Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004524
(1284 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777170.1| 72 kDa type IV collagenase precursor [Bos tauru... 783 0.0
Alignment gi|NP_777169.1| matrix metalloproteinase-9 precursor [Bos tauru... 437 e-122
Alignment gi|NP_001193569.1| macrophage metalloelastase [Bos taurus]. 216 3e-56
Alignment gi|NP_776814.1| collagenase 3 precursor [Bos taurus]. 213 2e-55
Alignment gi|NP_001193566.1| stromelysin-1 [Bos taurus]. 188 1e-47
Alignment gi|NP_776816.1| matrix metalloproteinase-20 precursor [Bos taur... 187 1e-47
Alignment gi|NP_001068598.1| matrilysin [Bos taurus]. 186 3e-47
Alignment gi|XP_002692980.1| PREDICTED: matrix metalloproteinase 8 prepro... 186 4e-47
Alignment gi|NP_776537.1| interstitial collagenase precursor [Bos taurus]. 180 2e-45
Alignment gi|NP_001092477.1| matrix metalloproteinase-27 [Bos taurus]. 159 4e-39
>ref|NP_777170.1| 72 kDa type IV collagenase precursor [Bos taurus].
Length = 661
Score = 783 bits (2021), Expect = 0.0
Identities = 359/391 (91%), Positives = 364/391 (93%)
Frame = +2
Query: 110 MTEARXXXXXXXXXXXXXCVLGCLXXXXXXXXSPIIKFPGDVAPKTDKELAVQYLNTFYG 289
MTEAR C LGCL SPIIKFPGDVAPKTDKELAVQYLNTFYG
Sbjct: 1 MTEARVSRGALAALLRALCALGCLLGRAAAAPSPIIKFPGDVAPKTDKELAVQYLNTFYG 60
Query: 290 CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW 469
CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW
Sbjct: 61 CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW 120
Query: 470 DKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHG 649
DK QITYRIIGYTPDLDP+TVDDAFARAF+VWSDVTPLRFSRIHDGEADIMINFGRWEHG
Sbjct: 121 DKNQITYRIIGYTPDLDPQTVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHG 180
Query: 650 DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSF 829
DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDEL TLGEGQVVRVKYGNADGEYCKFPF F
Sbjct: 181 DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELRTLGEGQVVRVKYGNADGEYCKFPFRF 240
Query: 830 NGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG 1009
NGKEY SCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG
Sbjct: 241 NGKEYTSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG 300
Query: 1010 TSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK 1189
TSY+SCTTEGRTDGYRWCGTTEDYDRDK+YGFCPETAMSTVGGNSEGAPCV PFTFLGNK
Sbjct: 301 TSYDSCTTEGRTDGYRWCGTTEDYDRDKEYGFCPETAMSTVGGNSEGAPCVLPFTFLGNK 360
Query: 1190 HESCTSAGRSDGKLWCATTANYDDDRKWGFC 1282
HESCTSAGRSDGKLWCATT+NYDDDRKWGFC
Sbjct: 361 HESCTSAGRSDGKLWCATTSNYDDDRKWGFC 391
Score = 159 bits (403), Expect = 4e-39
Identities = 66/133 (49%), Positives = 89/133 (66%)
Frame = +2
Query: 728 HFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNF 907
+FD D + + + GNADG+ CKFPF F G Y+SCT GR+DG+ WC TT ++
Sbjct: 265 NFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDY 324
Query: 908 DKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDR 1087
D+D +YGFCP A+ T+GGN++G PC PF F G + SCT+ GR+DG WC TT +YD
Sbjct: 325 DRDKEYGFCPETAMSTVGGNSEGAPCVLPFTFLGNKHESCTSAGRSDGKLWCATTSNYDD 384
Query: 1088 DKKYGFCPETAMS 1126
D+K+GFCP+ S
Sbjct: 385 DRKWGFCPDQGYS 397
Score = 74.3 bits (181), Expect = 2e-13
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +2
Query: 716 GGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCST 895
G +D D+ + + GN++G C PF+F G ++ SCT GRSDG LWC+T
Sbjct: 319 GTTEDYDRDKEYGFCPETAMSTVGGNSEGAPCVLPFTFLGNKHESCTSAGRSDGKLWCAT 378
Query: 896 TYNFDKDGKYGFCPHE--ALFTMGGNADG 976
T N+D D K+GFCP + +LF + + G
Sbjct: 379 TSNYDDDRKWGFCPDQGYSLFLVAAHEFG 407
>ref|NP_777169.1| matrix metalloproteinase-9 precursor [Bos taurus].
Length = 712
Score = 437 bits (1123), Expect = e-122
Identities = 202/376 (53%), Positives = 262/376 (69%), Gaps = 4/376 (1%)
Frame = +2
Query: 167 VLGCLXXXXXXXXSPIIKFPGDVAPK-TDKELAVQYLNTFYGCP--KESCNLFVLKDTLK 337
VL C ++ FPG+ T+++LA +YL + P + S + L+ L
Sbjct: 13 VLACCSAVPRRRQPTVVVFPGEPRTNLTNRQLAEEYLYRYGYTPGAELSEDGQSLQRALL 72
Query: 338 KMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDL 517
+ Q+ LP+TGELD +T+ MR PRCG PDV + F + KW ITY I Y+ DL
Sbjct: 73 RFQRRLSLPETGELDSTTLNAMRAPRCGVPDVGRFQTFEGELKWHHHNITYWIQNYSEDL 132
Query: 518 DPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 697
+DDAFARAF +WS VTPL F+R++ EADI+I FG EHGDGYPFDGK+GLLAHAF
Sbjct: 133 PRAVIDDAFARAFALWSAVTPLTFTRVYGPEADIVIQFGVREHGDGYPFDGKNGLLAHAF 192
Query: 698 APGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDG 877
PG G+ GD+HFDD+ELW+LG+G V+ +GNA G C FPF+F G+ Y++CT GRSD
Sbjct: 193 PPGKGIQGDAHFDDEELWSLGKGVVIPTYFGNAKGAACHFPFTFEGRSYSACTTDGRSDD 252
Query: 878 FLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYR 1057
LWCSTT ++D D ++GFCP E L+T GNADG+PC FPF FQG +Y++CT++GR+DGYR
Sbjct: 253 MLWCSTTADYDADRQFGFCPSERLYTQDGNADGKPCVFPFTFQGRTYSACTSDGRSDGYR 312
Query: 1058 WCGTTEDYDRDKKYGFCPETAMSTV-GGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLW 1234
WC TT +YD+DK YGFCP +TV GGN+ G CVFPFTFLG ++ +CT GR+DG LW
Sbjct: 313 WCATTANYDQDKLYGFCPTRVDATVTGGNAAGELCVFPFTFLGKEYSACTREGRNDGHLW 372
Query: 1235 CATTANYDDDRKWGFC 1282
CATT+N+D D+KWGFC
Sbjct: 373 CATTSNFDKDKKWGFC 388
Score = 88.6 bits (218), Expect = 1e-17
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Frame = +2
Query: 725 SHFDDDELWTLGEGQV-VRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTY 901
+++D D+L+ +V V GNA GE C FPF+F GKEY++CT GR+DG LWC+TT
Sbjct: 318 ANYDQDKLYGFCPTRVDATVTGGNAAGELCVFPFTFLGKEYSACTREGRNDGHLWCATTS 377
Query: 902 NFDKDGKYGFCPHE--ALFTMGGNADG 976
NFDKD K+GFCP + +LF + + G
Sbjct: 378 NFDKDKKWGFCPDQGYSLFLVAAHEFG 404
>ref|NP_001193569.1| macrophage metalloelastase [Bos taurus].
Length = 471
Score = 216 bits (551), Expect = 3e-56
Identities = 104/192 (54%), Positives = 131/192 (68%), Gaps = 7/192 (3%)
Frame = +2
Query: 206 SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESC-------NLFVLKDTLKKMQKFFGLP 364
+P+ +P + D A +YL FYG E+ N V++D +++MQ+FFGL
Sbjct: 18 APLTDYPSP--EENDVAFAQRYLANFYGLEMETTPMTKMKVNRNVMEDKIQEMQQFFGLK 75
Query: 365 QTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAF 544
TG+LD ST++ M +PRCG PDV N+ FP +P W K ITYRI YTPDL PE VDDAF
Sbjct: 76 VTGQLDTSTLDMMHRPRCGVPDVKNFQVFPGRPAWKKRLITYRINNYTPDLKPEDVDDAF 135
Query: 545 ARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGD 724
+AF+VWSDVTPL+F ++HD EADIMI F EHGD Y FDG G+LAHAFAPG G+GGD
Sbjct: 136 QKAFQVWSDVTPLKFRKVHDNEADIMIRFAFREHGDAYSFDGPWGILAHAFAPGAGLGGD 195
Query: 725 SHFDDDELWTLG 760
+HFD+ E WT G
Sbjct: 196 AHFDEAETWTKG 207
>ref|NP_776814.1| collagenase 3 precursor [Bos taurus].
Length = 471
Score = 213 bits (543), Expect = 2e-55
Identities = 102/175 (58%), Positives = 123/175 (70%), Gaps = 6/175 (3%)
Frame = +2
Query: 248 DKELAVQYLNTFY------GCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 409
D + A YL ++Y G K++ V+ D L++MQ FFGL TG LD +T++ M+K
Sbjct: 35 DFQFAESYLKSYYYPQNPAGILKKTAASSVI-DRLREMQSFFGLEVTGRLDDNTLDIMKK 93
Query: 410 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 589
PRCG PDV YN FPR KW K +TYRI+ YTPDL V+ AF +AF+VWSDVTPL F
Sbjct: 94 PRCGVPDVGEYNVFPRTLKWSKMNLTYRIVNYTPDLTHSEVEKAFRKAFKVWSDVTPLNF 153
Query: 590 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
+RIH+G ADIMI+FG EHGD YPFDG GLLAHAF PGP GGD+HFDDDE WT
Sbjct: 154 TRIHNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT 208
>ref|NP_001193566.1| stromelysin-1 [Bos taurus].
Length = 477
Score = 188 bits (477), Expect = 1e-47
Identities = 91/173 (52%), Positives = 113/173 (65%), Gaps = 6/173 (3%)
Frame = +2
Query: 254 ELAVQYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMRKPR 415
EL QYL +Y K++ KD+ +++MQKF GL TG+LD T+E +RKPR
Sbjct: 32 ELVQQYLENYYNLAKDTKQFVRRKDSSPVVQKIQEMQKFLGLEVTGKLDSDTLEVIRKPR 91
Query: 416 CGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSR 595
CG PDV ++ FP PKW KT +TYRI+ YT DL + VD A +A VW + TPL FSR
Sbjct: 92 CGIPDVGFFSTFPGSPKWRKTHLTYRIVNYTKDLPRDAVDSAIEKALTVWEEATPLTFSR 151
Query: 596 IHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
I++GEADIMI F EHGD PFDG +LAHA+ PG G GD+HFDDDE WT
Sbjct: 152 IYEGEADIMIIFAIREHGDFLPFDGPGKVLAHAYPPGSGFYGDAHFDDDEQWT 204
>ref|NP_776816.1| matrix metalloproteinase-20 precursor [Bos taurus].
Length = 481
Score = 187 bits (476), Expect = 1e-47
Identities = 95/187 (50%), Positives = 123/187 (65%), Gaps = 12/187 (6%)
Frame = +2
Query: 236 APKTDKE---LAVQYLNTFY---GCPK------ESCNLFVLKDTLKKMQKFFGLPQTGEL 379
+P+T + LA YL+ +Y G P+ N V K +K++Q+FFGL TG+L
Sbjct: 28 SPRTSRNNYRLAQAYLDKYYTKKGGPQIGEMVARGGNSTVKK--IKELQEFFGLRVTGKL 85
Query: 380 DQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFR 559
D++T++ +++PRCG PDVANY FP +PKW K +TYRI YTP + P VD A A R
Sbjct: 86 DRATMDVIKRPRCGVPDVANYRLFPGEPKWKKNTLTYRISKYTPSMTPAEVDRAMEMALR 145
Query: 560 VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDD 739
WS PL F RI+ GEADIMI+F +HGD YPFDG G LAHAFAPG G+GGD+HFD+
Sbjct: 146 AWSSAVPLNFVRINAGEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDN 205
Query: 740 DELWTLG 760
E WT+G
Sbjct: 206 AEKWTMG 212
>ref|NP_001068598.1| matrilysin [Bos taurus].
Length = 267
Score = 186 bits (473), Expect = 3e-47
Identities = 93/178 (52%), Positives = 111/178 (62%)
Frame = +2
Query: 254 ELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDV 433
+LA YL FY + N L+ LK+M+ FF LP TG L IE M KPR G PDV
Sbjct: 33 QLAQDYLKRFYSSDSKIKNANSLEVRLKRMEGFFHLPITGILSPRIIEIMEKPRSGVPDV 92
Query: 434 ANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEA 613
A ++ FP PKW +TYRI+ YT DL TV+ A+AF++WS+ PL F R+ G A
Sbjct: 93 AEFSLFPNHPKWTSKVVTYRIMSYTSDLPHITVNQLVAKAFKIWSEAIPLTFKRLRWGTA 152
Query: 614 DIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKY 787
DIMI F R HGD YPFDG LAHAFAPGPG+GGD+HFD+DE WT G G V Y
Sbjct: 153 DIMIGFARRAHGDPYPFDGPGATLAHAFAPGPGLGGDAHFDEDERWTDGIGIGVNFLY 210
>ref|XP_002692980.1| PREDICTED: matrix metalloproteinase 8 preproprotein-like [Bos
taurus].
Length = 494
Score = 186 bits (472), Expect = 4e-47
Identities = 87/175 (49%), Positives = 116/175 (66%), Gaps = 6/175 (3%)
Frame = +2
Query: 248 DKELAVQYLNTFYGCPK------ESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 409
++ + YL FY P+ V+ +TLK+MQ+FFGL TG+ ++ T+E MRK
Sbjct: 32 NRNIVQNYLEKFYQLPRFKYKSERKSKTNVIVETLKRMQQFFGLNVTGKPNEETLEMMRK 91
Query: 410 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 589
PRCG PD ++ P PKW+KT++TYRI+ YTP+L V+ AF+VWS V+PL F
Sbjct: 92 PRCGVPDSGSFMRTPGNPKWEKTKLTYRIVNYTPNLTEMDVEAIIEEAFKVWSKVSPLTF 151
Query: 590 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
+R D EADI I+F + +HGD PFDG DG+LAHAF PGPG+GGD HFD +E WT
Sbjct: 152 NRTLDEEADIQISFAQRDHGDNSPFDGPDGILAHAFQPGPGIGGDVHFDAEETWT 206
>ref|NP_776537.1| interstitial collagenase precursor [Bos taurus].
Length = 469
Score = 180 bits (457), Expect = 2e-45
Identities = 87/175 (49%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Frame = +2
Query: 248 DKELAVQYLNTFYGCP------KESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 409
D E +YL +Y + N ++ + LK+MQKFFGL TG+ D T+ M++
Sbjct: 30 DVETVKKYLENYYNLNSNGKKVERQRNGGLITEKLKQMQKFFGLRVTGKPDAETLNVMKQ 89
Query: 410 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 589
PRCG PDVA + P K W+ T +TYRI YTPDL VD A +AF++WS+VTPL F
Sbjct: 90 PRCGVPDVAPFVLTPGKSCWENTNLTYRIENYTPDLSRADVDQAIEKAFQLWSNVTPLTF 149
Query: 590 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
+++ +G+ADIMI+F R +H D PFDG G LAHAF PG G+GGD+HFDDDE WT
Sbjct: 150 TKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGAGIGGDAHFDDDEWWT 204
>ref|NP_001092477.1| matrix metalloproteinase-27 [Bos taurus].
Length = 510
Score = 159 bits (403), Expect = 4e-39
Identities = 87/187 (46%), Positives = 111/187 (59%), Gaps = 9/187 (4%)
Frame = +2
Query: 221 FPGDVAPKTDKELAVQ--YLNTFYGCPKE------SCNLFVLKDTLKKMQKFFGLPQTGE 376
FP D + ++ L + YLN FY E S N ++ +++MQ FFGL TG+
Sbjct: 17 FPADQRMEDEENLQLTQAYLNQFYSLEIEGSHLAQSSNRSLIDGKIREMQAFFGLTVTGK 76
Query: 377 LDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAF 556
LD +T+E M+ PRCG PDV Y F P W K +TYRI+ YTPD+ VD+A +
Sbjct: 77 LDSNTLEIMKTPRCGVPDVGQYGF--TLPGWKKHNLTYRIVNYTPDMARADVDEAIQKGL 134
Query: 557 RVWSDVTPLRFSRIHDGEADIMINFGRWEHGD-GYPFDGKDGLLAHAFAPGPGVGGDSHF 733
VWS VTPL F++I G ADIMI F HG FDG G+L HAF PG G+GGD+HF
Sbjct: 135 EVWSKVTPLIFTKISKGIADIMIAFKTRVHGSCPRYFDGPLGVLGHAFPPGLGLGGDTHF 194
Query: 734 DDDELWT 754
D+DE WT
Sbjct: 195 DEDENWT 201
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,195,352
Number of extensions: 1369917
Number of successful extensions: 5349
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 5238
Number of HSP's successfully gapped: 79
Length of query: 428
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 323
Effective length of database: 14,207,134
Effective search space: 4588904282
Effective search space used: 4588904282
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004524
(1284 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535300.2| PREDICTED: similar to matrix metalloproteinase ... 734 0.0
Alignment gi|NP_001003219.1| matrix metalloproteinase-9 precursor [Canis ... 454 e-128
Alignment gi|XP_536598.2| PREDICTED: similar to Collagenase 3 precursor (... 219 6e-57
Alignment gi|NP_001229655.1| matrilysin [Canis lupus familiaris]. 187 2e-47
Alignment gi|NP_001002967.1| stromelysin-1 precursor [Canis lupus familia... 185 9e-47
Alignment gi|XP_546547.2| PREDICTED: similar to Neutrophil collagenase pr... 180 3e-45
Alignment gi|XP_854639.1| PREDICTED: similar to matrix metalloproteinase ... 179 7e-45
Alignment gi|XP_854594.1| PREDICTED: similar to Macrophage metalloelastas... 178 9e-45
Alignment gi|XP_546546.2| PREDICTED: similar to Interstitial collagenase ... 170 3e-42
Alignment gi|XP_546548.2| PREDICTED: similar to matrix metalloproteinase ... 155 6e-38
>ref|XP_535300.2| PREDICTED: similar to matrix metalloproteinase 2 preproprotein [Canis
familiaris].
Length = 612
Score = 734 bits (1894), Expect = 0.0
Identities = 328/339 (96%), Positives = 335/339 (98%)
Frame = +2
Query: 266 QYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYN 445
QYLNT+YGCPKE CNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYN
Sbjct: 4 QYLNTYYGCPKERCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYN 63
Query: 446 FFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMI 625
FFPRKPKWDK QITYRIIGYTPDLDPETVDDAFARAF+VWSDVTPLRFSRIHDGEADIMI
Sbjct: 64 FFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMI 123
Query: 626 NFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGE 805
NFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGE
Sbjct: 124 NFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGE 183
Query: 806 YCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPC 985
YCKFPF FNG+EY SCTDTGRSDGFLWCSTTYNF+KDGKYGFCPHEALFTMGGNADGQPC
Sbjct: 184 YCKFPFLFNGREYTSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNADGQPC 243
Query: 986 KFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVF 1165
KFPFRFQGTSY+SCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMST+GGNSEGAPCVF
Sbjct: 244 KFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTIGGNSEGAPCVF 303
Query: 1166 PFTFLGNKHESCTSAGRSDGKLWCATTANYDDDRKWGFC 1282
PFTFLGNKHESCTSAGRSDGK+WCATTANYDDDRKWGFC
Sbjct: 304 PFTFLGNKHESCTSAGRSDGKVWCATTANYDDDRKWGFC 342
Score = 161 bits (407), Expect = 1e-39
Identities = 65/113 (57%), Positives = 83/113 (73%)
Frame = +2
Query: 788 GNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGN 967
GNADG+ CKFPF F G Y+SCT GR+DG+ WC TT ++D+D KYGFCP A+ T+GGN
Sbjct: 236 GNADGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTIGGN 295
Query: 968 ADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMS 1126
++G PC FPF F G + SCT+ GR+DG WC TT +YD D+K+GFCP+ S
Sbjct: 296 SEGAPCVFPFTFLGNKHESCTSAGRSDGKVWCATTANYDDDRKWGFCPDQGYS 348
Score = 75.5 bits (184), Expect = 1e-13
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Frame = +2
Query: 716 GGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCST 895
G +D D+ + + GN++G C FPF+F G ++ SCT GRSDG +WC+T
Sbjct: 270 GTTEDYDRDKKYGFCPETAMSTIGGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKVWCAT 329
Query: 896 TYNFDKDGKYGFCPHE--ALFTMGGNADG 976
T N+D D K+GFCP + +LF + + G
Sbjct: 330 TANYDDDRKWGFCPDQGYSLFLVAAHEFG 358
>ref|NP_001003219.1| matrix metalloproteinase-9 precursor [Canis lupus familiaris].
Length = 704
Score = 454 bits (1168), Expect = e-128
Identities = 213/376 (56%), Positives = 264/376 (70%), Gaps = 4/376 (1%)
Frame = +2
Query: 167 VLGCLXXXXXXXXSPIIKFPGDVAPK-TDKELAVQYLNTF-YGCPKE-SCNLFVLKDTLK 337
VLGC ++ FPGD+ TDK+LA +YL + Y E S + L L+
Sbjct: 13 VLGCCSAAPRPHKPTVVVFPGDLRTNLTDKQLAEEYLFRYGYTQVAELSDDKQSLSRGLR 72
Query: 338 KMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDL 517
+Q+ LP+TGELD++T+E MR PRCG PD+ + F KW ITY I Y+ DL
Sbjct: 73 LLQRRLALPETGELDKTTLEAMRAPRCGVPDLGKFQTFEGDLKWHHNDITYWIQNYSEDL 132
Query: 518 DPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 697
+ +DDAFARAF VWS VTPL F+R++ EADI+I FG EHGDGYPFDGK+GLLAHAF
Sbjct: 133 PRDVIDDAFARAFAVWSAVTPLTFTRVYGPEADIIIQFGVREHGDGYPFDGKNGLLAHAF 192
Query: 698 APGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDG 877
PGPG+ GD+HFDD+ELWTLG+G VV +GNADG C FPF+F G+ Y++CT GRSD
Sbjct: 193 PPGPGIQGDAHFDDEELWTLGKGVVVPTHFGNADGAPCHFPFTFEGRSYSACTTDGRSDD 252
Query: 878 FLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYR 1057
WCSTT ++D D ++GFCP E L+T GN DG+PC FPF F+G SY++CTT+GR+DGYR
Sbjct: 253 TPWCSTTADYDTDRRFGFCPSEKLYTQDGNGDGKPCVFPFTFEGRSYSTCTTDGRSDGYR 312
Query: 1058 WCGTTEDYDRDKKYGFCPETAMSTV-GGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLW 1234
WC TT DYD+DK YGFCP S V GGNS G PCVFPF FLG ++ +CT GR DG LW
Sbjct: 313 WCSTTGDYDQDKLYGFCPTRVDSAVTGGNSAGEPCVFPFIFLGKQYSTCTREGRGDGHLW 372
Query: 1235 CATTANYDDDRKWGFC 1282
CATT+N+D D+KWGFC
Sbjct: 373 CATTSNFDRDKKWGFC 388
>ref|XP_536598.2| PREDICTED: similar to Collagenase 3 precursor (Matrix
metalloproteinase-13) (MMP-13) [Canis familiaris].
Length = 470
Score = 219 bits (557), Expect = 6e-57
Identities = 106/181 (58%), Positives = 128/181 (70%), Gaps = 6/181 (3%)
Frame = +2
Query: 230 DVAPKTDKELAVQYLNTFY------GCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQST 391
D + D +LA +YL ++Y G K+S V D L++MQ FFGL TG+LD +T
Sbjct: 28 DDLSEEDFQLAERYLKSYYYPLNPAGILKKSAAGSVA-DRLREMQSFFGLEVTGKLDDNT 86
Query: 392 IETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSD 571
++ M+KPRCG PDV YN FPR KW KT +TYRI+ YTPDL V+ AF +AF+VWSD
Sbjct: 87 LDIMKKPRCGVPDVGEYNVFPRTLKWSKTNLTYRIVNYTPDLTHSEVEKAFKKAFKVWSD 146
Query: 572 VTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELW 751
VTPL F+R+HDG ADIMI+FG EHGD YPFDG GLLAHAF PGP GGD+HFDDDE W
Sbjct: 147 VTPLNFTRLHDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW 206
Query: 752 T 754
T
Sbjct: 207 T 207
>ref|NP_001229655.1| matrilysin [Canis lupus familiaris].
Length = 263
Score = 187 bits (474), Expect = 2e-47
Identities = 91/167 (54%), Positives = 109/167 (65%)
Frame = +2
Query: 260 AVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVAN 439
A YL FY ++ + K LK+MQKFF LP TG L+ TIE M+KPRCG PDVA+
Sbjct: 35 AQDYLKRFYPSDSKTRDADSFKTKLKEMQKFFRLPVTGILNSRTIEIMQKPRCGVPDVAH 94
Query: 440 YNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADI 619
++ FP +PKW ITYRI YTPDL V+ A+A +WS PL F R+ G ADI
Sbjct: 95 FSLFPNRPKWTSEVITYRIASYTPDLPRFRVNQLVAKALAMWSKEIPLSFRRVPRGTADI 154
Query: 620 MINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLG 760
MI F R HGD YPFDG +LAHAFAPGP +GGD+HFD+DE WT G
Sbjct: 155 MIGFARGAHGDYYPFDGPGNILAHAFAPGPDLGGDAHFDEDERWTDG 201
>ref|NP_001002967.1| stromelysin-1 precursor [Canis lupus familiaris].
Length = 478
Score = 185 bits (469), Expect = 9e-47
Identities = 90/187 (48%), Positives = 118/187 (63%), Gaps = 9/187 (4%)
Frame = +2
Query: 221 FPGDVAPKTDK---ELAVQYLNTFYGCPKE------SCNLFVLKDTLKKMQKFFGLPQTG 373
+P D A + + EL QYL +Y K+ N + + +++MQKF GL TG
Sbjct: 18 YPVDRAAEDENNNMELTQQYLENYYNLGKDVKPFVRRRNSGPVVEKIREMQKFLGLEVTG 77
Query: 374 ELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARA 553
++D T+ MR+PRCG PDV ++ FP PKW KT +TYRI+ YTPDL + VD A +A
Sbjct: 78 KVDSDTLAMMRRPRCGVPDVGDFTTFPGMPKWRKTHLTYRIMNYTPDLPRDAVDSAIEKA 137
Query: 554 FRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHF 733
VW +VTPL FSR +GEADI I+F +HGD PFDG +L HA+ PGPG+ GD+HF
Sbjct: 138 LNVWKEVTPLTFSRTDEGEADIKISFAVRDHGDFNPFDGPGNVLGHAYPPGPGIYGDAHF 197
Query: 734 DDDELWT 754
DDDE WT
Sbjct: 198 DDDEQWT 204
>ref|XP_546547.2| PREDICTED: similar to Neutrophil collagenase precursor (Matrix
metalloproteinase-8) (MMP-8) (PMNL collagenase)
(PMNL-CL) [Canis familiaris].
Length = 451
Score = 180 bits (456), Expect = 3e-45
Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 6/171 (3%)
Frame = +2
Query: 260 AVQYLNTFYGCPKESC------NLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCG 421
A YL FY P+ + V+ + L++MQ+FFGL +TG+ +Q T+E M+KPRCG
Sbjct: 19 AQDYLEKFYQLPRNRFQSERKNSTSVIMEKLREMQRFFGLNETGKPNQETLEMMQKPRCG 78
Query: 422 NPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIH 601
PD ++ P PKW +T +TYRII YTP L V+ A +AF+VWS+V+PL F+++
Sbjct: 79 VPDSGDFMLTPGNPKWKQTNLTYRIIKYTPQLSEANVETAIQKAFQVWSNVSPLTFTKVS 138
Query: 602 DGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
GE DI I+F + +HGD PFDG +G+LAHAF PG G+GGD HFD +E WT
Sbjct: 139 QGEVDIRISFVQGDHGDNSPFDGPNGILAHAFQPGQGIGGDVHFDAEETWT 189
>ref|XP_854639.1| PREDICTED: similar to matrix metalloproteinase 20 preproprotein
[Canis familiaris].
Length = 483
Score = 179 bits (453), Expect = 7e-45
Identities = 79/143 (55%), Positives = 101/143 (70%)
Frame = +2
Query: 332 LKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTP 511
+K++Q FFGL TG+LD+ T++ +++PRCG PDVANY FP +PKW K +TYRI YT
Sbjct: 72 IKELQAFFGLRITGKLDRPTMDMIKRPRCGVPDVANYRLFPGEPKWKKNTLTYRISKYTS 131
Query: 512 DLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAH 691
+ P VD A A + W PL F R++ GEADIMI+F +HGD YPFDG G LAH
Sbjct: 132 SMSPAEVDKAVEMALQAWGSAVPLSFIRVNSGEADIMISFETGDHGDSYPFDGPRGTLAH 191
Query: 692 AFAPGPGVGGDSHFDDDELWTLG 760
AFAPG G+GGD+HFD+ E WT+G
Sbjct: 192 AFAPGEGLGGDTHFDNAEKWTMG 214
>ref|XP_854594.1| PREDICTED: similar to Macrophage metalloelastase precursor (HME)
(Matrix metalloproteinase-12) (MMP-12) (Macrophage
elastase) (ME) [Canis familiaris].
Length = 601
Score = 178 bits (452), Expect = 9e-45
Identities = 86/184 (46%), Positives = 121/184 (65%), Gaps = 7/184 (3%)
Frame = +2
Query: 224 PGDVAPKTDKELAVQYLNTFYG-----CPKESCNLF--VLKDTLKKMQKFFGLPQTGELD 382
P + + + ++ A +YL FYG PK + ++++ +++MQ+F GL TG+LD
Sbjct: 153 PLNNSEENNETYARRYLENFYGFVMDGIPKTKMGVGGNLMENKIQEMQQFLGLKVTGKLD 212
Query: 383 QSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRV 562
ST++ M PRCG PDV +++ +P W K ITYRI YTPD+ P VD A +AF V
Sbjct: 213 ASTLDMMHMPRCGLPDVQHFSTMQGRPVWKKHLITYRINNYTPDMQPADVDYAIHKAFEV 272
Query: 563 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDD 742
WS+VTPL+F +++ GEADIMI F HGD PFDG+ G++AHAF PGP +GGD HFD+
Sbjct: 273 WSNVTPLKFRKVNSGEADIMILFASRAHGDFSPFDGRGGVIAHAFGPGPQIGGDMHFDEA 332
Query: 743 ELWT 754
E+WT
Sbjct: 333 EIWT 336
>ref|XP_546546.2| PREDICTED: similar to Interstitial collagenase precursor (Matrix
metalloproteinase-1) (MMP-1) (Fibroblast collagenase)
[Canis familiaris].
Length = 465
Score = 170 bits (430), Expect = 3e-42
Identities = 83/175 (47%), Positives = 112/175 (64%), Gaps = 6/175 (3%)
Frame = +2
Query: 248 DKELAVQYLNTFYGCPKESC------NLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 409
D E+ YL +Y + N ++ + LK+MQ FFGL TG++D T+ M++
Sbjct: 30 DVEMVQNYLEKYYYLKSDGKPVVRQRNNSLVSEKLKQMQAFFGLKVTGKVDTDTLNLMKQ 89
Query: 410 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 589
PRCG PDVA Y +WD T +TYRI YTPDL VD A +AF++WS+V+PL F
Sbjct: 90 PRCGVPDVAQY-VLTDGSQWDHTHLTYRIENYTPDLPRAEVDSAIEKAFQLWSNVSPLTF 148
Query: 590 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
+++ +G+ADIMI+F +H D PFDG +G LAHAF PGP +GGD HFD+DE WT
Sbjct: 149 TKVFEGQADIMISFVWGDHRDNSPFDGPNGNLAHAFQPGPNLGGDIHFDEDETWT 203
>ref|XP_546548.2| PREDICTED: similar to matrix metalloproteinase 27 [Canis
familiaris].
Length = 512
Score = 155 bits (393), Expect = 6e-38
Identities = 89/188 (47%), Positives = 111/188 (59%), Gaps = 10/188 (5%)
Frame = +2
Query: 221 FPGDVAPKTDK--ELAVQYLNTFYGCPKE------SCNLFVLKDTLKKMQKFFGLPQTGE 376
FP + T++ +LA YLN FY E S N +L +++MQ FFGL TG+
Sbjct: 18 FPTEQKMDTEENMQLAQVYLNQFYSLEIEGSHLAQSKNKSLLVGKIREMQAFFGLTVTGQ 77
Query: 377 LDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAF 556
LD +T+E M+ PRCG PDV Y + P W K +TYRI+ YTPD+ VD A
Sbjct: 78 LDSNTLEIMKTPRCGVPDVGQYGY--TLPGWRKYNLTYRIVNYTPDMARVDVDKAIQNGL 135
Query: 557 RVWSDVTPLRFSRIHDGEADIMINFGRWEHG--DGYPFDGKDGLLAHAFAPGPGVGGDSH 730
VWS VTPL F++I G ADIMI F HG Y FDG G+L HAF PG G+GGD+H
Sbjct: 136 EVWSGVTPLTFTKISKGIADIMIAFRTRVHGWCPRY-FDGPLGVLGHAFPPGLGLGGDTH 194
Query: 731 FDDDELWT 754
FD+DE WT
Sbjct: 195 FDEDEDWT 202
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,129,210
Number of extensions: 1371991
Number of successful extensions: 5679
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 5603
Number of HSP's successfully gapped: 59
Length of query: 428
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 322
Effective length of database: 15,340,888
Effective search space: 4939765936
Effective search space used: 4939765936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004524
(1284 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004521.1| 72 kDa type IV collagenase isoform a preproprot... 781 0.0
Alignment gi|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo s... 732 0.0
Alignment gi|NP_004985.2| matrix metalloproteinase-9 preproprotein [Homo ... 464 e-130
Alignment gi|NP_002418.1| collagenase 3 preproprotein [Homo sapiens]. 213 4e-55
Alignment gi|NP_002413.1| stromelysin-1 preproprotein [Homo sapiens]. 204 1e-52
Alignment gi|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens]. 199 5e-51
Alignment gi|NP_002414.1| matrilysin preproprotein [Homo sapiens]. 189 6e-48
Alignment gi|NP_002417.2| macrophage metalloelastase preproprotein [Homo ... 185 7e-47
Alignment gi|NP_004762.2| matrix metalloproteinase-20 preproprotein [Homo... 184 1e-46
Alignment gi|NP_002412.1| interstitial collagenase isoform 1 preproprotei... 181 1e-45
>ref|NP_004521.1| 72 kDa type IV collagenase isoform a preproprotein [Homo sapiens].
Length = 660
Score = 781 bits (2016), Expect = 0.0
Identities = 353/373 (94%), Positives = 362/373 (97%)
Frame = +2
Query: 164 CVLGCLXXXXXXXXSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKM 343
C+LGCL SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKM
Sbjct: 18 CLLGCLLSHAAAAPSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKM 77
Query: 344 QKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDP 523
QKFFGLPQTG+LDQ+TIETMRKPRCGNPDVANYNFFPRKPKWDK QITYRIIGYTPDLDP
Sbjct: 78 QKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDP 137
Query: 524 ETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAP 703
ETVDDAFARAF+VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAP
Sbjct: 138 ETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAP 197
Query: 704 GPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFL 883
G GVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPF FNGKEYNSCTDTGRSDGFL
Sbjct: 198 GTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFL 257
Query: 884 WCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWC 1063
WCSTTYNF+KDGKYGFCPHEALFTMGGNA+GQPCKFPFRFQGTSY+SCTTEGRTDGYRWC
Sbjct: 258 WCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWC 317
Query: 1064 GTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLWCAT 1243
GTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK+ESCTSAGRSDGK+WCAT
Sbjct: 318 GTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCAT 377
Query: 1244 TANYDDDRKWGFC 1282
TANYDDDRKWGFC
Sbjct: 378 TANYDDDRKWGFC 390
Score = 162 bits (410), Expect = 6e-40
Identities = 65/113 (57%), Positives = 83/113 (73%)
Frame = +2
Query: 788 GNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGN 967
GNA+G+ CKFPF F G Y+SCT GR+DG+ WC TT ++D+D KYGFCP A+ T+GGN
Sbjct: 284 GNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGN 343
Query: 968 ADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMS 1126
++G PC FPF F G Y SCT+ GR+DG WC TT +YD D+K+GFCP+ S
Sbjct: 344 SEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYS 396
Score = 78.2 bits (191), Expect = 2e-14
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Frame = +2
Query: 716 GGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCST 895
G +D D+ + + GN++G C FPF+F G +Y SCT GRSDG +WC+T
Sbjct: 318 GTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCAT 377
Query: 896 TYNFDKDGKYGFCPHE--ALFTMGGNADG 976
T N+D D K+GFCP + +LF + + G
Sbjct: 378 TANYDDDRKWGFCPDQGYSLFLVAAHEFG 406
>ref|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo sapiens].
Length = 610
Score = 732 bits (1890), Expect = 0.0
Identities = 328/340 (96%), Positives = 337/340 (99%)
Frame = +2
Query: 263 VQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANY 442
+QYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTG+LDQ+TIETMRKPRCGNPDVANY
Sbjct: 1 MQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANY 60
Query: 443 NFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIM 622
NFFPRKPKWDK QITYRIIGYTPDLDPETVDDAFARAF+VWSDVTPLRFSRIHDGEADIM
Sbjct: 61 NFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIM 120
Query: 623 INFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADG 802
INFGRWEHGDGYPFDGKDGLLAHAFAPG GVGGDSHFDDDELWTLGEGQVVRVKYGNADG
Sbjct: 121 INFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADG 180
Query: 803 EYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQP 982
EYCKFPF FNGKEYNSCTDTGRSDGFLWCSTTYNF+KDGKYGFCPHEALFTMGGNA+GQP
Sbjct: 181 EYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQP 240
Query: 983 CKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCV 1162
CKFPFRFQGTSY+SCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCV
Sbjct: 241 CKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCV 300
Query: 1163 FPFTFLGNKHESCTSAGRSDGKLWCATTANYDDDRKWGFC 1282
FPFTFLGNK+ESCTSAGRSDGK+WCATTANYDDDRKWGFC
Sbjct: 301 FPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC 340
Score = 162 bits (410), Expect = 6e-40
Identities = 65/113 (57%), Positives = 83/113 (73%)
Frame = +2
Query: 788 GNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGN 967
GNA+G+ CKFPF F G Y+SCT GR+DG+ WC TT ++D+D KYGFCP A+ T+GGN
Sbjct: 234 GNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGN 293
Query: 968 ADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMS 1126
++G PC FPF F G Y SCT+ GR+DG WC TT +YD D+K+GFCP+ S
Sbjct: 294 SEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYS 346
Score = 78.2 bits (191), Expect = 2e-14
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Frame = +2
Query: 716 GGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCST 895
G +D D+ + + GN++G C FPF+F G +Y SCT GRSDG +WC+T
Sbjct: 268 GTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCAT 327
Query: 896 TYNFDKDGKYGFCPHE--ALFTMGGNADG 976
T N+D D K+GFCP + +LF + + G
Sbjct: 328 TANYDDDRKWGFCPDQGYSLFLVAAHEFG 356
>ref|NP_004985.2| matrix metalloproteinase-9 preproprotein [Homo sapiens].
Length = 707
Score = 464 bits (1193), Expect = e-130
Identities = 219/380 (57%), Positives = 270/380 (71%), Gaps = 8/380 (2%)
Frame = +2
Query: 167 VLGCLXXXXXXXXSPIIKFPGDVAPK-TDKELAVQYLNTFYGCPK------ESCNLFVLK 325
VLGC S ++ FPGD+ TD++LA +YL YG + ES +L
Sbjct: 13 VLGCCFAAPRQRQSTLVLFPGDLRTNLTDRQLAEEYLYR-YGYTRVAEMRGESKSL---G 68
Query: 326 DTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGY 505
L +QK LP+TGELD +T++ MR PRCG PD+ + F KW ITY I Y
Sbjct: 69 PALLLLQKQLSLPETGELDSATLKAMRTPRCGVPDLGRFQTFEGDLKWHHHNITYWIQNY 128
Query: 506 TPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLL 685
+ DL +DDAFARAF +WS VTPL F+R++ +ADI+I FG EHGDGYPFDGKDGLL
Sbjct: 129 SEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLL 188
Query: 686 AHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTG 865
AHAF PGPG+ GD+HFDDDELW+LG+G VV ++GNADG C FPF F G+ Y++CT G
Sbjct: 189 AHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACHFPFIFEGRSYSACTTDG 248
Query: 866 RSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRT 1045
RSDG WCSTT N+D D ++GFCP E L+T GNADG+PC+FPF FQG SY++CTT+GR+
Sbjct: 249 RSDGLPWCSTTANYDTDDRFGFCPSERLYTQDGNADGKPCQFPFIFQGQSYSACTTDGRS 308
Query: 1046 DGYRWCGTTEDYDRDKKYGFCPETAMSTV-GGNSEGAPCVFPFTFLGNKHESCTSAGRSD 1222
DGYRWC TT +YDRDK +GFCP A STV GGNS G CVFPFTFLG ++ +CTS GR D
Sbjct: 309 DGYRWCATTANYDRDKLFGFCPTRADSTVMGGNSAGELCVFPFTFLGKEYSTCTSEGRGD 368
Query: 1223 GKLWCATTANYDDDRKWGFC 1282
G+LWCATT+N+D D+KWGFC
Sbjct: 369 GRLWCATTSNFDSDKKWGFC 388
Score = 82.0 bits (201), Expect = 1e-15
Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Frame = +2
Query: 788 GNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHE--ALFTMG 961
GN+ GE C FPF+F GKEY++CT GR DG LWC+TT NFD D K+GFCP + +LF +
Sbjct: 340 GNSAGELCVFPFTFLGKEYSTCTSEGRGDGRLWCATTSNFDSDKKWGFCPDQGYSLFLVA 399
Query: 962 GNADG 976
+ G
Sbjct: 400 AHEFG 404
>ref|NP_002418.1| collagenase 3 preproprotein [Homo sapiens].
Length = 471
Score = 213 bits (541), Expect = 4e-55
Identities = 101/181 (55%), Positives = 126/181 (69%), Gaps = 6/181 (3%)
Frame = +2
Query: 230 DVAPKTDKELAVQYLNTFY------GCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQST 391
D + D + A +YL ++Y G KE+ + + L++MQ FFGL TG+LD +T
Sbjct: 29 DDLSEEDLQFAERYLRSYYHPTNLAGILKENA-ASSMTERLREMQSFFGLEVTGKLDDNT 87
Query: 392 IETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSD 571
++ M+KPRCG PDV YN FPR KW K +TYRI+ YTPD+ V+ AF +AF+VWSD
Sbjct: 88 LDVMKKPRCGVPDVGEYNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSD 147
Query: 572 VTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELW 751
VTPL F+R+HDG ADIMI+FG EHGD YPFDG GLLAHAF PGP GGD+HFDDDE W
Sbjct: 148 VTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW 207
Query: 752 T 754
T
Sbjct: 208 T 208
>ref|NP_002413.1| stromelysin-1 preproprotein [Homo sapiens].
Length = 477
Score = 204 bits (520), Expect = 1e-52
Identities = 95/176 (53%), Positives = 120/176 (68%), Gaps = 6/176 (3%)
Frame = +2
Query: 245 TDKELAVQYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMR 406
T L +YL +Y K+ KD+ +++MQKF GL TG+LD T+E MR
Sbjct: 29 TSMNLVQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMR 88
Query: 407 KPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLR 586
KPRCG PDV ++ FP PKW KT +TYRI+ YTPDL + VD A +A +VW +VTPL
Sbjct: 89 KPRCGVPDVGHFRTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLT 148
Query: 587 FSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
FSR+++GEADIMI+F EHGD YPFDG +LAHA+APGPG+ GD+HFDDDE WT
Sbjct: 149 FSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT 204
>ref|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens].
Length = 476
Score = 199 bits (506), Expect = 5e-51
Identities = 97/177 (54%), Positives = 121/177 (68%), Gaps = 7/177 (3%)
Frame = +2
Query: 245 TDKELAVQYLNTFYGCPKE-------SCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETM 403
++K+LA QYL +Y K+ NL V K ++ MQKF GL TG+LD T+E M
Sbjct: 29 SNKDLAQQYLEKYYNLEKDVKQFRRKDSNLIVKK--IQGMQKFLGLEVTGKLDTDTLEVM 86
Query: 404 RKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPL 583
RKPRCG PDV +++ FP PKW KT +TYRI+ YTPDL + VD A +A +VW +VTPL
Sbjct: 87 RKPRCGVPDVGHFSSFPGMPKWRKTHLTYRIVNYTPDLPRDAVDSAIEKALKVWEEVTPL 146
Query: 584 RFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
FSR+++GEADIMI+F EHGD Y FDG LAHA+ PGPG+ GD HFDDDE WT
Sbjct: 147 TFSRLYEGEADIMISFAVKEHGDFYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWT 203
>ref|NP_002414.1| matrilysin preproprotein [Homo sapiens].
Length = 267
Score = 189 bits (479), Expect = 6e-48
Identities = 93/178 (52%), Positives = 110/178 (61%)
Frame = +2
Query: 254 ELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDV 433
E A YL FY E+ N L+ LK+MQKFFGLP TG L+ IE M+KPRCG PDV
Sbjct: 33 EQAQDYLKRFYLYDSETKNANSLEAKLKEMQKFFGLPITGMLNSRVIEIMQKPRCGVPDV 92
Query: 434 ANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEA 613
A Y+ FP PKW +TYRI+ YT DL TVD ++A +W PL F ++ G A
Sbjct: 93 AEYSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTA 152
Query: 614 DIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKY 787
DIMI F R HGD YPFDG LAHAFAPG G+GGD+HFD+DE WT G + Y
Sbjct: 153 DIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLY 210
>ref|NP_002417.2| macrophage metalloelastase preproprotein [Homo sapiens].
Length = 470
Score = 185 bits (470), Expect = 7e-47
Identities = 92/176 (52%), Positives = 117/176 (66%), Gaps = 9/176 (5%)
Frame = +2
Query: 266 QYLNTFYGCP---------KESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRC 418
+YL FYG K S NL +K+ +++MQ F GL TG+LD ST+E M PRC
Sbjct: 35 RYLEKFYGLEINKLPVTKMKYSGNL--MKEKIQEMQHFLGLKVTGQLDTSTLEMMHAPRC 92
Query: 419 GNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRI 598
G PDV ++ P P W K ITYRI YTPD++ E VD A +AF+VWS+VTPL+FS+I
Sbjct: 93 GVPDVHHFREMPGGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKI 152
Query: 599 HDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEG 766
+ G ADI++ F R HGD + FDGK G+LAHAF PG G+GGD+HFD+DE WT G
Sbjct: 153 NTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG 208
>ref|NP_004762.2| matrix metalloproteinase-20 preproprotein [Homo sapiens].
Length = 483
Score = 184 bits (468), Expect = 1e-46
Identities = 83/143 (58%), Positives = 102/143 (71%)
Frame = +2
Query: 332 LKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTP 511
+K++Q FFGL TG+LDQ+T+ ++KPRCG PDVANY FP +PKW K +TYRI YTP
Sbjct: 72 IKELQAFFGLQVTGKLDQTTMNVIKKPRCGVPDVANYRLFPGEPKWKKNTLTYRISKYTP 131
Query: 512 DLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAH 691
+ VD A A + WS PL F RI+ GEADIMI+F +HGD YPFDG G LAH
Sbjct: 132 SMSSVEVDKAVEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTLAH 191
Query: 692 AFAPGPGVGGDSHFDDDELWTLG 760
AFAPG G+GGD+HFD+ E WT+G
Sbjct: 192 AFAPGEGLGGDTHFDNAEKWTMG 214
>ref|NP_002412.1| interstitial collagenase isoform 1 preproprotein [Homo sapiens].
Length = 469
Score = 181 bits (460), Expect = 1e-45
Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 6/175 (3%)
Frame = +2
Query: 248 DKELAVQYLNTFYGCPKESC------NLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 409
D +L +YL +Y + N + + LK+MQ+FFGL TG+ D T++ M++
Sbjct: 30 DVDLVQKYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQ 89
Query: 410 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 589
PRCG PDVA + P+W++T +TYRI YTPDL VD A +AF++WS+VTPL F
Sbjct: 90 PRCGVPDVAQFVLTEGNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTF 149
Query: 590 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
+++ +G+ADIMI+F R +H D PFDG G LAHAF PGPG+GGD+HFD+DE WT
Sbjct: 150 TKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,996,308
Number of extensions: 1335111
Number of successful extensions: 5624
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 5520
Number of HSP's successfully gapped: 88
Length of query: 428
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 323
Effective length of database: 14,835,944
Effective search space: 4792009912
Effective search space used: 4792009912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004524
(1284 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032636.1| 72 kDa type IV collagenase precursor [Mus muscu... 774 0.0
Alignment gi|NP_038627.1| matrix metalloproteinase-9 precursor [Mus muscu... 441 e-124
Alignment gi|NP_032633.1| collagenase 3 preproprotein [Mus musculus]. 212 4e-55
Alignment gi|NP_062344.1| stromelysin-2 precursor [Mus musculus]. 203 3e-52
Alignment gi|NP_034939.1| stromelysin-1 preproprotein [Mus musculus]. 203 3e-52
Alignment gi|NP_034940.2| matrilysin [Mus musculus]. 190 2e-48
Alignment gi|NP_032631.3| macrophage metalloelastase precursor [Mus muscu... 187 2e-47
Alignment gi|NP_038931.1| matrix metalloproteinase-20 precursor [Mus musc... 186 3e-47
Alignment gi|NP_114395.1| interstitial collagenase A precursor [Mus muscu... 175 6e-44
Alignment gi|NP_032637.3| neutrophil collagenase precursor [Mus musculus]. 171 9e-43
>ref|NP_032636.1| 72 kDa type IV collagenase precursor [Mus musculus].
Length = 662
Score = 774 bits (1999), Expect = 0.0
Identities = 353/389 (90%), Positives = 362/389 (93%)
Frame = +2
Query: 116 EARXXXXXXXXXXXXXCVLGCLXXXXXXXXSPIIKFPGDVAPKTDKELAVQYLNTFYGCP 295
EAR CVL CL SPIIKFPGDVAPKTDKELAVQYLNTFYGCP
Sbjct: 2 EARVAWGALAGPLRVLCVLCCLLGRAIAAPSPIIKFPGDVAPKTDKELAVQYLNTFYGCP 61
Query: 296 KESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDK 475
KESCNLFVLKDTLKKMQKFFGLPQTG+LDQ+TIETMRKPRCGNPDVANYNFFPRKPKWDK
Sbjct: 62 KESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDK 121
Query: 476 TQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDG 655
QITYRIIGYTPDLDPETVDDAFARA +VWSDVTPLRFSRIHDGEADIMINFGRWEHGDG
Sbjct: 122 NQITYRIIGYTPDLDPETVDDAFARALKVWSDVTPLRFSRIHDGEADIMINFGRWEHGDG 181
Query: 656 YPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNG 835
YPFDGKDGLLAHAFAPG GVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPF FNG
Sbjct: 182 YPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNG 241
Query: 836 KEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTS 1015
+EY+SCTDTGRSDGFLWCSTTYNF+KDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTS
Sbjct: 242 REYSSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTS 301
Query: 1016 YNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKHE 1195
YNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK+E
Sbjct: 302 YNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYE 361
Query: 1196 SCTSAGRSDGKLWCATTANYDDDRKWGFC 1282
SCTSAGR+DGK+WCATT NYDDDRKWGFC
Sbjct: 362 SCTSAGRNDGKVWCATTTNYDDDRKWGFC 390
Score = 164 bits (416), Expect = 1e-40
Identities = 67/113 (59%), Positives = 82/113 (72%)
Frame = +2
Query: 788 GNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGN 967
GNADG+ CKFPF F G YNSCT GR+DG+ WC TT ++D+D KYGFCP A+ T+GGN
Sbjct: 284 GNADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGN 343
Query: 968 ADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMS 1126
++G PC FPF F G Y SCT+ GR DG WC TT +YD D+K+GFCP+ S
Sbjct: 344 SEGAPCVFPFTFLGNKYESCTSAGRNDGKVWCATTTNYDDDRKWGFCPDQGYS 396
Score = 76.6 bits (187), Expect = 4e-14
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Frame = +2
Query: 716 GGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCST 895
G +D D+ + + GN++G C FPF+F G +Y SCT GR+DG +WC+T
Sbjct: 318 GTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRNDGKVWCAT 377
Query: 896 TYNFDKDGKYGFCPHE--ALFTMGGNADG 976
T N+D D K+GFCP + +LF + + G
Sbjct: 378 TTNYDDDRKWGFCPDQGYSLFLVAAHEFG 406
>ref|NP_038627.1| matrix metalloproteinase-9 precursor [Mus musculus].
Length = 730
Score = 441 bits (1133), Expect = e-124
Identities = 209/376 (55%), Positives = 261/376 (69%), Gaps = 6/376 (1%)
Frame = +2
Query: 173 GCLXXXXXXXXSPIIKFPGDVAPK--TDKELAVQYLNTFYGCPKESCNLFV---LKDTLK 337
GC + FP D+ TD +LA YL YG + + + L+ L
Sbjct: 15 GCSSAAPYQRQPTFVVFPKDLKTSNLTDTQLAEAYLYR-YGYTRAAQMMGEKQSLRPALL 73
Query: 338 KMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDL 517
+QK LPQTGELD T++ +R PRCG PDV + F + KWD ITY I Y+ DL
Sbjct: 74 MLQKQLSLPQTGELDSQTLKAIRTPRCGVPDVGRFQTF-KGLKWDHHNITYWIQNYSEDL 132
Query: 518 DPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 697
+ +DDAFARAF VW +V PL F+R++ EADI+I FG EHGDGYPFDGKDGLLAHAF
Sbjct: 133 PRDMIDDAFARAFAVWGEVAPLTFTRVYGPEADIVIQFGVAEHGDGYPFDGKDGLLAHAF 192
Query: 698 APGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDG 877
PG GV GD+HFDDDELW+LG+G V+ YGN++G C FPF+F G+ Y++CT GR+DG
Sbjct: 193 PPGAGVQGDAHFDDDELWSLGKGVVIPTYYGNSNGAPCHFPFTFEGRSYSACTTDGRNDG 252
Query: 878 FLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYR 1057
WCSTT ++DKDGK+GFCP E L+T GN +G+PC FPF F+G SY++CTT+GR+DGYR
Sbjct: 253 TPWCSTTADYDKDGKFGFCPSERLYTEHGNGEGKPCVFPFIFEGRSYSACTTKGRSDGYR 312
Query: 1058 WCGTTEDYDRDKKYGFCPETAMST-VGGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLW 1234
WC TT +YD+DK YGFCP +T VGGNS G CVFPF FLG ++ SCTS GR DG+LW
Sbjct: 313 WCATTANYDQDKLYGFCPTRVDATVVGGNSAGELCVFPFVFLGKQYSSCTSDGRRDGRLW 372
Query: 1235 CATTANYDDDRKWGFC 1282
CATT+N+D D+KWGFC
Sbjct: 373 CATTSNFDTDKKWGFC 388
Score = 82.8 bits (203), Expect = 5e-16
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +2
Query: 725 SHFDDDELWTLGEGQV-VRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTY 901
+++D D+L+ +V V GN+ GE C FPF F GK+Y+SCT GR DG LWC+TT
Sbjct: 318 ANYDQDKLYGFCPTRVDATVVGGNSAGELCVFPFVFLGKQYSSCTSDGRRDGRLWCATTS 377
Query: 902 NFDKDGKYGFCPHE--ALFTMGGNADG 976
NFD D K+GFCP + +LF + + G
Sbjct: 378 NFDTDKKWGFCPDQGYSLFLVAAHEFG 404
>ref|NP_032633.1| collagenase 3 preproprotein [Mus musculus].
Length = 472
Score = 212 bits (540), Expect = 4e-55
Identities = 103/181 (56%), Positives = 124/181 (68%), Gaps = 6/181 (3%)
Frame = +2
Query: 230 DVAPKTDKELAVQYLNTFY------GCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQST 391
D + D A YL ++Y G K+S + D L++MQ FFGL TG+LD T
Sbjct: 30 DDLSEEDLVFAEHYLKSYYHPATLAGILKKSTVTSTV-DRLREMQSFFGLEVTGKLDDPT 88
Query: 392 IETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSD 571
++ MRKPRCG PDV YN FPR KW +T +TYRI+ YTPD+ V+ AF +AF+VWSD
Sbjct: 89 LDIMRKPRCGVPDVGEYNVFPRTLKWSQTNLTYRIVNYTPDMSHSEVEKAFRKAFKVWSD 148
Query: 572 VTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELW 751
VTPL F+RI+DG ADIMI+FG EHGD YPFDG GLLAHAF PGP GGD+HFDDDE W
Sbjct: 149 VTPLNFTRIYDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETW 208
Query: 752 T 754
T
Sbjct: 209 T 209
>ref|NP_062344.1| stromelysin-2 precursor [Mus musculus].
Length = 476
Score = 203 bits (516), Expect = 3e-52
Identities = 97/174 (55%), Positives = 119/174 (68%), Gaps = 6/174 (3%)
Frame = +2
Query: 254 ELAVQYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMRKPR 415
+LA QYL +Y K +F KD+ +++MQKF GL TG+LD +T+E M KPR
Sbjct: 32 DLAQQYLEKYYNFKKNEKQIFKRKDSSPVVKKIQEMQKFLGLEMTGKLDSNTMELMHKPR 91
Query: 416 CGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSR 595
CG PDV ++ FP PKW K+ ITYRI+ YTPDL ++VD A +A +VW +VTPL FSR
Sbjct: 92 CGVPDVGGFSTFPGSPKWRKSHITYRIVNYTPDLPRQSVDSAIEKALKVWEEVTPLTFSR 151
Query: 596 IHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTL 757
I +GEADIMI+F EHGD YPFDG LAHA+ PGPG GD HFDDDE WTL
Sbjct: 152 ISEGEADIMISFAVGEHGDFYPFDGPGQSLAHAYPPGPGFYGDVHFDDDEKWTL 205
>ref|NP_034939.1| stromelysin-1 preproprotein [Mus musculus].
Length = 479
Score = 203 bits (516), Expect = 3e-52
Identities = 95/173 (54%), Positives = 120/173 (69%), Gaps = 6/173 (3%)
Frame = +2
Query: 254 ELAVQYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMRKPR 415
EL +YL +YG K+ KD+ +++MQKF GL TG+LD +T+E M KPR
Sbjct: 34 ELLQKYLENYYGLAKDVKQFIKKKDSSLIVKKIQEMQKFLGLEMTGKLDSNTMELMHKPR 93
Query: 416 CGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSR 595
CG PDV ++ FP PKW K+ ITYRI+ YTPDL ++VD A +A +VW +VTPL FSR
Sbjct: 94 CGVPDVGGFSTFPGSPKWRKSHITYRIVNYTPDLPRQSVDSAIEKALKVWEEVTPLTFSR 153
Query: 596 IHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
I +GEADIMI+F EHGD PFDG +LAHA+APGPG+ GD+HFDDDE WT
Sbjct: 154 ISEGEADIMISFAVGEHGDFVPFDGPGTVLAHAYAPGPGINGDAHFDDDERWT 206
>ref|NP_034940.2| matrilysin [Mus musculus].
Length = 267
Score = 190 bits (482), Expect = 2e-48
Identities = 94/185 (50%), Positives = 115/185 (62%)
Frame = +2
Query: 209 PIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQS 388
P+ + GDV+ E A YL FY ++ + L D LK+MQKFFGLP TG+L
Sbjct: 22 PLSQEAGDVSAH-QWEQAQNYLRKFYPHDSKTKKVNSLVDNLKEMQKFFGLPMTGKLSPY 80
Query: 389 TIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWS 568
+E M+KPRCG PDVA Y+ P PKW +TYRI+ YT DL VD +A R+WS
Sbjct: 81 IMEIMQKPRCGVPDVAEYSLMPNSPKWHSRIVTYRIVSYTSDLPRIVVDQIVKKALRMWS 140
Query: 569 DVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDEL 748
PL F R+ G ADI+I F R +HGD +PFDG L HAFAPGPG+GGD+HFD DE
Sbjct: 141 MQIPLNFKRVSWGTADIIIGFARRDHGDSFPFDGPGNTLGHAFAPGPGLGGDAHFDKDEY 200
Query: 749 WTLGE 763
WT GE
Sbjct: 201 WTDGE 205
>ref|NP_032631.3| macrophage metalloelastase precursor [Mus musculus].
Length = 473
Score = 187 bits (475), Expect = 2e-47
Identities = 94/180 (52%), Positives = 115/180 (63%), Gaps = 7/180 (3%)
Frame = +2
Query: 236 APKTDKELAVQYLNTFYGCPKE-------SCNLFVLKDTLKKMQKFFGLPQTGELDQSTI 394
AP D E A YL+ FY K+ N LK+ L++MQ+FFGL TG+LD ST+
Sbjct: 29 APMNDSEFAEWYLSRFYDYGKDRIPMTKTKTNRNFLKEKLQEMQQFFGLEATGQLDNSTL 88
Query: 395 ETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDV 574
M PRCG PDV + P++ +W K +TYRI YTPD+ E VD F +AF+VWSDV
Sbjct: 89 AIMHIPRCGVPDVQHLRAVPQRSRWMKRYLTYRIYNYTPDMKREDVDYIFQKAFQVWSDV 148
Query: 575 TPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
TPLRF ++H EADIMI F HGD FDGK G LAHAF PGPG+ GD+HFD+ E WT
Sbjct: 149 TPLRFRKLHKDEADIMILFAFGAHGDFNYFDGKGGTLAHAFYPGPGIQGDAHFDEAETWT 208
>ref|NP_038931.1| matrix metalloproteinase-20 precursor [Mus musculus].
Length = 482
Score = 186 bits (472), Expect = 3e-47
Identities = 84/143 (58%), Positives = 102/143 (71%)
Frame = +2
Query: 332 LKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTP 511
+K++Q FFGL TG+LDQ+T+ ++KPRCG PDVANY FP +PKW K +TYRI YTP
Sbjct: 71 IKELQIFFGLKVTGKLDQNTMNVIKKPRCGVPDVANYRLFPGEPKWKKNILTYRISKYTP 130
Query: 512 DLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAH 691
+ P VD A A WS PL F RI+ GEADIMI+F +HGD YPFDG G LAH
Sbjct: 131 SMSPTEVDKAIQMALHAWSTAVPLNFVRINSGEADIMISFETGDHGDSYPFDGPRGTLAH 190
Query: 692 AFAPGPGVGGDSHFDDDELWTLG 760
AFAPG G+GGD+HFD+ E WT+G
Sbjct: 191 AFAPGEGLGGDTHFDNAEKWTMG 213
>ref|NP_114395.1| interstitial collagenase A precursor [Mus musculus].
Length = 464
Score = 175 bits (444), Expect = 6e-44
Identities = 85/172 (49%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Frame = +2
Query: 254 ELAVQYLNTFYGCPK--ESCNLF---VLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRC 418
E +YL +Y K ++ N+ ++ + L++MQ+ FGL TG D T+ M+KPRC
Sbjct: 30 ETVWKYLENYYNLGKNMQAKNVNGKEMMAEKLRQMQQLFGLKVTGNSDPETLRAMKKPRC 89
Query: 419 GNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRI 598
G PDVA Y P+W KT +TY I+ YTP L V+DA ARAFRVWSDVTPL F R+
Sbjct: 90 GVPDVAPYAITHNNPRWTKTHLTYSILNYTPYLPKAVVEDAIARAFRVWSDVTPLTFQRV 149
Query: 599 HDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
+ E DI+++F R +HGD PFDG + LAH F PGPG+GGD H+D DE WT
Sbjct: 150 FEEEGDIVLSFHRGDHGDNNPFDGPNYKLAHTFQPGPGLGGDVHYDLDETWT 201
>ref|NP_032637.3| neutrophil collagenase precursor [Mus musculus].
Length = 465
Score = 171 bits (434), Expect = 9e-43
Identities = 83/169 (49%), Positives = 106/169 (62%), Gaps = 4/169 (2%)
Frame = +2
Query: 260 AVQYLNTFYGCP----KESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNP 427
A YL FY P + S N ++ + LK+MQ+FF L +TG+LD +T+ M PRCG P
Sbjct: 35 AENYLRKFYNLPSNQFRSSRNATMVAEKLKEMQRFFSLAETGKLDAATMGIMEMPRCGVP 94
Query: 428 DVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDG 607
D ++ P PKW T +TYRII +TP L V A +AF VWS +PL F+ I G
Sbjct: 95 DSGDFLLTPGSPKWTHTNLTYRIINHTPQLSRAEVKTAIEKAFHVWSVASPLTFTEILQG 154
Query: 608 EADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
EADI I F +HGD PFDG +G+LAHAF PG G+GGD+HFD +E WT
Sbjct: 155 EADINIAFVSRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDSEETWT 203
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,269,583
Number of extensions: 1111058
Number of successful extensions: 4326
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 4256
Number of HSP's successfully gapped: 56
Length of query: 428
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 324
Effective length of database: 12,493,815
Effective search space: 4047996060
Effective search space used: 4047996060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004524
(1284 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999357.1| 72 kDa type IV collagenase [Sus scrofa]. 805 0.0
Alignment gi|NP_001033093.1| matrix metalloproteinase-9 [Sus scrofa]. 446 e-125
Alignment gi|XP_003129856.1| PREDICTED: collagenase 3 [Sus scrofa]. 215 4e-56
Alignment gi|NP_001093408.1| macrophage metalloelastase [Sus scrofa]. 190 2e-48
Alignment gi|NP_001159701.1| interstitial collagenase [Sus scrofa]. 188 6e-48
Alignment gi|NP_999070.1| matrix metalloproteinase-20 precursor [Sus scro... 184 9e-47
Alignment gi|NP_001159780.1| stromelysin-1 [Sus scrofa]. 182 3e-46
Alignment gi|XP_003357310.1| PREDICTED: neutrophil collagenase-like [Sus ... 174 7e-44
Alignment gi|XP_003129864.1| PREDICTED: neutrophil collagenase [Sus scrof... 174 1e-43
Alignment gi|XP_003357313.1| PREDICTED: matrix metalloproteinase-27-like ... 158 5e-39
>ref|NP_999357.1| 72 kDa type IV collagenase [Sus scrofa].
Length = 661
Score = 805 bits (2080), Expect = 0.0
Identities = 370/391 (94%), Positives = 370/391 (94%)
Frame = +2
Query: 110 MTEARXXXXXXXXXXXXXCVLGCLXXXXXXXXSPIIKFPGDVAPKTDKELAVQYLNTFYG 289
MTEAR CVLGCL SPIIKFPGDVAPKTDKELAVQYLNTFYG
Sbjct: 1 MTEARGARGALAGPLRALCVLGCLLGRAAAAPSPIIKFPGDVAPKTDKELAVQYLNTFYG 60
Query: 290 CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW 469
CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW
Sbjct: 61 CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW 120
Query: 470 DKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHG 649
DKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHG
Sbjct: 121 DKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHG 180
Query: 650 DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSF 829
DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSF
Sbjct: 181 DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSF 240
Query: 830 NGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG 1009
NGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG
Sbjct: 241 NGKEYNSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG 300
Query: 1010 TSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK 1189
TSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK
Sbjct: 301 TSYNSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK 360
Query: 1190 HESCTSAGRSDGKLWCATTANYDDDRKWGFC 1282
HESCTSAGRSDGKLWCATTANYDDDRKWGFC
Sbjct: 361 HESCTSAGRSDGKLWCATTANYDDDRKWGFC 391
Score = 165 bits (417), Expect = 6e-41
Identities = 69/133 (51%), Positives = 90/133 (67%)
Frame = +2
Query: 728 HFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCSTTYNF 907
+FD D + + + GNADG+ CKFPF F G YNSCT GR+DG+ WC TT ++
Sbjct: 265 NFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDY 324
Query: 908 DKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDR 1087
D+D KYGFCP A+ T+GGN++G PC FPF F G + SCT+ GR+DG WC TT +YD
Sbjct: 325 DRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLWCATTANYDD 384
Query: 1088 DKKYGFCPETAMS 1126
D+K+GFCP+ S
Sbjct: 385 DRKWGFCPDQGYS 397
Score = 77.0 bits (188), Expect = 2e-14
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Frame = +2
Query: 716 GGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCST 895
G +D D+ + + GN++G C FPF+F G ++ SCT GRSDG LWC+T
Sbjct: 319 GTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLWCAT 378
Query: 896 TYNFDKDGKYGFCPHE--ALFTMGGNADG 976
T N+D D K+GFCP + +LF + + G
Sbjct: 379 TANYDDDRKWGFCPDQGYSLFLVAAHEFG 407
>ref|NP_001033093.1| matrix metalloproteinase-9 [Sus scrofa].
Length = 708
Score = 446 bits (1146), Expect = e-125
Identities = 211/376 (56%), Positives = 264/376 (70%), Gaps = 4/376 (1%)
Frame = +2
Query: 167 VLGCLXXXXXXXXSPIIKFPGDVAPKT-DKELAVQYLNTF-YGCPKESCNLFV-LKDTLK 337
VLGC + ++ FPGD+ D++LA +YL + Y E + L+ LK
Sbjct: 13 VLGCSAAPKPRQPTFVV-FPGDLRTNLIDRQLAEEYLYRYGYTQVAEMTDRKQSLEPALK 71
Query: 338 KMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDL 517
+Q+ LPQTGELD +T+ MR PRCG PD+ + F KW +TY I Y+ DL
Sbjct: 72 LLQQRLSLPQTGELDTTTLNAMRAPRCGVPDLGKFQTFEGDLKWHHHDMTYWIQNYSEDL 131
Query: 518 DPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 697
+ +DDAF RAF +WS+ TPL +R++ ADI+I FG EHGDGYPFDGKDGLLAHAF
Sbjct: 132 SRDVIDDAFVRAFSLWSEATPLNCTRVYGPNADIVIQFGVKEHGDGYPFDGKDGLLAHAF 191
Query: 698 APGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDG 877
PGPG+ GD+HFDD+ELW+LG+G VV +GNA G C FPF+F G+ Y++CT GRSD
Sbjct: 192 PPGPGIQGDAHFDDEELWSLGKGVVVPTYFGNAKGAACHFPFTFEGRSYSACTTDGRSDD 251
Query: 878 FLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYR 1057
LWCSTT ++D D ++GFCP E LFT GNADG+PC FPF F+G SY+SCTT+GR+DGYR
Sbjct: 252 MLWCSTTADYDTDRQFGFCPSERLFTRDGNADGKPCVFPFTFEGRSYSSCTTDGRSDGYR 311
Query: 1058 WCGTTEDYDRDKKYGFCPETAMSTV-GGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKLW 1234
WCGTT +YD+DK YGFCP A STV GGNS G CVFPFTFLG ++ +CT GRSDG LW
Sbjct: 312 WCGTTANYDQDKLYGFCPTRADSTVTGGNSAGDLCVFPFTFLGKEYSACTREGRSDGHLW 371
Query: 1235 CATTANYDDDRKWGFC 1282
CATT+N+D D+KWGFC
Sbjct: 372 CATTSNFDKDKKWGFC 387
Score = 86.3 bits (212), Expect = 3e-17
Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
Frame = +2
Query: 716 GGDSHFDDDELWTLGEGQV-VRVKYGNADGEYCKFPFSFNGKEYNSCTDTGRSDGFLWCS 892
G +++D D+L+ + V GN+ G+ C FPF+F GKEY++CT GRSDG LWC+
Sbjct: 314 GTTANYDQDKLYGFCPTRADSTVTGGNSAGDLCVFPFTFLGKEYSACTREGRSDGHLWCA 373
Query: 893 TTYNFDKDGKYGFCPHE--ALFTMGGNADG 976
TT NFDKD K+GFCP + +LF + + G
Sbjct: 374 TTSNFDKDKKWGFCPDQGYSLFLVAAHEFG 403
>ref|XP_003129856.1| PREDICTED: collagenase 3 [Sus scrofa].
Length = 470
Score = 215 bits (548), Expect = 4e-56
Identities = 105/182 (57%), Positives = 130/182 (71%), Gaps = 6/182 (3%)
Frame = +2
Query: 227 GDVAPKTDKELAVQYLNTFY------GCPKESCNLFVLKDTLKKMQKFFGLPQTGELDQS 388
GD++ + D +LA YL ++Y G K++ V+ D LK+MQ FFGL TG+LD +
Sbjct: 28 GDLSEE-DFQLAENYLKSYYYPMNPAGILKKTAASSVV-DRLKEMQSFFGLEVTGKLDDN 85
Query: 389 TIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWS 568
T++ M+KPRCG PDV YN FPR KW + +TYRI+ YTPDL V+ AF +AF+VWS
Sbjct: 86 TLDIMKKPRCGVPDVGEYNVFPRTLKWSQMNLTYRIVNYTPDLTHSEVEKAFKKAFKVWS 145
Query: 569 DVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDEL 748
DVTPL F+RIH+G ADIMI+FG EHGD YPFDG GLLAHAF PGP GGD+HFDDDE
Sbjct: 146 DVTPLNFTRIHNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDET 205
Query: 749 WT 754
WT
Sbjct: 206 WT 207
>ref|NP_001093408.1| macrophage metalloelastase [Sus scrofa].
Length = 466
Score = 190 bits (482), Expect = 2e-48
Identities = 92/183 (50%), Positives = 124/183 (67%), Gaps = 8/183 (4%)
Frame = +2
Query: 230 DVAPKTDKELAVQ-YLNTFYGCPKESCNLFVLK-------DTLKKMQKFFGLPQTGELDQ 385
D++P+ + + Q +L FYG E+ + +K D +++MQ+F GL TG+LD
Sbjct: 22 DLSPEENHVVFAQKFLGKFYGLTIETTPMTKIKVNGHSMEDKIQEMQQFLGLNVTGQLDA 81
Query: 386 STIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVW 565
T++ M KPRCG PDV N+ F P +P W K +TYRI YTPD+ P+ VD A +AF+ W
Sbjct: 82 PTLDMMHKPRCGVPDVHNFMFMPGRPVWKKHFLTYRINNYTPDMRPKDVDYAIQKAFQAW 141
Query: 566 SDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDE 745
S+VTPL+F +I GEADIMI F EHGD FDG+ G+LAHAFAPGPG+GGD+HFD+ E
Sbjct: 142 SNVTPLKFRKIDAGEADIMIKFALGEHGDFNSFDGQGGVLAHAFAPGPGIGGDAHFDEAE 201
Query: 746 LWT 754
+WT
Sbjct: 202 IWT 204
>ref|NP_001159701.1| interstitial collagenase [Sus scrofa].
Length = 469
Score = 188 bits (477), Expect = 6e-48
Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 6/175 (3%)
Frame = +2
Query: 248 DKELAVQYLNTFY-----GCPKESC-NLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRK 409
D E+ +YL +Y G P E N ++ + LK+MQ+FFGL TG+ D T+ M++
Sbjct: 30 DVEIVQKYLKNYYNLNSDGVPVEKKRNSGLVVEKLKQMQQFFGLKVTGKPDAETLNVMKQ 89
Query: 410 PRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRF 589
PRCG PDVA + P P+W+ T +TYRI YTPDL E VD A +AF++WS+V+PL F
Sbjct: 90 PRCGVPDVAEFVLTPGNPRWENTHLTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTF 149
Query: 590 SRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
+++ +G+ADIMI+F R +H D PFDG G LAHAF PGPG+GGD+HFD+DE WT
Sbjct: 150 TKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT 204
>ref|NP_999070.1| matrix metalloproteinase-20 precursor [Sus scrofa].
Length = 483
Score = 184 bits (467), Expect = 9e-47
Identities = 81/143 (56%), Positives = 104/143 (72%)
Frame = +2
Query: 332 LKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTP 511
+K++Q FFGL TG+LD++T++ +++PRCG PDVANY FP +PKW K +TYRI YTP
Sbjct: 72 IKELQAFFGLRVTGKLDRTTMDVIKRPRCGVPDVANYRLFPGEPKWKKNTLTYRISKYTP 131
Query: 512 DLDPETVDDAFARAFRVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAH 691
+ P VD A A + WS PL F R++ GEADIMI+F +HGD YPFDG G LAH
Sbjct: 132 SMTPAEVDKAMEMALQAWSSAVPLSFVRVNAGEADIMISFETGDHGDSYPFDGPRGTLAH 191
Query: 692 AFAPGPGVGGDSHFDDDELWTLG 760
AFAPG G+GGD+HFD+ E WT+G
Sbjct: 192 AFAPGEGLGGDTHFDNAEKWTMG 214
>ref|NP_001159780.1| stromelysin-1 [Sus scrofa].
Length = 477
Score = 182 bits (463), Expect = 3e-46
Identities = 85/169 (50%), Positives = 112/169 (66%), Gaps = 6/169 (3%)
Frame = +2
Query: 266 QYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMRKPRCGNP 427
+YL +Y K+ + KD+ +++MQKF GL TG+LD +T+E M KPRCG P
Sbjct: 36 KYLEDYYNLTKDVKQVVRRKDSSLVVKKIQEMQKFLGLEVTGKLDSNTLEVMHKPRCGVP 95
Query: 428 DVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSRIHDG 607
DV ++ FP PKW K +TYRI+ YT DL +D +A ++W +VTPL FS+I +G
Sbjct: 96 DVGYFSTFPGLPKWRKNDLTYRIVNYTLDLPRSVIDSTIEKALKIWEEVTPLTFSKISEG 155
Query: 608 EADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
EADIMI F EHGD PFDG +LAHA+APGPG+ G++HFDDDE WT
Sbjct: 156 EADIMITFAVREHGDFSPFDGPGKVLAHAYAPGPGIYGEAHFDDDEQWT 204
>ref|XP_003357310.1| PREDICTED: neutrophil collagenase-like [Sus scrofa].
Length = 468
Score = 174 bits (442), Expect = 7e-44
Identities = 85/185 (45%), Positives = 117/185 (63%), Gaps = 8/185 (4%)
Frame = +2
Query: 224 PGDVAPKTDKELAVQYLNTFYGCP--------KESCNLFVLKDTLKKMQKFFGLPQTGEL 379
P + + + ++A YL FY P ++S + V +TLK+MQ+FFGL +TG+L
Sbjct: 24 PSESPEEKNAKIAQDYLEKFYQLPTYRYKYERRKSASEIV--ETLKEMQRFFGLNETGKL 81
Query: 380 DQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFR 559
+ T+E MRKPRCG PD ++ P PKW +T +TYRII YT L V+ A+A +
Sbjct: 82 NNETLEMMRKPRCGVPDSGDFMLTPGNPKWKQTTLTYRIIKYTQQLPKTDVESIIAKALQ 141
Query: 560 VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDD 739
+WS +PL+F + EADI I F + +HGD PFDG +G+LAHAF PGPG+GGD HFD
Sbjct: 142 LWSQASPLKFISTSEEEADIKIAFVQRDHGDNSPFDGPNGILAHAFQPGPGIGGDVHFDA 201
Query: 740 DELWT 754
+E WT
Sbjct: 202 EETWT 206
>ref|XP_003129864.1| PREDICTED: neutrophil collagenase [Sus scrofa].
Length = 468
Score = 174 bits (441), Expect = 1e-43
Identities = 85/185 (45%), Positives = 116/185 (62%), Gaps = 8/185 (4%)
Frame = +2
Query: 224 PGDVAPKTDKELAVQYLNTFYGCP--------KESCNLFVLKDTLKKMQKFFGLPQTGEL 379
P + + + ++A YL FY P ++S + V +TLK+MQ+FFGL +TG L
Sbjct: 24 PSESPEEKNAKIAQDYLEKFYQLPTYRYKYERRKSASEIV--ETLKEMQRFFGLNETGRL 81
Query: 380 DQSTIETMRKPRCGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFR 559
+ T+E MRKPRCG PD ++ P PKW +T +TYRII YT L V+ A+A +
Sbjct: 82 NNETLEMMRKPRCGVPDSGDFMLTPGNPKWKQTTLTYRIIKYTQQLPKTDVESIIAKALQ 141
Query: 560 VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDD 739
+WS +PL+F + EADI I F + +HGD PFDG +G+LAHAF PGPG+GGD HFD
Sbjct: 142 LWSQASPLKFISTSEEEADIKIAFVQRDHGDNSPFDGPNGILAHAFQPGPGIGGDVHFDA 201
Query: 740 DELWT 754
+E WT
Sbjct: 202 EETWT 206
>ref|XP_003357313.1| PREDICTED: matrix metalloproteinase-27-like [Sus scrofa].
Length = 475
Score = 158 bits (400), Expect = 5e-39
Identities = 84/174 (48%), Positives = 107/174 (61%), Gaps = 7/174 (4%)
Frame = +2
Query: 254 ELAVQYLNTFYGCPKESCNLFVLKDT------LKKMQKFFGLPQTGELDQSTIETMRKPR 415
+LA YLN FY E +L K+ +++MQ FFGL TG+LD +T+E M+ PR
Sbjct: 29 QLAQAYLNQFYSLEIEGSHLVQSKNRSLIDGKIREMQAFFGLTVTGKLDSNTLEIMKMPR 88
Query: 416 CGNPDVANYNFFPRKPKWDKTQITYRIIGYTPDLDPETVDDAFARAFRVWSDVTPLRFSR 595
CG PDV Y + P W K +TYRI+ YTPD+ VD+A + VWS+VTPL F++
Sbjct: 89 CGVPDVGQYGY--TLPGWKKYNLTYRIVNYTPDMARVDVDEAIQKGIEVWSNVTPLTFTK 146
Query: 596 IHDGEADIMINFGRWEHGD-GYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWT 754
I G ADIMI F HG FDG G+L HAF PG G+GGD+HFD+DE WT
Sbjct: 147 ISKGIADIMIAFRTRVHGRCPRYFDGPLGVLGHAFPPGLGLGGDTHFDEDENWT 200
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,559,316
Number of extensions: 945800
Number of successful extensions: 3399
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 3329
Number of HSP's successfully gapped: 53
Length of query: 428
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 326
Effective length of database: 8,804,438
Effective search space: 2870246788
Effective search space used: 2870246788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004524
(1284 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 454 e-125
Sscrofa_Chr17 74 2e-10
>Sscrofa_Chr06
|| Length = 157765593
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Minus
Query: 265 gcaatacctgaacaccttctacggctgccccaaagagagttgtaacctgttcgtgctgaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27551076 gcaatacctgaacaccttctacggctgccccaaagagagttgtaacctgttcgtgctgaa 27551017
Query: 325 ggacacactaaagaagatgcagaagttcttcgggctcccccagacaggcgaactcgacca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27551016 ggacacactaaagaagatgcagaagttcttcgggctcccccagacaggcgaactcgacca 27550957
Query: 385 gagcaccatcgagaccatgaggaagccgcgctgcggcaaccccgacgtggccaattacaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27550956 gagcaccatcgagaccatgaggaagccgcgctgcggcaaccccgacgtggccaattacaa 27550897
Query: 445 cttcttcccccgcaagcccaagtgggacaagacccagatcacctacagg 493
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27550896 cttcttcccccgcaagcccaagtgggacaagacccagatcacctacagg 27550848
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 943 agccctgttcaccatgggtggcaatgccgacggacagccctgcaagttcccgttccgctt 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27544498 agccctgttcaccatgggtggcaatgccgacggacagccctgcaagttcccgttccgctt 27544439
Query: 1003 ccagggcacatcctacaacagctgcaccacggagggccgtacagacggctaccgatggtg 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27544438 ccagggcacatcctacaacagctgcaccacggagggccgtacagacggctaccgatggtg 27544379
Query: 1063 cggcaccaccgaggactacgaccgcgacaagaagtacggcttctgccctgagactg 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27544378 cggcaccaccgaggactacgaccgcgacaagaagtacggcttctgccctgagactg 27544323
Score = 341 bits (172), Expect = 6e-91
Identities = 175/176 (99%)
Strand = Plus / Minus
Query: 769 agtggtgcgtgtgaagtatggaaacgccgacggggagtattgcaagttccccttctcctt 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27547848 agtggtgcgtgtgaagtatggaaacgccgacggggagtattgcaagttccccttctcctt 27547789
Query: 829 caacggcaaggagtataacagctgcaccgacacaggccgcagcgatggcttcctctggtg 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 27547788 caacggcaaggagtataacagctgcaccgacacaggccgcagcgatggcttcctttggtg 27547729
Query: 889 ttccaccacctacaacttcgacaaggatggcaagtacggcttctgcccccacgaag 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27547728 ttccaccacctacaacttcgacaaggatggcaagtacggcttctgcccccacgaag 27547673
Score = 331 bits (167), Expect = 6e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 1118 gccatgtccactgtgggcgggaactcggaaggtgccccctgcgtcttccccttcaccttc 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27543516 gccatgtccactgtgggcgggaactcggaaggtgccccctgcgtcttccccttcaccttc 27543457
Query: 1178 ctgggcaacaagcacgagagctgcaccagcgccggccgcagtgatggcaagttgtggtgc 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27543456 ctgggcaacaagcacgagagctgcaccagcgccggccgcagtgatggcaagttgtggtgc 27543397
Query: 1238 gcgaccaccgccaactacgatgatgaccgcaagtggggcttctgccc 1284
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27543396 gcgaccaccgccaactacgatgatgaccgcaagtggggcttctgccc 27543350
Score = 301 bits (152), Expect = 5e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 490 caggatcattggctacacgcctgatctggaccccgaaacggtggatgatgccttcgctcg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27550007 caggatcattggctacacgcctgatctggaccccgaaacggtggatgatgccttcgctcg 27549948
Query: 550 ggccttccgcgtctggagtgacgtgaccccattacggttttcccggatccatgacggaga 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27549947 ggccttccgcgtctggagtgacgtgaccccattacggttttcccggatccatgacggaga 27549888
Query: 610 ggctgacatcatgatcaactttggccgctggg 641
||||||||||||||||||||||||||||||||
Sbjct: 27549887 ggctgacatcatgatcaactttggccgctggg 27549856
Score = 244 bits (123), Expect = 1e-61
Identities = 130/131 (99%), Gaps = 1/131 (0%)
Strand = Plus / Minus
Query: 641 gagcacggagatggatacccctttgatggcaaggacggg-ctcctggctcacgccttcgc 699
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 27548214 gagcacggagatggatacccctttgatggcaaggacggggctcctggctcacgccttcgc 27548155
Query: 700 cccgggccctggcgtcgggggagactcccactttgacgacgatgagctgtggaccctggg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27548154 cccgggccctggcgtcgggggagactcccactttgacgacgatgagctgtggaccctggg 27548095
Query: 760 agaaggacaag 770
|||||||||||
Sbjct: 27548094 agaaggacaag 27548084
Score = 206 bits (104), Expect = 2e-50
Identities = 119/124 (95%)
Strand = Plus / Minus
Query: 1 cgctcggagcgctgcgcggcgctgggggagcaggcgccagcccttttgcgacgcggccac 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 27553988 cgctcggagcgctgcgcggcgctgggggagcaggcgccagccaggcggcgacgcggccac 27553929
Query: 61 acgcagcgagccagccacccccgggcgacgcgcggggcccgggagcgcaatgaccgaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27553928 acgcagcgagccagccacccccgggcgacgcgcggggcccgggagcgcaatgaccgaggc 27553869
Query: 121 gcga 124
||||
Sbjct: 27553868 gcga 27553865
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 206 tcgcccatcatcaagtttcccggagatgtcgcccccaaaacggacaaagagttggctgtg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27553784 tcgcccatcatcaagtttcccggagatgtcgcccccaaaacggacaaagagttggctgtg 27553725
>Sscrofa_Chr17
|| Length = 69701581
Score = 73.8 bits (37), Expect = 2e-10
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 641 gagcacggagatggatacccctttgatggcaaggacgggctcctggctcacgccttc 697
|||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 53821648 gagcacggagatgggtatcccttcgatgggaaggacgggctcctggcacacgccttc 53821704
Score = 63.9 bits (32), Expect = 2e-07
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 1024 ctgcaccacggagggccgtacagacggctaccgatggtgcggcaccaccgaggactacga 1083
||||||||| || ||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct: 53822325 ctgcaccaccgacggccgctcagacggctaccgctggtgcggcaccaccgccaactacga 53822384
Query: 1084 ccgcgacaagaagtacggcttctgccct 1111
|| |||||| || ||||||||||||
Sbjct: 53822385 ccaggacaagctttatggcttctgccct 53822412
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,522,428
Number of extensions: 99
Number of successful extensions: 99
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 10
Length of query: 1284
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1263
Effective length of database: 2,808,413,156
Effective search space: 3547025816028
Effective search space used: 3547025816028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)