDYLAFKRQQDLKS 197
Query: 649 QEHRVMLVNSMNTVKELLPVLIS 717
R + + T+KE P+L S
Sbjct: 198 PSQRDEIAGARATLKENSPLLHS 220
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,465,879
Number of extensions: 547543
Number of successful extensions: 1969
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1960
Number of HSP's successfully gapped: 7
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004482
(997 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999099.1| vinculin [Sus scrofa]. 402 e-112
Alignment gi|XP_003124036.2| PREDICTED: catenin alpha-1-like [Sus scrofa]. 71 8e-13
Alignment gi|XP_001924374.3| PREDICTED: catenin alpha-3, partial [Sus scr... 55 5e-08
Alignment gi|XP_003125023.1| PREDICTED: catenin alpha-2-like [Sus scrofa]. 54 1e-07
>ref|NP_999099.1| vinculin [Sus scrofa].
Length = 1067
Score = 402 bits (1032), Expect = e-112
Identities = 207/209 (99%), Positives = 208/209 (99%)
Frame = +1
Query: 97 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 276
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
Sbjct: 1 MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE 60
Query: 277 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 456
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
Sbjct: 61 TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS 120
Query: 457 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 636
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
Sbjct: 121 DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ 180
Query: 637 ELTHQEHRVMLVNSMNTVKELLPVLISGI 723
ELTHQEHRVMLVNSMNTVKELLPVLIS +
Sbjct: 181 ELTHQEHRVMLVNSMNTVKELLPVLISAM 209
>ref|XP_003124036.2| PREDICTED: catenin alpha-1-like [Sus scrofa].
Length = 361
Score = 71.2 bits (173), Expect = 8e-13
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 2/202 (0%)
Frame = +1
Query: 112 TRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPV--AAVQAAVSNLVRVGKETVQ 285
T +E +LEP+ Q++ LV + +G + K A V A+V+ A N + G + +
Sbjct: 22 TLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASVEQATENFLEKGDKIAK 81
Query: 286 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 465
E Q LK ++ A V + AA DP S R ++ +R +LS + LL
Sbjct: 82 --ESQFLKEELVAAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLL 139
Query: 466 LTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELT 645
+ D A+V K++ K + + + T +DL K L P + K+ M +RQQEL
Sbjct: 140 ILADMADVYKLLVQLKVVEDGILKLRNAGTEQDLGIQYKALKPEVDKLNIMAAKRQQELK 199
Query: 646 HQEHRVMLVNSMNTVKELLPVL 711
HR + + +++ +P+L
Sbjct: 200 DVGHRDQMAAARGILQKNVPIL 221
>ref|XP_001924374.3| PREDICTED: catenin alpha-3, partial [Sus scrofa].
Length = 522
Score = 55.5 bits (132), Expect = 5e-08
Identities = 39/164 (23%), Positives = 76/164 (46%)
Frame = +1
Query: 226 VAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVP 405
+A+V+ A NL+ G++ Q E LK ++ A +V L ++A+ DP +P
Sbjct: 91 LASVEEATWNLLDKGEKIAQ--EATALKEELTGALQEVRKESDALKESAERFADDPCYLP 148
Query: 406 ARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKN 585
R+ ++ +R +L+ + LL+ D +V +++ + V DL +
Sbjct: 149 KREAVVQAARALLAAVTRLLILADMIDVMCLLQHVSAFQRTFDSLKNVSNKSDLQKTYQK 208
Query: 586 LGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLIS 717
LG + + + +RQQ+L R + + ++KE P+L S
Sbjct: 209 LGKELENLDYLAFKRQQDLKSPNQRDEIAGARASLKENSPILHS 252
>ref|XP_003125023.1| PREDICTED: catenin alpha-2-like [Sus scrofa].
Length = 403
Score = 53.9 bits (128), Expect = 1e-07
Identities = 39/156 (25%), Positives = 70/156 (44%)
Frame = +1
Query: 229 AAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPA 408
A+V+ A N + G++ + ++D LK ++ A V + A+ DP S
Sbjct: 31 ASVEQATQNFLEKGEQIAKESQD--LKEELVAAVEDVRKQGETMRIASSEFADDPCSSVK 88
Query: 409 RDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNL 588
R ++ +R +LS + LL+ D A+V +++ K + E L + +DL K
Sbjct: 89 RGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEF 148
Query: 589 GPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKE 696
G M K+ + RQQEL R + + +K+
Sbjct: 149 GKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKK 184
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,984,445
Number of extensions: 445392
Number of successful extensions: 1362
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1361
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004482
(997 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 519 e-145
>Sscrofa_Chr14
|| Length = 153851969
Score = 519 bits (262), Expect = e-145
Identities = 265/266 (99%)
Strand = Plus / Plus
Query: 1 gtagtcgctgctcggagtccttctcttcgcgggttcccctctctgccgttctcagttctc 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 82826516 gtagtcgctgctcggagtccctctcttcgcgggttcccctctctgccgttctcagttctc 82826575
Query: 61 tgtagcccgcggttcgccgccccgctagccgccgcgatgccggtgtttcatacgcgcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82826576 tgtagcccgcggttcgccgccccgctagccgccgcgatgccggtgtttcatacgcgcacg 82826635
Query: 121 atcgagagcatcctggagccggtggcgcagcagatctcgcacctggtgatcatgcacgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82826636 atcgagagcatcctggagccggtggcgcagcagatctcgcacctggtgatcatgcacgag 82826695
Query: 181 gaaggcgaggtggacggcaaagccatccctgacctcaccgcgcctgtggccgccgtgcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82826696 gaaggcgaggtggacggcaaagccatccctgacctcaccgcgcctgtggccgccgtgcag 82826755
Query: 241 gcggcggtcagcaacctcgtccgggt 266
||||||||||||||||||||||||||
Sbjct: 82826756 gcggcggtcagcaacctcgtccgggt 82826781
Score = 329 bits (166), Expect = 2e-87
Identities = 208/218 (95%), Gaps = 3/218 (1%)
Strand = Plus / Plus
Query: 781 acagaaaagccaacgttaatatgttctaaactctggtgttcattttcttttgctgtttag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82892711 acagaaaagccaacgttaatatgttctaaactctggtgttcattttcttttgctgtttag 82892770
Query: 841 ttgcatttccttcagcctgggtaaaaatgcagctgaagggctaagaactggtattcatct 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82892771 ttgcatttccttcagcctgggtaaaaatgcagctgaagggctaagaactggtattcatct 82892830
Query: 901 tctctaatgctctcctcctcctgctctttctttg-aactgcccctctattggcctagttt 959
|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| ||
Sbjct: 82892831 tctctaatgctctcctcctcctgctctttctttgaaactgccctcctatttgcctag-tt 82892889
Query: 960 ctgtttctctaaagttcttacaggcccctgtttctcct 997
||||| |||||||||| ||||| |||||||||||||
Sbjct: 82892890 ctgttctcctaaagttctaacagg-ccctgtttctcct 82892926
Score = 307 bits (155), Expect = 6e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 593 caggaatgactaagatggccaagatgattgacgagaggcagcaggaactgactcaccagg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82892523 caggaatgactaagatggccaagatgattgacgagaggcagcaggaactgactcaccagg 82892582
Query: 653 agcaccgagtgatgttggtgaattcaatgaacactgtaaaagagctgttgccagttctca 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82892583 agcaccgagtgatgttggtgaattcaatgaacactgtaaaagagctgttgccagttctca 82892642
Query: 713 tttccggtattttctgtctgtacttttatcttaca 747
|||||||||||||||||||||||||||||||||||
Sbjct: 82892643 tttccggtattttctgtctgtacttttatcttaca 82892677
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 336 ggttgagaatgcttgtaccaagcttgtccaggcagcccagatgcttcagtcagaccctta 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82889383 ggttgagaatgcttgtaccaagcttgtccaggcagcccagatgcttcagtcagaccctta 82889442
Query: 396 ctcagtgcctgctcgagactatctgatcgatgggtcaaggggcatcctctccggcacatc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82889443 ctcagtgcctgctcgagactatctgatcgatgggtcaaggggcatcctctccggcacatc 82889502
Query: 456 agacctgctcctcaccttcgatgaggctgaggt 488
|||||||||||||||||||||||||||||||||
Sbjct: 82889503 agacctgctcctcaccttcgatgaggctgaggt 82889535
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 485 aggttcgtaaaattattagagtttgcaaaggaattttggaatatcttacagtggcagaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82889712 aggttcgtaaaattattagagtttgcaaaggaattttggaatatcttacagtggcagaag 82889771
Query: 545 tggtggaaactatggaagatttggtcacttacacaaagaatcttggaccagg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82889772 tggtggaaactatggaagatttggtcacttacacaaagaatcttggaccagg 82889823
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 264 ggttggaaaagagactgttcaaaccactgaggatcagattttgaagagagatatgccacc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82864426 ggttggaaaagagactgttcaaaccactgaggatcagattttgaagagagatatgccacc 82864485
Query: 324 agcatttattaag 336
|||||||||||||
Sbjct: 82864486 agcatttattaag 82864498
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,190,448
Number of extensions: 216
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 6
Length of query: 997
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 976
Effective length of database: 2,808,413,156
Effective search space: 2741011240256
Effective search space used: 2741011240256
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)