Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004484
(1000 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095719.1| hypothetical protein LOC540878 [Bos taurus]. 425 e-120
>ref|NP_001095719.1| hypothetical protein LOC540878 [Bos taurus].
Length = 377
Score = 425 bits (1093), Expect(2) = e-120
Identities = 211/291 (72%), Positives = 226/291 (77%)
Frame = +3
Query: 102 MFGAAGRQPIGAPAVGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 281
MFGAAGRQPIGAPA GNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRS+SCP
Sbjct: 1 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSISCP 60
Query: 282 LXXXXXXXXXXXXXSYNAHHPWETGHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQ 461
L SYN HHPWETGHCLSEGSDSSLEE S+DYRE Q
Sbjct: 61 LKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQ 120
Query: 462 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRP 641
MLVAKRRPSSNLNNNVRGKRPLWHESDFA+DSLGN MAVDLP ++ +KR
Sbjct: 121 MLVAKRRPSSNLNNNVRGKRPLWHESDFAMDSLGNRTLRRRRKVKRMAVDLPPENPNKRT 180
Query: 642 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 821
M+QP EGCRDQD+DNDNRAYQYQEF+KNKVKKR+LKI RQGPK QDEGVVLESEE+SQTN
Sbjct: 181 MTQPLEGCRDQDMDNDNRAYQYQEFSKNKVKKRKLKIVRQGPKIQDEGVVLESEEISQTN 240
Query: 822 KDKMDYEEQKVXXXXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYKR 974
KDKM+YEEQKV TDAGL +DEGR GDDEQSDWFY++
Sbjct: 241 KDKMEYEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEK 291
Score = 26.2 bits (56), Expect(2) = e-120
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 968 QKESGGACGIT 1000
+KESGGACGIT
Sbjct: 290 EKESGGACGIT 300
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,586,851
Number of extensions: 785335
Number of successful extensions: 3164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3157
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004484
(1000 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545711.2| PREDICTED: similar to G patch domain containing... 420 e-119
Alignment gi|XP_537519.2| PREDICTED: similar to G patch domain containing... 76 4e-14
Alignment gi|XP_868228.1| PREDICTED: similar to G patch domain containing... 76 4e-14
Alignment gi|XP_854126.1| PREDICTED: similar to G patch domain containing... 76 4e-14
>ref|XP_545711.2| PREDICTED: similar to G patch domain containing protein 2 [Canis
familiaris].
Length = 528
Score = 420 bits (1080), Expect(2) = e-119
Identities = 213/291 (73%), Positives = 224/291 (76%)
Frame = +3
Query: 102 MFGAAGRQPIGAPAVGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 281
MFGAAGRQPIGAPA GNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRS+SCP
Sbjct: 1 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSMSCP 60
Query: 282 LXXXXXXXXXXXXXSYNAHHPWETGHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQ 461
L SYN HHPWE GHCLSEGSDSSLEE S+DYRE Q
Sbjct: 61 LKRQARKRRGRKRRSYNVHHPWEPGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQ 120
Query: 462 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRP 641
MLVAKRRPSSNLNNNVRGKRPLWHESDFAVD+LGN MAVDLPQD +KR
Sbjct: 121 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNLGNRTLRRRRKVKRMAVDLPQDICNKRT 180
Query: 642 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 821
M+QP EGCRDQD+DND RAYQYQEFTKNKVKKR+LKI RQGPK QDEGVVLESEEVSQT+
Sbjct: 181 MTQPLEGCRDQDMDND-RAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEEVSQTS 239
Query: 822 KDKMDYEEQKVXXXXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYKR 974
KDKMDYEEQKV TDAGL +DEGR GDDEQSDWFY++
Sbjct: 240 KDKMDYEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEK 290
Score = 26.2 bits (56), Expect(2) = e-119
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 968 QKESGGACGIT 1000
+KESGGACGIT
Sbjct: 289 EKESGGACGIT 299
>ref|XP_537519.2| PREDICTED: similar to G patch domain containing 2 (predicted)
isoform 1 [Canis familiaris].
Length = 474
Score = 76.3 bits (186), Expect = 4e-14
Identities = 81/277 (29%), Positives = 113/277 (40%), Gaps = 11/277 (3%)
Frame = +3
Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
M+ELVHDL SALE++SEQ + G +LS + H E
Sbjct: 1 MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57
Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
C SE S+SSL+EA +D RE +VAKR P+ LN V+ K+ WH
Sbjct: 58 TCCYSEASESSLDEAIKDCRE---LAPVANFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112
Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
ESD ++ + ++ K +S GCR
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159
Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
K+ K+R + P T + ES E +S+T K++M D ++Q
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECEADEQKQGSDE 216
Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
+D GL +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253
>ref|XP_868228.1| PREDICTED: similar to G patch domain containing 2 (predicted)
isoform 3 [Canis familiaris].
Length = 479
Score = 76.3 bits (186), Expect = 4e-14
Identities = 81/277 (29%), Positives = 113/277 (40%), Gaps = 11/277 (3%)
Frame = +3
Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
M+ELVHDL SALE++SEQ + G +LS + H E
Sbjct: 1 MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57
Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
C SE S+SSL+EA +D RE +VAKR P+ LN V+ K+ WH
Sbjct: 58 TCCYSEASESSLDEAIKDCRE---LAPVANFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112
Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
ESD ++ + ++ K +S GCR
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159
Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
K+ K+R + P T + ES E +S+T K++M D ++Q
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECEADEQKQGSDE 216
Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
+D GL +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253
>ref|XP_854126.1| PREDICTED: similar to G patch domain containing 2 (predicted)
isoform 2 [Canis familiaris].
Length = 479
Score = 76.3 bits (186), Expect = 4e-14
Identities = 81/277 (29%), Positives = 113/277 (40%), Gaps = 11/277 (3%)
Frame = +3
Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
M+ELVHDL SALE++SEQ + G +LS + H E
Sbjct: 1 MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57
Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
C SE S+SSL+EA +D RE +VAKR P+ LN V+ K+ WH
Sbjct: 58 TCCYSEASESSLDEAIKDCRE---LAPVANFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112
Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
ESD ++ + ++ K +S GCR
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159
Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
K+ K+R + P T + ES E +S+T K++M D ++Q
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECEADEQKQGSDE 216
Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
+D GL +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,051,871
Number of extensions: 809502
Number of successful extensions: 3124
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3106
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004484
(1000 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060510.1| G patch domain-containing protein 2 [Homo sapie... 418 e-118
Alignment gi|NP_060442.2| hypothetical protein LOC55668 isoform 2 [Homo s... 77 2e-14
Alignment gi|NP_060396.2| hypothetical protein LOC55668 isoform 1 [Homo s... 77 2e-14
>ref|NP_060510.1| G patch domain-containing protein 2 [Homo sapiens].
Length = 528
Score = 418 bits (1074), Expect(2) = e-118
Identities = 210/291 (72%), Positives = 225/291 (77%)
Frame = +3
Query: 102 MFGAAGRQPIGAPAVGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 281
MFGAAGRQPIGAPA GNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRS+SCP
Sbjct: 1 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSISCP 60
Query: 282 LXXXXXXXXXXXXXSYNAHHPWETGHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQ 461
L SYN HHPWETGHCLSEGSDSSLEE S+DYRE Q
Sbjct: 61 LKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQ 120
Query: 462 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRP 641
MLVAKRRPSSNLNNNVRGKRPLWHESDFAVD++GN MAVDLPQD ++KR
Sbjct: 121 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNKRT 180
Query: 642 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 821
M+QPPEGCRDQD+D+D RAYQYQEFTKNKVKKR+LKI RQGPK QDEGVVLESEE +QTN
Sbjct: 181 MTQPPEGCRDQDMDSD-RAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETNQTN 239
Query: 822 KDKMDYEEQKVXXXXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYKR 974
KDKM+ EEQKV TDAGL +DEGR GDDEQSDWFY++
Sbjct: 240 KDKMECEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEK 290
Score = 26.2 bits (56), Expect(2) = e-118
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 968 QKESGGACGIT 1000
+KESGGACGIT
Sbjct: 289 EKESGGACGIT 299
>ref|NP_060442.2| hypothetical protein LOC55668 isoform 2 [Homo sapiens].
Length = 477
Score = 77.4 bits (189), Expect = 2e-14
Identities = 81/277 (29%), Positives = 114/277 (41%), Gaps = 11/277 (3%)
Frame = +3
Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
M+ELVHDL SALE++SEQ + G +LS + H E
Sbjct: 1 MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57
Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
C SE S+SSL+EA++D RE +VAKR P+ LN V+ K+ WH
Sbjct: 58 TCCYSEASESSLDEATKDCRE---VAPVTNFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112
Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
ESD ++ + ++ K +S GCR
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159
Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
K+ K+R + P T + ES E +S+T K++M D ++Q
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECETDEQKQGSDE 216
Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
+D GL +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253
>ref|NP_060396.2| hypothetical protein LOC55668 isoform 1 [Homo sapiens].
Length = 482
Score = 77.4 bits (189), Expect = 2e-14
Identities = 81/277 (29%), Positives = 114/277 (41%), Gaps = 11/277 (3%)
Frame = +3
Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
M+ELVHDL SALE++SEQ + G +LS + H E
Sbjct: 1 MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57
Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
C SE S+SSL+EA++D RE +VAKR P+ LN V+ K+ WH
Sbjct: 58 TCCYSEASESSLDEATKDCRE---VAPVTNFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112
Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
ESD ++ + ++ K +S GCR
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159
Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
K+ K+R + P T + ES E +S+T K++M D ++Q
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECETDEQKQGSDE 216
Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
+D GL +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,339,023
Number of extensions: 791069
Number of successful extensions: 2931
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2909
Number of HSP's successfully gapped: 4
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004484
(1000 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080643.4| G patch domain-containing protein 2 [Mus muscul... 371 e-103
Alignment gi|NP_081681.2| hypothetical protein LOC70373 [Mus musculus]. 76 4e-14
>ref|NP_080643.4| G patch domain-containing protein 2 [Mus musculus].
Length = 527
Score = 371 bits (952), Expect(2) = e-103
Identities = 194/291 (66%), Positives = 211/291 (72%)
Frame = +3
Query: 102 MFGAAGRQPIGAPAVGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 281
MFGA GR IG A G SWHFSRTMEELVHDLVSALEESSEQARGGFAETG+HSR+LSCP
Sbjct: 1 MFGADGRPAIGT-AAGKSWHFSRTMEELVHDLVSALEESSEQARGGFAETGEHSRNLSCP 59
Query: 282 LXXXXXXXXXXXXXSYNAHHPWETGHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQ 461
L SYN HHPWETGHCLSEGSDSSLEE S+DYRE Q
Sbjct: 60 LKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYREKHSNNKKDRSDSDDQ 119
Query: 462 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRP 641
MLVAKRRPSSNL+++VRGKR LWHESDFAVDSLGN MAVDLPQD +SKR
Sbjct: 120 MLVAKRRPSSNLSSSVRGKRLLWHESDFAVDSLGNRTLRRRRKVKRMAVDLPQDVSSKRT 179
Query: 642 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 821
M+Q PEGCRDQD+DND RA QY EFT+ KVKKR+LK R GPKTQ+EG VLESEE SQ N
Sbjct: 180 MTQLPEGCRDQDMDND-RASQYPEFTRKKVKKRKLKGIRPGPKTQEEGGVLESEERSQPN 238
Query: 822 KDKMDYEEQKVXXXXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYKR 974
KD+M+YEEQK TDAGL +DEGR GDDEQSDWFY++
Sbjct: 239 KDRMEYEEQKASDELRSESDTSSLSSTDAGLFTNDEGRQGDDEQSDWFYEK 289
Score = 24.3 bits (51), Expect(2) = e-103
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 968 QKESGGACGI 997
+KESGGACGI
Sbjct: 288 EKESGGACGI 297
>ref|NP_081681.2| hypothetical protein LOC70373 [Mus musculus].
Length = 482
Score = 76.3 bits (186), Expect = 4e-14
Identities = 77/276 (27%), Positives = 114/276 (41%), Gaps = 10/276 (3%)
Frame = +3
Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
M+ELVHDL SALE++SEQ++ G +LS + H E
Sbjct: 1 MDELVHDLASALEQTSEQSKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57
Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
C SE S+SSL+EA++D RE +VAKR P+ L+ +RGK+ W
Sbjct: 58 ACCFSEASESSLDEATKDCRE---VAPLTNFSDSDDTVVAKRHPA--LSAIIRGKQHSWP 112
Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
ESD ++ + ++ K +S GCR + R ++
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCRFKSA-KKQRLSRW 171
Query: 708 QEFTK--------NKVKKRRLKIARQGPKTQDEGVVLESEEVSQTNKDKMDYEEQKVXXX 863
+E T + + R +++ G K + E E + S N + D
Sbjct: 172 KENTPWTSSGHGLCESAENRTFLSQPGRKERMECEAEEQKHGSDENMSECDTSS------ 225
Query: 864 XXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
+D GL +DEGR GDDEQSDWFY+
Sbjct: 226 --------VCSSSDTGLFTNDEGRQGDDEQSDWFYE 253
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,105,546
Number of extensions: 653556
Number of successful extensions: 2320
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2316
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004484
(1000 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130541.2| PREDICTED: G patch domain-containing protein... 457 e-130
Alignment gi|NP_001230333.1| hypothetical protein LOC100153141 [Sus scrof... 76 3e-14
>ref|XP_003130541.2| PREDICTED: G patch domain-containing protein 2 [Sus scrofa].
Length = 529
Score = 457 bits (1177), Expect(2) = e-130
Identities = 231/291 (79%), Positives = 234/291 (80%)
Frame = +3
Query: 102 MFGAAGRQPIGAPAVGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 281
MFGAAGRQPIGAPA GNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP
Sbjct: 1 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSLSCP 60
Query: 282 LXXXXXXXXXXXXXSYNAHHPWETGHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQ 461
L SYNAHHPWETGHCLSEGSDSSLEEASRDYRE Q
Sbjct: 61 LKRQARKRRGRKRRSYNAHHPWETGHCLSEGSDSSLEEASRDYRENHSNNKKDHSDSDDQ 120
Query: 462 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRP 641
MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGN MAVDLPQDSASKRP
Sbjct: 121 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDSLGNRTLRRRRKVKRMAVDLPQDSASKRP 180
Query: 642 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 821
MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN
Sbjct: 181 MSQPPEGCRDQDVDNDNRAYQYQEFTKNKVKKRRLKIARQGPKTQDEGVVLESEEVSQTN 240
Query: 822 KDKMDYEEQKVXXXXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYKR 974
KDKMDYEEQKV TDAGL +DEGR GDDEQSDWFY++
Sbjct: 241 KDKMDYEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEK 291
Score = 26.2 bits (56), Expect(2) = e-130
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 968 QKESGGACGIT 1000
+KESGGACGIT
Sbjct: 290 EKESGGACGIT 300
>ref|NP_001230333.1| hypothetical protein LOC100153141 [Sus scrofa].
Length = 477
Score = 75.9 bits (185), Expect = 3e-14
Identities = 81/277 (29%), Positives = 113/277 (40%), Gaps = 11/277 (3%)
Frame = +3
Query: 174 MEELVHDLVSALEESSEQARGGFAETGDHSRSLSCPLXXXXXXXXXXXXXSYNAHHPWET 353
M+ELVHDL SALE++SEQ + G +LS + H E
Sbjct: 1 MDELVHDLASALEQTSEQNKLGELW---EEMALSPRQQRRQLRKRRGRKRRSDFTHLAEH 57
Query: 354 GHCLSEGSDSSLEEASRDYREXXXXXXXXXXXXXXQMLVAKRRPSSNLNNNVRGKRPLWH 533
C SE S+SSL+EA +D RE +VAKR P+ LN V+ K+ WH
Sbjct: 58 TCCYSEASESSLDEAIKDCRE---MAPVTNFSDSDDTMVAKRHPA--LNAIVKSKQHSWH 112
Query: 534 ESDFAVDSLGNXXXXXXXXXXXMAVDLPQDSASKRPMS--QPPEGCRDQDVDNDNRAYQY 707
ESD ++ + ++ K +S GCR
Sbjct: 113 ESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCR------------- 159
Query: 708 QEFTKNKVKKRRLKIARQGPKTQDEGVVLESEE----VSQT-NKDKM----DYEEQKVXX 860
K+ K+R + P T + ES E +S+T K++M D ++Q
Sbjct: 160 ---FKSAKKQRLSRWKENTPWTSSGHGLCESGETRTFLSKTGRKERMECEADEQKQGSDE 216
Query: 861 XXXXXXXXXXXXXTDAGLCYHDEGRTGDDEQSDWFYK 971
+D GL +DEGR GDDEQSDWFY+
Sbjct: 217 NMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYE 253
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,044,359
Number of extensions: 507091
Number of successful extensions: 1970
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1968
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004484
(1000 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 113 2e-22
>Sscrofa_Chr10
|| Length = 79102373
Score = 113 bits (57), Expect = 2e-22
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 937 caggtgatgatgagcagagcgactggttttac-aaaaggagtcgggtggagcatgtggca 995
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9667994 caggtgatgatgagcagagcgactggttttacgaaaaggagtcgggtggagcatgtggca 9668053
Query: 996 tcact 1000
|||||
Sbjct: 9668054 tcact 9668058
Score = 89.7 bits (45), Expect = 3e-15
Identities = 59/61 (96%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 876 agtgattccagtagtctcagcagcactgatgctggtttgtgttacc-atgatgagggaag 934
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 9674757 agtgattccagtagtctcagcagcactgatgctggtttgt-ttaccaatgatgagggaag 9674815
Query: 935 a 935
|
Sbjct: 9674816 a 9674816
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,480,159
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 1000
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 979
Effective length of database: 2,808,413,156
Effective search space: 2749436479724
Effective search space used: 2749436479724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)