Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004492
(1067 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776853.2| DNA polymerase delta subunit 2 [Bos taurus]. 563 e-161
>ref|NP_776853.2| DNA polymerase delta subunit 2 [Bos taurus].
Length = 469
Score = 563 bits (1451), Expect = e-161
Identities = 285/320 (89%), Positives = 291/320 (90%)
Frame = +3
Query: 108 MFSEQAAQRAHTLLSPPSASNATFDRIPVVTYTNSSQPFRLGERSFNRQYAHIYATRLVQ 287
MFSEQAAQRAHTLLSPPSASNATF R+PVVTYTNSSQPFRLGERSF+RQYAHIYATRL+Q
Sbjct: 1 MFSEQAAQRAHTLLSPPSASNATFARVPVVTYTNSSQPFRLGERSFSRQYAHIYATRLIQ 60
Query: 288 MRPFLVSRARQRWGGGVVVKKLCELQPGEKCCVVGTLFKAMQLQPSILREVSEEHNLLPQ 467
MRPFLVSRA+QRWG GV+VKKLCELQPGEKCCVVGTLFKAM LQPSILREVSEEHNLLPQ
Sbjct: 61 MRPFLVSRAQQRWGSGVLVKKLCELQPGEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ 120
Query: 468 PPRSKYIHPDDELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCFAG 647
PPRSKYIHPDDELILEDELQRIKLEG IDVSKLVTGTVLA+LGSAGDDGKFLVEDHCFAG
Sbjct: 121 PPRSKYIHPDDELILEDELQRIKLEGTIDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFAG 180
Query: 648 LAPQKPTRPLDTDRFVXXXXXXXXXXXXXXXXXXXXXXVDVVTGQLGDEGE*CSAAHVSR 827
LAPQKP PLDTDRFV VDVVTGQLGDEGE CSAAHVSR
Sbjct: 181 LAPQKPACPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR 240
Query: 828 VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 1007
VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD
Sbjct: 241 VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 300
Query: 1008 PTNYTLPQQPLHPCMFPLAT 1067
PTNYTLPQQPLHPCMFPLAT
Sbjct: 301 PTNYTLPQQPLHPCMFPLAT 320
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,894,768
Number of extensions: 1100719
Number of successful extensions: 6233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6181
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004492
(1067 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539802.2| PREDICTED: similar to DNA polymerase delta subu... 537 e-153
>ref|XP_539802.2| PREDICTED: similar to DNA polymerase delta subunit 2 (DNA polymerase
delta subunit p50) [Canis familiaris].
Length = 469
Score = 537 bits (1383), Expect = e-153
Identities = 271/320 (84%), Positives = 282/320 (88%)
Frame = +3
Query: 108 MFSEQAAQRAHTLLSPPSASNATFDRIPVVTYTNSSQPFRLGERSFNRQYAHIYATRLVQ 287
MFSEQAAQRAHTLLSPPSASNATF R+PV TYTNSSQ FRLGERSF+RQYAHIYATRL+Q
Sbjct: 1 MFSEQAAQRAHTLLSPPSASNATFARVPVSTYTNSSQSFRLGERSFSRQYAHIYATRLLQ 60
Query: 288 MRPFLVSRARQRWGGGVVVKKLCELQPGEKCCVVGTLFKAMQLQPSILREVSEEHNLLPQ 467
MRPFLVSRA+Q WG G+ +KKLCELQPGEKCCVVGTLFKAM LQPSILRE+SEEHNLLPQ
Sbjct: 61 MRPFLVSRAQQHWGDGIQIKKLCELQPGEKCCVVGTLFKAMPLQPSILREISEEHNLLPQ 120
Query: 468 PPRSKYIHPDDELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCFAG 647
PPRSKYIHPDD+L+LEDELQRIKLEG+ID SKLVTGTVLA+LGS D GKFLVEDHCFA
Sbjct: 121 PPRSKYIHPDDQLVLEDELQRIKLEGSIDASKLVTGTVLAVLGSVRDSGKFLVEDHCFAE 180
Query: 648 LAPQKPTRPLDTDRFVXXXXXXXXXXXXXXXXXXXXXXVDVVTGQLGDEGE*CSAAHVSR 827
LAPQKP LDTDRFV VDVVTGQLGDEGE CSAAHVSR
Sbjct: 181 LAPQKPAPTLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR 240
Query: 828 VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 1007
VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD
Sbjct: 241 VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 300
Query: 1008 PTNYTLPQQPLHPCMFPLAT 1067
PTNYTLPQQPLHPCMFPLAT
Sbjct: 301 PTNYTLPQQPLHPCMFPLAT 320
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,546,622
Number of extensions: 1135701
Number of successful extensions: 6436
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6332
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004492
(1067 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001120690.1| DNA polymerase delta subunit 2 [Homo sapiens]. 536 e-152
Alignment gi|NP_006221.1| DNA polymerase delta subunit 2 [Homo sapiens]. 536 e-152
>ref|NP_001120690.1| DNA polymerase delta subunit 2 [Homo sapiens].
Length = 469
Score = 536 bits (1380), Expect = e-152
Identities = 271/320 (84%), Positives = 282/320 (88%)
Frame = +3
Query: 108 MFSEQAAQRAHTLLSPPSASNATFDRIPVVTYTNSSQPFRLGERSFNRQYAHIYATRLVQ 287
MFSEQAAQRAHTLLSPPSA+NATF R+PV TYTNSSQPFRLGERSF+RQYAHIYATRL+Q
Sbjct: 1 MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQ 60
Query: 288 MRPFLVSRARQRWGGGVVVKKLCELQPGEKCCVVGTLFKAMQLQPSILREVSEEHNLLPQ 467
MRPFL +RA+Q WG GV VKKLCELQP EKCCVVGTLFKAM LQPSILREVSEEHNLLPQ
Sbjct: 61 MRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ 120
Query: 468 PPRSKYIHPDDELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCFAG 647
PPRSKYIHPDDEL+LEDELQRIKL+G IDVSKLVTGTVLA+ GS DDGKFLVED+CFA
Sbjct: 121 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFAD 180
Query: 648 LAPQKPTRPLDTDRFVXXXXXXXXXXXXXXXXXXXXXXVDVVTGQLGDEGE*CSAAHVSR 827
LAPQKP PLDTDRFV VDVVTGQLGDEGE CSAAHVSR
Sbjct: 181 LAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR 240
Query: 828 VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 1007
VILAGNLLSH+TQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD
Sbjct: 241 VILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 300
Query: 1008 PTNYTLPQQPLHPCMFPLAT 1067
PTNYTLPQQPLHPCMFPLAT
Sbjct: 301 PTNYTLPQQPLHPCMFPLAT 320
>ref|NP_006221.1| DNA polymerase delta subunit 2 [Homo sapiens].
Length = 469
Score = 536 bits (1380), Expect = e-152
Identities = 271/320 (84%), Positives = 282/320 (88%)
Frame = +3
Query: 108 MFSEQAAQRAHTLLSPPSASNATFDRIPVVTYTNSSQPFRLGERSFNRQYAHIYATRLVQ 287
MFSEQAAQRAHTLLSPPSA+NATF R+PV TYTNSSQPFRLGERSF+RQYAHIYATRL+Q
Sbjct: 1 MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQ 60
Query: 288 MRPFLVSRARQRWGGGVVVKKLCELQPGEKCCVVGTLFKAMQLQPSILREVSEEHNLLPQ 467
MRPFL +RA+Q WG GV VKKLCELQP EKCCVVGTLFKAM LQPSILREVSEEHNLLPQ
Sbjct: 61 MRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ 120
Query: 468 PPRSKYIHPDDELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCFAG 647
PPRSKYIHPDDEL+LEDELQRIKL+G IDVSKLVTGTVLA+ GS DDGKFLVED+CFA
Sbjct: 121 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFAD 180
Query: 648 LAPQKPTRPLDTDRFVXXXXXXXXXXXXXXXXXXXXXXVDVVTGQLGDEGE*CSAAHVSR 827
LAPQKP PLDTDRFV VDVVTGQLGDEGE CSAAHVSR
Sbjct: 181 LAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR 240
Query: 828 VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 1007
VILAGNLLSH+TQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD
Sbjct: 241 VILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 300
Query: 1008 PTNYTLPQQPLHPCMFPLAT 1067
PTNYTLPQQPLHPCMFPLAT
Sbjct: 301 PTNYTLPQQPLHPCMFPLAT 320
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,701,648
Number of extensions: 1109240
Number of successful extensions: 5793
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5738
Number of HSP's successfully gapped: 2
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004492
(1067 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032920.2| DNA polymerase delta subunit 2 [Mus musculus]. 543 e-154
>ref|NP_032920.2| DNA polymerase delta subunit 2 [Mus musculus].
Length = 469
Score = 543 bits (1398), Expect = e-154
Identities = 273/320 (85%), Positives = 284/320 (88%)
Frame = +3
Query: 108 MFSEQAAQRAHTLLSPPSASNATFDRIPVVTYTNSSQPFRLGERSFNRQYAHIYATRLVQ 287
MFSEQAAQRAHTLL+PPSASNATF R+PV TYTNSSQPFRLGERSFNRQYAHIYATRL+Q
Sbjct: 1 MFSEQAAQRAHTLLAPPSASNATFARVPVATYTNSSQPFRLGERSFNRQYAHIYATRLIQ 60
Query: 288 MRPFLVSRARQRWGGGVVVKKLCELQPGEKCCVVGTLFKAMQLQPSILREVSEEHNLLPQ 467
MRPFLVSRA+Q WG V VKKLCELQPGE+CCVVGTLFKAM LQPSILRE+SEEHNL+PQ
Sbjct: 61 MRPFLVSRAQQHWGSRVEVKKLCELQPGEQCCVVGTLFKAMSLQPSILREISEEHNLVPQ 120
Query: 468 PPRSKYIHPDDELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCFAG 647
PPRSKYIHPDDEL+LEDELQRIKL+G IDVSKLVTGTVLA+LGSA DDG+F VEDHCFA
Sbjct: 121 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFAD 180
Query: 648 LAPQKPTRPLDTDRFVXXXXXXXXXXXXXXXXXXXXXXVDVVTGQLGDEGE*CSAAHVSR 827
LAPQKP PLDTDRFV VDVVTGQLGDEGE CSAAHVSR
Sbjct: 181 LAPQKPVPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR 240
Query: 828 VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 1007
VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD
Sbjct: 241 VILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD 300
Query: 1008 PTNYTLPQQPLHPCMFPLAT 1067
PTNYTLPQQPLHPCMFPLAT
Sbjct: 301 PTNYTLPQQPLHPCMFPLAT 320
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,402,588
Number of extensions: 911120
Number of successful extensions: 4563
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4522
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004492
(1067 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134935.1| PREDICTED: DNA polymerase delta subunit 2-li... 587 e-168
>ref|XP_003134935.1| PREDICTED: DNA polymerase delta subunit 2-like [Sus scrofa].
Length = 471
Score = 587 bits (1514), Expect = e-168
Identities = 299/322 (92%), Positives = 299/322 (92%)
Frame = +3
Query: 102 MAMFSEQAAQRAHTLLSPPSASNATFDRIPVVTYTNSSQPFRLGERSFNRQYAHIYATRL 281
MAMFSEQAAQRAHTLLSPPSASNATFDRIPVVTYTNSSQPFRLGERSFNRQYAHIYATRL
Sbjct: 1 MAMFSEQAAQRAHTLLSPPSASNATFDRIPVVTYTNSSQPFRLGERSFNRQYAHIYATRL 60
Query: 282 VQMRPFLVSRARQRWGGGVVVKKLCELQPGEKCCVVGTLFKAMQLQPSILREVSEEHNLL 461
VQMRPFLVSRARQRWGGGVVVKKLCELQPGEKCCVVGTLFKAMQLQPSILREVSEEHNLL
Sbjct: 61 VQMRPFLVSRARQRWGGGVVVKKLCELQPGEKCCVVGTLFKAMQLQPSILREVSEEHNLL 120
Query: 462 PQPPRSKYIHPDDELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCF 641
PQPPRSKYIHPDDELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCF
Sbjct: 121 PQPPRSKYIHPDDELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCF 180
Query: 642 AGLAPQKPTRPLDTDRFVXXXXXXXXXXXXXXXXXXXXXXVDVVTGQLGDEGE*CSAAHV 821
AGLAPQKPTRPLDTDRFV VDVVTGQLGDEGE CSAAHV
Sbjct: 181 AGLAPQKPTRPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHV 240
Query: 822 SRVILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGE 1001
SRVILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGE
Sbjct: 241 SRVILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGE 300
Query: 1002 FDPTNYTLPQQPLHPCMFPLAT 1067
FDPTNYTLPQQPLHPCMFPLAT
Sbjct: 301 FDPTNYTLPQQPLHPCMFPLAT 322
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,169,035
Number of extensions: 711975
Number of successful extensions: 4016
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3918
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004492
(1067 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 551 e-154
Sscrofa_Chr13 496 e-137
>Sscrofa_Chr18
|| Length = 61220071
Score = 551 bits (278), Expect = e-154
Identities = 278/278 (100%)
Strand = Plus / Plus
Query: 51 agggtccgcctcctcctcggcctggcctcagtaggtctggacgcatcaagcatggccatg 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55933330 agggtccgcctcctcctcggcctggcctcagtaggtctggacgcatcaagcatggccatg 55933389
Query: 111 ttttctgagcaggctgcccagagggcgcacactctgctgtccccaccatcagccagcaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55933390 ttttctgagcaggctgcccagagggcgcacactctgctgtccccaccatcagccagcaac 55933449
Query: 171 gccacttttgaccgaatccccgtggtgacttacaccaactcgtcccagcccttccgacta 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55933450 gccacttttgaccgaatccccgtggtgacttacaccaactcgtcccagcccttccgacta 55933509
Query: 231 ggggagcgcagctttaaccggcagtatgcccacatttatgccacccgcctggtccagatg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55933510 ggggagcgcagctttaaccggcagtatgcccacatttatgccacccgcctggtccagatg 55933569
Query: 291 aggcccttcctggtgagccgggccaggcagcgctgggg 328
||||||||||||||||||||||||||||||||||||||
Sbjct: 55933570 aggcccttcctggtgagccgggccaggcagcgctgggg 55933607
Score = 394 bits (199), Expect = e-107
Identities = 202/203 (99%)
Strand = Plus / Plus
Query: 686 caggtttgtgttgctggtgtctggtctgggcctgggtggaggcgggggtgagagcctgct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55938196 caggtttgtgttgctggtgtctggtctgggcctgggtggaggcgggggtgagagcctgct 55938255
Query: 746 gggcacccagctgctggtggacgtggtgacggggcagcttggagacgaaggggagtagtg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 55938256 gggcacccagctgctggtggacgtggtgacggggcagcttggagacgaaggggagcagtg 55938315
Query: 806 cagtgccgcccacgtctcccgggtcatcctcgccgggaacctcctcagccataacaccca 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55938316 cagtgccgcccacgtctcccgggtcatcctcgccgggaacctcctcagccataacaccca 55938375
Query: 866 gagcagagattccatcaacaagg 888
|||||||||||||||||||||||
Sbjct: 55938376 gagcagagattccatcaacaagg 55938398
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 448 agcacaacctgctcccccagcctcctcggagcaaatacatccacccggatgacgagctga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55937531 agcacaacctgctcccccagcctcctcggagcaaatacatccacccggatgacgagctga 55937590
Query: 508 tcttggaagatgaattgcagcgcatcaaactggagggcgccattgacgtgtccaagctgg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55937591 tcttggaagatgaattgcagcgcatcaaactggagggcgccattgacgtgtccaagctgg 55937650
Query: 568 tcacagg 574
|||||||
Sbjct: 55937651 tcacagg 55937657
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 327 ggcgggggcgtcgtcgtgaagaagctgtgtgagctgcagcccggggagaagtgctgtgtg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55937226 ggcgggggcgtcgtcgtgaagaagctgtgtgagctgcagcccggggagaagtgctgtgtg 55937285
Query: 387 gtcgggaccctcttcaaggccatgcagctccagccctccatcctgcgggaagtcagcgaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55937286 gtcgggaccctcttcaaggccatgcagctccagccctccatcctgcgggaagtcagcgaa 55937345
Query: 447 gag 449
|||
Sbjct: 55937346 gag 55937348
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 571 cagggacggtcctggccctgctgggctccgcgggggatgacgggaagttcctggtggagg 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55937923 cagggacggtcctggccctgctgggctccgcgggggatgacgggaagttcctggtggagg 55937982
Query: 631 accactgctttgcagggcttgcccctcagaagcccacacgccccctcgacacagacaggt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55937983 accactgctttgcagggcttgcccctcagaagcccacacgccccctcgacacagacaggt 55938042
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 969 gcctccgtgcccgtggacgtgatgccaggcgaatttgacccgaccaactacacgctcccc 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55938900 gcctccgtgcccgtggacgtgatgccaggcgaatttgacccgaccaactacacgctcccc 55938959
Query: 1029 cagcagcccctgcacccctgcatgttccctctggccact 1067
|||||||||||||||||||||||||||||||||||||||
Sbjct: 55938960 cagcagcccctgcacccctgcatgttccctctggccact 55938998
Score = 159 bits (80), Expect = 4e-36
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 886 aggccaagtacctgaccaagaagacgcaggcagccagcgtggaggccgtcaagatgctgg 945
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 55938680 aggccaagtacctgaccaagaagacgcaggcagctagcgtggaggccgtcaagatgctgg 55938739
Query: 946 acgagatcctcctgcagctgagtg 969
||||||||||||||||||||||||
Sbjct: 55938740 acgagatcctcctgcagctgagtg 55938763
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 1 ggattggcgggagacggcgcgcggcagtgggcggatcgcgtcgcacagcgagg 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55932004 ggattggcgggagacggcgcgcggcagtgggcggatcgcgtcgcacagcgagg 55932056
>Sscrofa_Chr13
|| Length = 218635234
Score = 496 bits (250), Expect = e-137
Identities = 685/829 (82%), Gaps = 17/829 (2%)
Strand = Plus / Plus
Query: 216 cagcccttccgactaggggagcgca-gctttaaccggcagtatgcccacatttatgccac 274
||||||||||||||||||| || || |||||| || || ||||||||||||||| ||||
Sbjct: 143573587 cagcccttccgactaggggtgcacaagctttagccagccttatgcccacatttataccac 143573646
Query: 275 ccgcctggtccagatgaggcccttcctggtgagccgggccaggcagcgctggggcggggg 334
| || ||||||||| |||||||||||| || ||||| ||||| ||||||| | ||
Sbjct: 143573647 ttgtcttgtccagatggagcccttcctggtaaggtgggcccagcagcactggggcagtgg 143573706
Query: 335 cgtcgtcgtgaagaagctgtgtgagctgcagcccggggagaagtgctgtgtggtcgggac 394
|| | || || |||||||| ||||| || | ||||||||||||| |||| |||||
Sbjct: 143573707 aatcct----aataaactgtgtgaactgcaacctgaggagaagtgctgtatggtggggac 143573762
Query: 395 cctcttcaaggccatgcagctccagccctccatcctgcgggaagtcagcgaagagcacaa 454
||||||||||||||||| |||||||||||||| |||| |||| ||||| | |||||||||
Sbjct: 143573763 cctcttcaaggccatgccgctccagccctccaccctgagggaggtcagtgtagagcacaa 143573822
Query: 455 cctgctcccccagcctcctcggagcaaatacatccacccggatgacgagctgatcttgga 514
||| ||||||||||||| ||||||||||||||| ||| || ||||| ||||
Sbjct: 143573823 tctgttcccccagcctccctggagcaaatacatcctcccaga-------ctgattgtgga 143573875
Query: 515 agatgaattgcagcgcatcaaactggagggcgccattgacgtgtccaagctggtcacagg 574
||| ||| |||| | | |||||| || ||| ||| ||| ||| | ||||||| ||||||
Sbjct: 143573876 agaggaactgcaacatagcaaactagaaggcaccactgatgtgccaaagctgggcacagg 143573935
Query: 575 gacggtcctggccctgctgggctccgcgggggatgacgggaagttcctggtggaggacca 634
|| |||||||| | ||||||||| || || | |||| || |||||||| ||||||||||
Sbjct: 143573936 gatggtcctggacatgctgggctaggcaggaggtgacaggcagttcctgatggaggacca 143573995
Query: 635 ctgctttgcagggcttgcccctcagaagcccacacgccccctcgacacagacaggtttgt 694
||| |||||||| || |||||||||||||| ||||||| ||| |||||||| | ||||||
Sbjct: 143573996 ctgttttgcaggcctcgcccctcagaagcctacacgcctccttgacacagaaaagtttgt 143574055
Query: 695 gttgctggtgtctggtctgggcctgggtggaggcgggggtgagagcctgctgggcaccca 754
| |||| ||||| || |||||||| ||||||| | |||||||||||||||||||||||||
Sbjct: 143574056 gctgctagtgtccggcctgggcctcggtggagacaggggtgagagcctgctgggcaccca 143574115
Query: 755 gctgctggtggacgtggtgacggggcagcttggagacgaaggggagtagtgcagtgccgc 814
|||||||||||| |||||||||||||||| ||| || |||||||| ||||||| ||
Sbjct: 143574116 gctgctggtggatgtggtgacggggcagcctggggaagaagggga-----gcagtgctgc 143574170
Query: 815 ccacgtctcccgggtcatcctcgccgggaacctcctcagccataacacccagagcagaga 874
||| |||||| |||||||||| || |||||||||| ||||| |||| ||||||| |||
Sbjct: 143574171 tcacatctccctggtcatcctcaccaggaacctcctgagccacaacatgcagagcaaaga 143574230
Query: 875 ttccatcaacaaggccaagtacctgaccaagaagacgcaggcagccagcgtggaggccgt 934
||||||||| ||||||||| |||| |||||||| || ||||||||||| ||||||||| |
Sbjct: 143574231 ttccatcaataaggccaagcacctaaccaagaaaacccaggcagccagagtggaggccat 143574290
Query: 935 caagatgctggacgagatcctcctgcagctgagtgcctccgtgcccgtggacgtgatgcc 994
|||||||||||| |||||||| | |||| ||||||||||| |||| | | ||||| ||
Sbjct: 143574291 caagatgctggatgagatcctgcagcagtggagtgcctccgggcccataaatgtgatccc 143574350
Query: 995 aggcgaatttgacccgaccaactacacgctcccccagcagcccctgcac 1043
||| |||| |||||| || ||||||| || | ||||||||||||||||
Sbjct: 143574351 aggtgaatctgacccaactgactacacacttctccagcagcccctgcac 143574399
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,181,579
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 12
Length of query: 1067
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1046
Effective length of database: 2,808,413,156
Effective search space: 2937600161176
Effective search space used: 2937600161176
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)