Animal-Genome cDNA 20110601C-004484


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004484
         (1000 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001095719.1| hypothetical protein LOC540878 [Bos taurus].      425   e-120

>ref|NP_001095719.1| hypothetical protein LOC540878 [Bos taurus].
          Length = 377

 Score =  425 bits (1093), Expect(2) = e-120
 Identities = 211/291 (72%), Positives = 226/291 (77%)
 Frame = +3

Query: 102 MFGAAGRQPIGAPAVGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 281
           MFGAAGRQPIGAPA GNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRS+SCP
Sbjct: 1   MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSISCP 60

Query: 282 LXXXXXXXXXXXXXSYNAHHPWETGHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQ 461
           L             SYN HHPWETGHCLSEGSDSSLEE S+DYRE              Q
Sbjct: 61  LKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQ 120

Query: 462 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRP 641
           MLVAKRRPSSNLNNNVRGKRPLWHESDFA+DSLGN           MAVDLP ++ +KR 
Sbjct: 121 MLVAKRRPSSNLNNNVRGKRPLWHESDFAMDSLGNRTLRRRRKVKRMAVDLPPENPNKRT 180

Query: 642 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 821
           M+QP EGCRDQD+DNDNRAYQYQEF+KNKVKKR+LKI RQGPK QDEGVVLESEE+SQTN
Sbjct: 181 MTQPLEGCRDQDMDNDNRAYQYQEFSKNKVKKRKLKIVRQGPKIQDEGVVLESEEISQTN 240

Query: 822 KDKMDYEEQKVXXXXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYKR 974
           KDKM+YEEQKV               TDAGL  +DEGR GDDEQSDWFY++
Sbjct: 241 KDKMEYEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEK 291



 Score = 26.2 bits (56), Expect(2) = e-120
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 968  QKESGGACGIT 1000
            +KESGGACGIT
Sbjct: 290  EKESGGACGIT 300


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,586,851
Number of extensions: 785335
Number of successful extensions: 3164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3157
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004484
         (1000 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_545711.2| PREDICTED: similar to G patch domain containing...   420   e-119
Alignment   gi|XP_537519.2| PREDICTED: similar to G patch domain containing...    76   4e-14
Alignment   gi|XP_868228.1| PREDICTED: similar to G patch domain containing...    76   4e-14
Alignment   gi|XP_854126.1| PREDICTED: similar to G patch domain containing...    76   4e-14

>ref|XP_545711.2| PREDICTED: similar to G patch domain containing protein 2 [Canis
           familiaris].
          Length = 528

 Score =  420 bits (1080), Expect(2) = e-119
 Identities = 213/291 (73%), Positives = 224/291 (76%)
 Frame = +3

Query: 102 MFGAAGRQPIGAPAVGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 281
           MFGAAGRQPIGAPA GNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRS+SCP
Sbjct: 1   MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSMSCP 60

Query: 282 LXXXXXXXXXXXXXSYNAHHPWETGHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQ 461
           L             SYN HHPWE GHCLSEGSDSSLEE S+DYRE              Q
Sbjct: 61  LKRQARKRRGRKRRSYNVHHPWEPGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQ 120

Query: 462 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRP 641
           MLVAKRRPSSNLNNNVRGKRPLWHESDFAVD+LGN           MAVDLPQD  +KR 
Sbjct: 121 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNLGNRTLRRRRKVKRMAVDLPQDICNKRT 180

Query: 642 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 821
           M+QP EGCRDQD+DND RAYQYQEFTKNKVKKR+LKI RQGPK QDEGVVLESEEVSQT+
Sbjct: 181 MTQPLEGCRDQDMDND-RAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEEVSQTS 239

Query: 822 KDKMDYEEQKVXXXXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYKR 974
           KDKMDYEEQKV               TDAGL  +DEGR GDDEQSDWFY++
Sbjct: 240 KDKMDYEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEK 290



 Score = 26.2 bits (56), Expect(2) = e-119
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 968  QKESGGACGIT 1000
            +KESGGACGIT
Sbjct: 289  EKESGGACGIT 299


>ref|XP_537519.2| PREDICTED: similar to G patch domain containing 2 (predicted)
           isoform 1 [Canis familiaris].
          Length = 474

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 81/277 (29%), Positives = 113/277 (40%), Gaps = 11/277 (3%)
 Frame = +3

Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
           M+ELVHDL SALE++SEQ + G         +LS                  +  H  E 
Sbjct: 1   MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57

Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
             C SE S+SSL+EA +D RE                +VAKR P+  LN  V+ K+  WH
Sbjct: 58  TCCYSEASESSLDEAIKDCRE---LAPVANFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112

Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
           ESD   ++              +  ++      K  +S      GCR             
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159

Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
               K+  K+R  +     P T     + ES E    +S+T  K++M    D ++Q    
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECEADEQKQGSDE 216

Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
                        +D GL  +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253


>ref|XP_868228.1| PREDICTED: similar to G patch domain containing 2 (predicted)
           isoform 3 [Canis familiaris].
          Length = 479

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 81/277 (29%), Positives = 113/277 (40%), Gaps = 11/277 (3%)
 Frame = +3

Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
           M+ELVHDL SALE++SEQ + G         +LS                  +  H  E 
Sbjct: 1   MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57

Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
             C SE S+SSL+EA +D RE                +VAKR P+  LN  V+ K+  WH
Sbjct: 58  TCCYSEASESSLDEAIKDCRE---LAPVANFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112

Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
           ESD   ++              +  ++      K  +S      GCR             
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159

Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
               K+  K+R  +     P T     + ES E    +S+T  K++M    D ++Q    
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECEADEQKQGSDE 216

Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
                        +D GL  +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253


>ref|XP_854126.1| PREDICTED: similar to G patch domain containing 2 (predicted)
           isoform 2 [Canis familiaris].
          Length = 479

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 81/277 (29%), Positives = 113/277 (40%), Gaps = 11/277 (3%)
 Frame = +3

Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
           M+ELVHDL SALE++SEQ + G         +LS                  +  H  E 
Sbjct: 1   MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57

Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
             C SE S+SSL+EA +D RE                +VAKR P+  LN  V+ K+  WH
Sbjct: 58  TCCYSEASESSLDEAIKDCRE---LAPVANFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112

Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
           ESD   ++              +  ++      K  +S      GCR             
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159

Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
               K+  K+R  +     P T     + ES E    +S+T  K++M    D ++Q    
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECEADEQKQGSDE 216

Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
                        +D GL  +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,051,871
Number of extensions: 809502
Number of successful extensions: 3124
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3106
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004484
         (1000 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_060510.1| G patch domain-containing protein 2 [Homo sapie...   418   e-118
Alignment   gi|NP_060442.2| hypothetical protein LOC55668 isoform 2 [Homo s...    77   2e-14
Alignment   gi|NP_060396.2| hypothetical protein LOC55668 isoform 1 [Homo s...    77   2e-14

>ref|NP_060510.1| G patch domain-containing protein 2 [Homo sapiens].
          Length = 528

 Score =  418 bits (1074), Expect(2) = e-118
 Identities = 210/291 (72%), Positives = 225/291 (77%)
 Frame = +3

Query: 102 MFGAAGRQPIGAPAVGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 281
           MFGAAGRQPIGAPA GNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRS+SCP
Sbjct: 1   MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSISCP 60

Query: 282 LXXXXXXXXXXXXXSYNAHHPWETGHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQ 461
           L             SYN HHPWETGHCLSEGSDSSLEE S+DYRE              Q
Sbjct: 61  LKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQ 120

Query: 462 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRP 641
           MLVAKRRPSSNLNNNVRGKRPLWHESDFAVD++GN           MAVDLPQD ++KR 
Sbjct: 121 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNKRT 180

Query: 642 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 821
           M+QPPEGCRDQD+D+D RAYQYQEFTKNKVKKR+LKI RQGPK QDEGVVLESEE +QTN
Sbjct: 181 MTQPPEGCRDQDMDSD-RAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETNQTN 239

Query: 822 KDKMDYEEQKVXXXXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYKR 974
           KDKM+ EEQKV               TDAGL  +DEGR GDDEQSDWFY++
Sbjct: 240 KDKMECEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEK 290



 Score = 26.2 bits (56), Expect(2) = e-118
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 968  QKESGGACGIT 1000
            +KESGGACGIT
Sbjct: 289  EKESGGACGIT 299


>ref|NP_060442.2| hypothetical protein LOC55668 isoform 2 [Homo sapiens].
          Length = 477

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 81/277 (29%), Positives = 114/277 (41%), Gaps = 11/277 (3%)
 Frame = +3

Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
           M+ELVHDL SALE++SEQ + G         +LS                  +  H  E 
Sbjct: 1   MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57

Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
             C SE S+SSL+EA++D RE                +VAKR P+  LN  V+ K+  WH
Sbjct: 58  TCCYSEASESSLDEATKDCRE---VAPVTNFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112

Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
           ESD   ++              +  ++      K  +S      GCR             
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159

Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
               K+  K+R  +     P T     + ES E    +S+T  K++M    D ++Q    
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECETDEQKQGSDE 216

Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
                        +D GL  +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253


>ref|NP_060396.2| hypothetical protein LOC55668 isoform 1 [Homo sapiens].
          Length = 482

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 81/277 (29%), Positives = 114/277 (41%), Gaps = 11/277 (3%)
 Frame = +3

Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
           M+ELVHDL SALE++SEQ + G         +LS                  +  H  E 
Sbjct: 1   MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57

Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
             C SE S+SSL+EA++D RE                +VAKR P+  LN  V+ K+  WH
Sbjct: 58  TCCYSEASESSLDEATKDCRE---VAPVTNFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112

Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
           ESD   ++              +  ++      K  +S      GCR             
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159

Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
               K+  K+R  +     P T     + ES E    +S+T  K++M    D ++Q    
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECETDEQKQGSDE 216

Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
                        +D GL  +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,339,023
Number of extensions: 791069
Number of successful extensions: 2931
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2909
Number of HSP's successfully gapped: 4
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004484
         (1000 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080643.4| G patch domain-containing protein 2 [Mus muscul...   371   e-103
Alignment   gi|NP_081681.2| hypothetical protein LOC70373 [Mus musculus].         76   4e-14

>ref|NP_080643.4| G patch domain-containing protein 2 [Mus musculus].
          Length = 527

 Score =  371 bits (952), Expect(2) = e-103
 Identities = 194/291 (66%), Positives = 211/291 (72%)
 Frame = +3

Query: 102 MFGAAGRQPIGAPAVGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 281
           MFGA GR  IG  A G SWHFSRTMEELVHDLVSALEESSEQARGGFAETG+HSR+LSCP
Sbjct: 1   MFGADGRPAIGT-AAGKSWHFSRTMEELVHDLVSALEESSEQARGGFAETGEHSRNLSCP 59

Query: 282 LXXXXXXXXXXXXXSYNAHHPWETGHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQ 461
           L             SYN HHPWETGHCLSEGSDSSLEE S+DYRE              Q
Sbjct: 60  LKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYREKHSNNKKDRSDSDDQ 119

Query: 462 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRP 641
           MLVAKRRPSSNL+++VRGKR LWHESDFAVDSLGN           MAVDLPQD +SKR 
Sbjct: 120 MLVAKRRPSSNLSSSVRGKRLLWHESDFAVDSLGNRTLRRRRKVKRMAVDLPQDVSSKRT 179

Query: 642 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 821
           M+Q PEGCRDQD+DND RA QY EFT+ KVKKR+LK  R GPKTQ+EG VLESEE SQ N
Sbjct: 180 MTQLPEGCRDQDMDND-RASQYPEFTRKKVKKRKLKGIRPGPKTQEEGGVLESEERSQPN 238

Query: 822 KDKMDYEEQKVXXXXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYKR 974
           KD+M+YEEQK                TDAGL  +DEGR GDDEQSDWFY++
Sbjct: 239 KDRMEYEEQKASDELRSESDTSSLSSTDAGLFTNDEGRQGDDEQSDWFYEK 289



 Score = 24.3 bits (51), Expect(2) = e-103
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 968 QKESGGACGI 997
           +KESGGACGI
Sbjct: 288 EKESGGACGI 297


>ref|NP_081681.2| hypothetical protein LOC70373 [Mus musculus].
          Length = 482

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 77/276 (27%), Positives = 114/276 (41%), Gaps = 10/276 (3%)
 Frame = +3

Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
           M+ELVHDL SALE++SEQ++ G         +LS                  +  H  E 
Sbjct: 1   MDELVHDLASALEQTSEQSKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57

Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
             C SE S+SSL+EA++D RE                +VAKR P+  L+  +RGK+  W 
Sbjct: 58  ACCFSEASESSLDEATKDCRE---VAPLTNFSDSDDTVVAKRHPA--LSAIIRGKQHSWP 112

Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
           ESD   ++              +  ++      K  +S      GCR +      R  ++
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCRFKSA-KKQRLSRW 171

Query: 708 QEFTK--------NKVKKRRLKIARQGPKTQDEGVVLESEEVSQTNKDKMDYEEQKVXXX 863
           +E T          +  + R  +++ G K + E    E +  S  N  + D         
Sbjct: 172 KENTPWTSSGHGLCESAENRTFLSQPGRKERMECEAEEQKHGSDENMSECDTSS------ 225

Query: 864 XXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
                       +D GL  +DEGR GDDEQSDWFY+
Sbjct: 226 --------VCSSSDTGLFTNDEGRQGDDEQSDWFYE 253


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,105,546
Number of extensions: 653556
Number of successful extensions: 2320
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2316
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004484
         (1000 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003130541.2| PREDICTED: G patch domain-containing protein...   457   e-130
Alignment   gi|NP_001230333.1| hypothetical protein LOC100153141 [Sus scrof...    76   3e-14

>ref|XP_003130541.2| PREDICTED: G patch domain-containing protein 2 [Sus scrofa].
          Length = 529

 Score =  457 bits (1177), Expect(2) = e-130
 Identities = 231/291 (79%), Positives = 234/291 (80%)
 Frame = +3

Query: 102 MFGAAGRQPIGAPAVGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 281
           MFGAAGRQPIGAPA GNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP
Sbjct: 1   MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 60

Query: 282 LXXXXXXXXXXXXXSYNAHHPWETGHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQ 461
           L             SYNAHHPWETGHCLSEGSDSSLEEASRDYRE              Q
Sbjct: 61  LKRQARKRRGRKRRSYNAHHPWETGHCLSEGSDSSLEEASRDYRENHSNNKKDHSDSDDQ 120

Query: 462 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRP 641
           MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGN           MAVDLPQDSASKRP
Sbjct: 121 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNRTLRRRRKVKRMAVDLPQDSASKRP 180

Query: 642 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 821
           MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN
Sbjct: 181 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 240

Query: 822 KDKMDYEEQKVXXXXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYKR 974
           KDKMDYEEQKV               TDAGL  +DEGR GDDEQSDWFY++
Sbjct: 241 KDKMDYEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEK 291



 Score = 26.2 bits (56), Expect(2) = e-130
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 968  QKESGGACGIT 1000
            +KESGGACGIT
Sbjct: 290  EKESGGACGIT 300


>ref|NP_001230333.1| hypothetical protein LOC100153141 [Sus scrofa].
          Length = 477

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 81/277 (29%), Positives = 113/277 (40%), Gaps = 11/277 (3%)
 Frame = +3

Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
           M+ELVHDL SALE++SEQ + G         +LS                  +  H  E 
Sbjct: 1   MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57

Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
             C SE S+SSL+EA +D RE                +VAKR P+  LN  V+ K+  WH
Sbjct: 58  TCCYSEASESSLDEAIKDCRE---MAPVTNFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112

Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
           ESD   ++              +  ++      K  +S      GCR             
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159

Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
               K+  K+R  +     P T     + ES E    +S+T  K++M    D ++Q    
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESGETRTFLSKTGRKERMECEADEQKQGSDE 216

Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
                        +D GL  +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,044,359
Number of extensions: 507091
Number of successful extensions: 1970
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1968
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004484
         (1000 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr10                                                         113   2e-22

>Sscrofa_Chr10 
||          Length = 79102373

 Score =  113 bits (57), Expect = 2e-22
 Identities = 64/65 (98%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                           
Query: 937     caggtgatgatgagcagagcgactggttttac-aaaaggagtcgggtggagcatgtggca 995
               |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9667994 caggtgatgatgagcagagcgactggttttacgaaaaggagtcgggtggagcatgtggca 9668053

                    
Query: 996     tcact 1000
               |||||
Sbjct: 9668054 tcact 9668058



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 59/61 (96%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                           
Query: 876     agtgattccagtagtctcagcagcactgatgctggtttgtgttacc-atgatgagggaag 934
               |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 9674757 agtgattccagtagtctcagcagcactgatgctggtttgt-ttaccaatgatgagggaag 9674815

                
Query: 935     a 935
               |
Sbjct: 9674816 a 9674816


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,480,159
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 1000
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 979
Effective length of database: 2,808,413,156
Effective search space: 2749436479724
Effective search space used: 2749436479724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)