Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004555
(897 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074196.1| frataxin, mitochondrial precursor [Bos tauru... 346 2e-95
>ref|NP_001074196.1| frataxin, mitochondrial precursor [Bos taurus].
Length = 217
Score = 346 bits (887), Expect = 2e-95
Identities = 171/217 (78%), Positives = 182/217 (83%)
Frame = +2
Query: 14 MWTLGRRAAAGLLPRSGPRGSAQARAGAPRPTKDPQPYGCXXXXXXXXXXXXXNQSSVSL 193
MWTLGRR+ A LPRS G A RAGAPRP KD G +QSS+SL
Sbjct: 1 MWTLGRRSVASFLPRSALPGFAPTRAGAPRPAKDLSLSGLPGLRIGTAKAPARSQSSLSL 60
Query: 194 RCLNQILNVKKQSICLMNLRTTGTLGNAGSLDDTTYERLAEETLDSLAEFFEDLADKPFT 373
RCLNQ L+VKKQS+C +NLRT GTLG+AG+LDDTTYERLAEETLDSLAEFFEDLADKP+T
Sbjct: 61 RCLNQTLDVKKQSVCWINLRTAGTLGDAGTLDDTTYERLAEETLDSLAEFFEDLADKPYT 120
Query: 374 FEDYDVSFGSGVLTIKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGRNWVYSHDG 553
FEDYDVSFGSGVLT+KLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGRNWVYSHDG
Sbjct: 121 FEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGRNWVYSHDG 180
Query: 554 VSLHELLARELTTALKTKLDLSSLAYSGKGTCCPA*C 664
VSLHELLA ELT ALKTKLDLS+LAYSGK TCCPA C
Sbjct: 181 VSLHELLATELTQALKTKLDLSALAYSGKDTCCPAQC 217
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,117,552
Number of extensions: 973673
Number of successful extensions: 5590
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5510
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 197
Effective length of database: 14,306,398
Effective search space: 2818360406
Effective search space used: 2818360406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004555
(897 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103428.1| frataxin [Canis lupus familiaris]. 318 4e-87
>ref|NP_001103428.1| frataxin [Canis lupus familiaris].
Length = 211
Score = 318 bits (815), Expect = 4e-87
Identities = 158/211 (74%), Positives = 174/211 (82%)
Frame = +2
Query: 14 MWTLGRRAAAGLLPRSGPRGSAQARAGAPRPTKDPQPYGCXXXXXXXXXXXXXNQSSVSL 193
MWTLGRRAAAGLLPRS P GSA A AG PT+ +G + +++SL
Sbjct: 1 MWTLGRRAAAGLLPRSAPPGSAAAGAGTRGPTRAAPLHGGRGLRVGTGAARGPSHANLSL 60
Query: 194 RCLNQILNVKKQSICLMNLRTTGTLGNAGSLDDTTYERLAEETLDSLAEFFEDLADKPFT 373
LNQ++NVKKQS+CLMN+RT GT+ + GSLD+TTYERLAE TLDSLAEFFEDLADKP+T
Sbjct: 61 HHLNQLVNVKKQSVCLMNMRTVGTVSSPGSLDETTYERLAETTLDSLAEFFEDLADKPYT 120
Query: 374 FEDYDVSFGSGVLTIKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGRNWVYSHDG 553
EDYDVSFGSGVLT+KLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTG+NWVYSHDG
Sbjct: 121 LEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDG 180
Query: 554 VSLHELLARELTTALKTKLDLSSLAYSGKGT 646
VSLHELLA ELT A K KLDLSSLAYSGKGT
Sbjct: 181 VSLHELLATELTKAFKIKLDLSSLAYSGKGT 211
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,499,989
Number of extensions: 991729
Number of successful extensions: 6032
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5957
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 197
Effective length of database: 15,474,232
Effective search space: 3048423704
Effective search space used: 3048423704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004555
(897 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000135.2| frataxin, mitochondrial isoform 1 preproprotein... 300 2e-81
Alignment gi|NP_001155178.1| frataxin, mitochondrial isoform 3 preproprot... 207 1e-53
Alignment gi|NP_852090.1| frataxin, mitochondrial isoform 2 preproprotein... 207 1e-53
>ref|NP_000135.2| frataxin, mitochondrial isoform 1 preproprotein [Homo sapiens].
Length = 210
Score = 300 bits (767), Expect = 2e-81
Identities = 155/209 (74%), Positives = 166/209 (79%)
Frame = +2
Query: 14 MWTLGRRAAAGLLPRSGPRGSAQARAGAPRPTKDPQPYGCXXXXXXXXXXXXXNQSSVSL 193
MWTLGRRA AGLL P AQ PRP + G ++S +
Sbjct: 1 MWTLGRRAVAGLLASPSP-AQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQ 59
Query: 194 RCLNQILNVKKQSICLMNLRTTGTLGNAGSLDDTTYERLAEETLDSLAEFFEDLADKPFT 373
R LNQI NVKKQS+ LMNLR +GTLG+ GSLD+TTYERLAEETLDSLAEFFEDLADKP+T
Sbjct: 60 RGLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYT 119
Query: 374 FEDYDVSFGSGVLTIKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGRNWVYSHDG 553
FEDYDVSFGSGVLT+KLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTG+NWVYSHDG
Sbjct: 120 FEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDG 179
Query: 554 VSLHELLARELTTALKTKLDLSSLAYSGK 640
VSLHELLA ELT ALKTKLDLSSLAYSGK
Sbjct: 180 VSLHELLAAELTKALKTKLDLSSLAYSGK 208
>ref|NP_001155178.1| frataxin, mitochondrial isoform 3 preproprotein [Homo sapiens].
Length = 171
Score = 207 bits (527), Expect = 1e-53
Identities = 110/161 (68%), Positives = 120/161 (74%)
Frame = +2
Query: 14 MWTLGRRAAAGLLPRSGPRGSAQARAGAPRPTKDPQPYGCXXXXXXXXXXXXXNQSSVSL 193
MWTLGRRA AGLL P AQ PRP + G ++S +
Sbjct: 1 MWTLGRRAVAGLLASPSP-AQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQ 59
Query: 194 RCLNQILNVKKQSICLMNLRTTGTLGNAGSLDDTTYERLAEETLDSLAEFFEDLADKPFT 373
R LNQI NVKKQS+ LMNLR +GTLG+ GSLD+TTYERLAEETLDSLAEFFEDLADKP+T
Sbjct: 60 RGLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYT 119
Query: 374 FEDYDVSFGSGVLTIKLGGDLGTYVINKQTPNKQIWLSSPS 496
FEDYDVSFGSGVLT+KLGGDLGTYVINKQTPNKQIWLSSPS
Sbjct: 120 FEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPS 160
>ref|NP_852090.1| frataxin, mitochondrial isoform 2 preproprotein [Homo sapiens].
Length = 196
Score = 207 bits (527), Expect = 1e-53
Identities = 110/161 (68%), Positives = 120/161 (74%)
Frame = +2
Query: 14 MWTLGRRAAAGLLPRSGPRGSAQARAGAPRPTKDPQPYGCXXXXXXXXXXXXXNQSSVSL 193
MWTLGRRA AGLL P AQ PRP + G ++S +
Sbjct: 1 MWTLGRRAVAGLLASPSP-AQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQ 59
Query: 194 RCLNQILNVKKQSICLMNLRTTGTLGNAGSLDDTTYERLAEETLDSLAEFFEDLADKPFT 373
R LNQI NVKKQS+ LMNLR +GTLG+ GSLD+TTYERLAEETLDSLAEFFEDLADKP+T
Sbjct: 60 RGLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYT 119
Query: 374 FEDYDVSFGSGVLTIKLGGDLGTYVINKQTPNKQIWLSSPS 496
FEDYDVSFGSGVLT+KLGGDLGTYVINKQTPNKQIWLSSPS
Sbjct: 120 FEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPS 160
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,718,934
Number of extensions: 961307
Number of successful extensions: 5189
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5104
Number of HSP's successfully gapped: 3
Length of query: 299
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 197
Effective length of database: 14,934,836
Effective search space: 2942162692
Effective search space used: 2942162692
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004555
(897 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032070.1| frataxin, mitochondrial precursor [Mus musculus]. 284 7e-77
>ref|NP_032070.1| frataxin, mitochondrial precursor [Mus musculus].
Length = 207
Score = 284 bits (726), Expect = 7e-77
Identities = 149/211 (70%), Positives = 163/211 (77%)
Frame = +2
Query: 14 MWTLGRRAAAGLLPRSGPRGSAQARAGAPRPTKDPQPYGCXXXXXXXXXXXXXNQSSVSL 193
MW G RAA GLLPR+ R SA G PR ++P + ++L
Sbjct: 1 MWAFGGRAAVGLLPRTASRASAWV--GNPR-WREPIVTCGRRGLHVTVNAGATRHAHLNL 57
Query: 194 RCLNQILNVKKQSICLMNLRTTGTLGNAGSLDDTTYERLAEETLDSLAEFFEDLADKPFT 373
L QILN+KKQS+C+++LR GTL N SLD+T YERLAEETLDSLAEFFEDLADKP+T
Sbjct: 58 HYL-QILNIKKQSVCVVHLRNLGTLDNPSSLDETAYERLAEETLDSLAEFFEDLADKPYT 116
Query: 374 FEDYDVSFGSGVLTIKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGRNWVYSHDG 553
EDYDVSFG GVLTIKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTG+NWVYSHDG
Sbjct: 117 LEDYDVSFGDGVLTIKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDG 176
Query: 554 VSLHELLARELTTALKTKLDLSSLAYSGKGT 646
VSLHELLARELT AL TKLDLSSLAYSGKGT
Sbjct: 177 VSLHELLARELTKALNTKLDLSSLAYSGKGT 207
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,340,552
Number of extensions: 797357
Number of successful extensions: 3893
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3823
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 198
Effective length of database: 12,583,923
Effective search space: 2491616754
Effective search space used: 2491616754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004555
(897 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,220,423
Number of extensions: 657561
Number of successful extensions: 3507
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3458
Number of HSP's successfully gapped: 0
Length of query: 299
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 201
Effective length of database: 8,904,026
Effective search space: 1789709226
Effective search space used: 1789709226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004555
(897 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 644 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 644 bits (325), Expect = 0.0
Identities = 328/329 (99%)
Strand = Plus / Plus
Query: 496 cagtggccccaagcgctacgactggacggggaggaactgggtgtactcccacgacggtgt 555
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 248825661 cagtggccccaagcgctacgactggacggggacgaactgggtgtactcccacgacggtgt 248825720
Query: 556 gtccctccacgagctgctggccagggagctgacgacggccttaaaaaccaaactggactt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248825721 gtccctccacgagctgctggccagggagctgacgacggccttaaaaaccaaactggactt 248825780
Query: 616 atcttctctggcctactctgggaaaggcacttgctgcccagcctagtgctaaagacatta 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248825781 atcttctctggcctactctgggaaaggcacttgctgcccagcctagtgctaaagacatta 248825840
Query: 676 aaagctctacagccaagaccccagctttggccttcagccgaatggctagttttttccatt 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248825841 aaagctctacagccaagaccccagctttggccttcagccgaatggctagttttttccatt 248825900
Query: 736 cttgcctttgaggacagttatattgtgtgtagctgctctgtgaaaagactgtgtcgcctc 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248825901 cttgcctttgaggacagttatattgtgtgtagctgctctgtgaaaagactgtgtcgcctc 248825960
Query: 796 tcgccctgcccctgattaatttccataga 824
|||||||||||||||||||||||||||||
Sbjct: 248825961 tcgccctgcccctgattaatttccataga 248825989
Score = 335 bits (169), Expect = 2e-89
Identities = 178/181 (98%)
Strand = Plus / Plus
Query: 1 gatcgcgagggacatgtggacgctcgggcgccgagcggctgccggcctccttccccgctc 60
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 248680745 gatcgcgagggacatgtggacgctcggacgccgagcggctgccggcttccttccccgctc 248680804
Query: 61 cgggccccgaggctctgcccaggcccgcgccggggctccgcggccgacgaaagatcccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248680805 cgggccccgaggctctgcccaggcccgcgccggggctccgcggccgacgaaagatcccca 248680864
Query: 121 gccttatggctgccggggtctgcgcaccgggaccgccgcggcacgcgcacgcaaccagtc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 248680865 gccttatggctgccggggtctgcgcaccgggaccgccgcggcccgcgcacgcaaccagtc 248680924
Query: 181 g 181
|
Sbjct: 248680925 g 248680925
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 279 gctctctggatgataccacctatgaaaggctggccgaggagacgctggactccttagcag 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248812430 gctctctggatgataccacctatgaaaggctggccgaggagacgctggactccttagcag 248812489
Query: 339 agttttttgaagaccttgcagacaaacctttcacatttgaagactatgatgtctcctttg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248812490 agttttttgaagaccttgcagacaaacctttcacatttgaagactatgatgtctcctttg 248812549
Query: 399 gg 400
||
Sbjct: 248812550 gg 248812551
Score = 196 bits (99), Expect = 1e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 181 gagtgtgagcctccgctgcctcaaccagattctgaatgtcaaaaagcagagcatctgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248810471 gagtgtgagcctccgctgcctcaaccagattctgaatgtcaaaaagcagagcatctgttt 248810530
Query: 241 gatgaatttgaggacaacaggaactttgggcaatgctgg 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 248810531 gatgaatttgaggacaacaggaactttgggcaatgctgg 248810569
Score = 196 bits (99), Expect = 1e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 400 gagtggcgttttaaccattaaactgggtggagatctaggaacctacgtgatcaacaagca 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248821554 gagtggcgttttaaccattaaactgggtggagatctaggaacctacgtgatcaacaagca 248821613
Query: 460 gaccccaaacaagcaaatctggttatcttcaccatccag 498
|||||||||||||||||||||||||||||||||||||||
Sbjct: 248821614 gaccccaaacaagcaaatctggttatcttcaccatccag 248821652
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,842,222
Number of extensions: 111
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 5
Length of query: 897
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 876
Effective length of database: 2,808,413,156
Effective search space: 2460169924656
Effective search space used: 2460169924656
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)