Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004515
(1135 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192523.1| phosphoenolpyruvate carboxykinase [GTP], mit... 385 e-107
Alignment gi|XP_002690545.1| PREDICTED: phosphoenolpyruvate carboxykinase... 385 e-107
Alignment gi|NP_777162.1| phosphoenolpyruvate carboxykinase, cytosolic [G... 265 7e-71
>ref|NP_001192523.1| phosphoenolpyruvate carboxykinase [GTP], mitochondrial [Bos
taurus].
Length = 640
Score = 385 bits (988), Expect = e-107
Identities = 192/220 (87%), Positives = 196/220 (89%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLPA VRDFVE SARLCQPEGIHIC
Sbjct: 4 VYRPGLRLSWHRLSPWGWASRCSIQTLRVLSGDLGQLPAKVRDFVEHSARLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
AGGARGQLGNWMSPAEFQQAVDERFPGCM GRTMYV+PFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 AGGARGQLGNWMSPAEFQQAVDERFPGCMLGRTMYVIPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLG PVLQALGDGDFVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGE 223
>ref|XP_002690545.1| PREDICTED: phosphoenolpyruvate carboxykinase 2 (mitochondrial) [Bos
taurus].
Length = 640
Score = 385 bits (988), Expect = e-107
Identities = 192/220 (87%), Positives = 196/220 (89%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLPA VRDFVE SARLCQPEGIHIC
Sbjct: 4 VYRPGLRLSWHRLSPWGWASRCSIQTLRVLSGDLGQLPAKVRDFVEHSARLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
AGGARGQLGNWMSPAEFQQAVDERFPGCM GRTMYV+PFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 AGGARGQLGNWMSPAEFQQAVDERFPGCMLGRTMYVIPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLG PVLQALGDGDFVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGE 223
>ref|NP_777162.1| phosphoenolpyruvate carboxykinase, cytosolic [GTP] [Bos taurus].
Length = 622
Score = 265 bits (676), Expect = 7e-71
Identities = 122/188 (64%), Positives = 155/188 (82%)
Frame = +2
Query: 188 RVLNGDLGQLPAGVRDFVERSARLCQPEGIHICDGTEAENTATLALLEQQGLIRKLPKYN 367
+++ G L LP VR FVE SA+LC+P+ +HICDG+E EN L+ +E++G+I++L KY+
Sbjct: 14 KIVRGSLDSLPQAVRSFVESSAKLCRPDQVHICDGSEEENRQLLSHMEEEGVIKRLKKYD 73
Query: 368 NCWLARTDPKDVARVESKTVIVTPSQRDTVPLPAGGARGQLGNWMSPAEFQQAVDERFPG 547
NCWLA TDP+DVAR+ESKTVI+T QRDTVP+P G QLG WMS +F++A + RFPG
Sbjct: 74 NCWLALTDPRDVARIESKTVIITREQRDTVPIPKNGL-SQLGRWMSEEDFEKAFNIRFPG 132
Query: 548 CMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLGKPVLQALGDGDFVKC 727
CM+GRTMYV+PFSMGP+GSPLS+IG++LTDS YVV SMRIMTR+G VL+ALGDG+FVKC
Sbjct: 133 CMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVTSMRIMTRMGTSVLEALGDGEFVKC 192
Query: 728 LHSVGQPL 751
LHSVG PL
Sbjct: 193 LHSVGCPL 200
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,657,746
Number of extensions: 1631099
Number of successful extensions: 5755
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5728
Number of HSP's successfully gapped: 3
Length of query: 378
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,240,222
Effective search space: 3901820828
Effective search space used: 3901820828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004515
(1135 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859768.1| PREDICTED: similar to mitochondrial phosphoenol... 379 e-105
Alignment gi|XP_859702.1| PREDICTED: similar to mitochondrial phosphoenol... 377 e-105
Alignment gi|XP_859670.1| PREDICTED: similar to mitochondrial phosphoenol... 377 e-105
Alignment gi|XP_859642.1| PREDICTED: similar to mitochondrial phosphoenol... 377 e-105
Alignment gi|XP_859612.1| PREDICTED: similar to mitochondrial phosphoenol... 377 e-105
Alignment gi|XP_859577.1| PREDICTED: similar to mitochondrial phosphoenol... 377 e-105
Alignment gi|XP_537379.2| PREDICTED: similar to mitochondrial phosphoenol... 377 e-105
Alignment gi|XP_859735.1| PREDICTED: similar to mitochondrial phosphoenol... 377 e-104
Alignment gi|NP_001184072.1| phosphoenolpyruvate carboxykinase, cytosolic... 267 1e-71
>ref|XP_859768.1| PREDICTED: similar to mitochondrial phosphoenolpyruvate
carboxykinase 2 isoform 1 precursor isoform 8 [Canis
familiaris].
Length = 644
Score = 379 bits (974), Expect = e-105
Identities = 189/222 (85%), Positives = 197/222 (88%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLPAGVRDFVERSA LCQPEGIHIC
Sbjct: 4 VYRPGLRLSWPGLSPWGWSSWRSIQTLRVLSGDLGQLPAGVRDFVERSAHLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DG+E+ENTATL LLE+QGLIRKLPKY+NCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGSESENTATLTLLEKQGLIRKLPKYDNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
A GARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 ADGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGKHL 772
VVASMRIMTRLG PVL+ALGDG+FVKCLHSVGQPLTGQGK L
Sbjct: 184 VVASMRIMTRLGMPVLRALGDGNFVKCLHSVGQPLTGQGKCL 225
>ref|XP_859702.1| PREDICTED: similar to mitochondrial phosphoenolpyruvate
carboxykinase 2 isoform 1 precursor isoform 6 [Canis
familiaris].
Length = 642
Score = 377 bits (969), Expect = e-105
Identities = 187/220 (85%), Positives = 196/220 (89%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLPAGVRDFVERSA LCQPEGIHIC
Sbjct: 4 VYRPGLRLSWPGLSPWGWSSWRSIQTLRVLSGDLGQLPAGVRDFVERSAHLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DG+E+ENTATL LLE+QGLIRKLPKY+NCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGSESENTATLTLLEKQGLIRKLPKYDNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
A GARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 ADGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLG PVL+ALGDG+FVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGMPVLRALGDGNFVKCLHSVGQPLTGQGE 223
>ref|XP_859670.1| PREDICTED: similar to mitochondrial phosphoenolpyruvate
carboxykinase 2 isoform 1 precursor isoform 5 [Canis
familiaris].
Length = 647
Score = 377 bits (969), Expect = e-105
Identities = 187/220 (85%), Positives = 196/220 (89%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLPAGVRDFVERSA LCQPEGIHIC
Sbjct: 4 VYRPGLRLSWPGLSPWGWSSWRSIQTLRVLSGDLGQLPAGVRDFVERSAHLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DG+E+ENTATL LLE+QGLIRKLPKY+NCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGSESENTATLTLLEKQGLIRKLPKYDNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
A GARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 ADGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLG PVL+ALGDG+FVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGMPVLRALGDGNFVKCLHSVGQPLTGQGE 223
>ref|XP_859642.1| PREDICTED: similar to mitochondrial phosphoenolpyruvate
carboxykinase 2 isoform 1 precursor isoform 4 [Canis
familiaris].
Length = 641
Score = 377 bits (969), Expect = e-105
Identities = 187/220 (85%), Positives = 196/220 (89%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLPAGVRDFVERSA LCQPEGIHIC
Sbjct: 4 VYRPGLRLSWPGLSPWGWSSWRSIQTLRVLSGDLGQLPAGVRDFVERSAHLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DG+E+ENTATL LLE+QGLIRKLPKY+NCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGSESENTATLTLLEKQGLIRKLPKYDNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
A GARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 ADGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLG PVL+ALGDG+FVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGMPVLRALGDGNFVKCLHSVGQPLTGQGE 223
>ref|XP_859612.1| PREDICTED: similar to mitochondrial phosphoenolpyruvate
carboxykinase 2 isoform 1 precursor isoform 3 [Canis
familiaris].
Length = 641
Score = 377 bits (969), Expect = e-105
Identities = 187/220 (85%), Positives = 196/220 (89%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLPAGVRDFVERSA LCQPEGIHIC
Sbjct: 4 VYRPGLRLSWPGLSPWGWSSWRSIQTLRVLSGDLGQLPAGVRDFVERSAHLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DG+E+ENTATL LLE+QGLIRKLPKY+NCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGSESENTATLTLLEKQGLIRKLPKYDNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
A GARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 ADGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLG PVL+ALGDG+FVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGMPVLRALGDGNFVKCLHSVGQPLTGQGE 223
>ref|XP_859577.1| PREDICTED: similar to mitochondrial phosphoenolpyruvate
carboxykinase 2 isoform 1 precursor isoform 2 [Canis
familiaris].
Length = 645
Score = 377 bits (969), Expect = e-105
Identities = 187/220 (85%), Positives = 196/220 (89%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLPAGVRDFVERSA LCQPEGIHIC
Sbjct: 4 VYRPGLRLSWPGLSPWGWSSWRSIQTLRVLSGDLGQLPAGVRDFVERSAHLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DG+E+ENTATL LLE+QGLIRKLPKY+NCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGSESENTATLTLLEKQGLIRKLPKYDNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
A GARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 ADGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLG PVL+ALGDG+FVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGMPVLRALGDGNFVKCLHSVGQPLTGQGQ 223
>ref|XP_537379.2| PREDICTED: similar to mitochondrial phosphoenolpyruvate
carboxykinase 2 isoform 1 precursor isoform 1 [Canis
familiaris].
Length = 640
Score = 377 bits (969), Expect = e-105
Identities = 187/220 (85%), Positives = 196/220 (89%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLPAGVRDFVERSA LCQPEGIHIC
Sbjct: 4 VYRPGLRLSWPGLSPWGWSSWRSIQTLRVLSGDLGQLPAGVRDFVERSAHLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DG+E+ENTATL LLE+QGLIRKLPKY+NCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGSESENTATLTLLEKQGLIRKLPKYDNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
A GARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 ADGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLG PVL+ALGDG+FVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGMPVLRALGDGNFVKCLHSVGQPLTGQGE 223
>ref|XP_859735.1| PREDICTED: similar to mitochondrial phosphoenolpyruvate
carboxykinase 2 isoform 1 precursor isoform 7 [Canis
familiaris].
Length = 640
Score = 377 bits (968), Expect = e-104
Identities = 191/232 (82%), Positives = 199/232 (85%), Gaps = 3/232 (1%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLPAGVRDFVERSA LCQPEGIHIC
Sbjct: 4 VYRPGLRLSWPGLSPWGWSSWRSIQTLRVLSGDLGQLPAGVRDFVERSAHLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DG+E+ENTATL LLE+QGLIRKLPKY+NCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGSESENTATLTLLEKQGLIRKLPKYDNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
A GARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 ADGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK---HLLCPGEDT 793
VVASMRIMTRLG PVL+ALGDG+FVKCLHSVGQPLTGQ K H C E T
Sbjct: 184 VVASMRIMTRLGMPVLRALGDGNFVKCLHSVGQPLTGQEKSIVHWPCNPEKT 235
>ref|NP_001184072.1| phosphoenolpyruvate carboxykinase, cytosolic [Canis lupus
familiaris].
Length = 622
Score = 267 bits (683), Expect = 1e-71
Identities = 128/188 (68%), Positives = 152/188 (80%)
Frame = +2
Query: 188 RVLNGDLGQLPAGVRDFVERSARLCQPEGIHICDGTEAENTATLALLEQQGLIRKLPKYN 367
+V+ G L LP VR FVE S +LCQPE IHICDG+E EN L +E QG+I++L K N
Sbjct: 14 KVIQGTLDSLPQAVRTFVENSVKLCQPEHIHICDGSEEENQQLLEHMEGQGMIKRLRKLN 73
Query: 368 NCWLARTDPKDVARVESKTVIVTPSQRDTVPLPAGGARGQLGNWMSPAEFQQAVDERFPG 547
NCWLA TDPKDVAR+ESKTVI+T QRDTVP+P G QLG WMS +F++A + RFPG
Sbjct: 74 NCWLALTDPKDVARIESKTVIITQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPG 132
Query: 548 CMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLGKPVLQALGDGDFVKC 727
CM+GRTMYV+PFSMGP+GSPLS+IG++LTDS YVVASMRIMTR+G VL+ALGDG+FVKC
Sbjct: 133 CMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFVKC 192
Query: 728 LHSVGQPL 751
LHSVG PL
Sbjct: 193 LHSVGCPL 200
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,152,379
Number of extensions: 1468356
Number of successful extensions: 5912
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5894
Number of HSP's successfully gapped: 9
Length of query: 378
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 274
Effective length of database: 15,407,560
Effective search space: 4221671440
Effective search space used: 4221671440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004515
(1135 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001018083.1| phosphoenolpyruvate carboxykinase [GTP], mit... 380 e-105
Alignment gi|NP_004554.2| phosphoenolpyruvate carboxykinase [GTP], mitoch... 380 e-105
Alignment gi|NP_002582.3| phosphoenolpyruvate carboxykinase, cytosolic [G... 270 2e-72
>ref|NP_001018083.1| phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform 2
precursor [Homo sapiens].
Length = 441
Score = 380 bits (977), Expect = e-105
Identities = 188/220 (85%), Positives = 194/220 (88%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLP G+RDFVE SARLCQPEGIHIC
Sbjct: 4 LYRPGLRLNWHGLSPLGWPSCRSIQTLRVLSGDLGQLPTGIRDFVEHSARLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DGTEAENTATL LLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTV LP
Sbjct: 64 DGTEAENTATLTLLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVQLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
GGARGQLGNWMSPA+FQ+AVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 PGGARGQLGNWMSPADFQRAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLG PVLQALGDGDFVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGE 223
>ref|NP_004554.2| phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform 1
precursor [Homo sapiens].
Length = 640
Score = 380 bits (977), Expect = e-105
Identities = 188/220 (85%), Positives = 194/220 (88%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
+YRP IQ LRVL+GDLGQLP G+RDFVE SARLCQPEGIHIC
Sbjct: 4 LYRPGLRLNWHGLSPLGWPSCRSIQTLRVLSGDLGQLPTGIRDFVEHSARLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DGTEAENTATL LLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTV LP
Sbjct: 64 DGTEAENTATLTLLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVQLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
GGARGQLGNWMSPA+FQ+AVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 PGGARGQLGNWMSPADFQRAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLG PVLQALGDGDFVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGE 223
>ref|NP_002582.3| phosphoenolpyruvate carboxykinase, cytosolic [GTP] [Homo sapiens].
Length = 622
Score = 270 bits (689), Expect = 2e-72
Identities = 125/188 (66%), Positives = 156/188 (82%)
Frame = +2
Query: 188 RVLNGDLGQLPAGVRDFVERSARLCQPEGIHICDGTEAENTATLALLEQQGLIRKLPKYN 367
+V+ G L LP VR+F+E +A LCQP+ IHICDG+E EN L +E++G++R+L KY+
Sbjct: 14 KVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYD 73
Query: 368 NCWLARTDPKDVARVESKTVIVTPSQRDTVPLPAGGARGQLGNWMSPAEFQQAVDERFPG 547
NCWLA TDP+DVAR+ESKTVIVT QRDTVP+P G QLG WMS +F++A + RFPG
Sbjct: 74 NCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPG 132
Query: 548 CMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLGKPVLQALGDGDFVKC 727
CM+GRTMYV+PFSMGP+GSPLS+IG++LTDS YVVASMRIMTR+G PVL+A+GDG+FVKC
Sbjct: 133 CMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKC 192
Query: 728 LHSVGQPL 751
LHSVG PL
Sbjct: 193 LHSVGCPL 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,343,210
Number of extensions: 1426898
Number of successful extensions: 5716
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5697
Number of HSP's successfully gapped: 3
Length of query: 378
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,868,908
Effective search space: 4074080792
Effective search space used: 4074080792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004515
(1135 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083270.1| phosphoenolpyruvate carboxykinase [GTP], mitoch... 365 e-101
Alignment gi|NP_035174.1| phosphoenolpyruvate carboxykinase, cytosolic [G... 264 8e-71
>ref|NP_083270.1| phosphoenolpyruvate carboxykinase [GTP], mitochondrial [Mus
musculus].
Length = 667
Score = 365 bits (937), Expect = e-101
Identities = 179/196 (91%), Positives = 184/196 (93%)
Frame = +2
Query: 176 IQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHICDGTEAENTATLALLEQQGLIRKL 355
IQ L VL+GD+ QLPAGVRDFV RSA LCQPEGIHICDGTEAENTA LALLE+QGLIRKL
Sbjct: 54 IQTLHVLSGDMSQLPAGVRDFVARSAHLCQPEGIHICDGTEAENTAILALLEEQGLIRKL 113
Query: 356 PKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLPAGGARGQLGNWMSPAEFQQAVDE 535
PKY NCWLARTDPKDVARVESKTVIVTPSQRDTVPL AGGARGQLGNWMSP EFQ+AVDE
Sbjct: 114 PKYKNCWLARTDPKDVARVESKTVIVTPSQRDTVPLLAGGARGQLGNWMSPDEFQRAVDE 173
Query: 536 RFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLGKPVLQALGDGD 715
RFPGCMQGR MYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLG PVLQALGDGD
Sbjct: 174 RFPGCMQGRIMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLGTPVLQALGDGD 233
Query: 716 FVKCLHSVGQPLTGQG 763
F+KCLHSVGQPLTG G
Sbjct: 234 FIKCLHSVGQPLTGHG 249
>ref|NP_035174.1| phosphoenolpyruvate carboxykinase, cytosolic [GTP] [Mus musculus].
Length = 622
Score = 264 bits (675), Expect = 8e-71
Identities = 125/188 (66%), Positives = 155/188 (82%)
Frame = +2
Query: 188 RVLNGDLGQLPAGVRDFVERSARLCQPEGIHICDGTEAENTATLALLEQQGLIRKLPKYN 367
+V+ G L LP VR FVE +A+LCQPE IHICDG+E E LA ++++G+IRKL KY+
Sbjct: 14 KVIQGSLDSLPQAVRKFVEGNAQLCQPEYIHICDGSEEEYGQLLAHMQEEGVIRKLKKYD 73
Query: 368 NCWLARTDPKDVARVESKTVIVTPSQRDTVPLPAGGARGQLGNWMSPAEFQQAVDERFPG 547
NCWLA TDP+DVAR+ESKTVI+T QRDTVP+P G QLG WMS +F++A + RFPG
Sbjct: 74 NCWLALTDPRDVARIESKTVIITQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPG 132
Query: 548 CMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLGKPVLQALGDGDFVKC 727
CM+GRTMYV+PFSMGP+GSPL++IG++LTDS YVVASMRIMTR+G VL+ALGDG+F+KC
Sbjct: 133 CMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGISVLEALGDGEFIKC 192
Query: 728 LHSVGQPL 751
LHSVG PL
Sbjct: 193 LHSVGCPL 200
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,558,172
Number of extensions: 1188517
Number of successful extensions: 4509
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4499
Number of HSP's successfully gapped: 2
Length of query: 378
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 275
Effective length of database: 12,523,851
Effective search space: 3444059025
Effective search space used: 3444059025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004515
(1135 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155225.1| phosphoenolpyruvate carboxykinase [GTP], mit... 400 e-112
Alignment gi|NP_001116630.1| phosphoenolpyruvate carboxykinase, cytosolic... 264 6e-71
>ref|NP_001155225.1| phosphoenolpyruvate carboxykinase [GTP], mitochondrial [Sus
scrofa].
Length = 640
Score = 400 bits (1029), Expect = e-112
Identities = 200/220 (90%), Positives = 201/220 (91%)
Frame = +2
Query: 107 MYRPXXXXXXXXXXXXXXXXXXXIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 286
MYRP IQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC
Sbjct: 4 MYRPGLRLSWHGLSSWGWSSRRSIQALRVLNGDLGQLPAGVRDFVERSARLCQPEGIHIC 63
Query: 287 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 466
DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP
Sbjct: 64 DGTEAENTATLALLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTVPLP 123
Query: 467 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 646
AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY
Sbjct: 124 AGGARGQLGNWMSPAEFQQAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAY 183
Query: 647 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGK 766
VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQG+
Sbjct: 184 VVASMRIMTRLGKPVLQALGDGDFVKCLHSVGQPLTGQGE 223
>ref|NP_001116630.1| phosphoenolpyruvate carboxykinase, cytosolic [Sus scrofa].
Length = 622
Score = 264 bits (675), Expect = 6e-71
Identities = 124/188 (65%), Positives = 154/188 (81%)
Frame = +2
Query: 188 RVLNGDLGQLPAGVRDFVERSARLCQPEGIHICDGTEAENTATLALLEQQGLIRKLPKYN 367
+V+ G L LP VRDFVE SA+LCQP+ IHICDG+E EN L+ +E++G+I++L KY+
Sbjct: 14 KVVRGTLDSLPQAVRDFVESSAKLCQPDQIHICDGSEEENQQLLSHMEEEGVIKRLKKYD 73
Query: 368 NCWLARTDPKDVARVESKTVIVTPSQRDTVPLPAGGARGQLGNWMSPAEFQQAVDERFPG 547
NCWLA TDP+DVAR+ESKTVI+T QRD VP+P G QLG WMSP +F++A + RFPG
Sbjct: 74 NCWLALTDPRDVARIESKTVIITQEQRDAVPIPRSGL-SQLGRWMSPEDFEKAFNARFPG 132
Query: 548 CMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLGKPVLQALGDGDFVKC 727
CM+GRTMYV+PFSMGP+GSPLS+IG++LTDS YVVASMRIMTR+G VL ALG G+F+K
Sbjct: 133 CMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGSAVLDALGAGEFIKG 192
Query: 728 LHSVGQPL 751
LHSVG PL
Sbjct: 193 LHSVGCPL 200
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,966,229
Number of extensions: 1354511
Number of successful extensions: 3838
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3820
Number of HSP's successfully gapped: 2
Length of query: 378
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 277
Effective length of database: 8,829,335
Effective search space: 2445725795
Effective search space used: 2445725795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004515
(1135 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 702 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 702 bits (354), Expect = 0.0
Identities = 374/378 (98%), Gaps = 2/378 (0%)
Strand = Plus / Minus
Query: 557 ggccgaaccatgtatgtgcttccattcagcatgggtcctgtgggctccccactatcccgc 616
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 80465304 ggccgaaccatgtatgtgcttccattcagcatgggtcctgtgggctccccactgtcccgc 80465245
Query: 617 atcggagtgcagctcacggactcagcctatgtggtggctagtatgcggattatgacccga 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80465244 atcggagtgcagctcacggactcagcctatgtggtggctagtatgcggattatgacccga 80465185
Query: 677 ctggggaaacctgtgcttcaggccctgggagatggcgacttcgtcaagtgtctacactcc 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80465184 ctggggaaacctgtgcttcaggccctgggagatggcgacttcgtcaagtgtctacactcc 80465125
Query: 737 gtgggccaacctctgactgggcaaggtaagcacttgctctgcccaggggaagacacaggc 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80465124 gtgggccaacctctgactgggcaaggtaagcacttgctctgcccaggggaagacacaggc 80465065
Query: 797 ctgtgtgccctcagaggggacccctaatcctacccatattattggtgagacacctaatcc 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80465064 ctgtgtgccctcagaggggacccctaatcctacccatattattggtgagacacctaatcc 80465005
Query: 857 cccagatctagggcagcagcctgggctgggggtgaggctgcgttggcagagcagctttat 916
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 80465004 ccaagatctagggcagcagcctgggctgggggtgaggctgcgttggcagagcagc-ttat 80464946
Query: 917 gc-agattgagaagaact 933
|| |||||||||||||||
Sbjct: 80464945 gcaagattgagaagaact 80464928
Score = 482 bits (243), Expect = e-133
Identities = 246/247 (99%)
Strand = Plus / Minus
Query: 126 ggcttagctggcatgggctgagctcctggggctggtcatcacggcgcagcatccaggccc 185
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 80466567 ggcttagctggcatgggctgagctcctggggatggtcatcacggcgcagcatccaggccc 80466508
Query: 186 tgcgagtactcaatggagatctgggccagctgcctgctggggttcgagactttgtggagc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80466507 tgcgagtactcaatggagatctgggccagctgcctgctggggttcgagactttgtggagc 80466448
Query: 246 gcagcgcccgcctctgccaaccagagggcatccacatctgtgatgggactgaggcagaga 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80466447 gcagcgcccgcctctgccaaccagagggcatccacatctgtgatgggactgaggcagaga 80466388
Query: 306 acactgccaccctggctctgctggaacagcagggcctcatccgaaagctccccaagtaca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80466387 acactgccaccctggctctgctggaacagcagggcctcatccgaaagctccccaagtaca 80466328
Query: 366 acaactg 372
|||||||
Sbjct: 80466327 acaactg 80466321
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 372 gctggctggcccgcacagaccccaaggatgtggcacgagtagaaagcaagacggtgattg 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80465575 gctggctggcccgcacagaccccaaggatgtggcacgagtagaaagcaagacggtgattg 80465516
Query: 432 taactccttctcaacgggacacggtgcccctcccagctggtggggcccgtgggcagctgg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80465515 taactccttctcaacgggacacggtgcccctcccagctggtggggcccgtgggcagctgg 80465456
Query: 492 gcaactggatgtccccagctgagttccagcaagctgtggatgagaggtttccaggctgca 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80465455 gcaactggatgtccccagctgagttccagcaagctgtggatgagaggtttccaggctgca 80465396
Query: 552 tgcaggg 558
|||||||
Sbjct: 80465395 tgcaggg 80465389
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 2 ctgctcactgcgcccgcgctcgcctccttccccgccttccacatttccccggctcttcgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80468835 ctgctcactgcgcccgcgctcgcctccttccccgccttccacatttccccggctcttcgg 80468776
Query: 62 ttttcgcggccaccccgcagccgtcgcccaggtgccatggccgctatgtaccgccccggc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80468775 ttttcgcggccaccccgcagccgtcgcccaggtgccatggccgctatgtaccgccccggc 80468716
Query: 122 ctgcgg 127
||||||
Sbjct: 80468715 ctgcgg 80468710
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,489,861
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 4
Length of query: 1135
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1114
Effective length of database: 2,808,413,156
Effective search space: 3128572255784
Effective search space used: 3128572255784
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)