Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004532
(1084 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092482.1| superkiller viralicidic activity 2-like 2 [B... 512 e-145
Alignment gi|NP_001192505.1| probable ATP-dependent DNA helicase HFM1 [Bo... 64 2e-10
Alignment gi|XP_002686302.1| PREDICTED: mutagen-sensitive 308-like [Bos t... 64 2e-10
Alignment gi|NP_001193092.1| U5 small nuclear ribonucleoprotein 200 kDa h... 57 2e-08
Alignment gi|XP_002691179.1| PREDICTED: activating signal cointegrator 1 ... 57 2e-08
>ref|NP_001092482.1| superkiller viralicidic activity 2-like 2 [Bos taurus].
Length = 1040
Score = 512 bits (1318), Expect = e-145
Identities = 265/297 (89%), Positives = 270/297 (90%)
Frame = +1
Query: 193 MADAFGDELFSVFEDDSTTAPGTXXXXXXXXXXXXXPPGSAEKAGKHFDGKLQTESTNIG 372
MADAFGDELFSVFEDDSTTAPG PPGSAEKAG+ FDGKLQ+ESTN+G
Sbjct: 1 MADAFGDELFSVFEDDSTTAPGAKKDKEKGKWKG--PPGSAEKAGRCFDGKLQSESTNVG 58
Query: 373 KTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 552
K KRDADFEG DEPIFGKK RVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
Sbjct: 59 KNKRDADFEGADEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 118
Query: 553 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 732
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
Sbjct: 119 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 178
Query: 733 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 912
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
Sbjct: 179 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 238
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWIC 1083
EVMREVAWVIFDEI YMRDS+ GVV EETIIL P V Y+FLSATIPNA FAEWIC
Sbjct: 239 EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIC 295
>ref|NP_001192505.1| probable ATP-dependent DNA helicase HFM1 [Bos taurus].
Length = 1437
Score = 63.9 bits (154), Expect = 2e-10
Identities = 70/286 (24%), Positives = 121/286 (42%), Gaps = 39/286 (13%)
Frame = +1
Query: 340 GKLQTESTNIGKTKRDADFEGTDEPIFGK-------KLRVEESITEDLSLADLMPRVKVQ 498
G ++ T + K K D +P + I E + A L P
Sbjct: 190 GSVKIVQTEVNKGKSWKDSNSKQKPQYSDCNILTATDTLFASEIREGIIKAPLFP--VAS 247
Query: 499 SVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAH 678
TV+G T E +L + + + + KE+P+ + + +++ ++ A
Sbjct: 248 QPHTVQGVT-EKSLDSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAP 306
Query: 679 TSAGKTVCAEYAIALALREKQ------RVIFTSPIKALSNQKYREMYEEFQDVGL----M 828
T +GKTV E AI L E ++++ +PIKAL +Q++ + ++F +GL +
Sbjct: 307 TGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKKKFGPIGLNCKEL 366
Query: 829 TGDVTINPT-----ASCLVMTTEILRSML--YRGSEVMREVAWVIFDEIPYMRDSQPGVV 987
TGD ++ A ++ T E SM +R + ++ V + DE+ ++D G
Sbjct: 367 TGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVHLVRLFLIDEVHVVKDENRGPT 426
Query: 988 CEETI-------ILPP------*YVPYLF--LSATIPNAPPFAEWI 1080
E + IL P +P F +SATIPNA AEW+
Sbjct: 427 LEVVVSRMKTVQILSPAVENTNSIIPMRFVAVSATIPNAEDIAEWL 472
>ref|XP_002686302.1| PREDICTED: mutagen-sensitive 308-like [Bos taurus].
Length = 1437
Score = 63.9 bits (154), Expect = 2e-10
Identities = 70/286 (24%), Positives = 121/286 (42%), Gaps = 39/286 (13%)
Frame = +1
Query: 340 GKLQTESTNIGKTKRDADFEGTDEPIFGK-------KLRVEESITEDLSLADLMPRVKVQ 498
G ++ T + K K D +P + I E + A L P
Sbjct: 190 GSVKIVQTEVNKGKSWKDSNSKQKPQYSDCNILTATDTLFASEIREGIIKAPLFP--VAS 247
Query: 499 SVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAH 678
TV+G T E +L + + + + KE+P+ + + +++ ++ A
Sbjct: 248 QPHTVQGVT-EKSLDSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAP 306
Query: 679 TSAGKTVCAEYAIALALREKQ------RVIFTSPIKALSNQKYREMYEEFQDVGL----M 828
T +GKTV E AI L E ++++ +PIKAL +Q++ + ++F +GL +
Sbjct: 307 TGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKKKFGPIGLNCKEL 366
Query: 829 TGDVTINPT-----ASCLVMTTEILRSML--YRGSEVMREVAWVIFDEIPYMRDSQPGVV 987
TGD ++ A ++ T E SM +R + ++ V + DE+ ++D G
Sbjct: 367 TGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVHLVRLFLIDEVHVVKDENRGPT 426
Query: 988 CEETI-------ILPP------*YVPYLF--LSATIPNAPPFAEWI 1080
E + IL P +P F +SATIPNA AEW+
Sbjct: 427 LEVVVSRMKTVQILSPAVENTNSIIPMRFVAVSATIPNAEDIAEWL 472
>ref|NP_001193092.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Bos taurus].
Length = 2136
Score = 57.4 bits (137), Expect = 2e-08
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Frame = +1
Query: 595 EYPFILDAFQREAIQCVDNNQ-SVLVSAHTSAGKTVCAEYAIALALREKQ--RVIFTSPI 765
++PF + Q + V N+ +V V A T +GKT+CAE+AI L + R ++ +P+
Sbjct: 1324 KFPFF-NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPM 1382
Query: 766 KALSNQKYREMYEEFQD-----VGLMTG----DVTINPTASCLVMTTE--ILRSMLYRGS 912
+AL+ Q Y + YE+FQD V L+TG D+ + S +V T E + S ++
Sbjct: 1383 EALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWKQR 1442
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCE---------ETIILPP*YVPYLFLSATIPNAPP 1065
+ ++ + + DE+ ++ + G V E + I P + + LS+++ NA
Sbjct: 1443 KNVQNINLFVVDEV-HLIGGENGPVLEVICSRMRYISSQIERP--IRIVALSSSLSNAKD 1499
Query: 1066 FAEWI 1080
A W+
Sbjct: 1500 VAHWL 1504
>ref|XP_002691179.1| PREDICTED: activating signal cointegrator 1 complex subunit 3-like
1-like [Bos taurus].
Length = 2136
Score = 57.4 bits (137), Expect = 2e-08
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Frame = +1
Query: 595 EYPFILDAFQREAIQCVDNNQ-SVLVSAHTSAGKTVCAEYAIALALREKQ--RVIFTSPI 765
++PF + Q + V N+ +V V A T +GKT+CAE+AI L + R ++ +P+
Sbjct: 1324 KFPFF-NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPM 1382
Query: 766 KALSNQKYREMYEEFQD-----VGLMTG----DVTINPTASCLVMTTE--ILRSMLYRGS 912
+AL+ Q Y + YE+FQD V L+TG D+ + S +V T E + S ++
Sbjct: 1383 EALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWKQR 1442
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCE---------ETIILPP*YVPYLFLSATIPNAPP 1065
+ ++ + + DE+ ++ + G V E + I P + + LS+++ NA
Sbjct: 1443 KNVQNINLFVVDEV-HLIGGENGPVLEVICSRMRYISSQIERP--IRIVALSSSLSNAKD 1499
Query: 1066 FAEWI 1080
A W+
Sbjct: 1500 VAHWL 1504
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,780,743
Number of extensions: 772677
Number of successful extensions: 2087
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2071
Number of HSP's successfully gapped: 5
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004532
(1084 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849676.1| PREDICTED: similar to Superkiller viralicidic a... 520 e-147
Alignment gi|XP_859381.1| PREDICTED: similar to Superkiller viralicidic a... 520 e-147
Alignment gi|XP_859345.1| PREDICTED: similar to superkiller viralicidic a... 520 e-147
Alignment gi|XP_538841.2| PREDICTED: similar to superkiller viralicidic a... 196 2e-50
Alignment gi|XP_532716.2| PREDICTED: similar to C28H8.3 [Canis familiaris]. 74 2e-13
Alignment gi|XP_537081.2| PREDICTED: similar to CG5205-PA [Canis familiar... 63 4e-10
Alignment gi|XP_864316.1| PREDICTED: similar to activating signal cointeg... 56 7e-08
Alignment gi|XP_864297.1| PREDICTED: similar to activating signal cointeg... 56 7e-08
Alignment gi|XP_864276.1| PREDICTED: similar to activating signal cointeg... 56 7e-08
Alignment gi|XP_864252.1| PREDICTED: similar to activating signal cointeg... 56 7e-08
>ref|XP_849676.1| PREDICTED: similar to Superkiller viralicidic activity 2-like 2
isoform 1 [Canis familiaris].
Length = 1042
Score = 520 bits (1339), Expect = e-147
Identities = 268/297 (90%), Positives = 271/297 (91%)
Frame = +1
Query: 193 MADAFGDELFSVFEDDSTTAPGTXXXXXXXXXXXXXPPGSAEKAGKHFDGKLQTESTNIG 372
MADAFGDELFSVFEDDSTTA GT PPGSAEK GK FDGKLQ+ESTNIG
Sbjct: 1 MADAFGDELFSVFEDDSTTASGTKKDKEKDKGKWKGPPGSAEKGGKRFDGKLQSESTNIG 60
Query: 373 KTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 552
KTKRDADFEGTDEPIFGKK RVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
Sbjct: 61 KTKRDADFEGTDEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 120
Query: 553 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 732
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
Sbjct: 121 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 180
Query: 733 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 912
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
Sbjct: 181 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 240
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWIC 1083
EVMREVAWVIFDEI YMRDS+ GVV EETIIL P V Y+FLSATIPNA FAEWIC
Sbjct: 241 EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIC 297
>ref|XP_859381.1| PREDICTED: similar to Superkiller viralicidic activity 2-like 2
isoform 3 [Canis familiaris].
Length = 842
Score = 520 bits (1339), Expect = e-147
Identities = 268/297 (90%), Positives = 271/297 (91%)
Frame = +1
Query: 193 MADAFGDELFSVFEDDSTTAPGTXXXXXXXXXXXXXPPGSAEKAGKHFDGKLQTESTNIG 372
MADAFGDELFSVFEDDSTTA GT PPGSAEK GK FDGKLQ+ESTNIG
Sbjct: 1 MADAFGDELFSVFEDDSTTASGTKKDKEKDKGKWKGPPGSAEKGGKRFDGKLQSESTNIG 60
Query: 373 KTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 552
KTKRDADFEGTDEPIFGKK RVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
Sbjct: 61 KTKRDADFEGTDEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 120
Query: 553 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 732
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
Sbjct: 121 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 180
Query: 733 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 912
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
Sbjct: 181 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 240
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWIC 1083
EVMREVAWVIFDEI YMRDS+ GVV EETIIL P V Y+FLSATIPNA FAEWIC
Sbjct: 241 EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIC 297
>ref|XP_859345.1| PREDICTED: similar to superkiller viralicidic activity 2-like 2
isoform 2 [Canis familiaris].
Length = 370
Score = 520 bits (1339), Expect = e-147
Identities = 268/297 (90%), Positives = 271/297 (91%)
Frame = +1
Query: 193 MADAFGDELFSVFEDDSTTAPGTXXXXXXXXXXXXXPPGSAEKAGKHFDGKLQTESTNIG 372
MADAFGDELFSVFEDDSTTA GT PPGSAEK GK FDGKLQ+ESTNIG
Sbjct: 1 MADAFGDELFSVFEDDSTTASGTKKDKEKDKGKWKGPPGSAEKGGKRFDGKLQSESTNIG 60
Query: 373 KTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 552
KTKRDADFEGTDEPIFGKK RVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
Sbjct: 61 KTKRDADFEGTDEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 120
Query: 553 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 732
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
Sbjct: 121 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 180
Query: 733 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 912
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
Sbjct: 181 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 240
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWIC 1083
EVMREVAWVIFDEI YMRDS+ GVV EETIIL P V Y+FLSATIPNA FAEWIC
Sbjct: 241 EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIC 297
>ref|XP_538841.2| PREDICTED: similar to superkiller viralicidic activity 2-like homolog
[Canis familiaris].
Length = 1246
Score = 196 bits (499), Expect = 2e-50
Identities = 97/168 (57%), Positives = 129/168 (76%)
Frame = +1
Query: 577 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 756
+ + A ++ F D FQ++AI ++ + SV V+AHTSAGKTV AEYAIALA + R I+T
Sbjct: 300 IPQPAFQWSFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 757 SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW 936
SPIKALSNQK+R+ F DVGL+TGDV ++P ASCL+MTTEILRSMLY GS+V+R++ W
Sbjct: 360 SPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEW 419
Query: 937 VIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWI 1080
VIFDE+ Y+ D++ GVV EE +I+ P +V + LSAT+PNA FA+WI
Sbjct: 420 VIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWI 467
>ref|XP_532716.2| PREDICTED: similar to C28H8.3 [Canis familiaris].
Length = 1708
Score = 74.3 bits (181), Expect = 2e-13
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 15/174 (8%)
Frame = +1
Query: 604 FILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR--VIFTSPIKALS 777
FI D +QRE + VDNN+S ++ A TS+GKT + Y + L+E V++ +P KAL
Sbjct: 758 FIPDTWQRELLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTKALV 817
Query: 778 NQKYREMYEEFQD--------VGLMTGDVTINPTASCLVMTT-----EILRSMLYRGSEV 918
NQ ++ F G+ T D + +C V+ T EIL +R + V
Sbjct: 818 NQVAATVHNRFTKSLPNGEALCGVFTRDYR-HDALNCQVLITVPACFEILLLSPHRQAWV 876
Query: 919 MREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWI 1080
R + +VIFDE+ + V E +++ P+L LSATI N EW+
Sbjct: 877 KR-IRYVIFDEVHCLGGEIGAEVWEHLLVMI--RCPFLALSATISNPEHLTEWL 927
>ref|XP_537081.2| PREDICTED: similar to CG5205-PA [Canis familiaris].
Length = 1567
Score = 63.2 bits (152), Expect = 4e-10
Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 31/194 (15%)
Frame = +1
Query: 592 KEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQ------RVIF 753
KE+P+ + + +++ ++ A T +GKTV E AI L E ++++
Sbjct: 530 KEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVY 589
Query: 754 TSPIKALSNQKYREMYEEFQDVGL----MTGDVTINPT-----ASCLVMTTEILRSML-- 900
+PIKAL +Q++ + E+F +GL +TGD ++ A ++ T E SM
Sbjct: 590 MAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRK 649
Query: 901 YRGSEVMREVAWVIFDEIPYMRDSQPGVVCEETI--------ILPP----*YVPYLF--L 1038
+R + +++ V + DE+ ++D G E + + PP +P F +
Sbjct: 650 WRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQSLSPPSENSTVIPMRFVAV 709
Query: 1039 SATIPNAPPFAEWI 1080
SATIPNA AEW+
Sbjct: 710 SATIPNAEDIAEWL 723
>ref|XP_864316.1| PREDICTED: similar to activating signal cointegrator 1 complex
subunit 3-like 1 isoform 12 [Canis familiaris].
Length = 2140
Score = 55.8 bits (133), Expect = 7e-08
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Frame = +1
Query: 595 EYPFILDAFQREAIQCVDNNQ-SVLVSAHTSAGKTVCAEYAIALALREKQ--RVIFTSPI 765
++PF + Q + V N+ +V V A T +GKT+CAE+AI L + R ++ +P+
Sbjct: 1328 KFPFF-NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPM 1386
Query: 766 KALSNQKYREMYEEFQD-----VGLMTG----DVTINPTASCLVMTTE--ILRSMLYRGS 912
+AL+ Q Y + YE+FQD V L+TG D+ + + ++ T E + S ++
Sbjct: 1387 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQR 1446
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCE---------ETIILPP*YVPYLFLSATIPNAPP 1065
+ ++ + + DE+ ++ + G V E + I P + + LS+++ NA
Sbjct: 1447 KNVQNINLFVVDEV-HLIGGENGPVLEVICSRMRYISSQIERP--IRIVALSSSLSNAKD 1503
Query: 1066 FAEWI 1080
A W+
Sbjct: 1504 VAHWL 1508
>ref|XP_864297.1| PREDICTED: similar to activating signal cointegrator 1 complex
subunit 3-like 1 isoform 11 [Canis familiaris].
Length = 2148
Score = 55.8 bits (133), Expect = 7e-08
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Frame = +1
Query: 595 EYPFILDAFQREAIQCVDNNQ-SVLVSAHTSAGKTVCAEYAIALALREKQ--RVIFTSPI 765
++PF + Q + V N+ +V V A T +GKT+CAE+AI L + R ++ +P+
Sbjct: 1336 KFPFF-NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPM 1394
Query: 766 KALSNQKYREMYEEFQD-----VGLMTG----DVTINPTASCLVMTTE--ILRSMLYRGS 912
+AL+ Q Y + YE+FQD V L+TG D+ + + ++ T E + S ++
Sbjct: 1395 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQR 1454
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCE---------ETIILPP*YVPYLFLSATIPNAPP 1065
+ ++ + + DE+ ++ + G V E + I P + + LS+++ NA
Sbjct: 1455 KNVQNINLFVVDEV-HLIGGENGPVLEVICSRMRYISSQIERP--IRIVALSSSLSNAKD 1511
Query: 1066 FAEWI 1080
A W+
Sbjct: 1512 VAHWL 1516
>ref|XP_864276.1| PREDICTED: similar to activating signal cointegrator 1 complex
subunit 3-like 1 isoform 10 [Canis familiaris].
Length = 2117
Score = 55.8 bits (133), Expect = 7e-08
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Frame = +1
Query: 595 EYPFILDAFQREAIQCVDNNQ-SVLVSAHTSAGKTVCAEYAIALALREKQ--RVIFTSPI 765
++PF + Q + V N+ +V V A T +GKT+CAE+AI L + R ++ +P+
Sbjct: 1305 KFPFF-NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPM 1363
Query: 766 KALSNQKYREMYEEFQD-----VGLMTG----DVTINPTASCLVMTTE--ILRSMLYRGS 912
+AL+ Q Y + YE+FQD V L+TG D+ + + ++ T E + S ++
Sbjct: 1364 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQR 1423
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCE---------ETIILPP*YVPYLFLSATIPNAPP 1065
+ ++ + + DE+ ++ + G V E + I P + + LS+++ NA
Sbjct: 1424 KNVQNINLFVVDEV-HLIGGENGPVLEVICSRMRYISSQIERP--IRIVALSSSLSNAKD 1480
Query: 1066 FAEWI 1080
A W+
Sbjct: 1481 VAHWL 1485
>ref|XP_864252.1| PREDICTED: similar to activating signal cointegrator 1 complex
subunit 3-like 1 isoform 9 [Canis familiaris].
Length = 2138
Score = 55.8 bits (133), Expect = 7e-08
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Frame = +1
Query: 595 EYPFILDAFQREAIQCVDNNQ-SVLVSAHTSAGKTVCAEYAIALALREKQ--RVIFTSPI 765
++PF + Q + V N+ +V V A T +GKT+CAE+AI L + R ++ +P+
Sbjct: 1326 KFPFF-NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPM 1384
Query: 766 KALSNQKYREMYEEFQD-----VGLMTG----DVTINPTASCLVMTTE--ILRSMLYRGS 912
+AL+ Q Y + YE+FQD V L+TG D+ + + ++ T E + S ++
Sbjct: 1385 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQR 1444
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCE---------ETIILPP*YVPYLFLSATIPNAPP 1065
+ ++ + + DE+ ++ + G V E + I P + + LS+++ NA
Sbjct: 1445 KNVQNINLFVVDEV-HLIGGENGPVLEVICSRMRYISSQIERP--IRIVALSSSLSNAKD 1501
Query: 1066 FAEWI 1080
A W+
Sbjct: 1502 VAHWL 1506
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,179,657
Number of extensions: 769627
Number of successful extensions: 2160
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2149
Number of HSP's successfully gapped: 15
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004532
(1084 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056175.3| superkiller viralicidic activity 2-like 2 [Homo... 509 e-144
Alignment gi|NP_008860.4| helicase SKI2W [Homo sapiens]. 198 8e-51
Alignment gi|NP_060101.3| probable ATP-dependent RNA helicase DDX60 [Homo... 69 6e-12
Alignment gi|NP_001012985.1| probable ATP-dependent RNA helicase DDX60-li... 64 2e-10
Alignment gi|NP_001017975.3| probable ATP-dependent DNA helicase HFM1 [Ho... 61 2e-09
Alignment gi|NP_054733.2| U5 small nuclear ribonucleoprotein 200 kDa heli... 56 7e-08
>ref|NP_056175.3| superkiller viralicidic activity 2-like 2 [Homo sapiens].
Length = 1042
Score = 509 bits (1312), Expect = e-144
Identities = 262/297 (88%), Positives = 268/297 (90%)
Frame = +1
Query: 193 MADAFGDELFSVFEDDSTTAPGTXXXXXXXXXXXXXPPGSAEKAGKHFDGKLQTESTNIG 372
MADAFGDELFSVFE DSTTA GT PPGSA+KAGK FDGKLQ+ESTN G
Sbjct: 1 MADAFGDELFSVFEGDSTTAAGTKKDKEKDKGKWKGPPGSADKAGKRFDGKLQSESTNNG 60
Query: 373 KTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 552
K KRD DFEGTDEPIFGKK R+EESITEDLSLADLMPRVKVQSVETVEGCTHEVALPA+E
Sbjct: 61 KNKRDVDFEGTDEPIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPAEE 120
Query: 553 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 732
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
Sbjct: 121 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 180
Query: 733 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 912
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
Sbjct: 181 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 240
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWIC 1083
EVMREVAWVIFDEI YMRDS+ GVV EETIIL P V Y+FLSATIPNA FAEWIC
Sbjct: 241 EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIC 297
>ref|NP_008860.4| helicase SKI2W [Homo sapiens].
Length = 1246
Score = 198 bits (503), Expect = 8e-51
Identities = 110/215 (51%), Positives = 146/215 (67%), Gaps = 9/215 (4%)
Frame = +1
Query: 463 SLADLMPRVKVQSVETVEG----CTHEVALPADE-----DYLPLKPRVGKAAKEYPFILD 615
SL DL+ + +V T E + A+P D D+ L P+ A ++ F D
Sbjct: 256 SLEDLVLKEASTAVSTPEAPEPPSQEQWAIPVDATSPVGDFYRLIPQ---PAFQWAFEPD 312
Query: 616 AFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYRE 795
FQ++AI ++ + SV V+AHTSAGKTV AEYAIALA + R I+TSPIKALSNQK+R+
Sbjct: 313 VFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRD 372
Query: 796 MYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIPYMRDSQ 975
F DVGL+TGDV ++P ASCL+MTTEILRSMLY GS+V+R++ WVIFDE+ Y+ D +
Sbjct: 373 FRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVE 432
Query: 976 PGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWI 1080
GVV EE +I+ P +V + LSAT+PNA FA+WI
Sbjct: 433 RGVVWEEVLIMLPDHVSIILLSATVPNALEFADWI 467
>ref|NP_060101.3| probable ATP-dependent RNA helicase DDX60 [Homo sapiens].
Length = 1712
Score = 69.3 bits (168), Expect = 6e-12
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 15/174 (8%)
Frame = +1
Query: 604 FILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR--VIFTSPIKALS 777
FI D +QRE + VD N+S ++ A TS+GKT + Y + L+E V++ +P KAL
Sbjct: 762 FIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPTKALV 821
Query: 778 NQKYREMYEEFQDVGLMTGDVTI--------NPTASCLVMTT-----EILRSMLYRGSEV 918
NQ + F L +G+V + +C V+ T EIL +R + V
Sbjct: 822 NQVAATVQNRFTK-NLPSGEVLCGVFTREYRHDALNCQVLITVPACFEILLLAPHRQNWV 880
Query: 919 MREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWI 1080
+++ +VIFDE+ + + E +++ P+L LSATI N EW+
Sbjct: 881 -KKIRYVIFDEVHCLGGEIGAEIWEHLLVMI--RCPFLALSATISNPEHLTEWL 931
>ref|NP_001012985.1| probable ATP-dependent RNA helicase DDX60-like [Homo sapiens].
Length = 1706
Score = 64.3 bits (155), Expect = 2e-10
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Frame = +1
Query: 556 YLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALRE 735
YL R + + FI +A+Q+E + VD N+S ++ A TS+GKT + Y + LRE
Sbjct: 726 YLIRDERKDRDPRVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRE 785
Query: 736 KQ--RVIFTSPIKALSNQKYREMYEEFQDV--------GLMTGDVTINPTASCLVMTT-- 879
V++ +P K+L Q + F G T D N +C V+ T
Sbjct: 786 SDVGVVVYVAPAKSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHN-VLNCQVLITVP 844
Query: 880 ---EILRSMLYRGSEVMREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATI 1050
EIL +R V R + +VIFDE+ Y+ E +++ P+L LSATI
Sbjct: 845 ECFEILLLAPHRQKWVER-IRYVIFDEVHYLGREVGAKFWELLLVII--RCPFLVLSATI 901
Query: 1051 PNAPPFAEWI 1080
N +W+
Sbjct: 902 NNPNLLTKWL 911
>ref|NP_001017975.3| probable ATP-dependent DNA helicase HFM1 [Homo sapiens].
Length = 1435
Score = 61.2 bits (147), Expect = 2e-09
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Frame = +1
Query: 592 KEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQ------RVIF 753
KE+P+ + + +++ ++ A T +GKTV E AI L E ++++
Sbjct: 276 KEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVY 335
Query: 754 TSPIKALSNQKYREMYEEFQDVGL----MTGDVTINPT-----ASCLVMTTEILRSML-- 900
+PIKAL +Q++ + E+F +GL +TGD ++ A ++ T E SM
Sbjct: 336 MAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRK 395
Query: 901 YRGSEVMREVAWVIFDEIPYMRDSQPGVVCE-------------ETIILPP*YVPYLF-- 1035
+R + +++ V + DE+ ++D G E +T+ +P F
Sbjct: 396 WRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVA 455
Query: 1036 LSATIPNAPPFAEWI 1080
+SATIPNA AEW+
Sbjct: 456 VSATIPNAEDIAEWL 470
>ref|NP_054733.2| U5 small nuclear ribonucleoprotein 200 kDa helicase [Homo sapiens].
Length = 2136
Score = 55.8 bits (133), Expect = 7e-08
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Frame = +1
Query: 595 EYPFILDAFQREAIQCVDNNQ-SVLVSAHTSAGKTVCAEYAIALALREKQ--RVIFTSPI 765
++PF + Q + V N+ +V V A T +GKT+CAE+AI L + R ++ +P+
Sbjct: 1324 KFPFF-NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPM 1382
Query: 766 KALSNQKYREMYEEFQD-----VGLMTG----DVTINPTASCLVMTTE--ILRSMLYRGS 912
+AL+ Q Y + YE+FQD V L+TG D+ + + ++ T E + S ++
Sbjct: 1383 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQR 1442
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCE---------ETIILPP*YVPYLFLSATIPNAPP 1065
+ ++ + + DE+ ++ + G V E + I P + + LS+++ NA
Sbjct: 1443 KNVQNINLFVVDEV-HLIGGENGPVLEVICSRMRYISSQIERP--IRIVALSSSLSNAKD 1499
Query: 1066 FAEWI 1080
A W+
Sbjct: 1500 VAHWL 1504
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,587,610
Number of extensions: 762284
Number of successful extensions: 2096
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2091
Number of HSP's successfully gapped: 6
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004532
(1084 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082427.1| superkiller viralicidic activity 2-like 2 [Mus ... 489 e-138
Alignment gi|NP_067312.2| superkiller viralicidic activity 2-like [Mus mu... 196 2e-50
Alignment gi|NP_001074684.1| probable ATP-dependent RNA helicase DDX60 [M... 69 6e-12
Alignment gi|NP_808541.2| HFM1 protein [Mus musculus]. 64 2e-10
Alignment gi|NP_796188.2| U5 small nuclear ribonucleoprotein 200 kDa heli... 56 6e-08
>ref|NP_082427.1| superkiller viralicidic activity 2-like 2 [Mus musculus].
Length = 1040
Score = 489 bits (1260), Expect = e-138
Identities = 254/297 (85%), Positives = 263/297 (88%)
Frame = +1
Query: 193 MADAFGDELFSVFEDDSTTAPGTXXXXXXXXXXXXXPPGSAEKAGKHFDGKLQTESTNIG 372
MADAFGDELFSVFEDDST+A G PPGSA+KAGK D KLQ+ES + G
Sbjct: 1 MADAFGDELFSVFEDDSTSAAGAKKDKEKEKWKG--PPGSADKAGKRLDTKLQSESASGG 58
Query: 373 KTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 552
K KRD D EGTDEPIFGKK R+E+SI EDLSLADLMPRVKVQSVETVEGCTHEVALPADE
Sbjct: 59 KNKRDLDVEGTDEPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 118
Query: 553 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 732
DY+PLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
Sbjct: 119 DYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 178
Query: 733 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 912
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
Sbjct: 179 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 238
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWIC 1083
EVMREVAWVIFDEI YMRDS+ GVV EETIIL P V Y+FLSATIPNA FAEWIC
Sbjct: 239 EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIC 295
>ref|NP_067312.2| superkiller viralicidic activity 2-like [Mus musculus].
Length = 1244
Score = 196 bits (499), Expect = 2e-50
Identities = 97/168 (57%), Positives = 129/168 (76%)
Frame = +1
Query: 577 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 756
+ + A ++ F D FQ++AI ++ + SV V+AHTSAGKTV AEYAIALA + R I+T
Sbjct: 297 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 356
Query: 757 SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW 936
SPIKALSNQK+R+ F DVGL+TGDV ++P ASCL+MTTEILRSMLY GS+V+R++ W
Sbjct: 357 SPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEW 416
Query: 937 VIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWI 1080
VIFDE+ Y+ D++ GVV EE +I+ P +V + LSAT+PNA FA+WI
Sbjct: 417 VIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWI 464
>ref|NP_001074684.1| probable ATP-dependent RNA helicase DDX60 [Mus musculus].
Length = 1711
Score = 68.9 bits (167), Expect = 6e-12
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 15/190 (7%)
Frame = +1
Query: 556 YLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALRE 735
YL + R + FI D +QRE + VDN +S ++ A TS+GKT + Y + L+E
Sbjct: 745 YLIREERKDPDPRVQDFIPDTWQRELLDVVDNYESAVIVAPTSSGKTYASYYCMEKVLKE 804
Query: 736 KQR--VIFTSPIKALSNQ-----KYR---EMYEEFQDVGLMTGDVTINPTASCLVMTT-- 879
V++ +P KAL NQ +YR M G+ T D + +C V+ T
Sbjct: 805 SDEGVVVYVAPTKALVNQVAATVEYRYAKNMPAGESLCGVFTRDYR-HDALNCQVLITVP 863
Query: 880 ---EILRSMLYRGSEVMREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATI 1050
EIL +R + V R + +VIFDE+ + + E +++ P+L LSATI
Sbjct: 864 ACFEILLLAPHRQNWVKR-IRYVIFDEVHCLGGEIGAEIWEHLLVMI--RCPFLALSATI 920
Query: 1051 PNAPPFAEWI 1080
N EW+
Sbjct: 921 SNPQHLTEWL 930
>ref|NP_808541.2| HFM1 protein [Mus musculus].
Length = 1434
Score = 63.9 bits (154), Expect = 2e-10
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 31/194 (15%)
Frame = +1
Query: 592 KEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALRE------KQRVIF 753
KE+P+ + + +++ ++ A T +GKTV E AI L E ++++
Sbjct: 275 KEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNMKIVY 334
Query: 754 TSPIKALSNQKYREMYEEFQDVGL----MTGDVTINPT-----ASCLVMTTEILRSML-- 900
+PIKAL +Q++ + E+F VGL +TGD ++ A+ ++ T E S+
Sbjct: 335 MAPIKALCSQRFDDWKEKFGPVGLNCKELTGDTVMDDLFEIQHANIIITTPEKWDSVTRK 394
Query: 901 YRGSEVMREVAWVIFDEIPYMRDSQPGVVCEETI--------------ILPP*YVPYLFL 1038
+R + ++ V + DE+ ++D G E + P V ++ +
Sbjct: 395 WRDNSFIQLVRLFLIDEVHVIKDENRGPTLEVVVSRMKTVQSLSRDLESASPVPVRFVAV 454
Query: 1039 SATIPNAPPFAEWI 1080
SATIPNA AEW+
Sbjct: 455 SATIPNAEDIAEWL 468
>ref|NP_796188.2| U5 small nuclear ribonucleoprotein 200 kDa helicase [Mus musculus].
Length = 2136
Score = 55.8 bits (133), Expect = 6e-08
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Frame = +1
Query: 595 EYPFILDAFQREAIQCVDNNQ-SVLVSAHTSAGKTVCAEYAIALALREKQ--RVIFTSPI 765
++PF + Q + V N+ +V V A T +GKT+CAE+AI L + R ++ +P+
Sbjct: 1324 KFPFF-NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPM 1382
Query: 766 KALSNQKYREMYEEFQD-----VGLMTG----DVTINPTASCLVMTTE--ILRSMLYRGS 912
+AL+ Q Y + YE+FQD V L+TG D+ + + ++ T E + S ++
Sbjct: 1383 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQR 1442
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCE---------ETIILPP*YVPYLFLSATIPNAPP 1065
+ ++ + + DE+ ++ + G V E + I P + + LS+++ NA
Sbjct: 1443 KNVQNINLFVVDEV-HLIGGENGPVLEVICSRMRYISSQIERP--IRIVALSSSLSNAKD 1499
Query: 1066 FAEWI 1080
A W+
Sbjct: 1500 VAHWL 1504
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,627,838
Number of extensions: 652560
Number of successful extensions: 1791
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1783
Number of HSP's successfully gapped: 5
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004532
(1084 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134012.2| PREDICTED: superkiller viralicidic activity ... 532 e-151
Alignment gi|NP_001095287.1| helicase SKI2W [Sus scrofa]. 197 8e-51
Alignment gi|XP_001927668.2| PREDICTED: LOW QUALITY PROTEIN: probable ATP... 71 1e-12
Alignment gi|XP_001929039.1| PREDICTED: probable ATP-dependent DNA helica... 64 1e-10
Alignment gi|XP_003124891.2| PREDICTED: u5 small nuclear ribonucleoprotei... 55 7e-08
>ref|XP_003134012.2| PREDICTED: superkiller viralicidic activity 2-like 2 [Sus scrofa].
Length = 620
Score = 532 bits (1370), Expect = e-151
Identities = 273/297 (91%), Positives = 275/297 (92%)
Frame = +1
Query: 193 MADAFGDELFSVFEDDSTTAPGTXXXXXXXXXXXXXPPGSAEKAGKHFDGKLQTESTNIG 372
MADAFGDELFSVFEDDSTTAPGT PPGSAEKAGKHFDGKLQTESTNIG
Sbjct: 1 MADAFGDELFSVFEDDSTTAPGTKKDKEKEKGKWKGPPGSAEKAGKHFDGKLQTESTNIG 60
Query: 373 KTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 552
KTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
Sbjct: 61 KTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE 120
Query: 553 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 732
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
Sbjct: 121 DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR 180
Query: 733 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 912
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
Sbjct: 181 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 240
Query: 913 EVMREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWIC 1083
EVMREVAWVIFDEI YMRDS+ GVV EETIIL P V Y+FLSATIPNA FAEWIC
Sbjct: 241 EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIC 297
>ref|NP_001095287.1| helicase SKI2W [Sus scrofa].
Length = 1246
Score = 197 bits (501), Expect = 8e-51
Identities = 104/189 (55%), Positives = 137/189 (72%), Gaps = 5/189 (2%)
Frame = +1
Query: 529 EVALPADE-----DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGK 693
E A+P D D+ L P+ A ++ F D FQ++AI ++ + SV V+AHTSAGK
Sbjct: 282 EWAIPVDVTSPVGDFYRLIPQ---PAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGK 338
Query: 694 TVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVM 873
TV AEYAIALA + R I+TSPIKALSNQK+R+ F DVGL+TGDV ++P ASCL+M
Sbjct: 339 TVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIM 398
Query: 874 TTEILRSMLYRGSEVMREVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIP 1053
TTEILRSMLY GS+V+R++ WVIFDE+ Y+ D++ GVV EE +I+ P +V + LSAT+P
Sbjct: 399 TTEILRSMLYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVP 458
Query: 1054 NAPPFAEWI 1080
NA FA+WI
Sbjct: 459 NALEFADWI 467
>ref|XP_001927668.2| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX60 [Sus scrofa].
Length = 1791
Score = 70.9 bits (172), Expect = 1e-12
Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Frame = +1
Query: 604 FILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR--VIFTSPIKALS 777
FI D +QRE + VD N+S ++ A TS+GKT + Y + LRE V++ +P KAL
Sbjct: 851 FIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMERVLREGDDGVVVYVAPTKALV 910
Query: 778 NQKYREMYEEFQD--------VGLMTGDVTINPTASCLVMTT----EILRSMLYRGSEVM 921
NQ + F+ G+ T D + S +++T EIL +R + V
Sbjct: 911 NQVAATVQNRFRKNLPDGEALCGVFTRDYRHDALNSQILITVPACFEILLLAPHRQAWVK 970
Query: 922 REVAWVIFDEIPYMRDSQPGVVCEETIILPP*YVPYLFLSATIPNAPPFAEWI 1080
R + +VIFDE+ + + E +++ P+L LSATI N EW+
Sbjct: 971 R-IRYVIFDEVHCLGGEIGAEIWEHLLVMI--RCPFLALSATISNPEHLTEWL 1020
>ref|XP_001929039.1| PREDICTED: probable ATP-dependent DNA helicase HFM1 [Sus scrofa].
Length = 1438
Score = 64.3 bits (155), Expect = 1e-10
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Frame = +1
Query: 592 KEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQ------RVIF 753
KE+P+ + + +++V+V A T +GKTV E AI L E ++++
Sbjct: 278 KEFPYFNYIQSKAFDDLLYTDRNVVVCAPTGSGKTVMFELAITRLLMEVPLPWSNIKIVY 337
Query: 754 TSPIKALSNQKYREMYEEFQDVGL----MTGDVTINPT-----ASCLVMTTEILRSML-- 900
+PIKAL +Q++ + E+F +GL +TGD ++ A ++ T E SM
Sbjct: 338 MAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRK 397
Query: 901 YRGSEVMREVAWVIFDEIPYMRDSQPGVVCE-------------ETIILPP*YVPYLF-- 1035
+R + +++ V + DE+ ++D G E + P +P F
Sbjct: 398 WRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQFLSHAVENPRNIIPMRFVA 457
Query: 1036 LSATIPNAPPFAEWI 1080
+SATIPNA AEW+
Sbjct: 458 VSATIPNAEDIAEWL 472
>ref|XP_003124891.2| PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Sus scrofa].
Length = 1469
Score = 55.1 bits (131), Expect = 7e-08
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Frame = +1
Query: 595 EYPFILDAFQREAIQCVDNNQ-SVLVSAHTSAGKTVCAEYAIALALREKQ--RVIFTSPI 765
++PF + Q + V N+ +V V A T +GKT+CAE+AI L + R ++ +P+
Sbjct: 477 KFPFF-NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPM 535
Query: 766 KALSNQKYREMYEEFQD-----VGLMTGDVT 843
+AL+ Q Y + YE+FQD V L+TG+ +
Sbjct: 536 EALAEQVYMDWYEKFQDRLNKKVVLLTGETS 566
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,942,430
Number of extensions: 534375
Number of successful extensions: 1299
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1294
Number of HSP's successfully gapped: 5
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004532
(1084 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 398 e-108
>Sscrofa_Chr16
|| Length = 86898991
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 62 ccttgagggctgtgcgactcaactaattttgtctcctacgggcccctgttgcggcttccc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36587067 ccttgagggctgtgcgactcaactaattttgtctcctacgggcccctgttgcggcttccc 36587126
Query: 122 ttggcgtcaccgtcggcgcggttgcggggcatcgtgggtaagagcgagatttggtctcac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36587127 ttggcgtcaccgtcggcgcggttgcggggcatcgtgggtaagagcgagatttggtctcac 36587186
Query: 182 aactccgaaagatggcggacgctttcggggatgagctcttcagcgtgtttgaggacgact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36587187 aactccgaaagatggcggacgctttcggggatgagctcttcagcgtgtttgaggacgact 36587246
Query: 242 cgaccactgcgcccggaacca 262
|||||||||||||||||||||
Sbjct: 36587247 cgaccactgcgcccggaacca 36587267
Score = 347 bits (175), Expect = 8e-93
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 708 atatgccattgcattggccttaagggaaaaacaacgtgtaatatttactagcccaattaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36617706 atatgccattgcattggccttaagggaaaaacaacgtgtaatatttactagcccaattaa 36617765
Query: 768 ggccctgagtaatcagaaatatcgtgaaatgtatgaagaatttcaagatgttggtctgat 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36617766 ggccctgagtaatcagaaatatcgtgaaatgtatgaagaatttcaagatgttggtctgat 36617825
Query: 828 gactggagatgttactattaatcctacagcatcttgtcttgttatgaccacagag 882
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36617826 gactggagatgttactattaatcctacagcatcttgtcttgttatgaccacagag 36617880
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 326 gaaaacattttgatggtaaattacaaacagagtcaactaatattggaaagaccaagagag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36595409 gaaaacattttgatggtaaattacaaacagagtcaactaatattggaaagaccaagagag 36595468
Query: 386 atgcagactttgagggcacagatgaacccatttttggaaagaagctcagggtagaagagt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36595469 atgcagactttgagggcacagatgaacccatttttggaaagaagctcagggtagaagagt 36595528
Query: 446 caataactgaagacttaag 464
|||||||||||||||||||
Sbjct: 36595529 caataactgaagacttaag 36595547
Score = 220 bits (111), Expect = 1e-54
Identities = 114/115 (99%)
Strand = Plus / Plus
Query: 593 aggaatacccattcattcttgacgcatttcaaagagaagccattcaatgtgtggacaata 652
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 36602094 aggaatacccattcattcttgacgcatttcaaagagaagccattcaatgtgttgacaata 36602153
Query: 653 atcagtctgttttagtatctgcacatacatcagcaggaaaaactgtatgcgctga 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36602154 atcagtctgttttagtatctgcacatacatcagcaggaaaaactgtatgcgctga 36602208
Score = 172 bits (87), Expect = 3e-40
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 881 agattttgagaagtatgctgtacagaggctctgaagttatgcgagaagttgcttgggtca 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36619420 agattttgagaagtatgctgtacagaggctctgaagttatgcgagaagttgcttgggtca 36619479
Query: 941 tatttgatgaaattccttacatgagagattc 971
||||||||||||||| |||||||||||||||
Sbjct: 36619480 tatttgatgaaattcattacatgagagattc 36619510
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 462 aagtttggcagatttgatgcctagagtcaaggtacaatcagttgaaactgttgaaggatg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36597679 aagtttggcagatttgatgcctagagtcaaggtacaatcagttgaaactgttgaaggatg 36597738
Query: 522 tacacatgaggt 533
||||||||||||
Sbjct: 36597739 tacacatgaggt 36597750
Score = 133 bits (67), Expect = 2e-28
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 525 acatgaggttgcacttcctgccgatgaagattatctaccacttaaaccaagagttggaaa 584
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36600909 acatcaggttgcacttcctgccgatgaagattatctaccacttaaaccaagagttggaaa 36600968
Query: 585 agctgcaaagg 595
|||||||||||
Sbjct: 36600969 agctgcaaagg 36600979
Score = 103 bits (52), Expect = 2e-19
Identities = 96/108 (88%), Gaps = 2/108 (1%)
Strand = Plus / Plus
Query: 978 tggtgttgtatgcgaagaaactattattttgcctccctgata-cgttccctacctctttc 1036
||||||||| || ||||||||||||||||||| ||| ||||| ||||| |||| ||||||
Sbjct: 36621057 tggtgttgtgtgggaagaaactattattttgcttcc-tgataacgttcactacgtctttc 36621115
Query: 1037 tttccgctaccattcccaatgccccaccgtttgctgaatggatttgcc 1084
|||| ||||| ||||| ||||||| || ||||||||||||||||||||
Sbjct: 36621116 tttcggctacaattccaaatgcccgacagtttgctgaatggatttgcc 36621163
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,156,626
Number of extensions: 146
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 8
Length of query: 1084
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1063
Effective length of database: 2,808,413,156
Effective search space: 2985343184828
Effective search space used: 2985343184828
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)