Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004551
(979 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013620.2| peroxisomal N(1)-acetyl-spermine/spermidine ... 437 e-123
Alignment gi|NP_001192368.1| spermine oxidase [Bos taurus]. 119 3e-27
Alignment gi|XP_002692427.1| PREDICTED: spermine oxidase [Bos taurus]. 119 3e-27
>ref|NP_001013620.2| peroxisomal N(1)-acetyl-spermine/spermidine oxidase precursor [Bos
taurus].
Length = 512
Score = 437 bits (1123), Expect = e-123
Identities = 223/305 (73%), Positives = 236/305 (77%)
Frame = +1
Query: 64 MESSGHQAEAXXXXXXXXXXXXXXXXXXXXQRLCCCSALPSLRVLEATARAGGRIRSERS 243
M+S G QAEA QRLC A LRVLEATARAGGRIRSE S
Sbjct: 1 MQSGGRQAEAPGRGPRVLVVGGGIAGLGAAQRLCRHPAFSHLRVLEATARAGGRIRSEHS 60
Query: 244 FGGVVEVGAHWIHGPSQSNPVFQLAARYGLLGEKELSEENQLVETGGHVGLPXXXXXXXX 423
FGGVVEVGAHWIHGPSQ NPVFQLAA+YGLLGEK LSEENQL+ETGGHVGLP
Sbjct: 61 FGGVVEVGAHWIHGPSQGNPVFQLAAKYGLLGEKALSEENQLIETGGHVGLPSVSYASSG 120
Query: 424 XXXXLELVAEMSSLFYSLIDQTREFLHSAEAPAPSVGEYLKKQIREHVASWAEGEGTKML 603
LELVAEM+SLFYSLIDQTREFL +AE PSVGEYLK++IR+H+A W E E TK L
Sbjct: 121 VSVSLELVAEMASLFYSLIDQTREFLQAAETTPPSVGEYLKEKIRQHMAGWTEDEETKKL 180
Query: 604 KLAILNNLFNVECCVSGTHSMDLVALAPFGEYTVLPGLDCTFPGGYQGLTDRMAASLPTD 783
KLAIL NLFNVECCVSGTHSMDLVALAPFGEYTVLPGLDCTFP GYQGLTD + ASLP D
Sbjct: 181 KLAILKNLFNVECCVSGTHSMDLVALAPFGEYTVLPGLDCTFPEGYQGLTDCIMASLPKD 240
Query: 784 VMVFDKPVKTIRWNGSFQEASAPGEAFPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDTF 963
VMVFDKPVKTI WNGSF+EASAPGE FP +DG CFPAHHV+VTVPLGF HLDTF
Sbjct: 241 VMVFDKPVKTIHWNGSFREASAPGETFPVLVECEDGDCFPAHHVVVTVPLGFFKKHLDTF 300
Query: 964 F*PPL 978
F PPL
Sbjct: 301 FEPPL 305
>ref|NP_001192368.1| spermine oxidase [Bos taurus].
Length = 555
Score = 119 bits (299), Expect = 3e-27
Identities = 90/303 (29%), Positives = 136/303 (44%), Gaps = 41/303 (13%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++R GGR++S + E+GA WIHG S NP++ LA GLL GE+ +
Sbjct: 53 VLEASSRIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGCRIPK-----DVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + + E TK LKLA++ VE C S +HSMD V+L+ FGE+T
Sbjct: 167 SVGVFTREEVRNRIRDDPDDPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP---------- 852
+PG P G+ + + +A +P V+ KPV+ + W+ + P
Sbjct: 227 EIPGAHHVIPSGFMRVVELLAEGIPAHVIQLGKPVRCVHWDQASSRPRGPEIEPRDEGDH 286
Query: 853 ---------------------GEAFPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF* 969
E +P +D PA HV+VTV LG +FF
Sbjct: 287 NHDAGEGSQGGEEPREERQDEDEQWPVVVECEDCEVIPADHVIVTVSLGVLKRQHASFFR 346
Query: 970 PPL 978
P L
Sbjct: 347 PGL 349
>ref|XP_002692427.1| PREDICTED: spermine oxidase [Bos taurus].
Length = 555
Score = 119 bits (299), Expect = 3e-27
Identities = 90/303 (29%), Positives = 136/303 (44%), Gaps = 41/303 (13%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++R GGR++S + E+GA WIHG S NP++ LA GLL GE+ +
Sbjct: 53 VLEASSRIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGCRIPK-----DVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + + E TK LKLA++ VE C S +HSMD V+L+ FGE+T
Sbjct: 167 SVGVFTREEVRNRIRDDPDDPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP---------- 852
+PG P G+ + + +A +P V+ KPV+ + W+ + P
Sbjct: 227 EIPGAHHVIPSGFMRVVELLAEGIPAHVIQLGKPVRCVHWDQASSRPRGPEIEPRDEGDH 286
Query: 853 ---------------------GEAFPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF* 969
E +P +D PA HV+VTV LG +FF
Sbjct: 287 NHDAGEGSQGGEEPREERQDEDEQWPVVVECEDCEVIPADHVIVTVSLGVLKRQHASFFR 346
Query: 970 PPL 978
P L
Sbjct: 347 PGL 349
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,764,563
Number of extensions: 1789433
Number of successful extensions: 11027
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10600
Number of HSP's successfully gapped: 5
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004551
(979 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860548.1| PREDICTED: similar to polyamine oxidase isoform... 129 4e-30
Alignment gi|XP_542910.2| PREDICTED: similar to polyamine oxidase isoform... 119 4e-27
Alignment gi|XP_860417.1| PREDICTED: similar to polyamine oxidase isoform... 119 4e-27
Alignment gi|XP_860489.1| PREDICTED: similar to polyamine oxidase isoform... 77 2e-14
>ref|XP_860548.1| PREDICTED: similar to polyamine oxidase isoform 1 isoform 6 [Canis
familiaris].
Length = 518
Score = 129 bits (324), Expect = 4e-30
Identities = 90/272 (33%), Positives = 135/272 (49%), Gaps = 10/272 (3%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S + E+GA WIHG S NP++ LA GLL GE+ +
Sbjct: 53 VLEASSCIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGRRIPK-----DVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + E E TK LKLA++ VE C S +HSMD V+L+ FGE+T
Sbjct: 167 SVGVFTREEVRNRIRDDPEDPEATKCLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAPGEAFPCWWSV 882
+PG P G+ + + +A +PT V+ KPV+ + W+ A + +P
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPTHVIQLGKPVRCVHWD------QASDKQWPVLVEC 280
Query: 883 KDGGCFPAHHVLVTVPLGFP*GHLDTFF*PPL 978
+D PA HV+VTV LG +FF P L
Sbjct: 281 EDCEVIPADHVIVTVSLGVLKRQYTSFFRPGL 312
>ref|XP_542910.2| PREDICTED: similar to polyamine oxidase isoform 1 isoform 1 [Canis
familiaris].
Length = 585
Score = 119 bits (298), Expect = 4e-27
Identities = 92/303 (30%), Positives = 137/303 (45%), Gaps = 41/303 (13%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S + E+GA WIHG S NP++ LA GLL GE+ +
Sbjct: 53 VLEASSCIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGRRIPK-----DVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + E E TK LKLA++ VE C S +HSMD V+L+ FGE+T
Sbjct: 167 SVGVFTREEVRNRIRDDPEDPEATKCLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP-----GEA-- 861
+PG P G+ + + +A +PT V+ KPV+ + W+ + P GE
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPTHVIQLGKPVRCVHWDQASARPRGPEIEPRGEGDH 286
Query: 862 ------------------------FPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF* 969
+P +D PA HV+VTV LG +FF
Sbjct: 287 NHDAGEGDQGGEEPRGDGRDEDKQWPVLVECEDCEVIPADHVIVTVSLGVLKRQYTSFFR 346
Query: 970 PPL 978
P L
Sbjct: 347 PGL 349
>ref|XP_860417.1| PREDICTED: similar to polyamine oxidase isoform 1 isoform 3 [Canis
familiaris].
Length = 555
Score = 119 bits (298), Expect = 4e-27
Identities = 92/303 (30%), Positives = 137/303 (45%), Gaps = 41/303 (13%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S + E+GA WIHG S NP++ LA GLL GE+ +
Sbjct: 53 VLEASSCIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGRRIPK-----DVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + E E TK LKLA++ VE C S +HSMD V+L+ FGE+T
Sbjct: 167 SVGVFTREEVRNRIRDDPEDPEATKCLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP-----GEA-- 861
+PG P G+ + + +A +PT V+ KPV+ + W+ + P GE
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPTHVIQLGKPVRCVHWDQASARPRGPEIEPRGEGDH 286
Query: 862 ------------------------FPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF* 969
+P +D PA HV+VTV LG +FF
Sbjct: 287 NHDAGEGDQGGEEPRGDGRDEDKQWPVLVECEDCEVIPADHVIVTVSLGVLKRQYTSFFR 346
Query: 970 PPL 978
P L
Sbjct: 347 PGL 349
>ref|XP_860489.1| PREDICTED: similar to polyamine oxidase isoform 2 isoform 5 [Canis
familiaris].
Length = 479
Score = 77.0 bits (188), Expect = 2e-14
Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 10/174 (5%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S + E+GA WIHG S NP++ LA GLL GE+ +
Sbjct: 53 VLEASSCIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGRRIPK-----DVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALA 684
VG + ++++R + E E TK LKLA++ VE C S +HSMD V+L+
Sbjct: 167 SVGVFTREEVRNRIRDDPEDPEATKCLKLAMIQQYLKVESCESSSHSMDEVSLS 220
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,870,773
Number of extensions: 1850032
Number of successful extensions: 11796
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11239
Number of HSP's successfully gapped: 6
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004551
(979 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_997011.1| polyamine oxidase isoform 4 [Homo sapiens]. 419 e-117
Alignment gi|NP_690875.1| polyamine oxidase isoform 1 [Homo sapiens]. 419 e-117
Alignment gi|NP_997010.1| polyamine oxidase isoform 2 [Homo sapiens]. 401 e-112
Alignment gi|NP_787033.1| spermine oxidase isoform 1 [Homo sapiens]. 118 9e-27
Alignment gi|NP_787036.1| spermine oxidase isoform 4 [Homo sapiens]. 113 2e-25
Alignment gi|NP_787034.1| spermine oxidase isoform 2 [Homo sapiens]. 113 2e-25
>ref|NP_997011.1| polyamine oxidase isoform 4 [Homo sapiens].
Length = 486
Score = 419 bits (1077), Expect = e-117
Identities = 207/275 (75%), Positives = 226/275 (82%)
Frame = +1
Query: 154 QRLCCCSALPSLRVLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGL 333
QRLC SA P LRVLEATARAGGRIRSER FGGVVEVGAHWIHGPS+ NPVFQLAA YGL
Sbjct: 30 QRLCGHSAFPHLRVLEATARAGGRIRSERCFGGVVEVGAHWIHGPSRGNPVFQLAAEYGL 89
Query: 334 LGEKELSEENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFLHSAE 513
LGEKELS+ENQLVETGGHVGLP L+LVAEM++LFY LIDQTREFLH+AE
Sbjct: 90 LGEKELSQENQLVETGGHVGLPSVSYASSGASVSLQLVAEMATLFYGLIDQTREFLHAAE 149
Query: 514 APAPSVGEYLKKQIREHVASWAEGEGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFG 693
P PSVGEYLKK+I +HVA W E E T+ LKLA+LN+ FN+ECCVSGTHSMDLVALAPFG
Sbjct: 150 TPVPSVGEYLKKEIGQHVAGWTEDEETRKLKLAVLNSFFNLECCVSGTHSMDLVALAPFG 209
Query: 694 EYTVLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAPGEAFPCW 873
EYTVLPGLDCTF GYQGLT+ M A+LP D +VF+KPVKTI WNGSFQEA+ PGE FP
Sbjct: 210 EYTVLPGLDCTFSKGYQGLTNCMMAALPEDTVVFEKPVKTIHWNGSFQEAAFPGETFPVS 269
Query: 874 WSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF*PPL 978
+DG FPAHHV+VTVPLGF HLDTFF PPL
Sbjct: 270 VECEDGDRFPAHHVIVTVPLGFLREHLDTFFDPPL 304
>ref|NP_690875.1| polyamine oxidase isoform 1 [Homo sapiens].
Length = 511
Score = 419 bits (1077), Expect = e-117
Identities = 207/275 (75%), Positives = 226/275 (82%)
Frame = +1
Query: 154 QRLCCCSALPSLRVLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGL 333
QRLC SA P LRVLEATARAGGRIRSER FGGVVEVGAHWIHGPS+ NPVFQLAA YGL
Sbjct: 30 QRLCGHSAFPHLRVLEATARAGGRIRSERCFGGVVEVGAHWIHGPSRGNPVFQLAAEYGL 89
Query: 334 LGEKELSEENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFLHSAE 513
LGEKELS+ENQLVETGGHVGLP L+LVAEM++LFY LIDQTREFLH+AE
Sbjct: 90 LGEKELSQENQLVETGGHVGLPSVSYASSGASVSLQLVAEMATLFYGLIDQTREFLHAAE 149
Query: 514 APAPSVGEYLKKQIREHVASWAEGEGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFG 693
P PSVGEYLKK+I +HVA W E E T+ LKLA+LN+ FN+ECCVSGTHSMDLVALAPFG
Sbjct: 150 TPVPSVGEYLKKEIGQHVAGWTEDEETRKLKLAVLNSFFNLECCVSGTHSMDLVALAPFG 209
Query: 694 EYTVLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAPGEAFPCW 873
EYTVLPGLDCTF GYQGLT+ M A+LP D +VF+KPVKTI WNGSFQEA+ PGE FP
Sbjct: 210 EYTVLPGLDCTFSKGYQGLTNCMMAALPEDTVVFEKPVKTIHWNGSFQEAAFPGETFPVS 269
Query: 874 WSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF*PPL 978
+DG FPAHHV+VTVPLGF HLDTFF PPL
Sbjct: 270 VECEDGDRFPAHHVIVTVPLGFLREHLDTFFDPPL 304
>ref|NP_997010.1| polyamine oxidase isoform 2 [Homo sapiens].
Length = 325
Score = 401 bits (1031), Expect = e-112
Identities = 197/261 (75%), Positives = 216/261 (82%)
Frame = +1
Query: 154 QRLCCCSALPSLRVLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGL 333
QRLC SA P LRVLEATARAGGRIRSER FGGVVEVGAHWIHGPS+ NPVFQLAA YGL
Sbjct: 30 QRLCGHSAFPHLRVLEATARAGGRIRSERCFGGVVEVGAHWIHGPSRGNPVFQLAAEYGL 89
Query: 334 LGEKELSEENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFLHSAE 513
LGEKELS+ENQLVETGGHVGLP L+LVAEM++LFY LIDQTREFLH+AE
Sbjct: 90 LGEKELSQENQLVETGGHVGLPSVSYASSGASVSLQLVAEMATLFYGLIDQTREFLHAAE 149
Query: 514 APAPSVGEYLKKQIREHVASWAEGEGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFG 693
P PSVGEYLKK+I +HVA W E E T+ LKLA+LN+ FN+ECCVSGTHSMDLVALAPFG
Sbjct: 150 TPVPSVGEYLKKEIGQHVAGWTEDEETRKLKLAVLNSFFNLECCVSGTHSMDLVALAPFG 209
Query: 694 EYTVLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAPGEAFPCW 873
EYTVLPGLDCTF GYQGLT+ M A+LP D +VF+KPVKTI WNGSFQEA+ PGE FP
Sbjct: 210 EYTVLPGLDCTFSKGYQGLTNCMMAALPEDTVVFEKPVKTIHWNGSFQEAAFPGETFPVS 269
Query: 874 WSVKDGGCFPAHHVLVTVPLG 936
+DG FPAHHV+VTVPLG
Sbjct: 270 VECEDGDRFPAHHVIVTVPLG 290
>ref|NP_787033.1| spermine oxidase isoform 1 [Homo sapiens].
Length = 555
Score = 118 bits (295), Expect = 9e-27
Identities = 94/303 (31%), Positives = 139/303 (45%), Gaps = 41/303 (13%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S + E+GA WIHG S NP++ LA GLL GE+ +
Sbjct: 53 VLEASSHIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNHGRRIPK-----DVVEEFSDLYNEVYNLTQEFFRHDKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + + + E TK LKLA++ VE C S +HSMD V+L+ FGE+T
Sbjct: 167 SVGVFTREEVRNRIRNDPDDPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP---------- 852
+PG P G+ + + +A +P V+ KPV+ I W+ + P
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPAHVIQLGKPVRCIHWDQASARPRGPEIEPRGEGDH 286
Query: 853 ----GEAFP--------CW-----WSV----KDGGCFPAHHVLVTVPLGFP*GHLDTFF* 969
GE W WSV +D PA HV+VTV LG +FF
Sbjct: 287 NHDTGEGGQGGEEPRGGRWDEDEQWSVVVECEDCELIPADHVIVTVSLGVLKRQYTSFFR 346
Query: 970 PPL 978
P L
Sbjct: 347 PGL 349
>ref|NP_787036.1| spermine oxidase isoform 4 [Homo sapiens].
Length = 532
Score = 113 bits (283), Expect = 2e-25
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 10/230 (4%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S + E+GA WIHG S NP++ LA GLL GE+ +
Sbjct: 53 VLEASSHIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNHGRRIPK-----DVVEEFSDLYNEVYNLTQEFFRHDKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + + + E TK LKLA++ VE C S +HSMD V+L+ FGE+T
Sbjct: 167 SVGVFTREEVRNRIRNDPDDPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP 852
+PG P G+ + + +A +P V+ KPV+ I W+ + P
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPAHVIQLGKPVRCIHWDQASARPRGP 276
>ref|NP_787034.1| spermine oxidase isoform 2 [Homo sapiens].
Length = 502
Score = 113 bits (283), Expect = 2e-25
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 10/230 (4%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S + E+GA WIHG S NP++ LA GLL GE+ +
Sbjct: 53 VLEASSHIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNHGRRIPK-----DVVEEFSDLYNEVYNLTQEFFRHDKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + + + E TK LKLA++ VE C S +HSMD V+L+ FGE+T
Sbjct: 167 SVGVFTREEVRNRIRNDPDDPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP 852
+PG P G+ + + +A +P V+ KPV+ I W+ + P
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPAHVIQLGKPVRCIHWDQASARPRGP 276
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,590,607
Number of extensions: 1774372
Number of successful extensions: 10390
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9901
Number of HSP's successfully gapped: 7
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004551
(979 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_722478.2| peroxisomal N(1)-acetyl-spermine/spermidine oxi... 388 e-108
Alignment gi|XP_003084500.1| PREDICTED: peroxisomal N(1)-acetyl-spermine/... 348 4e-96
Alignment gi|XP_003086201.1| PREDICTED: peroxisomal N(1)-acetyl-spermine/... 348 4e-96
Alignment gi|NP_001171306.1| spermine oxidase isoform d [Mus musculus]. 119 4e-27
Alignment gi|NP_001171305.1| spermine oxidase isoform c [Mus musculus]. 119 4e-27
Alignment gi|NP_001171304.1| spermine oxidase isoform a [Mus musculus]. 119 4e-27
Alignment gi|NP_663508.1| spermine oxidase isoform b [Mus musculus]. 119 4e-27
Alignment gi|NP_001171307.1| spermine oxidase isoform e [Mus musculus]. 114 1e-25
Alignment gi|NP_001171310.1| spermine oxidase isoform h [Mus musculus]. 61 1e-09
Alignment gi|NP_001171309.1| spermine oxidase isoform g [Mus musculus]. 61 1e-09
>ref|NP_722478.2| peroxisomal N(1)-acetyl-spermine/spermidine oxidase [Mus musculus].
Length = 504
Score = 388 bits (997), Expect = e-108
Identities = 194/276 (70%), Positives = 214/276 (77%), Gaps = 1/276 (0%)
Frame = +1
Query: 154 QRLCCCSALPSLRVLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGL 333
Q+LC A P LRVLEATA AGGRIRSER FGGVVE+GAHWIHGPSQ NPVFQLAA +GL
Sbjct: 22 QKLCSHRAAPHLRVLEATASAGGRIRSERCFGGVVELGAHWIHGPSQDNPVFQLAAEFGL 81
Query: 334 LGEKELSEENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFLHSAE 513
LGEKELSEENQLV+TGGHV LP LEL+ EM+ LFY LI++TREFL+ +E
Sbjct: 82 LGEKELSEENQLVDTGGHVALPSMIWSSSGTSVSLELMTEMARLFYGLIERTREFLNESE 141
Query: 514 APAPSVGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPF 690
P SVGE+LKK+I + VASW E E T+ KLAILN FN+ECCVSGTHSMDLVALAPF
Sbjct: 142 TPMASVGEFLKKEISQQVASWTEDDEDTRKRKLAILNTFFNIECCVSGTHSMDLVALAPF 201
Query: 691 GEYTVLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAPGEAFPC 870
GEYTVLPGLDC GGYQGLTDR+ ASLP D + FDKPVKTI WNGSFQEA+ PGE FP
Sbjct: 202 GEYTVLPGLDCILAGGYQGLTDRILASLPKDTVAFDKPVKTIHWNGSFQEAAFPGETFPV 261
Query: 871 WWSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF*PPL 978
+DG PAHHV+VTVPLGF H DTFF PPL
Sbjct: 262 LVECEDGARLPAHHVIVTVPLGFLKEHQDTFFEPPL 297
>ref|XP_003084500.1| PREDICTED: peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like
[Mus musculus].
Length = 470
Score = 348 bits (893), Expect = 4e-96
Identities = 175/255 (68%), Positives = 194/255 (76%), Gaps = 1/255 (0%)
Frame = +1
Query: 217 GGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLLGEKELSEENQLVETGGHVGL 396
GG ER GGVVE+GAHWIHGPSQ NPVFQLAA +GLLGEKELSEENQLV+TGGHV L
Sbjct: 11 GGLRSGER--GGVVELGAHWIHGPSQDNPVFQLAAEFGLLGEKELSEENQLVDTGGHVAL 68
Query: 397 PXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFLHSAEAPAPSVGEYLKKQIREHVASW 576
P LEL+ EM+ LFY LI++TREFL+ +E P SVGE+LKK+I + VASW
Sbjct: 69 PSMIWSSSGTSVSLELMTEMARLFYGLIERTREFLNESETPMASVGEFLKKEISQQVASW 128
Query: 577 AEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYTVLPGLDCTFPGGYQGLT 753
E E T+ KLAILN FN+ECCVSGTHSMDLVALAPFGEYTVLPGLDC GGYQGLT
Sbjct: 129 TEDDEDTRKRKLAILNTFFNIECCVSGTHSMDLVALAPFGEYTVLPGLDCILAGGYQGLT 188
Query: 754 DRMAASLPTDVMVFDKPVKTIRWNGSFQEASAPGEAFPCWWSVKDGGCFPAHHVLVTVPL 933
DR+ ASLP D + FDKPVKTI WNGSFQEA+ PGE FP +DG PAHHV+VTVPL
Sbjct: 189 DRILASLPKDTVAFDKPVKTIHWNGSFQEAAFPGETFPVLVECEDGARLPAHHVIVTVPL 248
Query: 934 GFP*GHLDTFF*PPL 978
GF H DTFF PPL
Sbjct: 249 GFLKEHQDTFFEPPL 263
>ref|XP_003086201.1| PREDICTED: peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like
[Mus musculus].
Length = 470
Score = 348 bits (893), Expect = 4e-96
Identities = 175/255 (68%), Positives = 194/255 (76%), Gaps = 1/255 (0%)
Frame = +1
Query: 217 GGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLLGEKELSEENQLVETGGHVGL 396
GG ER GGVVE+GAHWIHGPSQ NPVFQLAA +GLLGEKELSEENQLV+TGGHV L
Sbjct: 11 GGLRSGER--GGVVELGAHWIHGPSQDNPVFQLAAEFGLLGEKELSEENQLVDTGGHVAL 68
Query: 397 PXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFLHSAEAPAPSVGEYLKKQIREHVASW 576
P LEL+ EM+ LFY LI++TREFL+ +E P SVGE+LKK+I + VASW
Sbjct: 69 PSMIWSSSGTSVSLELMTEMARLFYGLIERTREFLNESETPMASVGEFLKKEISQQVASW 128
Query: 577 AEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYTVLPGLDCTFPGGYQGLT 753
E E T+ KLAILN FN+ECCVSGTHSMDLVALAPFGEYTVLPGLDC GGYQGLT
Sbjct: 129 TEDDEDTRKRKLAILNTFFNIECCVSGTHSMDLVALAPFGEYTVLPGLDCILAGGYQGLT 188
Query: 754 DRMAASLPTDVMVFDKPVKTIRWNGSFQEASAPGEAFPCWWSVKDGGCFPAHHVLVTVPL 933
DR+ ASLP D + FDKPVKTI WNGSFQEA+ PGE FP +DG PAHHV+VTVPL
Sbjct: 189 DRILASLPKDTVAFDKPVKTIHWNGSFQEAAFPGETFPVLVECEDGARLPAHHVIVTVPL 248
Query: 934 GFP*GHLDTFF*PPL 978
GF H DTFF PPL
Sbjct: 249 GFLKEHQDTFFEPPL 263
>ref|NP_001171306.1| spermine oxidase isoform d [Mus musculus].
Length = 512
Score = 119 bits (298), Expect = 4e-27
Identities = 91/303 (30%), Positives = 136/303 (44%), Gaps = 41/303 (13%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S R E+GA WIHG S NP++QLA GLL GE+ +
Sbjct: 53 VLEASSHIGGRVQSVRLGDTTFELGATWIHG-SHGNPIYQLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGCRIPK-----DVVEEFSDLYNEVYNMTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + + E TK LKLA++ VE C S +HS+D V+L+ FGE+T
Sbjct: 167 SVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKVESCESSSHSIDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP---------- 852
+PG P G+ + + +A +P V+ KPV+ I W+ + P
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPPHVIQLGKPVRCIHWDQASAHPRGPEIEPRGEGDH 286
Query: 853 ---------------------GEAFPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF* 969
E +P +D PA HV+VTV LG +FF
Sbjct: 287 NHDTGEGGQSGENPQQGRWDEDEPWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFR 346
Query: 970 PPL 978
P L
Sbjct: 347 PCL 349
>ref|NP_001171305.1| spermine oxidase isoform c [Mus musculus].
Length = 536
Score = 119 bits (298), Expect = 4e-27
Identities = 91/303 (30%), Positives = 136/303 (44%), Gaps = 41/303 (13%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S R E+GA WIHG S NP++QLA GLL GE+ +
Sbjct: 53 VLEASSHIGGRVQSVRLGDTTFELGATWIHG-SHGNPIYQLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGCRIPK-----DVVEEFSDLYNEVYNMTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + + E TK LKLA++ VE C S +HS+D V+L+ FGE+T
Sbjct: 167 SVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKVESCESSSHSIDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP---------- 852
+PG P G+ + + +A +P V+ KPV+ I W+ + P
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPPHVIQLGKPVRCIHWDQASAHPRGPEIEPRGEGDH 286
Query: 853 ---------------------GEAFPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF* 969
E +P +D PA HV+VTV LG +FF
Sbjct: 287 NHDTGEGGQSGENPQQGRWDEDEPWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFR 346
Query: 970 PPL 978
P L
Sbjct: 347 PCL 349
>ref|NP_001171304.1| spermine oxidase isoform a [Mus musculus].
Length = 585
Score = 119 bits (298), Expect = 4e-27
Identities = 91/303 (30%), Positives = 136/303 (44%), Gaps = 41/303 (13%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S R E+GA WIHG S NP++QLA GLL GE+ +
Sbjct: 53 VLEASSHIGGRVQSVRLGDTTFELGATWIHG-SHGNPIYQLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGCRIPK-----DVVEEFSDLYNEVYNMTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + + E TK LKLA++ VE C S +HS+D V+L+ FGE+T
Sbjct: 167 SVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKVESCESSSHSIDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP---------- 852
+PG P G+ + + +A +P V+ KPV+ I W+ + P
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPPHVIQLGKPVRCIHWDQASAHPRGPEIEPRGEGDH 286
Query: 853 ---------------------GEAFPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF* 969
E +P +D PA HV+VTV LG +FF
Sbjct: 287 NHDTGEGGQSGENPQQGRWDEDEPWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFR 346
Query: 970 PPL 978
P L
Sbjct: 347 PCL 349
>ref|NP_663508.1| spermine oxidase isoform b [Mus musculus].
Length = 555
Score = 119 bits (298), Expect = 4e-27
Identities = 91/303 (30%), Positives = 136/303 (44%), Gaps = 41/303 (13%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S R E+GA WIHG S NP++QLA GLL GE+ +
Sbjct: 53 VLEASSHIGGRVQSVRLGDTTFELGATWIHG-SHGNPIYQLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGCRIPK-----DVVEEFSDLYNEVYNMTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + + E TK LKLA++ VE C S +HS+D V+L+ FGE+T
Sbjct: 167 SVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKVESCESSSHSIDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP---------- 852
+PG P G+ + + +A +P V+ KPV+ I W+ + P
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPPHVIQLGKPVRCIHWDQASAHPRGPEIEPRGEGDH 286
Query: 853 ---------------------GEAFPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDTFF* 969
E +P +D PA HV+VTV LG +FF
Sbjct: 287 NHDTGEGGQSGENPQQGRWDEDEPWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFR 346
Query: 970 PPL 978
P L
Sbjct: 347 PCL 349
>ref|NP_001171307.1| spermine oxidase isoform e [Mus musculus].
Length = 419
Score = 114 bits (285), Expect = 1e-25
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 10/230 (4%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S R E+GA WIHG S NP++QLA GLL GE+ +
Sbjct: 53 VLEASSHIGGRVQSVRLGDTTFELGATWIHG-SHGNPIYQLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAPS-- 528
+ + G L ++V E S L+ + + T+EF H A S
Sbjct: 112 ISLYSKNGVACYLTNRGCRIPK-----DVVEEFSDLYNEVYNMTQEFFRHGKPVNAESQN 166
Query: 529 -VGEYLKKQIREHVASWAEG-EGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFGEYT 702
VG + ++++R + + E TK LKLA++ VE C S +HS+D V+L+ FGE+T
Sbjct: 167 SVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKVESCESSSHSIDEVSLSAFGEWT 226
Query: 703 VLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWNGSFQEASAP 852
+PG P G+ + + +A +P V+ KPV+ I W+ + P
Sbjct: 227 EIPGAHHIIPSGFMRVVELLAEGIPPHVIQLGKPVRCIHWDQASAHPRGP 276
>ref|NP_001171310.1| spermine oxidase isoform h [Mus musculus].
Length = 243
Score = 61.2 bits (147), Expect = 1e-09
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S R E+GA WIHG S NP++QLA GLL GE+ +
Sbjct: 53 VLEASSHIGGRVQSVRLGDTTFELGATWIHG-SHGNPIYQLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAP--- 525
+ + G L ++V E S L+ + + T+EF H A
Sbjct: 112 ISLYSKNGVACYLTNRGCRIPK-----DVVEEFSDLYNEVYNMTQEFFRHGKPVNAESQN 166
Query: 526 SVGEYLKKQIREHVASWAEG-EGTKMLKLAIL 618
SVG + ++++R + + E TK LKLA++
Sbjct: 167 SVGVFTREKVRNRIRDDPDDTEATKRLKLAMI 198
>ref|NP_001171309.1| spermine oxidase isoform g [Mus musculus].
Length = 248
Score = 61.2 bits (147), Expect = 1e-09
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Frame = +1
Query: 193 VLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKELSE 357
VLEA++ GGR++S R E+GA WIHG S NP++QLA GLL GE+ +
Sbjct: 53 VLEASSHIGGRVQSVRLGDTTFELGATWIHG-SHGNPIYQLAEANGLLEETTDGERSVGR 111
Query: 358 ENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAP--- 525
+ + G L ++V E S L+ + + T+EF H A
Sbjct: 112 ISLYSKNGVACYLTNRGCRIPK-----DVVEEFSDLYNEVYNMTQEFFRHGKPVNAESQN 166
Query: 526 SVGEYLKKQIREHVASWAEG-EGTKMLKLAIL 618
SVG + ++++R + + E TK LKLA++
Sbjct: 167 SVGVFTREKVRNRIRDDPDDTEATKRLKLAMI 198
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,383,446
Number of extensions: 1441185
Number of successful extensions: 7798
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 7414
Number of HSP's successfully gapped: 18
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004551
(979 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362048.1| PREDICTED: peroxisomal N(1)-acetyl-spermine/... 416 e-117
Alignment gi|NP_001172099.1| spermine oxidase [Sus scrofa]. 124 1e-28
>ref|XP_003362048.1| PREDICTED: peroxisomal N(1)-acetyl-spermine/spermidine
oxidase-like, partial [Sus scrofa].
Length = 399
Score = 416 bits (1070), Expect = e-117
Identities = 210/246 (85%), Positives = 212/246 (86%)
Frame = +1
Query: 241 SFGGVVEVGAHWIHGPSQSNPVFQLAARYGLLGEKELSEENQLVETGGHVGLPXXXXXXX 420
S GGVVEVGAHWIHGPSQSNPV YGLLGEKELSEENQLVETGGHVGLP
Sbjct: 20 SLGGVVEVGAHWIHGPSQSNPVXXXXXXYGLLGEKELSEENQLVETGGHVGLPSVTYTSS 79
Query: 421 XXXXXLELVAEMSSLFYSLIDQTREFLHSAEAPAPSVGEYLKKQIREHVASWAEGEGTKM 600
EMSSLFYSLIDQTREFLHSAEAPAPSVGEYLKKQIREHVASWAEGE
Sbjct: 80 GGXXXXXXXXEMSSLFYSLIDQTREFLHSAEAPAPSVGEYLKKQIREHVASWAEGEXXXX 139
Query: 601 LKLAILNNLFNVECCVSGTHSMDLVALAPFGEYTVLPGLDCTFPGGYQGLTDRMAASLPT 780
KLAILNNLFNVECCVSGTHSMDLVALAPFGEYTVLPGLDCTFPGGYQGLTDRMAASLPT
Sbjct: 140 XKLAILNNLFNVECCVSGTHSMDLVALAPFGEYTVLPGLDCTFPGGYQGLTDRMAASLPT 199
Query: 781 DVMVFDKPVKTIRWNGSFQEASAPGEAFPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDT 960
DVMVFDKPVKTIRWNGSFQEASAPGEAFP +DGGCFPAHHV+VTVPLGF GHLDT
Sbjct: 200 DVMVFDKPVKTIRWNGSFQEASAPGEAFPVLVECEDGGCFPAHHVIVTVPLGFLKGHLDT 259
Query: 961 FF*PPL 978
FF PPL
Sbjct: 260 FFEPPL 265
>ref|NP_001172099.1| spermine oxidase [Sus scrofa].
Length = 554
Score = 124 bits (310), Expect = 1e-28
Identities = 95/306 (31%), Positives = 140/306 (45%), Gaps = 41/306 (13%)
Frame = +1
Query: 184 SLRVLEATARAGGRIRSERSFGGVVEVGAHWIHGPSQSNPVFQLAARYGLL-----GEKE 348
++ VLEA++R GGR++S + E+GA WIHG S NP++ LA GLL GE+
Sbjct: 50 NVTVLEASSRIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETTDGERS 108
Query: 349 LSEENQLVETGGHVGLPXXXXXXXXXXXXLELVAEMSSLFYSLIDQTREFL-HSAEAPAP 525
+ + + G L ++V E S L+ + + T+EF H A
Sbjct: 109 VGRISLYSKNGVACYLTNHGRRIPK-----DVVEEFSDLYNEVYNLTQEFFRHGKPVNAE 163
Query: 526 S---VGEYLKKQIREHVASWA-EGEGTKMLKLAILNNLFNVECCVSGTHSMDLVALAPFG 693
S VG + ++++R + E E TK LKLA++ VE C S +HSMD V+L+ FG
Sbjct: 164 SQNSVGVFTREEVRNRIRDDPDEPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFG 223
Query: 694 EYTVLPGLDCTFPGGYQGLTDRMAASLPTDVMVFDKPVKTIRWN---------------- 825
E+T +PG P G+ + + +A +P V+ KPV+ + WN
Sbjct: 224 EWTEIPGAQHIIPSGFMRVVELLAEGIPAHVIQLGKPVRCVHWNQASACPRGPEIEPRGE 283
Query: 826 ---------GSFQEASAPG------EAFPCWWSVKDGGCFPAHHVLVTVPLGFP*GHLDT 960
GS PG E +P +D PA HV+VTV LG +
Sbjct: 284 GDHNHDAGEGSQGGEEPPGERQDEDEQWPVLVECEDCEVIPADHVIVTVSLGVLKRQHAS 343
Query: 961 FF*PPL 978
FF P L
Sbjct: 344 FFQPGL 349
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,656,759
Number of extensions: 1170310
Number of successful extensions: 7352
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7011
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004551
(979 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118992.1| Sus scrofa unplaced genomic scaffold ChrUScaf4126 365 3e-98
Sscrofa_Chr14 125 5e-26
>gb|JH118992.1| Sus scrofa unplaced genomic scaffold ChrUScaf4126
Length = 36609
Score = 365 bits (184), Expect = 3e-98
Identities = 201/204 (98%), Gaps = 2/204 (0%)
Strand = Plus / Minus
Query: 734 ggggctaccaaggactcacggaccgcatggcggcctccttgcccacggacgtgatggttt 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3429 ggggctaccaaggactcacggaccgcatggcggcctccttgcccacggacgtgatggttt 3370
Query: 794 tcgacaagcccgtgaagaccattcgctggaacgggtccttccaggaagcctctgctcctg 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3369 tcgacaagcccgtgaagaccattcgctggaacgggtccttccaggaagcctctgctcctg 3310
Query: 854 gggaggcgtttcc-gtgctggtggagtgtgaaggatggaggctgcttcccagcgcatcac 912
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3309 gggaggcgtttccagtgctggtggagtgtg-aggatggaggctgcttcccagcgcatcac 3251
Query: 913 gtcctcgtcactgtgcccttgggt 936
||| ||||||||||||||||||||
Sbjct: 3250 gtcatcgtcactgtgcccttgggt 3227
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 451 gagatgtccagtctgttctacagcctcatagaccagaccagggagttcctgcactcggcc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4582 gagatgtccagtctgttctacagcctcatagaccagaccagggagttcctgcactcggcc 4523
Query: 511 gaggccccggcgcccagcgttggggagtacctcaagaagcagatccgggagcacgtggcc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4522 gaggccccggcgcccagcgttggggagtacctcaagaagcagatccgggagcacgtggcc 4463
Query: 571 agctgggcagagggtgagg 589
|||||||||||||||||||
Sbjct: 4462 agctgggcagagggtgagg 4444
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 604 aagctggccatcctgaacaacctcttcaacgtggagtgctgtgtcagtggtacccacagc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4343 aagctggccatcctgaacaacctcttcaacgtggagtgctgtgtcagtggtacccacagc 4284
Query: 664 atggacctggtggccctcgcgccttttggagagtacacagtgctgcctgggctggactgc 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4283 atggacctggtggccctcgcgccttttggagagtacacagtgctgcctgggctggactgc 4224
Query: 724 acctttcctggg 735
||||||||||||
Sbjct: 4223 acctttcctggg 4212
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 325 tatgggctgctgggggagaaggagttgtccgaggagaaccagctggtggagaccgggggt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4786 tatgggctgctgggggagaaggagttgtccgaggagaaccagctggtggagaccgggggt 4727
Query: 385 cacgtgggcctgccctctgtgacctacaccagctccgggggaag 428
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4726 cacgtgggcctgccctctgtgacctacaccagctccgggggaag 4683
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 247 ggtggtgtggtggaggtaggtgctcactggatccatgggccctcccagagcaaccccgtc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4948 ggtggtgtggtggaggtaggtgctcactggatccatgggccctcccagagcaaccccgtc 4889
Query: 307 tt 308
||
Sbjct: 4888 tt 4887
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 144 gggagcggcgcagaggctctgctgctgctccgccttgccgtccctgcgggttctg 198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5630 gggagcggcgcagaggctctgctgctgctccgccttgccgtccctgcgggttctg 5576
>Sscrofa_Chr14
|| Length = 153851969
Score = 125 bits (63), Expect = 5e-26
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 1 gtcttccctactcccggcacgtcggagcggctgggcagcgcgggaactccccgggacggc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 153838878 gtcttccctgctcccggcacgtcggagcggctgggcagcgcgggaactccccgggnacgc 153838937
Query: 61 gcgatggagtcgagtggc 78
||||||||||||||||||
Sbjct: 153838938 gcgatggagtcgagtggc 153838955
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,124,390
Number of extensions: 2448
Number of successful extensions: 2448
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2447
Number of HSP's successfully gapped: 7
Length of query: 979
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 958
Effective length of database: 2,808,413,156
Effective search space: 2690459803448
Effective search space used: 2690459803448
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)