Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004495
(1174 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694094.1| PREDICTED: hypothetical protein [Bos taurus]. 427 e-120
Alignment gi|XP_580530.4| PREDICTED: hypothetical protein [Bos taurus]. 427 e-120
>ref|XP_002694094.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 327
Score = 427 bits (1099), Expect = e-120
Identities = 220/331 (66%), Positives = 236/331 (71%)
Frame = +2
Query: 116 MSPPAPPTELMPSERIVVLLSCVLSALGSGLLVATHALWPDXXXXXXXXXXXXXXXXXXX 295
M P PPTEL+PSER VVLLSCVLSALGSGLL+ATHALWPD
Sbjct: 1 MPLPVPPTELVPSERAVVLLSCVLSALGSGLLMATHALWPDLRSQARRLLLFLSLADLLS 60
Query: 296 XTSYFYGVLRDFEGPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRTVRGQGASRL 475
SYFYGVL+DF+ SWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRT G RL
Sbjct: 61 AASYFYGVLQDFKDSSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRTAHGSETGRL 120
Query: 476 FWAFHIVSWGVPLAITMAAVALKKIGYDASDVSVGWCWINLEAEDYVLWMLLTGKLWEXX 655
WAFH++SWGVPLAIT+AAVALKKIGYDASDVSVGWCWINLEAED VLWMLLTGKLWE
Sbjct: 121 LWAFHVISWGVPLAITVAAVALKKIGYDASDVSVGWCWINLEAEDRVLWMLLTGKLWELL 180
Query: 656 XXXXXXXXXXXVRKHISRAHEALSEYRPTISETHQLRGRSSVADKKLVLIPLIFICLRVW 835
+RKHI RAHE LSEYRP +SE HQL+ R+SVA+KKLVLIPLIFICLRVW
Sbjct: 181 AYVTLPVLYLLIRKHIHRAHEELSEYRPILSEAHQLQRRTSVANKKLVLIPLIFICLRVW 240
Query: 836 STVRFVLTLCGSPAXXXXXXXXXXXXXNTFQGGANCIMFALCTQAVRTRLLXXXXXXXXX 1015
STVRFVLTLCGSPA NTFQGGANCIMF CT+ VRTRLL
Sbjct: 241 STVRFVLTLCGSPAVRMPVLVVLHGIGNTFQGGANCIMFVFCTRVVRTRLLSLCCCCCSP 300
Query: 1016 XXXXXXXEGPPAASAPIKAGKSQGPSWAPDQ 1108
PP A AP K G+SQ P P++
Sbjct: 301 Q--------PPEAPAPSKRGESQRPRRTPNE 323
>ref|XP_580530.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 327
Score = 427 bits (1099), Expect = e-120
Identities = 220/331 (66%), Positives = 236/331 (71%)
Frame = +2
Query: 116 MSPPAPPTELMPSERIVVLLSCVLSALGSGLLVATHALWPDXXXXXXXXXXXXXXXXXXX 295
M P PPTEL+PSER VVLLSCVLSALGSGLL+ATHALWPD
Sbjct: 1 MPLPVPPTELVPSERAVVLLSCVLSALGSGLLMATHALWPDLRSQARRLLLFLSLADLLS 60
Query: 296 XTSYFYGVLRDFEGPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRTVRGQGASRL 475
SYFYGVL+DF+ SWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRT G RL
Sbjct: 61 AASYFYGVLQDFKDSSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRTAHGSETGRL 120
Query: 476 FWAFHIVSWGVPLAITMAAVALKKIGYDASDVSVGWCWINLEAEDYVLWMLLTGKLWEXX 655
WAFH++SWGVPLAIT+AAVALKKIGYDASDVSVGWCWINLEAED VLWMLLTGKLWE
Sbjct: 121 LWAFHVISWGVPLAITVAAVALKKIGYDASDVSVGWCWINLEAEDRVLWMLLTGKLWELL 180
Query: 656 XXXXXXXXXXXVRKHISRAHEALSEYRPTISETHQLRGRSSVADKKLVLIPLIFICLRVW 835
+RKHI RAHE LSEYRP +SE HQL+ R+SVA+KKLVLIPLIFICLRVW
Sbjct: 181 AYVTLPVLYLLIRKHIHRAHEELSEYRPILSEAHQLQRRTSVANKKLVLIPLIFICLRVW 240
Query: 836 STVRFVLTLCGSPAXXXXXXXXXXXXXNTFQGGANCIMFALCTQAVRTRLLXXXXXXXXX 1015
STVRFVLTLCGSPA NTFQGGANCIMF CT+ VRTRLL
Sbjct: 241 STVRFVLTLCGSPAVRMPVLVVLHGIGNTFQGGANCIMFVFCTRVVRTRLLSLCCCCCSP 300
Query: 1016 XXXXXXXEGPPAASAPIKAGKSQGPSWAPDQ 1108
PP A AP K G+SQ P P++
Sbjct: 301 Q--------PPEAPAPSKRGESQRPRRTPNE 323
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,497,925
Number of extensions: 1340927
Number of successful extensions: 9812
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9284
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,240,222
Effective search space: 4086943714
Effective search space used: 4086943714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004495
(1174 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850584.1| PREDICTED: similar to G protein-coupled recepto... 419 e-117
Alignment gi|NP_001041575.1| CD97 antigen [Canis lupus familiaris]. 56 6e-08
Alignment gi|XP_850844.1| PREDICTED: similar to keratin associated protei... 50 4e-06
Alignment gi|XP_549793.2| PREDICTED: similar to keratin associated protei... 50 5e-06
>ref|XP_850584.1| PREDICTED: similar to G protein-coupled receptor 157 [Canis
familiaris].
Length = 420
Score = 419 bits (1076), Expect = e-117
Identities = 215/318 (67%), Positives = 228/318 (71%)
Frame = +2
Query: 155 ERIVVLLSCVLSALGSGLLVATHALWPDXXXXXXXXXXXXXXXXXXXXTSYFYGVLRDFE 334
+R VVLLSC LSALGSGLLVATHALWPD SYFYGVL+DF
Sbjct: 100 QRAVVLLSCALSALGSGLLVATHALWPDLRSRARRLLLFLSLADLLSAASYFYGVLQDFA 159
Query: 335 GPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRTVRGQGASRLFWAFHIVSWGVPL 514
GPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVR R RL WAFH+VSWGVPL
Sbjct: 160 GPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRAAREPRTGRLLWAFHVVSWGVPL 219
Query: 515 AITMAAVALKKIGYDASDVSVGWCWINLEAEDYVLWMLLTGKLWEXXXXXXXXXXXXXVR 694
AIT+AAVALKKIGYDASDVSVGWCWI+LEAED +LWMLLTGKLWE +R
Sbjct: 220 AITVAAVALKKIGYDASDVSVGWCWIDLEAEDRILWMLLTGKLWEMLAYVTLPVLYLLIR 279
Query: 695 KHISRAHEALSEYRPTISETHQLRGRSSVADKKLVLIPLIFICLRVWSTVRFVLTLCGSP 874
KHI+RAHEALSEYRP +SE HQL+ R+SVADKKL+LIPLIFICLRVWSTVRFVLTLCGSP
Sbjct: 280 KHINRAHEALSEYRPILSEAHQLQRRASVADKKLILIPLIFICLRVWSTVRFVLTLCGSP 339
Query: 875 AXXXXXXXXXXXXXNTFQGGANCIMFALCTQAVRTRLLXXXXXXXXXXXXXXXXEGPPAA 1054
A NTFQGGANCIMF LCTQAVRTRL GPP A
Sbjct: 340 AVRSPVLVVLHGIGNTFQGGANCIMFVLCTQAVRTRLF-SVCSCCSSQPSTENPTGPPKA 398
Query: 1055 SAPIKAGKSQGPSWAPDQ 1108
AP K G SQG PD+
Sbjct: 399 PAPSKTGDSQGSRRTPDE 416
>ref|NP_001041575.1| CD97 antigen [Canis lupus familiaris].
Length = 831
Score = 56.2 bits (134), Expect = 6e-08
Identities = 35/111 (31%), Positives = 51/111 (45%)
Frame = +2
Query: 299 TSYFYGVLRDFEGPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRTVRGQGASRLF 478
T + G+ + + C L L + +F W L LY +VR RGQG S+
Sbjct: 592 TIFLVGIENEGDQVGLRCRLVAGLLHYFFLGAFCWMSLEGLELYFLVVRVFRGQGLSK-- 649
Query: 479 WAFHIVSWGVPLAITMAAVALKKIGYDASDVSVGWCWINLEAEDYVLWMLL 631
W ++ +GVPL I + A+K GY + +CW+N ED LW L
Sbjct: 650 WQLCLIGYGVPLVIVAISAAVKSKGYG----YILYCWLN--REDGFLWSFL 694
>ref|XP_850844.1| PREDICTED: similar to keratin associated protein 4-12 isoform 2
[Canis familiaris].
Length = 218
Score = 50.1 bits (118), Expect = 4e-06
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 18/122 (14%)
Frame = +3
Query: 168 CCYHACCPRSARACWWPRTPCGPTCAAGRGAYCSSCRWLTCSRPPPTSTGCCGTSRAPP- 344
CC CC S R C + G SC +C RP +S+ CCG+S P
Sbjct: 93 CCRTTCCRPSCCVSSCCRPSCSSSSCCGSSCCRPSCCISSCCRPSCSSSSCCGSSCCRPS 152
Query: 345 -----------------GTACFRARCPPSPTPAPSSGRWPSPSTCISASSALYAGRGPVA 473
G++C R C PS P GR +TC + + P+
Sbjct: 153 CCISSCCRPSCCGSSSCGSSCCRPSCCPSCCLRPVCGRVSCHTTCYRPTCVISTCPRPMC 212
Query: 474 CS 479
C+
Sbjct: 213 CA 214
>ref|XP_549793.2| PREDICTED: similar to keratin associated protein 4-12 isoform 1
[Canis familiaris].
Length = 210
Score = 49.7 bits (117), Expect = 5e-06
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 19/123 (15%)
Frame = +3
Query: 168 CCYHACC-PRSARACWWPRTPCGPTCAAGRGAYCSSCRWLTCSRPPPTSTGCCGTSRAPP 344
CC +CC P + T C P+C SC +C RP +S+ CCG+S P
Sbjct: 90 CCISSCCRPSCCQTTCCRTTCCRPSCCV------PSCCISSCCRPSCSSSSCCGSSCCRP 143
Query: 345 ------------------GTACFRARCPPSPTPAPSSGRWPSPSTCISASSALYAGRGPV 470
G++C R C PS P GR +TC + + P+
Sbjct: 144 SCCISSCCRPSCCGSSSCGSSCCRPSCCPSCCLRPVCGRVSCHTTCYRPTCVISTCPRPM 203
Query: 471 ACS 479
C+
Sbjct: 204 CCA 206
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,151,593
Number of extensions: 1352009
Number of successful extensions: 10436
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9931
Number of HSP's successfully gapped: 4
Length of query: 391
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 286
Effective length of database: 15,374,224
Effective search space: 4397028064
Effective search space used: 4397028064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004495
(1174 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079256.4| probable G-protein coupled receptor 157 [Homo s... 422 e-118
>ref|NP_079256.4| probable G-protein coupled receptor 157 [Homo sapiens].
Length = 335
Score = 422 bits (1084), Expect = e-118
Identities = 217/331 (65%), Positives = 233/331 (70%)
Frame = +2
Query: 116 MSPPAPPTELMPSERIVVLLSCVLSALGSGLLVATHALWPDXXXXXXXXXXXXXXXXXXX 295
M P PPTEL+PSER VVLLSC LSALGSGLLVATHALWPD
Sbjct: 1 MQPSPPPTELVPSERAVVLLSCALSALGSGLLVATHALWPDLRSRARRLLLFLSLADLLS 60
Query: 296 XTSYFYGVLRDFEGPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRTVRGQGASRL 475
SYFYGVL++F GPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVR RG RL
Sbjct: 61 AASYFYGVLQNFAGPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRAARGPRTDRL 120
Query: 476 FWAFHIVSWGVPLAITMAAVALKKIGYDASDVSVGWCWINLEAEDYVLWMLLTGKLWEXX 655
WAFH+VSWGVPL IT+AAVALKKIGYDASDVSVGWCWI+LEA+D+VLWMLLTGKLWE
Sbjct: 121 LWAFHVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDLEAKDHVLWMLLTGKLWEML 180
Query: 656 XXXXXXXXXXXVRKHISRAHEALSEYRPTISETHQLRGRSSVADKKLVLIPLIFICLRVW 835
VRKHI+RAH ALSEYRP +S+ H+L SS+ADKKLVLIPLIFI LRVW
Sbjct: 181 AYVLLPLLYLLVRKHINRAHTALSEYRPILSQEHRLLRHSSMADKKLVLIPLIFIGLRVW 240
Query: 836 STVRFVLTLCGSPAXXXXXXXXXXXXXNTFQGGANCIMFALCTQAVRTRLLXXXXXXXXX 1015
STVRFVLTLCGSPA NTFQGGANCIMF LCT+AVRTRL
Sbjct: 241 STVRFVLTLCGSPAVQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRLFSLCCCCCSS 300
Query: 1016 XXXXXXXEGPPAASAPIKAGKSQGPSWAPDQ 1108
G P A AP K G+SQ P +
Sbjct: 301 QPPTKSPAGTPKAPAPSKPGESQESQGTPGE 331
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,927,088
Number of extensions: 1298595
Number of successful extensions: 9041
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8563
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 286
Effective length of database: 14,835,944
Effective search space: 4243079984
Effective search space used: 4243079984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004495
(1174 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_796340.2| probable G-protein coupled receptor 157 [Mus mu... 413 e-115
Alignment gi|XP_003085567.1| PREDICTED: hypothetical protein LOC100502865... 52 1e-06
Alignment gi|XP_003085802.1| PREDICTED: hypothetical protein LOC100502865... 52 1e-06
Alignment gi|NP_001182312.1| hypothetical protein LOC666021 [Mus musculus]. 52 1e-06
>ref|NP_796340.2| probable G-protein coupled receptor 157 [Mus musculus].
Length = 330
Score = 413 bits (1062), Expect = e-115
Identities = 217/331 (65%), Positives = 229/331 (69%), Gaps = 1/331 (0%)
Frame = +2
Query: 116 MSPPAPPTELMPSERIVVLLSCVLSALGSGLLVATHALWPDXXXXXXXXXXXXXXXXXXX 295
M PAPPTEL+P ER VVLLSC LSALGSGLLVATHALWPD
Sbjct: 1 MPSPAPPTELLPWERAVVLLSCALSALGSGLLVATHALWPDLRSRARRLLLFLSLADLLS 60
Query: 296 XTSYFYGVLRDFEGPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRTVRGQGASRL 475
SYFYGVL+DF G SWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRT RG L
Sbjct: 61 AASYFYGVLQDFAGTSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRTTRGPSTDHL 120
Query: 476 FWAFHIVSWGVPLAITMAAVALKKIGYDASDVSVGWCWINLEAEDYVLWMLLTGKLWEXX 655
WAFH++SWGVPLAIT+AAV+LKKIGYDASDVSVGWCWINLEAED VLWMLLTGKLWE
Sbjct: 121 IWAFHLISWGVPLAITVAAVSLKKIGYDASDVSVGWCWINLEAEDRVLWMLLTGKLWEML 180
Query: 656 XXXXXXXXXXXVRKHISRAHEALSEYRPTISETHQLRGRS-SVADKKLVLIPLIFICLRV 832
VRKHI+RAH+ALSEYRP RG S S ADKKLVLIPLIFICLRV
Sbjct: 181 AYILLPLLYLLVRKHINRAHQALSEYRPICEGRQLQRGSSTSTADKKLVLIPLIFICLRV 240
Query: 833 WSTVRFVLTLCGSPAXXXXXXXXXXXXXNTFQGGANCIMFALCTQAVRTRLLXXXXXXXX 1012
WSTVRFVLTLCGSPA NTFQGGANCIMF LCT+AVRTRL
Sbjct: 241 WSTVRFVLTLCGSPAVQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRLF-----SLC 295
Query: 1013 XXXXXXXXEGPPAASAPIKAGKSQGPSWAPD 1105
+ PP A P K G+SQ P+
Sbjct: 296 CCCPRPSTQSPPGAPTPPKIGESQESRRTPE 326
>ref|XP_003085567.1| PREDICTED: hypothetical protein LOC100502865 [Mus musculus].
Length = 239
Score = 51.6 bits (122), Expect = 1e-06
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Frame = +3
Query: 168 CCYHACC-PRSARACWWPRTPCGPTCAAGRGAYCSSCRWLTCSRPPPTSTGCCGTSRAPP 344
CC +CC P+ ++ T C P+C SSCR +C P ++ CCG+S P
Sbjct: 29 CCVSSCCRPQCCQSVCCQPTCCHPSCCI------SSCRVSSCCCPSCVNSSCCGSSSCRP 82
Query: 345 G---TACFRARCPPSPTPAPSSGRWPSPSTCISASSALYAGRGPVACSGLS 488
++C R +C PS PS R S+C S+ L G +C G S
Sbjct: 83 TCCVSSCCRPQCCPSVCYQPSCCR----SSCRSSRCRLCCGSS--SCCGSS 127
>ref|XP_003085802.1| PREDICTED: hypothetical protein LOC100502865 [Mus musculus].
Length = 239
Score = 51.6 bits (122), Expect = 1e-06
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Frame = +3
Query: 168 CCYHACC-PRSARACWWPRTPCGPTCAAGRGAYCSSCRWLTCSRPPPTSTGCCGTSRAPP 344
CC +CC P+ ++ T C P+C SSCR +C P ++ CCG+S P
Sbjct: 29 CCVSSCCRPQCCQSVCCQPTCCHPSCCI------SSCRVSSCCCPSCVNSSCCGSSSCRP 82
Query: 345 G---TACFRARCPPSPTPAPSSGRWPSPSTCISASSALYAGRGPVACSGLS 488
++C R +C PS PS R S+C S+ L G +C G S
Sbjct: 83 TCCVSSCCRPQCCPSVCYQPSCCR----SSCRSSRCRLCCGSS--SCCGSS 127
>ref|NP_001182312.1| hypothetical protein LOC666021 [Mus musculus].
Length = 262
Score = 51.6 bits (122), Expect = 1e-06
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Frame = +3
Query: 168 CCYHACC-PRSARACWWPRTPCGPTCAAGRGAYCSSCRWLTCSRPPPTSTGCCGTSRAPP 344
CC +CC P+ ++ T C P+C SSCR +C P ++ CCG+S P
Sbjct: 29 CCVSSCCRPQCCQSVCCQPTCCHPSCCI------SSCRVSSCCCPSCVNSSCCGSSSCRP 82
Query: 345 G---TACFRARCPPSPTPAPSSGRWPSPSTCISASSALYAGRGPVACSGLS 488
++C R +C PS PS R S+C S+ L G +C G S
Sbjct: 83 TCCVSSCCRPQCCPSVCYQPSCCR----SSCRSSRCRLCCGSS--SCCGSS 127
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,698,183
Number of extensions: 1060097
Number of successful extensions: 7481
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6928
Number of HSP's successfully gapped: 4
Length of query: 391
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 288
Effective length of database: 12,523,851
Effective search space: 3606869088
Effective search space used: 3606869088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004495
(1174 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,414,791
Number of extensions: 901001
Number of successful extensions: 6076
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5786
Number of HSP's successfully gapped: 0
Length of query: 391
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,829,335
Effective search space: 2560507150
Effective search space used: 2560507150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004495
(1174 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,601,863
Number of extensions: 251
Number of successful extensions: 251
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 0
Length of query: 1174
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1153
Effective length of database: 2,808,413,156
Effective search space: 3238100368868
Effective search space used: 3238100368868
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)