Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004503
(973 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070329.1| cytochrome c oxidase assembly protein COX15 ... 561 e-160
>ref|NP_001070329.1| cytochrome c oxidase assembly protein COX15 homolog [Bos taurus].
Length = 413
Score = 561 bits (1447), Expect = e-160
Identities = 273/295 (92%), Positives = 279/295 (94%)
Frame = +2
Query: 89 MQRLLLPPLKVLMGNPCLRLLVPRAAPRTQCGCSCGIRHSLRPGQYSTITEVGLQSGRGT 268
MQRLL PL +G+PCLRLLVPR APRTQCGCSCGIR LRPGQYSTI++V LQ GR T
Sbjct: 1 MQRLLFTPLTAFLGSPCLRLLVPRVAPRTQCGCSCGIRRPLRPGQYSTISDVALQPGRST 60
Query: 269 VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 448
VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTS+EEW
Sbjct: 61 VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSKEEW 120
Query: 449 EAEFQKYQQFPEFKILNHDMTLPEFKFIWYMEYSHRMWGRLVGLAYILPAAYFWRKGWLN 628
EAEFQKYQQFPEFKILNHDMTL EFKFIWYMEYSHRMWGRLVGLAYILPAAYFW+KGWL
Sbjct: 121 EAEFQKYQQFPEFKILNHDMTLAEFKFIWYMEYSHRMWGRLVGLAYILPAAYFWKKGWLT 180
Query: 629 RGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS 808
RGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS
Sbjct: 181 RGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS 240
Query: 809 LWTSLSLLLPQHKLPETRQLLWLRRCAHGTAGLVFLTALSGAFVAGLDAGLVYNS 973
LWTSLSLLLPQHKL ETRQLL LRR AHGTAGLVFLTALSGAFVAGLDAGLVYNS
Sbjct: 241 LWTSLSLLLPQHKLTETRQLLRLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNS 295
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,179,783
Number of extensions: 1069239
Number of successful extensions: 3906
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3893
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004503
(973 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534986.2| PREDICTED: similar to COX15 homolog isoform 1 p... 577 e-165
>ref|XP_534986.2| PREDICTED: similar to COX15 homolog isoform 1 precursor [Canis
familiaris].
Length = 413
Score = 577 bits (1488), Expect = e-165
Identities = 277/295 (93%), Positives = 283/295 (95%)
Frame = +2
Query: 89 MQRLLLPPLKVLMGNPCLRLLVPRAAPRTQCGCSCGIRHSLRPGQYSTITEVGLQSGRGT 268
MQRLL PPLK +G+PCLRLLVPRAAPR QCGCSCGIR LRPGQYSTI+EV LQSGRGT
Sbjct: 1 MQRLLFPPLKAFVGSPCLRLLVPRAAPRAQCGCSCGIRRPLRPGQYSTISEVALQSGRGT 60
Query: 269 VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 448
V LPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW
Sbjct: 61 VPLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 120
Query: 449 EAEFQKYQQFPEFKILNHDMTLPEFKFIWYMEYSHRMWGRLVGLAYILPAAYFWRKGWLN 628
E EFQKYQQFPEFKILNHDMTL EFKFIWYMEYSHRMWGRLVGLAYILPA YFWRKGWL+
Sbjct: 121 ETEFQKYQQFPEFKILNHDMTLAEFKFIWYMEYSHRMWGRLVGLAYILPAVYFWRKGWLS 180
Query: 629 RGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS 808
RG+KGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS
Sbjct: 181 RGMKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS 240
Query: 809 LWTSLSLLLPQHKLPETRQLLWLRRCAHGTAGLVFLTALSGAFVAGLDAGLVYNS 973
LWT+LSLLL QHKLPETRQLLWLRRCAHGTAGLVFLTALSGAFVAGLDAGLVYNS
Sbjct: 241 LWTALSLLLSQHKLPETRQLLWLRRCAHGTAGLVFLTALSGAFVAGLDAGLVYNS 295
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,696,139
Number of extensions: 1089598
Number of successful extensions: 3955
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3953
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004503
(973 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004367.2| cytochrome c oxidase assembly protein COX15 hom... 540 e-153
Alignment gi|NP_510870.1| cytochrome c oxidase assembly protein COX15 hom... 540 e-153
>ref|NP_004367.2| cytochrome c oxidase assembly protein COX15 homolog isoform 2 [Homo
sapiens].
Length = 388
Score = 540 bits (1390), Expect = e-153
Identities = 267/295 (90%), Positives = 272/295 (92%)
Frame = +2
Query: 89 MQRLLLPPLKVLMGNPCLRLLVPRAAPRTQCGCSCGIRHSLRPGQYSTITEVGLQSGRGT 268
MQRLL PPL+ L G L LL PRAAPR QC C IR LRPGQYSTI+EV LQSGRGT
Sbjct: 1 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDC---IRRPLRPGQYSTISEVALQSGRGT 57
Query: 269 VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 448
VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW
Sbjct: 58 VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 117
Query: 449 EAEFQKYQQFPEFKILNHDMTLPEFKFIWYMEYSHRMWGRLVGLAYILPAAYFWRKGWLN 628
EAEFQ+YQQFPEFKILNHDMTL EFKFIWYMEYSHRMWGRLVGL YILPAAYFWRKGWL+
Sbjct: 118 EAEFQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLS 177
Query: 629 RGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS 808
RG+KGRVLALCGLVCFQGLLGWYMVKSGLEEK DSHDIPRVSQYRLAAHLGSALVLYCAS
Sbjct: 178 RGMKGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCAS 237
Query: 809 LWTSLSLLLPQHKLPETRQLLWLRRCAHGTAGLVFLTALSGAFVAGLDAGLVYNS 973
LWTSLSLLLP HKLPET QLL LRR AHGTAGLVFLTALSGAFVAGLDAGLVYNS
Sbjct: 238 LWTSLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNS 292
>ref|NP_510870.1| cytochrome c oxidase assembly protein COX15 homolog isoform 1 [Homo
sapiens].
Length = 410
Score = 540 bits (1390), Expect = e-153
Identities = 267/295 (90%), Positives = 272/295 (92%)
Frame = +2
Query: 89 MQRLLLPPLKVLMGNPCLRLLVPRAAPRTQCGCSCGIRHSLRPGQYSTITEVGLQSGRGT 268
MQRLL PPL+ L G L LL PRAAPR QC C IR LRPGQYSTI+EV LQSGRGT
Sbjct: 1 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDC---IRRPLRPGQYSTISEVALQSGRGT 57
Query: 269 VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 448
VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW
Sbjct: 58 VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 117
Query: 449 EAEFQKYQQFPEFKILNHDMTLPEFKFIWYMEYSHRMWGRLVGLAYILPAAYFWRKGWLN 628
EAEFQ+YQQFPEFKILNHDMTL EFKFIWYMEYSHRMWGRLVGL YILPAAYFWRKGWL+
Sbjct: 118 EAEFQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLS 177
Query: 629 RGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS 808
RG+KGRVLALCGLVCFQGLLGWYMVKSGLEEK DSHDIPRVSQYRLAAHLGSALVLYCAS
Sbjct: 178 RGMKGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCAS 237
Query: 809 LWTSLSLLLPQHKLPETRQLLWLRRCAHGTAGLVFLTALSGAFVAGLDAGLVYNS 973
LWTSLSLLLP HKLPET QLL LRR AHGTAGLVFLTALSGAFVAGLDAGLVYNS
Sbjct: 238 LWTSLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNS 292
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,129,244
Number of extensions: 1078149
Number of successful extensions: 3980
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3960
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004503
(973 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659123.2| cytochrome c oxidase assembly protein COX15 hom... 548 e-156
>ref|NP_659123.2| cytochrome c oxidase assembly protein COX15 homolog [Mus musculus].
Length = 413
Score = 548 bits (1412), Expect = e-156
Identities = 268/295 (90%), Positives = 277/295 (93%)
Frame = +2
Query: 89 MQRLLLPPLKVLMGNPCLRLLVPRAAPRTQCGCSCGIRHSLRPGQYSTITEVGLQSGRGT 268
MQRLLLP L+ L G+ + LLVPR A RTQCG SCG + LRPGQYSTITEV LQSG+GT
Sbjct: 1 MQRLLLPSLRALTGSRNVGLLVPRVASRTQCGSSCGSQRPLRPGQYSTITEVALQSGKGT 60
Query: 269 VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 448
VSLPS+AAER VGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW
Sbjct: 61 VSLPSRAAERAVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 120
Query: 449 EAEFQKYQQFPEFKILNHDMTLPEFKFIWYMEYSHRMWGRLVGLAYILPAAYFWRKGWLN 628
EAEFQKYQQFPEFKILNHDMTL EFKFIWYMEYSHRMWGR VGLAYILPAAYFWRKGWLN
Sbjct: 121 EAEFQKYQQFPEFKILNHDMTLAEFKFIWYMEYSHRMWGRAVGLAYILPAAYFWRKGWLN 180
Query: 629 RGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS 808
RG+KGRVLALCGLVCFQGLLGWYMVKSGLEEKP+S+DIPRVSQYRLAAHLGSALVLYCAS
Sbjct: 181 RGMKGRVLALCGLVCFQGLLGWYMVKSGLEEKPESYDIPRVSQYRLAAHLGSALVLYCAS 240
Query: 809 LWTSLSLLLPQHKLPETRQLLWLRRCAHGTAGLVFLTALSGAFVAGLDAGLVYNS 973
LWTSLSLLLPQHKLPETRQLLWLRR A GTAGLVFLTALSGAFVAGLDAGLVYNS
Sbjct: 241 LWTSLSLLLPQHKLPETRQLLWLRRFAGGTAGLVFLTALSGAFVAGLDAGLVYNS 295
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,229,319
Number of extensions: 911386
Number of successful extensions: 3271
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3263
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004503
(973 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929366.1| PREDICTED: cytochrome c oxidase assembly pro... 611 e-175
>ref|XP_001929366.1| PREDICTED: cytochrome c oxidase assembly protein COX15 homolog [Sus
scrofa].
Length = 413
Score = 611 bits (1576), Expect = e-175
Identities = 295/295 (100%), Positives = 295/295 (100%)
Frame = +2
Query: 89 MQRLLLPPLKVLMGNPCLRLLVPRAAPRTQCGCSCGIRHSLRPGQYSTITEVGLQSGRGT 268
MQRLLLPPLKVLMGNPCLRLLVPRAAPRTQCGCSCGIRHSLRPGQYSTITEVGLQSGRGT
Sbjct: 1 MQRLLLPPLKVLMGNPCLRLLVPRAAPRTQCGCSCGIRHSLRPGQYSTITEVGLQSGRGT 60
Query: 269 VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 448
VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW
Sbjct: 61 VSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEW 120
Query: 449 EAEFQKYQQFPEFKILNHDMTLPEFKFIWYMEYSHRMWGRLVGLAYILPAAYFWRKGWLN 628
EAEFQKYQQFPEFKILNHDMTLPEFKFIWYMEYSHRMWGRLVGLAYILPAAYFWRKGWLN
Sbjct: 121 EAEFQKYQQFPEFKILNHDMTLPEFKFIWYMEYSHRMWGRLVGLAYILPAAYFWRKGWLN 180
Query: 629 RGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS 808
RGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS
Sbjct: 181 RGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCAS 240
Query: 809 LWTSLSLLLPQHKLPETRQLLWLRRCAHGTAGLVFLTALSGAFVAGLDAGLVYNS 973
LWTSLSLLLPQHKLPETRQLLWLRRCAHGTAGLVFLTALSGAFVAGLDAGLVYNS
Sbjct: 241 LWTSLSLLLPQHKLPETRQLLWLRRCAHGTAGLVFLTALSGAFVAGLDAGLVYNS 295
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,598,476
Number of extensions: 686422
Number of successful extensions: 2492
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2488
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004503
(973 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 387 e-105
>Sscrofa_Chr14
|| Length = 153851969
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 177 agtgtggttgcagctgtgggatcaggcactccttgaggccagggcaatatagcaccatca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120339754 agtgtggttgcagctgtgggatcaggcactccttgaggccagggcaatatagcaccatca 120339695
Query: 237 ctgaagtaggtttgcagtctggaaggggtacagtgtcccttccttcaaaggctgctgagc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120339694 ctgaagtaggtttgcagtctggaaggggtacagtgtcccttccttcaaaggctgctgagc 120339635
Query: 297 gggtggtgggccgatggctcctggtctgcagtggaacagtggctggagcagttattcttg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120339634 gggtggtgggccgatggctcctggtctgcagtggaacagtggctggagcagttattcttg 120339575
Query: 357 gtggagtaactaggt 371
|||||||||||||||
Sbjct: 120339574 gtggagtaactaggt 120339560
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 493 cctgaatcatgatatgacgttgccagaattcaagttcatctggtatatggagtactcaca 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120338273 cctgaatcatgatatgacgttgccagaattcaagttcatctggtatatggagtactcaca 120338214
Query: 553 tcggatgtggggtcgccttgtagggctcgcgtacatcctgcctgctgcctacttttggag 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120338213 tcggatgtggggtcgccttgtagggctcgcgtacatcctgcctgctgcctacttttggag 120338154
Query: 613 aaagggctggctcaaccgtggcctgaaaggacgtgttcttgccctctgtggtttagtctg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120338153 aaagggctggctcaaccgtggcctgaaaggacgtgttcttgccctctgtggtttagtctg 120338094
Query: 673 cttccagg 680
||||||||
Sbjct: 120338093 cttccagg 120338086
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 678 agggcctgttgggatggtatatggtgaaaagtggattagaagaaaaaccagattcccatg 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120335762 agggcctgttgggatggtatatggtgaaaagtggattagaagaaaaaccagattcccatg 120335703
Query: 738 acatccctcgggtcagccagtaccgcctcgctgcccacctgggatcagcccttgttcttt 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120335702 acatccctcgggtcagccagtaccgcctcgctgcccacctgggatcagcccttgttcttt 120335643
Query: 798 actgcgccagcttgtggacctcgctgtcactgctgctacctcagcacaag 847
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120335642 actgcgccagcttgtggacctcgctgtcactgctgctacctcagcacaag 120335593
Score = 337 bits (170), Expect = 7e-90
Identities = 176/178 (98%)
Strand = Plus / Minus
Query: 1 acccggaagtgcttctccagtcggtggcggagaaaggagactactgagagtcagggggtg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 120341123 acccggaagtgcttctccagtcggtggcggagaaaggggactactgagagtcagggggtg 120341064
Query: 61 aaggcggaggttgtgcactgttgctagtatgcagcgattactccttccgcccttgaaggt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 120341063 aaggcggaggttgtgcactgttgttagtatgcagcgattactccttccgcccttgaaggt 120341004
Query: 121 cttgatggggaacccgtgtctccgactcctggttcctagggcggcgcctaggacgcag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120341003 cttgatggggaacccgtgtctccgactcctggttcctagggcggcgcctaggacgcag 120340946
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 368 aggttgacagagtctggcctctccatggtagactggcatttaattaaagagatgaagcca 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120338683 aggttgacagagtctggcctctccatggtagactggcatttaattaaagagatgaagcca 120338624
Query: 428 cctacaagccaggaggaatgggaagcagaattccaaaaataccagcagtttccagaattt 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120338623 cctacaagccaggaggaatgggaagcagaattccaaaaataccagcagtttccagaattt 120338564
Query: 488 aaaat 492
|||||
Sbjct: 120338563 aaaat 120338559
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 846 agttgcctgaaacccgtcaactcctgtggttgagacgatgtgctcatgggacagcaggcc 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120332876 agttgcctgaaacccgtcaactcctgtggttgagacgatgtgctcatgggacagcaggcc 120332817
Query: 906 tggtattccttacggctctctcagg 930
|||||||||||||||||||||||||
Sbjct: 120332816 tggtattccttacggctctctcagg 120332792
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 928 aggggcttttgtggcagggctggatgctggccttgtttataactcc 973
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120331136 aggggcttttgtggcagggctggatgctggccttgtttataactcc 120331091
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,844,631
Number of extensions: 153
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 7
Length of query: 973
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 952
Effective length of database: 2,808,413,156
Effective search space: 2673609324512
Effective search space used: 2673609324512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)