Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004590
(850 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073759.1| lariat debranching enzyme [Bos taurus]. 407 e-114
Alignment gi|NP_001179014.1| CWF19-like protein 1 [Bos taurus]. 66 3e-11
Alignment gi|XP_002698473.1| PREDICTED: CWF19-like 1, cell cycle control ... 66 3e-11
>ref|NP_001073759.1| lariat debranching enzyme [Bos taurus].
Length = 517
Score = 407 bits (1046), Expect = e-114
Identities = 196/227 (86%), Positives = 199/227 (87%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
MRVAVAGCCHGELDKIYETLALAERRGPG IDLLLCCGDFQAVRNEADLRCMAVPPKYRH
Sbjct: 1 MRVAVAGCCHGELDKIYETLALAERRGPGRIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 60
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 506
MQTFYRYYSGEKKAPVLT+FIGGNHEASNHLQELPYGGWVAPNIYYL
Sbjct: 61 MQTFYRYYSGEKKAPVLTIFIGGNHEASNHLQELPYGGWVAPNIYYL------------- 107
Query: 507 GGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRSI 686
GHFECPPYNA+T+RSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRSI
Sbjct: 108 --------------GHFECPPYNAATVRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRSI 153
Query: 687 YHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL 827
YHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL
Sbjct: 154 YHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL 200
>ref|NP_001179014.1| CWF19-like protein 1 [Bos taurus].
Length = 539
Score = 66.2 bits (160), Expect = 3e-11
Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 2/227 (0%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
+R+ G G+ D ++ + +++ G DLLLC G+F +A+
Sbjct: 6 LRLLACGDVEGKFDALFNRVRAIQKKS-GNFDLLLCVGNFFGSTPDAE------------ 52
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNH-EASNHLQELPYGGWVAPNIYYLGLAGV-VKYRGV 500
+ Y +G KKAP+ T +G N+ E + Q++ G +A NI YLG GV G+
Sbjct: 53 ---WEEYKTGVKKAPIQTYVLGANNQETVKYFQDVD-GCELAENITYLGRKGVFTGSSGL 108
Query: 501 RIGGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPR 680
+I +SG ++ G + P + S++R++ + Q K +DI L+ WP+
Sbjct: 109 QIVYLSGTESLNEPVPG-YSFSPKDVSSLRTM-------LCSTPQFK-GVDILLTSPWPK 159
Query: 681 SIYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSA 821
+ ++GN EV+ GS S L LKP Y F++
Sbjct: 160 YVGNFGNSS----------GEVDTKKCGSALISSLATGLKPRYHFAS 196
>ref|XP_002698473.1| PREDICTED: CWF19-like 1, cell cycle control (S. pombe) [Bos
taurus].
Length = 539
Score = 66.2 bits (160), Expect = 3e-11
Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 2/227 (0%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
+R+ G G+ D ++ + +++ G DLLLC G+F +A+
Sbjct: 6 LRLLACGDVEGKFDALFNRVRAIQKKS-GNFDLLLCVGNFFGSTPDAE------------ 52
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNH-EASNHLQELPYGGWVAPNIYYLGLAGV-VKYRGV 500
+ Y +G KKAP+ T +G N+ E + Q++ G +A NI YLG GV G+
Sbjct: 53 ---WEEYKTGVKKAPIQTYVLGANNQETVKYFQDVD-GCELAENITYLGRKGVFTGSSGL 108
Query: 501 RIGGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPR 680
+I +SG ++ G + P + S++R++ + Q K +DI L+ WP+
Sbjct: 109 QIVYLSGTESLNEPVPG-YSFSPKDVSSLRTM-------LCSTPQFK-GVDILLTSPWPK 159
Query: 681 SIYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSA 821
+ ++GN EV+ GS S L LKP Y F++
Sbjct: 160 YVGNFGNSS----------GEVDTKKCGSALISSLATGLKPRYHFAS 196
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,678,541
Number of extensions: 902580
Number of successful extensions: 5640
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5510
Number of HSP's successfully gapped: 3
Length of query: 283
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 182
Effective length of database: 14,339,486
Effective search space: 2609786452
Effective search space used: 2609786452
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004590
(850 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852077.1| PREDICTED: similar to debranching enzyme homolo... 476 e-134
Alignment gi|XP_864978.1| PREDICTED: similar to debranching enzyme homolo... 469 e-132
Alignment gi|XP_534991.2| PREDICTED: similar to CWF19-like 1, cell cycle ... 68 9e-12
Alignment gi|XP_861616.1| PREDICTED: similar to CWF19-like 1, cell cycle ... 68 9e-12
Alignment gi|XP_861584.1| PREDICTED: similar to CWF19-like 1, cell cycle ... 68 9e-12
>ref|XP_852077.1| PREDICTED: similar to debranching enzyme homolog 1 isoform 2 [Canis
familiaris].
Length = 544
Score = 476 bits (1225), Expect = e-134
Identities = 223/227 (98%), Positives = 225/227 (99%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH
Sbjct: 1 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 60
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 506
MQTFYRYYSGEKKAPVLT+FIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI
Sbjct: 61 MQTFYRYYSGEKKAPVLTIFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 120
Query: 507 GGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRSI 686
GGISGIFKSHDYRKGHFECPPYN +TIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPR I
Sbjct: 121 GGISGIFKSHDYRKGHFECPPYNPATIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRGI 180
Query: 687 YHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL 827
YHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL
Sbjct: 181 YHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL 227
>ref|XP_864978.1| PREDICTED: similar to debranching enzyme homolog 1 isoform 3 [Canis
familiaris].
Length = 552
Score = 469 bits (1206), Expect = e-132
Identities = 223/235 (94%), Positives = 225/235 (95%), Gaps = 8/235 (3%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH
Sbjct: 1 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 60
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 506
MQTFYRYYSGEKKAPVLT+FIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI
Sbjct: 61 MQTFYRYYSGEKKAPVLTIFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 120
Query: 507 GGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQ--------LKQPMDIFL 662
GGISGIFKSHDYRKGHFECPPYN +TIRSIYHVRNIEVYKLKQ LKQPMDIFL
Sbjct: 121 GGISGIFKSHDYRKGHFECPPYNPATIRSIYHVRNIEVYKLKQVCKNNSTKLKQPMDIFL 180
Query: 663 SHDWPRSIYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL 827
SHDWPR IYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL
Sbjct: 181 SHDWPRGIYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL 235
>ref|XP_534991.2| PREDICTED: similar to CWF19-like 1, cell cycle control isoform 1
[Canis familiaris].
Length = 537
Score = 68.2 bits (165), Expect = 9e-12
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 1/226 (0%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
+R+ G G+ D ++ + +++ G DLLLC G+F +A+
Sbjct: 6 LRLLACGDVEGKFDVLFNRVRAIQKKS-GNFDLLLCVGNFFGSTPDAE------------ 52
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGV-VKYRGVR 503
+ +Y +G KKAP+ T +G N++ + + G +A NI YLG G+ G++
Sbjct: 53 ---WEKYKTGIKKAPIQTYVLGANNQETVKYFQDADGCELAENITYLGRKGIFTGSSGLQ 109
Query: 504 IGGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRS 683
I +SG ++ G + P + S++R++ + Q K +DI L+ WP+
Sbjct: 110 IVYLSGTESLNEPVPG-YSFSPKDVSSLRTM-------LCSTSQFK-GVDILLTSPWPKY 160
Query: 684 IYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSA 821
+ ++GN EV+ GS S L LKP Y F+A
Sbjct: 161 VGNFGNSS----------GEVDTKKCGSALVSSLATDLKPRYHFAA 196
>ref|XP_861616.1| PREDICTED: similar to CWF19-like 1, cell cycle control isoform 4
[Canis familiaris].
Length = 497
Score = 68.2 bits (165), Expect = 9e-12
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 1/226 (0%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
+R+ G G+ D ++ + +++ G DLLLC G+F +A+
Sbjct: 6 LRLLACGDVEGKFDVLFNRVRAIQKKS-GNFDLLLCVGNFFGSTPDAE------------ 52
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGV-VKYRGVR 503
+ +Y +G KKAP+ T +G N++ + + G +A NI YLG G+ G++
Sbjct: 53 ---WEKYKTGIKKAPIQTYVLGANNQETVKYFQDADGCELAENITYLGRKGIFTGSSGLQ 109
Query: 504 IGGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRS 683
I +SG ++ G + P + S++R++ + Q K +DI L+ WP+
Sbjct: 110 IVYLSGTESLNEPVPG-YSFSPKDVSSLRTM-------LCSTSQFK-GVDILLTSPWPKY 160
Query: 684 IYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSA 821
+ ++GN EV+ GS S L LKP Y F+A
Sbjct: 161 VGNFGNSS----------GEVDTKKCGSALVSSLATDLKPRYHFAA 196
>ref|XP_861584.1| PREDICTED: similar to CWF19-like 1, cell cycle control isoform 3
[Canis familiaris].
Length = 239
Score = 68.2 bits (165), Expect = 9e-12
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 1/226 (0%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
+R+ G G+ D ++ + +++ G DLLLC G+F +A+
Sbjct: 6 LRLLACGDVEGKFDVLFNRVRAIQKKS-GNFDLLLCVGNFFGSTPDAE------------ 52
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGV-VKYRGVR 503
+ +Y +G KKAP+ T +G N++ + + G +A NI YLG G+ G++
Sbjct: 53 ---WEKYKTGIKKAPIQTYVLGANNQETVKYFQDADGCELAENITYLGRKGIFTGSSGLQ 109
Query: 504 IGGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRS 683
I +SG ++ G + P + S++R++ + Q K +DI L+ WP+
Sbjct: 110 IVYLSGTESLNEPVPG-YSFSPKDVSSLRTM-------LCSTSQFK-GVDILLTSPWPKY 160
Query: 684 IYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSA 821
+ ++GN EV+ GS S L LKP Y F+A
Sbjct: 161 VGNFGNSS----------GEVDTKKCGSALVSSLATDLKPRYHFAA 196
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,030,735
Number of extensions: 929118
Number of successful extensions: 5438
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5327
Number of HSP's successfully gapped: 5
Length of query: 283
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 181
Effective length of database: 15,474,232
Effective search space: 2800835992
Effective search space used: 2800835992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004590
(850 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057300.2| lariat debranching enzyme [Homo sapiens]. 477 e-135
Alignment gi|NP_060764.3| CWF19-like protein 1 [Homo sapiens]. 67 3e-11
>ref|NP_057300.2| lariat debranching enzyme [Homo sapiens].
Length = 544
Score = 477 bits (1227), Expect = e-135
Identities = 223/227 (98%), Positives = 227/227 (100%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
MRVAVAGCCHGELDKIYETLALAERRGPGP+DLLLCCGDFQAVRNEADLRCMAVPPKYRH
Sbjct: 1 MRVAVAGCCHGELDKIYETLALAERRGPGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRH 60
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 506
MQTFYRYYSGEKKAPVLT+FIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI
Sbjct: 61 MQTFYRYYSGEKKAPVLTLFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 120
Query: 507 GGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRSI 686
GGISGIFKSHDYRKGHFECPPYN+STIRSIYHVRNIEVYKLKQLKQP+DIFLSHDWPRSI
Sbjct: 121 GGISGIFKSHDYRKGHFECPPYNSSTIRSIYHVRNIEVYKLKQLKQPIDIFLSHDWPRSI 180
Query: 687 YHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL 827
YHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL
Sbjct: 181 YHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL 227
>ref|NP_060764.3| CWF19-like protein 1 [Homo sapiens].
Length = 538
Score = 66.6 bits (161), Expect = 3e-11
Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 1/226 (0%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
+R+ G G+ D ++ + +++ G DLLLC G+F +A+
Sbjct: 6 LRLLACGDVEGKFDILFNRVQAIQKKS-GNFDLLLCVGNFFGSTQDAE------------ 52
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGV-VKYRGVR 503
+ Y +G KKAP+ T +G N++ + + G +A NI YLG G+ G++
Sbjct: 53 ---WEEYKTGIKKAPIQTYVLGANNQETVKYFQDADGCELAENITYLGRKGIFTGSSGLQ 109
Query: 504 IGGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRS 683
I +SG ++ G + P + S++R + + Q K +DI L+ WP+
Sbjct: 110 IVYLSGTESLNEPVPG-YSFSPKDVSSLRMM-------LCTTSQFK-GVDILLTSPWPKC 160
Query: 684 IYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSA 821
+ ++GN EV+ GS S L LKP Y F+A
Sbjct: 161 VGNFGNSS----------GEVDTKKCGSALVSSLATGLKPRYHFAA 196
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,408,801
Number of extensions: 914117
Number of successful extensions: 5319
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5219
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 182
Effective length of database: 14,967,800
Effective search space: 2724139600
Effective search space used: 2724139600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004590
(850 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113580.2| lariat debranching enzyme [Mus musculus]. 465 e-131
Alignment gi|NP_001074546.1| CWF19-like protein 1 [Mus musculus]. 70 3e-12
>ref|NP_113580.2| lariat debranching enzyme [Mus musculus].
Length = 550
Score = 465 bits (1197), Expect = e-131
Identities = 217/227 (95%), Positives = 224/227 (98%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
MRVAVAGCCHGELDKIYETLALAERRG GP+DLLLCCGDFQAVRNEADLRCMAVPPKYRH
Sbjct: 1 MRVAVAGCCHGELDKIYETLALAERRGSGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRH 60
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 506
MQTFYRYYSGEKKAPVLT+FIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI
Sbjct: 61 MQTFYRYYSGEKKAPVLTIFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 120
Query: 507 GGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRSI 686
GGISGIFKSHDYRKGHFECPPYN+STIRSIYHVRNIEVYKLKQLKQP+ IFLSHDWPR+I
Sbjct: 121 GGISGIFKSHDYRKGHFECPPYNSSTIRSIYHVRNIEVYKLKQLKQPVHIFLSHDWPRNI 180
Query: 687 YHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHL 827
YHYGNKKQLLKTKSFFRQEVEN+TLGSPAASELLEHL+P YWFSAHL
Sbjct: 181 YHYGNKKQLLKTKSFFRQEVENSTLGSPAASELLEHLQPAYWFSAHL 227
>ref|NP_001074546.1| CWF19-like protein 1 [Mus musculus].
Length = 537
Score = 69.7 bits (169), Expect = 3e-12
Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 1/226 (0%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
+R+ G G+ D ++ + +++ G DLLLC G+F +A+
Sbjct: 6 LRLLACGDVEGKFDVLFNRVRTIQKKS-GNFDLLLCVGNFFGSAQDAE------------ 52
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGV-VKYRGVR 503
+ Y +G KKAP+ T +G N+E + + + G +A NI YLG GV G++
Sbjct: 53 ---WEEYKTGNKKAPIQTYVLGANNEETANYFQGADGCELAENITYLGRKGVFTGSSGLQ 109
Query: 504 IGGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPRS 683
I +SG +S D P + S++R++ + Q K +DI L+ WP+
Sbjct: 110 IVYLSGT-ESLDEPVPAHSFSPKDVSSLRTM-------LCSASQFK-GVDILLTSPWPKY 160
Query: 684 IYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSA 821
+ +GN EV+ GS S L LKP Y F+A
Sbjct: 161 VGSFGNSS----------GEVDTKNCGSALISSLAVSLKPRYHFAA 196
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,345,148
Number of extensions: 770264
Number of successful extensions: 4435
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4344
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 183
Effective length of database: 12,613,959
Effective search space: 2308354497
Effective search space used: 2308354497
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004590
(850 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358628.1| PREDICTED: lariat debranching enzyme-like [S... 286 8e-78
Alignment gi|XP_001929566.2| PREDICTED: CWF19-like protein 1, partial [Su... 64 1e-10
>ref|XP_003358628.1| PREDICTED: lariat debranching enzyme-like [Sus scrofa].
Length = 142
Score = 286 bits (733), Expect = 8e-78
Identities = 136/140 (97%), Positives = 136/140 (97%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH
Sbjct: 1 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 60
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 506
MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI
Sbjct: 61 MQTFYRYYSGEKKAPVLTVFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 120
Query: 507 GGISGIFKSHDYRKGHFECP 566
GGISGIFKSHDYRK CP
Sbjct: 121 GGISGIFKSHDYRK-ELACP 139
>ref|XP_001929566.2| PREDICTED: CWF19-like protein 1, partial [Sus scrofa].
Length = 490
Score = 63.9 bits (154), Expect = 1e-10
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 2/227 (0%)
Frame = +3
Query: 147 MRVAVAGCCHGELDKIYETLALAERRGPGPIDLLLCCGDFQAVRNEADLRCMAVPPKYRH 326
+R+ G G+ D ++ + +++ G DLLLC G+F + +
Sbjct: 6 LRLLACGDVEGKFDILFNRVRAIQKKS-GNFDLLLCVGNFFGSTPDTE------------ 52
Query: 327 MQTFYRYYSGEKKAPVLTVFIGGNH-EASNHLQELPYGGWVAPNIYYLGLAGV-VKYRGV 500
+ Y +G KKAP+ T +G N+ E + Q++ G +A NI YLG G+ G+
Sbjct: 53 ---WEEYKTGVKKAPIQTYVLGANNQETVKYFQDVD-GCELAENITYLGRKGIFTGSSGL 108
Query: 501 RIGGISGIFKSHDYRKGHFECPPYNASTIRSIYHVRNIEVYKLKQLKQPMDIFLSHDWPR 680
+I +SG ++ G + P + S++R + + Q K +DI L+ WP+
Sbjct: 109 QIVYLSGTESLNEPVPG-YSFSPKDVSSLRMM-------LCSTPQFK-GVDILLTSPWPK 159
Query: 681 SIYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSA 821
+ ++GN EV+ GS S L LKP Y F+A
Sbjct: 160 YVGNFGNSS----------GEVDTKKCGSALISSLAAGLKPRYHFAA 196
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,047,638
Number of extensions: 579231
Number of successful extensions: 3572
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3510
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 185
Effective length of database: 8,904,026
Effective search space: 1647244810
Effective search space used: 1647244810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004590
(850 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 682 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 682 bits (344), Expect = 0.0
Identities = 344/344 (100%)
Strand = Plus / Minus
Query: 2 atattgccagagactcgattgcaggaggcggcatctcagttgaggttggcgggagctgag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86480089 atattgccagagactcgattgcaggaggcggcatctcagttgaggttggcgggagctgag 86480030
Query: 62 cgatcggtctggacttcgctgctctgcctggcctagctctggtttggggggttgcgggca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86480029 cgatcggtctggacttcgctgctctgcctggcctagctctggtttggggggttgcgggca 86479970
Query: 122 gcgctttctgccttgggcgggcaggatgcgggtggctgtggccggctgctgccatggcga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86479969 gcgctttctgccttgggcgggcaggatgcgggtggctgtggccggctgctgccatggcga 86479910
Query: 182 gctggacaagatctatgagacgctggcgctggcggagcggcgcggccccgggccgataga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86479909 gctggacaagatctatgagacgctggcgctggcggagcggcgcggccccgggccgataga 86479850
Query: 242 tctgctgctgtgctgcggagacttccaggcggtgcgcaacgaggccgacctgcgctgcat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86479849 tctgctgctgtgctgcggagacttccaggcggtgcgcaacgaggccgacctgcgctgcat 86479790
Query: 302 ggccgtgccacccaagtaccgccacatgcagaccttctacaggt 345
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86479789 ggccgtgccacccaagtaccgccacatgcagaccttctacaggt 86479746
Score = 408 bits (206), Expect = e-111
Identities = 216/218 (99%), Gaps = 1/218 (0%)
Strand = Plus / Plus
Query: 634 agctgaagcagcctatggacatattcttatctcatgattggccaagaagtatatatcatt 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86507142 agctgaagcagcctatggacatattcttatctcatgattggccaagaagtatatatcatt 86507201
Query: 694 atggaaataagaagcaacttcttaagactaaatcttttttccgacaagaagtggaaaata 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86507202 atggaaataagaagcaacttcttaagactaaatcttttttccgacaagaagtggaaaata 86507261
Query: 754 acacattgggaagtcctgctgcttctgagcttttagagcacttgaaacctacttactggt 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86507262 acacattgggaagtcctgctgcttctgagcttttagagcacttgaaacctacttactggt 86507321
Query: 814 tttctgcgcaccttca-gtgaagtttgcagccctgatg 850
|||||||||||||||| ||||||||||||||| |||||
Sbjct: 86507322 tttctgcgcaccttcacgtgaagtttgcagccttgatg 86507359
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 342 aggtattactctggagagaaaaaagcccccgttctcacagttttcatcggagggaaccat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86479153 aggtattactctggagagaaaaaagcccccgttctcacagttttcatcggagggaaccat 86479094
Query: 402 gaagcctcaaatcatttgcaggagttaccttacggtggctgggtggccccaaacatttat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86479093 gaagcctcaaatcatttgcaggagttaccttacggtggctgggtggccccaaacatttat 86479034
Query: 462 tatttaggt 470
|||||||||
Sbjct: 86479033 tatttaggt 86479025
Score = 168 bits (85), Expect = 3e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 467 aggtttggcaggtgtagtaaaataccgaggtgtgaggattggtggaatctctggtatctt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86477980 aggtttggcaggtgtagtaaaataccgaggtgtgaggattggtggaatctctggtatctt 86477921
Query: 527 taaatctcatgactatcgaaaaggt 551
|||||||||||||||||||||||||
Sbjct: 86477920 taaatctcatgactatcgaaaaggt 86477896
Score = 73.8 bits (37), Expect = 1e-10
Identities = 72/81 (88%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 555 tttgagtgccctccttataatgcgtctacaataaggagtatatatcatgtgagaaatatc 614
||||||||||||| |||||||| ||| ||||| || |||||| |||||||||||||||
Sbjct: 86505692 tttgagtgccctc-ttataatggctcttcaatagggggtatat-tcatgtgagaaatatt 86505749
Query: 615 gaagtctacaaattaaaacag 635
||||||||||||| |||||||
Sbjct: 86505750 gaagtctacaaataaaaacag 86505770
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,026,648
Number of extensions: 151
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 5
Length of query: 850
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 829
Effective length of database: 2,808,413,156
Effective search space: 2328174506324
Effective search space used: 2328174506324
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)