Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004595
(923 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030441.1| complement component C9 precursor [Bos tauru... 384 e-107
Alignment gi|NP_001039444.1| complement component C6 precursor [Bos tauru... 98 1e-20
Alignment gi|NP_001039431.1| complement component C7 precursor [Bos tauru... 94 2e-19
Alignment gi|NP_001039750.1| complement component C8 alpha chain [Bos tau... 92 6e-19
Alignment gi|NP_001039606.2| complement component 8, beta polypeptide [Bo... 89 5e-18
>ref|NP_001030441.1| complement component C9 precursor [Bos taurus].
Length = 548
Score = 384 bits (986), Expect = e-107
Identities = 189/283 (66%), Positives = 216/283 (76%), Gaps = 3/283 (1%)
Frame = +1
Query: 82 MRVRRRFTFAVCILEISILSAGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQ 261
M +RF FA+CILEIS+L AGPTPSY P + GTP PIDCRMS W EWS+CDPCLKQ
Sbjct: 1 MSAGQRFAFAICILEISLLRAGPTPSYDP--AERQGTPLPIDCRMSSWSEWSKCDPCLKQ 58
Query: 262 MFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEEDCGSDFQCGTGRCIKRRLLCN 441
MFRSRSIE FGQFNG+KCVDAVGDR+QCVPTE CED EE CG+DFQCGTGRCIK RLLCN
Sbjct: 59 MFRSRSIEIFGQFNGRKCVDAVGDRQQCVPTEACEDPEEGCGNDFQCGTGRCIKNRLLCN 118
Query: 442 XXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGYGINILGMDPLTTPFDNEYYNGL 621
VVEESELARTAG+GINILGMDPL+TPFDN+YYNGL
Sbjct: 119 EDNDCGDYSDEDNCEQDPRPPCRNRVVEESELARTAGFGINILGMDPLSTPFDNQYYNGL 178
Query: 622 CDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHERQIQVLKTIIEEKKSNFNADLT 801
CDRV DGNTLTYYR+PWNVA+L Y+TK DKNFRTE HE IQ+L+TIIEEKK NFNA L+
Sbjct: 179 CDRVWDGNTLTYYRRPWNVASLTYDTKADKNFRTENHEESIQILRTIIEEKKLNFNAGLS 238
Query: 802 IKITPTEAIEQLKSKNVELANE-ENSNP--MNNKAHLRFTYSK 921
+K TP EAIE+ K ++E +++ S+P + +A RFTYSK
Sbjct: 239 VKYTPVEAIEKNKCVDLEHSDKGSTSSPSKLAAEAKFRFTYSK 281
>ref|NP_001039444.1| complement component C6 precursor [Bos taurus].
Length = 932
Score = 97.8 bits (242), Expect = 1e-20
Identities = 51/179 (28%), Positives = 82/179 (45%)
Frame = +1
Query: 178 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 357
+CN PI+CR+ +G WS CDPC+++ F+ RSI QF GQ C + + + C+P++
Sbjct: 72 ECNWQTCPINCRLGDYGPWSDCDPCVQKRFKVRSILRPSQFGGQPCTEPLMTFQPCIPSK 131
Query: 358 PCEDLEEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESEL 537
C+ E DC + F+C +GRCI +L CN
Sbjct: 132 LCKIEEIDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRKKTVCSRSH--NPIPG 189
Query: 538 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKN 714
+ G G + L +P DN + G+C V+ YR P N+ + +E + ++
Sbjct: 190 VQLMGMGFHFLAGEPRGEVLDNSFTGGVCRTVKSSRASNPYRVPANLENVNFEVQTKED 248
>ref|NP_001039431.1| complement component C7 precursor [Bos taurus].
Length = 843
Score = 94.0 bits (232), Expect = 2e-19
Identities = 50/196 (25%), Positives = 83/196 (42%)
Frame = +1
Query: 196 SPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLE 375
SPI+C+ + WS C+ C K R RSI +GQ+ G CV + + + C PT C E
Sbjct: 24 SPINCQWGSYAPWSECNGCTKTQTRRRSIAVYGQYGGHSCVGSAFETQPCQPTRGC-PTE 82
Query: 376 EDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGY 555
+ CG F+C +G+CI + L+CN + G
Sbjct: 83 DGCGERFRCFSGQCISKSLVCNGDSDCEEDGADEDRCEDAESRPACDKDKPPPNIELTGR 142
Query: 556 GINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHE 735
G N L + + + G C +V G+ +YR N+ + ++ K++ +F E++
Sbjct: 143 GYNALTGQFRNQVLNTKSFGGQCRKVYSGDGRDFYRLSGNILSYTFQVKINNDFNNEFYN 202
Query: 736 RQIQVLKTIIEEKKSN 783
+K E S+
Sbjct: 203 STWAYVKETSTEHSSS 218
>ref|NP_001039750.1| complement component C8 alpha chain [Bos taurus].
Length = 589
Score = 92.0 bits (227), Expect = 6e-19
Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 18/225 (8%)
Frame = +1
Query: 190 TPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCED 369
TP+ + C++ W EW+ C PC + +R RS+ +F G C V D+ C C
Sbjct: 36 TPTAVSCQLDNWAEWTDCFPCQDKKYRYRSLLQPNKFGGTICSGNVWDQASCHSPTACLS 95
Query: 370 LEEDCGSDFQC-GTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELART 546
+ CG DFQC TGRC+KR L+CN + +
Sbjct: 96 -QAQCGQDFQCKETGRCLKRHLVCNGDKDCLDGSDEDDCEDVRILENDCSQYDPIPGSEK 154
Query: 547 AGYGINILGMDPLTTPFDNEYYNG-----------------LCDRVRDGNTLTYYRKPWN 675
A G NIL + +D YY G C+R+ G+ Y+RKP+N
Sbjct: 155 AALGYNILTQEEAQHVYDARYYGGQCETVYNGEWRELQYDPACERLYYGDDDKYFRKPYN 214
Query: 676 VAALIYETKVDKNFRTEYHERQIQVLKTIIEEKKSNFNADLTIKI 810
+E + D +E + +L + +K + ++ LTI +
Sbjct: 215 FLKYHFEAQADTKISSEIYNDANDLLTKVKNDK--SVSSGLTIGV 257
>ref|NP_001039606.2| complement component 8, beta polypeptide [Bos taurus].
Length = 590
Score = 89.0 bits (219), Expect = 5e-18
Identities = 71/238 (29%), Positives = 99/238 (41%), Gaps = 1/238 (0%)
Frame = +1
Query: 19 WQINVFQALTAIPLGVASLEQMRVRRRFTFAVCILEISILSAGPTPSYHPKPVDCNGTPS 198
W++ V L LG S+ R R + + S+ T S VD TP
Sbjct: 9 WRVPVELFLLCAALGSFSVPSSRGERPPSLGSNAVNESLAKTRQTRS-----VDV--TPL 61
Query: 199 PIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEE 378
PIDC +S W W+ CDPC K+ +R + QF+G++C + + CV PC +
Sbjct: 62 PIDCELSSWSSWTTCDPCQKKRYRHAYLIRPSQFHGEQCNFSDKEVEDCVSNRPCRS-QV 120
Query: 379 DCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGYG 558
C TGRCI RRLLCN +E+ + G
Sbjct: 121 RCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCRKTYKKCQQE--MEQYWAIGSLASG 178
Query: 559 INILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFR-TEY 729
IN+ + D+ YY GLC N T +RKP+NV I +T+ +F TEY
Sbjct: 179 INLFTNNLEGPVLDHRYYAGLCSPHYILN--TRFRKPYNVENFIPQTRGKYDFTLTEY 234
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,277,454
Number of extensions: 950576
Number of successful extensions: 3562
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3502
Number of HSP's successfully gapped: 7
Length of query: 307
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,306,398
Effective search space: 2932811590
Effective search space used: 2932811590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004595
(923 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536494.2| PREDICTED: similar to Complement component C9 p... 291 6e-79
Alignment gi|XP_868028.1| PREDICTED: similar to Complement component C6 p... 102 5e-22
Alignment gi|XP_536488.2| PREDICTED: similar to Complement component C6 p... 102 5e-22
Alignment gi|XP_536489.2| PREDICTED: similar to complement component 6 [C... 100 2e-21
Alignment gi|XP_546339.2| PREDICTED: similar to complement component 7 pr... 92 5e-19
Alignment gi|XP_536695.2| PREDICTED: similar to complement component 8, a... 91 2e-18
Alignment gi|XP_536694.2| PREDICTED: similar to Complement component C8 b... 83 4e-16
Alignment gi|XP_868034.1| PREDICTED: similar to complement component 7 pr... 77 2e-14
Alignment gi|NP_001075179.1| SCO-spondin [Canis lupus familiaris]. 50 2e-06
>ref|XP_536494.2| PREDICTED: similar to Complement component C9 precursor [Canis
familiaris].
Length = 589
Score = 291 bits (745), Expect = 6e-79
Identities = 148/259 (57%), Positives = 174/259 (67%), Gaps = 13/259 (5%)
Frame = +1
Query: 184 NGTPSPIDCRMSPWGEWSRCDPCLKQM------------FRSRSIETFGQFNGQKCVDAV 327
N TP P+DCRMS W +WS CDPCLKQM F SRSI+ F QF GQK V A+
Sbjct: 44 NDTPFPVDCRMSSWSQWSECDPCLKQMVKILIFPAGFVQFPSRSIQVFRQFKGQKGVAAL 103
Query: 328 GDRRQCVPTEPCEDLEEDCGS-DFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXX 504
G+R P +PC EED G DF C TGRCIK+RLLCN
Sbjct: 104 GNRGHWDPGDPCAPGEEDWGGGDFGCRTGRCIKKRLLCNGDNDCGDFSDEDDCESDPRLP 163
Query: 505 XXXXVVEESELARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAA 684
VVEESELAR AGYGINILGM+PL+TPFDNEYYNGLCDRVRDGNTL YYR+PWNVA+
Sbjct: 164 CREKVVEESELARMAGYGINILGMEPLSTPFDNEYYNGLCDRVRDGNTLVYYRRPWNVAS 223
Query: 685 LIYETKVDKNFRTEYHERQIQVLKTIIEEKKSNFNADLTIKITPTEAIEQLKSKNVELAN 864
L+YETK DKNFRTEY+E QI+ K I++EK SNF AD+ +K+TPTEAIE+ K N E +
Sbjct: 224 LVYETKADKNFRTEYYEEQIESFKKIVQEKTSNFKADIALKLTPTEAIEKCKI-NPEGED 282
Query: 865 EENSNPMNNKAHLRFTYSK 921
+ +N ++ +FTYSK
Sbjct: 283 SPRDSSINAESKFQFTYSK 301
>ref|XP_868028.1| PREDICTED: similar to Complement component C6 precursor isoform 2
[Canis familiaris].
Length = 936
Score = 102 bits (254), Expect = 5e-22
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 1/194 (0%)
Frame = +1
Query: 178 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 357
+CN PI+C + +G WS CDPC+++ F+ RSI QF GQ C + + + C+P++
Sbjct: 72 ECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPLVTFQPCIPSK 131
Query: 358 PCEDLEEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESEL 537
C+ E DC + F+C +GRCI +L CN
Sbjct: 132 LCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVCPGKRQWNPIPS 191
Query: 538 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKV-DKN 714
+ G G + L +P DN + G+C V+ YR P N+ + +E + + +
Sbjct: 192 VQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPYRVPANLENVNFEVQTKEDD 251
Query: 715 FRTEYHERQIQVLK 756
T++++ I + K
Sbjct: 252 LETDFYKDLISLTK 265
>ref|XP_536488.2| PREDICTED: similar to Complement component C6 precursor isoform 1
[Canis familiaris].
Length = 936
Score = 102 bits (254), Expect = 5e-22
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 1/194 (0%)
Frame = +1
Query: 178 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 357
+CN PI+C + +G WS CDPC+++ F+ RSI QF GQ C + + + C+P++
Sbjct: 72 ECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPLVTFQPCIPSK 131
Query: 358 PCEDLEEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESEL 537
C+ E DC + F+C +GRCI +L CN
Sbjct: 132 LCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVCPGKRQWNPIPS 191
Query: 538 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKV-DKN 714
+ G G + L +P DN + G+C V+ YR P N+ + +E + + +
Sbjct: 192 VQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPYRVPANLENVNFEVQTKEDD 251
Query: 715 FRTEYHERQIQVLK 756
T++++ I + K
Sbjct: 252 LETDFYKDLISLTK 265
>ref|XP_536489.2| PREDICTED: similar to complement component 6 [Canis familiaris].
Length = 2211
Score = 100 bits (249), Expect = 2e-21
Identities = 58/199 (29%), Positives = 91/199 (45%)
Frame = +1
Query: 178 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 357
+CN PI+C + +G WS CDPC+++ F+ RSI QF GQ C + + + C+P++
Sbjct: 49 ECNWQRCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPSQFGGQPCTEPLVTFQPCIPSK 108
Query: 358 PCEDLEEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESEL 537
C+ E DC + F+C +GRCI +L CN
Sbjct: 109 LCKIEEIDCKNKFRCDSGRCIANKLECNGENDCGDNSDERNCGRAKAVCPGKRQWNPIPS 168
Query: 538 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNF 717
+ G G + L +P DN + G+C V+ YR P N+ + +E D +F
Sbjct: 169 VQLMGAGFHFLAGEPRGEVLDNSFTGGICKTVKSSKASNPYRVPANLENVNFE---DSSF 225
Query: 718 RTEYHERQIQVLKTIIEEK 774
T H + I+VL ++ K
Sbjct: 226 -TRIH-KVIEVLNFTMKTK 242
>ref|XP_546339.2| PREDICTED: similar to complement component 7 precursor isoform 1
[Canis familiaris].
Length = 863
Score = 92.4 bits (228), Expect = 5e-19
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 16/245 (6%)
Frame = +1
Query: 196 SPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLE 375
SP++C+ + WS C+ C K RS+ +GQ+ G CV + + + C PT C E
Sbjct: 24 SPVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTRGC-PTE 82
Query: 376 EDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGY 555
E CG F+C +G+CI + L+CN + + G
Sbjct: 83 EGCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDKCEDSESRPSCDLDQPPPNIELTGN 142
Query: 556 GINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHE 735
G N L + + + G C +V G+ +YR N+ + ++ K++ +F E++
Sbjct: 143 GYNELTGQFKNKVINTKSFGGQCRKVFSGDGNFFYRLSGNILSYTFQVKINNDFNYEFYN 202
Query: 736 RQIQVLK------TIIEEKKSNFNADLTI---KITPTEAIEQLKS-------KNVELANE 867
+K T +K S F++ + +I+ T + K+ VE+A
Sbjct: 203 SSWSYVKHTSAEYTSSRKKSSLFSSSSSSSYNRISHTSKTHENKNHQLLIVQNTVEVAQF 262
Query: 868 ENSNP 882
N+NP
Sbjct: 263 VNNNP 267
>ref|XP_536695.2| PREDICTED: similar to complement component 8, alpha polypeptide
precursor [Canis familiaris].
Length = 589
Score = 90.9 bits (224), Expect = 2e-18
Identities = 64/248 (25%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Frame = +1
Query: 202 IDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEED 381
+ C++S W EW+ C PC + +R RS+ +F G C V D+ C C +
Sbjct: 40 VPCQLSNWSEWTDCFPCQDKKYRYRSLLQPDKFGGTICSGDVWDQASCHSPTACLH-QAQ 98
Query: 382 CGSDFQC-GTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGYG 558
CG DFQC TGRC+KR L+CN E + +A G
Sbjct: 99 CGQDFQCKETGRCLKRHLVCNGDKDCLDGSDEDDCEDVRVAENDCSQYEPIPGSESAALG 158
Query: 559 INILGMDPLTTPFDNEYYNG-----------------LCDRVRDGNTLTYYRKPWNVAAL 687
NIL +D YY G C+R+ G Y+RKP+N
Sbjct: 159 YNILTQKEAQHVYDPRYYGGQCETVYNGEWREIRYDPTCERLYYGEDEKYFRKPYNFLKY 218
Query: 688 IYETKVDKNFRTEYHERQIQVLKTIIEEKKSNF-NADLTIKITPTEAIEQLKSKNVELAN 864
+E D F +E ++ +L + K +NF + +T+ ++ T + + +V +++
Sbjct: 219 HFEALADTRFSSELYDDAHDLLSKV---KNNNFVSTGVTVGVSFTGSSVTV---DVGVSS 272
Query: 865 EENSNPMN 888
+NS+ ++
Sbjct: 273 SQNSSSLD 280
>ref|XP_536694.2| PREDICTED: similar to Complement component C8 beta chain precursor
(Complement component 8 beta subunit) [Canis
familiaris].
Length = 590
Score = 82.8 bits (203), Expect = 4e-16
Identities = 70/267 (26%), Positives = 102/267 (38%)
Frame = +1
Query: 10 PSPWQINVFQALTAIPLGVASLEQMRVRRRFTFAVCILEISILSAGPTPSYHPKPVDCNG 189
P W+ L LG SL R R + LE + ++ S + VD
Sbjct: 6 PQGWRALAELILLCAALGCLSLPGSRSERPQS-----LESNAVNESLAKSRQTRSVDV-- 58
Query: 190 TPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCED 369
T PIDC +S W W+ CDPC K+ +R S+ QF G+ C + + CV + PC
Sbjct: 59 TLMPIDCELSSWSSWTMCDPCQKKRYRHASLLRPSQFYGEPCNFSDKEVEDCVTSRPCRS 118
Query: 370 LEEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTA 549
+ C TGRC+ RRLLCN +E+
Sbjct: 119 -QVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHE--MEQYWAIGRL 175
Query: 550 GYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEY 729
G+N+ D+ YY G C N T +RKP+NV + +T+ F
Sbjct: 176 ASGVNLFTNSFEGPVLDHRYYAGGCSPHYILN--TRFRKPYNVESYTPQTQGKYKFALTA 233
Query: 730 HERQIQVLKTIIEEKKSNFNADLTIKI 810
+E I + ++S + KI
Sbjct: 234 YESYSDFEHNITKTERSTSSFSFGFKI 260
>ref|XP_868034.1| PREDICTED: similar to complement component 7 precursor isoform 2
[Canis familiaris].
Length = 143
Score = 77.4 bits (189), Expect = 2e-14
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +1
Query: 196 SPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLE 375
SP++C+ + WS C+ C K RS+ +GQ+ G CV + + + C PT C E
Sbjct: 24 SPVNCQWDTYAPWSECNGCTKTQTHRRSVAVYGQYGGHPCVGSAFETQPCEPTRGC-PTE 82
Query: 376 EDCGSDFQCGTGRCIKRRLLCN 441
E CG F+C +G+CI + L+CN
Sbjct: 83 EGCGERFRCFSGQCISKSLVCN 104
>ref|NP_001075179.1| SCO-spondin [Canis lupus familiaris].
Length = 5110
Score = 50.4 bits (119), Expect = 2e-06
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 142 AGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRS-IETFGQFNGQKCV 318
AG + H K + P+D SPWG WS CDPCL Q RSR+ + G+ C
Sbjct: 3396 AGEAGAQHQKEACPSSPDCPVDGAWSPWGLWSPCDPCLGQSHRSRACVWPPTPEGGRPC- 3454
Query: 319 DAVGDRRQCVPTEPCEDLEEDCGSDFQCGTGR 414
G RQ + PC+D C CG G+
Sbjct: 3455 --PGSYRQ---SRPCQDNATQC---TDCGGGQ 3478
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,850,163
Number of extensions: 980084
Number of successful extensions: 3195
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3145
Number of HSP's successfully gapped: 10
Length of query: 307
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 205
Effective length of database: 15,474,232
Effective search space: 3172217560
Effective search space used: 3172217560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004595
(923 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001728.1| complement component C9 precursor [Homo sapiens]. 360 1e-99
Alignment gi|NP_000553.1| complement component C8 alpha chain precursor [... 105 6e-23
Alignment gi|NP_001108603.2| complement component C6 precursor [Homo sapi... 97 2e-20
Alignment gi|NP_000056.2| complement component C6 precursor [Homo sapiens]. 97 2e-20
Alignment gi|NP_000578.2| complement component C7 precursor [Homo sapiens]. 96 5e-20
Alignment gi|NP_000057.1| complement component C8 beta chain preproprotei... 82 9e-16
>ref|NP_001728.1| complement component C9 precursor [Homo sapiens].
Length = 559
Score = 360 bits (923), Expect = 1e-99
Identities = 176/282 (62%), Positives = 207/282 (73%), Gaps = 2/282 (0%)
Frame = +1
Query: 82 MRVRRRFTFAVCILEISILSAGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQ 261
M R F A+CILEISIL+A T SY P+ + +G+ S IDCRMSPW EWS+CDPCL+Q
Sbjct: 1 MSACRSFAVAICILEISILTAQYTTSYDPELTESSGSASHIDCRMSPWSEWSQCDPCLRQ 60
Query: 262 MFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEEDCGSDFQCGTGRCIKRRLLCN 441
MFRSRSIE FGQFNG++C DAVGDRRQCVPTEPCED E+DCG+DFQC TGRCIK RL CN
Sbjct: 61 MFRSRSIEVFGQFNGKRCTDAVGDRRQCVPTEPCEDAEDDCGNDFQCSTGRCIKMRLRCN 120
Query: 442 XXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGYGINILGMDPLTTPFDNEYYNGL 621
VVEESELARTAGYGINILGMDPL+TPFDNE+YNGL
Sbjct: 121 GDNDCGDFSDEDDCESEPRPPCRDRVVEESELARTAGYGINILGMDPLSTPFDNEFYNGL 180
Query: 622 CDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHERQIQVLKTIIEEKKSNFNADLT 801
C+R RDGNTLTYYR+PWNVA+LIYETK +KNFRTE++E QI+ K+II+EK SNFNA ++
Sbjct: 181 CNRDRDGNTLTYYRRPWNVASLIYETKGEKNFRTEHYEEQIEAFKSIIQEKTSNFNAAIS 240
Query: 802 IKITPTEAIEQLKSKNVELANEE--NSNPMNNKAHLRFTYSK 921
+K TPTE + E EE +S ++ K RF+YSK
Sbjct: 241 LKFTPTE------TNKAEQCCEETASSISLHGKGSFRFSYSK 276
>ref|NP_000553.1| complement component C8 alpha chain precursor [Homo sapiens].
Length = 584
Score = 105 bits (262), Expect = 6e-23
Identities = 69/258 (26%), Positives = 110/258 (42%), Gaps = 21/258 (8%)
Frame = +1
Query: 106 FAVCILEISILSAGPTPSYHPKP---VDCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSR 276
FAV +S+++ P + K V TP+ + C++S W EW+ C PC + +R R
Sbjct: 2 FAVVFFILSLMTCQPGVTAQEKVNQRVRRAATPAAVTCQLSNWSEWTDCFPCQDKKYRHR 61
Query: 277 SIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEEDCGSDFQC-GTGRCIKRRLLCNXXXX 453
S+ +F G C + D+ C + C + CG DFQC TGRC+KR L+CN
Sbjct: 62 SLLQPNKFGGTICSGDIWDQASCSSSTTCV-RQAQCGQDFQCKETGRCLKRHLVCNGDQD 120
Query: 454 XXXXXXXXXXXXXXXXXXXXXVVEESELARTAGYGINILGMDPLTTPFDNEYYNG----- 618
E ++ A G NIL + + +D YY G
Sbjct: 121 CLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETV 180
Query: 619 ------------LCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHERQIQVLKTI 762
C+R+ G+ Y+RKP+N +E D +E+++ +L +
Sbjct: 181 YNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLKYHFEALADTGISSEFYDNANDLLSKV 240
Query: 763 IEEKKSNFNADLTIKITP 816
++K +F +TI I P
Sbjct: 241 KKDKSDSFG--VTIGIGP 256
>ref|NP_001108603.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 97.4 bits (241), Expect = 2e-20
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
Frame = +1
Query: 178 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 357
+CN PI+C + +G WS CDPC+++ + RS+ QF GQ C + + C+P++
Sbjct: 72 ECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAPLVAFQPCIPSK 131
Query: 358 PCEDLEEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESEL 537
C+ E DC + F+C +GRCI R+L CN S
Sbjct: 132 LCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPS-- 189
Query: 538 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETK-VDKN 714
+ G G + L +P DN + G+C V+ T YR P N+ + +E + + +
Sbjct: 190 VQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLENVGFEVQTAEDD 249
Query: 715 FRTEYHE 735
+T++++
Sbjct: 250 LKTDFYK 256
>ref|NP_000056.2| complement component C6 precursor [Homo sapiens].
Length = 934
Score = 97.4 bits (241), Expect = 2e-20
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
Frame = +1
Query: 178 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 357
+CN PI+C + +G WS CDPC+++ + RS+ QF GQ C + + C+P++
Sbjct: 72 ECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLRPSQFGGQPCTAPLVAFQPCIPSK 131
Query: 358 PCEDLEEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESEL 537
C+ E DC + F+C +GRCI R+L CN S
Sbjct: 132 LCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPS-- 189
Query: 538 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETK-VDKN 714
+ G G + L +P DN + G+C V+ T YR P N+ + +E + + +
Sbjct: 190 VQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLENVGFEVQTAEDD 249
Query: 715 FRTEYHE 735
+T++++
Sbjct: 250 LKTDFYK 256
>ref|NP_000578.2| complement component C7 precursor [Homo sapiens].
Length = 843
Score = 95.9 bits (237), Expect = 5e-20
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 7/234 (2%)
Frame = +1
Query: 196 SPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLE 375
SP++C+ + WS C+ C K R RS+ +GQ+ GQ CV + + C PT C E
Sbjct: 24 SPVNCQWDFYAPWSECNGCTKTQTRRRSVAVYGQYGGQPCVGNAFETQSCEPTRGC-PTE 82
Query: 376 EDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGY 555
E CG F+C +G+CI + L+CN + + G
Sbjct: 83 EGCGERFRCFSGQCISKSLVCNGDSDCDEDSADEDRCEDSERRPSCDIDKPPPNIELTGN 142
Query: 556 GINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHE 735
G N L + + + G C +V G+ +YR NV + ++ K++ +F E++
Sbjct: 143 GYNELTGQFRNRVINTKSFGGQCRKVFSGDGKDFYRLSGNVLSYTFQVKINNDFNYEFYN 202
Query: 736 RQIQVLK------TIIEEKKSNFNADLTIKITPTEAIEQL-KSKNVELANEENS 876
+K T K+S F + + + T ++ K K+ +L EN+
Sbjct: 203 STWSYVKHTSTEHTSSSRKRSFFRSSSSSSRSYTSHTNEIHKGKSYQLLVVENT 256
>ref|NP_000057.1| complement component C8 beta chain preproprotein [Homo sapiens].
Length = 591
Score = 81.6 bits (200), Expect = 9e-16
Identities = 72/269 (26%), Positives = 103/269 (38%), Gaps = 5/269 (1%)
Frame = +1
Query: 19 WQINVFQALTAIPLGVASLEQMRVRRRFTFAVCILEISILSAGPTPSYHPKPVDCNGTPS 198
W+ V L LG SL R R +F + S S + VD T
Sbjct: 9 WRAPVELFLLCAALGCLSLPGSRGERPHSFGSNAVNKSFAK-----SRQMRSVDV--TLM 61
Query: 199 PIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEE 378
PIDC +S W W+ CDPC K+ +R + QF+G+ C + + CV PC +
Sbjct: 62 PIDCELSSWSSWTTCDPCQKKRYRYAYLLQPSQFHGEPCNFSDKEVEDCVTNRPCGS-QV 120
Query: 379 DCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGYG 558
C TGRC+ RRLLCN + E+ + G G
Sbjct: 121 RCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKC-------QHEMDQYWGIG 173
Query: 559 INILGMDPLTTPF-----DNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRT 723
G++ T F D+ YY G C N T +RKP+NV + +T+ F
Sbjct: 174 SLASGINLFTNSFEGPVLDHRYYAGGCSPHYILN--TRFRKPYNVESYTPQTQGKYEFIL 231
Query: 724 EYHERQIQVLKTIIEEKKSNFNADLTIKI 810
+ +E + + E+ S KI
Sbjct: 232 KEYESYSDFERNVTEKMASKSGFSFGFKI 260
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,134,094
Number of extensions: 967733
Number of successful extensions: 3359
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3318
Number of HSP's successfully gapped: 9
Length of query: 307
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,934,836
Effective search space: 3061641380
Effective search space used: 3061641380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004595
(923 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038513.1| complement component C9 [Mus musculus]. 291 5e-79
Alignment gi|NP_001230766.1| complement component C7 [Mus musculus]. 96 3e-20
Alignment gi|NP_666260.1| complement component C8 alpha chain precursor [... 96 3e-20
Alignment gi|NP_057913.2| complement component 6 [Mus musculus]. 92 4e-19
Alignment gi|NP_598643.1| complement component C8 beta chain precursor [M... 89 4e-18
Alignment gi|XP_003086563.1| PREDICTED: SCO-spondin-like isoform 4 [Mus m... 50 2e-06
Alignment gi|XP_003086560.1| PREDICTED: SCO-spondin-like isoform 1 [Mus m... 50 2e-06
Alignment gi|XP_003086561.1| PREDICTED: SCO-spondin-like isoform 2 [Mus m... 50 2e-06
Alignment gi|XP_003086562.1| PREDICTED: SCO-spondin-like isoform 3 [Mus m... 50 2e-06
Alignment gi|NP_775604.2| SCO-spondin [Mus musculus]. 50 2e-06
>ref|NP_038513.1| complement component C9 [Mus musculus].
Length = 561
Score = 291 bits (745), Expect = 5e-79
Identities = 148/287 (51%), Positives = 176/287 (61%)
Frame = +1
Query: 55 PLGVASLEQMRVRRRFTFAVCILEISILSAGPTPSYHPKPVDCNGTPSPIDCRMSPWGEW 234
P G+ M T A+ I + + + P P + P PIDCRMSPW W
Sbjct: 5 PPGLPRRSSMASGMAITLALAIFALGVNAQMPIPVSREEQEQ--HYPIPIDCRMSPWSNW 62
Query: 235 SRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEEDCGSDFQCGTGR 414
S CDPCLKQ FRSRSI FGQFNG+ CVD +GDR+ C PT+ CE+++E+CG+DFQC TGR
Sbjct: 63 SECDPCLKQRFRSRSILAFGQFNGKSCVDVLGDRQGCEPTQECEEIQENCGNDFQCETGR 122
Query: 415 CIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGYGINILGMDPLTTP 594
CIKRRLLCN V EESEL TAGYGINILGM+PL TP
Sbjct: 123 CIKRRLLCNGDNDCGDYSDENDCDDDPRTPCRDRVAEESELGLTAGYGINILGMEPLRTP 182
Query: 595 FDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHERQIQVLKTIIEEK 774
FDNE+YNGLCDRVRD TYYRKPWNV +LIYETK DK+FRTE ++ ++V K I EK
Sbjct: 183 FDNEFYNGLCDRVRDEK--TYYRKPWNVVSLIYETKADKSFRTENYDEHLEVFKAINREK 240
Query: 775 KSNFNADLTIKITPTEAIEQLKSKNVELANEENSNPMNNKAHLRFTY 915
SNFNAD +K + TE E K E +S P N A +F+Y
Sbjct: 241 TSNFNADFALKFSATEVPE--KGAGEVSPAEHSSKPTNISAKFKFSY 285
>ref|NP_001230766.1| complement component C7 [Mus musculus].
Length = 845
Score = 96.3 bits (238), Expect = 3e-20
Identities = 50/198 (25%), Positives = 87/198 (43%)
Frame = +1
Query: 196 SPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLE 375
SP++C+ +G WS C+ C K R RS+ +GQ+ G C + + + C P C E
Sbjct: 24 SPVNCKWDSYGPWSECNGCTKTQTRRRSVAVYGQYGGYPCEGSAFETQSCKPERGC-PTE 82
Query: 376 EDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGY 555
E CG F+C +G+CI + L+CN + T GY
Sbjct: 83 EGCGDRFRCFSGQCISKSLVCNGDPDCEEDGADEDKCENVANPSCNIDKPPPNIELT-GY 141
Query: 556 GINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHE 735
G N++ + + + G C +V G+ +YR N+ + ++ KVD +F E++
Sbjct: 142 GYNVVTGQGKKRVINTKSFGGQCRKVFSGDGKDFYRLSGNILSYTFQVKVDNDFNYEFYN 201
Query: 736 RQIQVLKTIIEEKKSNFN 789
+K E+ + ++
Sbjct: 202 SSWSYIKHTSTEQNTFYS 219
>ref|NP_666260.1| complement component C8 alpha chain precursor [Mus musculus].
Length = 587
Score = 96.3 bits (238), Expect = 3e-20
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 18/230 (7%)
Frame = +1
Query: 190 TPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCED 369
TP + C++S W +W+ C PC + +R RS+ +F G C + D C PC
Sbjct: 33 TPQAVSCQLSDWYKWTDCFPCQDKKYRYRSLLQPSKFGGTICSGDIWDEASCDSPTPCL- 91
Query: 370 LEEDCGSDFQC-GTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELART 546
+ CG DFQC TGRC+KR L+CN E +
Sbjct: 92 RQAQCGQDFQCRETGRCLKRHLVCNGDNDCLDGSDESDCEDVRVTEDDCHQYEPIPGSER 151
Query: 547 AGYGINILGMDPLTTPFDNEYYNGLCDRVRDGN-----------------TLTYYRKPWN 675
A G NIL + + +D +YY G C+ V +G+ Y+RKP+N
Sbjct: 152 AALGYNILTQEEAQSVYDAKYYGGQCETVYNGDWRKLRYDPTCERLYYGEDEKYFRKPYN 211
Query: 676 VAALIYETKVDKNFRTEYHERQIQVLKTIIEEKKSNFNADLTIKITPTEA 825
+E D + +E+++ + I K + +A +T+ + P ++
Sbjct: 212 FLKYHFEALADTSISSEFYDDANDLFFHIKNGK--SHSAGVTVGVAPVKS 259
>ref|NP_057913.2| complement component 6 [Mus musculus].
Length = 769
Score = 92.4 bits (228), Expect = 4e-19
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 1/202 (0%)
Frame = +1
Query: 178 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 357
+CN PI+C + +G WS CDPC ++ + +S+ QF GQ C + + + CVP++
Sbjct: 72 ECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEPLVTFQPCVPSK 131
Query: 358 PCEDLEEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESEL 537
C+ E +C + F C +GRCI +L CN S
Sbjct: 132 LCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVCTRIYTPIPS-- 189
Query: 538 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETK-VDKN 714
+ G G + L +P DN + G+C V+ YR N+ + +E + ++ +
Sbjct: 190 VQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVNFEVQTIEDD 249
Query: 715 FRTEYHERQIQVLKTIIEEKKS 780
+TE+++ I K E+ S
Sbjct: 250 LKTEFYKNLISFEKNKNEDSLS 271
>ref|NP_598643.1| complement component C8 beta chain precursor [Mus musculus].
Length = 589
Score = 89.4 bits (220), Expect = 4e-18
Identities = 64/245 (26%), Positives = 98/245 (40%), Gaps = 2/245 (0%)
Frame = +1
Query: 193 PSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDL 372
P+PIDC +S W W+ CDPC K+ +R + QF G+ C + + CV +PC
Sbjct: 59 PAPIDCELSTWSSWTACDPCQKKRYRHTYLLRPSQFYGELCDLSDKEVEDCVTNQPCRS- 117
Query: 373 EEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAG 552
+ C TGRC+ RRLLCN +E+
Sbjct: 118 QVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKNCQRE--MEQYWAIDRLA 175
Query: 553 YGINILGMDPLTTPFDNEYYNGLCD--RVRDGNTLTYYRKPWNVAALIYETKVDKNFRTE 726
GIN+ D+ YY G C + D N +RKP+NV + +TK + F
Sbjct: 176 SGINLFTNTFEGPVLDHRYYAGGCSPHYILDTN----FRKPYNVESYTPQTKCEYEFTLT 231
Query: 727 YHERQIQVLKTIIEEKKSNFNADLTIKITPTEAIEQLKSKNVELANEENSNPMNNKAHLR 906
+E + +IE+K FN T ++ + +++ + E N +
Sbjct: 232 EYESYSDFERLVIEKKTHMFN------FTSGFKVDGVMDLGIKVESNEGKNYVTRTKRFA 285
Query: 907 FTYSK 921
T SK
Sbjct: 286 HTQSK 290
>ref|XP_003086563.1| PREDICTED: SCO-spondin-like isoform 4 [Mus musculus].
Length = 5000
Score = 50.4 bits (119), Expect = 2e-06
Identities = 30/82 (36%), Positives = 36/82 (43%)
Frame = +1
Query: 142 AGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVD 321
+G T H N T P+D SPWG WS CD CL Q +RSR +G K
Sbjct: 3289 SGGTGVQHQMEACPNATACPVDGAWSPWGPWSSCDACLGQSYRSRVCSHPPISDGGK--P 3346
Query: 322 AVGDRRQCVPTEPCEDLEEDCG 387
+G +Q P L DCG
Sbjct: 3347 CLGGYQQSRPCRNSSTLCTDCG 3368
>ref|XP_003086560.1| PREDICTED: SCO-spondin-like isoform 1 [Mus musculus].
Length = 5144
Score = 50.4 bits (119), Expect = 2e-06
Identities = 30/82 (36%), Positives = 36/82 (43%)
Frame = +1
Query: 142 AGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVD 321
+G T H N T P+D SPWG WS CD CL Q +RSR +G K
Sbjct: 3432 SGGTGVQHQMEACPNATACPVDGAWSPWGPWSSCDACLGQSYRSRVCSHPPISDGGK--P 3489
Query: 322 AVGDRRQCVPTEPCEDLEEDCG 387
+G +Q P L DCG
Sbjct: 3490 CLGGYQQSRPCRNSSTLCTDCG 3511
>ref|XP_003086561.1| PREDICTED: SCO-spondin-like isoform 2 [Mus musculus].
Length = 5145
Score = 50.4 bits (119), Expect = 2e-06
Identities = 30/82 (36%), Positives = 36/82 (43%)
Frame = +1
Query: 142 AGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVD 321
+G T H N T P+D SPWG WS CD CL Q +RSR +G K
Sbjct: 3434 SGGTGVQHQMEACPNATACPVDGAWSPWGPWSSCDACLGQSYRSRVCSHPPISDGGK--P 3491
Query: 322 AVGDRRQCVPTEPCEDLEEDCG 387
+G +Q P L DCG
Sbjct: 3492 CLGGYQQSRPCRNSSTLCTDCG 3513
>ref|XP_003086562.1| PREDICTED: SCO-spondin-like isoform 3 [Mus musculus].
Length = 5002
Score = 50.4 bits (119), Expect = 2e-06
Identities = 30/82 (36%), Positives = 36/82 (43%)
Frame = +1
Query: 142 AGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVD 321
+G T H N T P+D SPWG WS CD CL Q +RSR +G K
Sbjct: 3291 SGGTGVQHQMEACPNATACPVDGAWSPWGPWSSCDACLGQSYRSRVCSHPPISDGGK--P 3348
Query: 322 AVGDRRQCVPTEPCEDLEEDCG 387
+G +Q P L DCG
Sbjct: 3349 CLGGYQQSRPCRNSSTLCTDCG 3370
>ref|NP_775604.2| SCO-spondin [Mus musculus].
Length = 5142
Score = 50.4 bits (119), Expect = 2e-06
Identities = 30/82 (36%), Positives = 36/82 (43%)
Frame = +1
Query: 142 AGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVD 321
+G T H N T P+D SPWG WS CD CL Q +RSR +G K
Sbjct: 3430 SGGTGVQHQMEACPNATACPVDGAWSPWGPWSSCDACLGQSYRSRVCSHPPISDGGK--P 3487
Query: 322 AVGDRRQCVPTEPCEDLEEDCG 387
+G +Q P L DCG
Sbjct: 3488 CLGGYQQSRPCRNSSTLCTDCG 3509
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,648,425
Number of extensions: 815867
Number of successful extensions: 3010
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2955
Number of HSP's successfully gapped: 13
Length of query: 307
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 206
Effective length of database: 12,583,923
Effective search space: 2592288138
Effective search space used: 2592288138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004595
(923 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090917.1| complement component C9 [Sus scrofa]. 526 e-150
Alignment gi|NP_001090919.1| complement component C8 alpha chain [Sus scr... 102 3e-22
Alignment gi|NP_001090918.1| complement component C6 [Sus scrofa]. 101 7e-22
Alignment gi|XP_003359813.1| PREDICTED: complement component C6-like [Sus... 95 5e-20
Alignment gi|NP_999447.1| complement component C7 precursor [Sus scrofa]. 94 8e-20
Alignment gi|NP_001090920.1| complement component C8B [Sus scrofa]. 83 2e-16
>ref|NP_001090917.1| complement component C9 [Sus scrofa].
Length = 543
Score = 526 bits (1354), Expect = e-150
Identities = 253/280 (90%), Positives = 253/280 (90%)
Frame = +1
Query: 82 MRVRRRFTFAVCILEISILSAGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQ 261
MRVRRRFTFAVCILEISILSAGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQ
Sbjct: 1 MRVRRRFTFAVCILEISILSAGPTPSYHPKPVDCNGTPSPIDCRMSPWGEWSRCDPCLKQ 60
Query: 262 MFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEEDCGSDFQCGTGRCIKRRLLCN 441
MFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEEDCGSDFQCGTGRCIKRRLLCN
Sbjct: 61 MFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEEDCGSDFQCGTGRCIKRRLLCN 120
Query: 442 XXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGYGINILGMDPLTTPFDNEYYNGL 621
VVEESELARTAGYGINILGMDPLTTPFDNEYYNGL
Sbjct: 121 GDNDCGDFSDEDDCDSDPRPPCRERVVEESELARTAGYGINILGMDPLTTPFDNEYYNGL 180
Query: 622 CDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHERQIQVLKTIIEEKKSNFNADLT 801
CDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHERQIQVLKTIIEEKKSNFNADLT
Sbjct: 181 CDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHERQIQVLKTIIEEKKSNFNADLT 240
Query: 802 IKITPTEAIEQLKSKNVELANEENSNPMNNKAHLRFTYSK 921
IK TPTEAIEQLKSKNVELANEENSNPMNNKAH RFTYSK
Sbjct: 241 IKFTPTEAIEQLKSKNVELANEENSNPMNNKAHFRFTYSK 280
>ref|NP_001090919.1| complement component C8 alpha chain [Sus scrofa].
Length = 589
Score = 102 bits (254), Expect = 3e-22
Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 19/231 (8%)
Frame = +1
Query: 184 NGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQC-VPTEP 360
+ TP+ + C++S W EW+ C PC + +R RS+ +F G C V D+ C PTE
Sbjct: 34 SSTPTAVSCQLSNWAEWTECFPCQDKKYRYRSLLQPNKFGGAICSGNVWDQASCHSPTEC 93
Query: 361 CEDLEEDCGSDFQC-GTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESEL 537
+ CG DFQC TGRC+KR L+CN +
Sbjct: 94 LR--QAQCGQDFQCKETGRCLKRHLVCNGDRDCLDGSDEDDCEDVRIFEDDCSQYDPIPG 151
Query: 538 ARTAGYGINILGMDPLTTPFDNEYYNG-----------------LCDRVRDGNTLTYYRK 666
+ A G NIL + + +D YY G C+R+ G+ Y+R
Sbjct: 152 SERATLGYNILTQEETQSVYDARYYGGQCETVYNGEWRELRYDSACERLYYGDDEKYFRN 211
Query: 667 PWNVAALIYETKVDKNFRTEYHERQIQVLKTIIEEKKSNFNADLTIKITPT 819
P+N +E D F +E ++ +LK + EK + +A +T+ I PT
Sbjct: 212 PYNFLKYHFEALADSKFSSESYDDANDLLKKVKNEK--SVSAGVTVGIGPT 260
>ref|NP_001090918.1| complement component C6 [Sus scrofa].
Length = 935
Score = 101 bits (251), Expect = 7e-22
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 1/187 (0%)
Frame = +1
Query: 178 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 357
+CN PI+C + +G WS CDPC+++ F+ RSI QF GQ C + + R C+P++
Sbjct: 72 ECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILRPNQFGGQPCTEPLMTFRPCIPSK 131
Query: 358 PCEDLEEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESEL 537
C+ E DC + F+C +GRCI +L CN S
Sbjct: 132 LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCSRKYNPIPS-- 189
Query: 538 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKV-DKN 714
+ G G +IL +P N + G+C V+ +R P N+ + +E + + +
Sbjct: 190 VQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVNFEVQTKEDD 249
Query: 715 FRTEYHE 735
F+T+++E
Sbjct: 250 FQTDFYE 256
>ref|XP_003359813.1| PREDICTED: complement component C6-like [Sus scrofa].
Length = 267
Score = 95.1 bits (235), Expect = 5e-20
Identities = 51/173 (29%), Positives = 79/173 (45%)
Frame = +1
Query: 178 DCNGTPSPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTE 357
+CN PI+C + +G WS CDPC+++ F+ RSI QF GQ C + + R C+P++
Sbjct: 73 ECNWQTCPINCLLGDYGPWSDCDPCVEKQFKVRSILHPNQFGGQPCTEPLMTFRPCIPSK 132
Query: 358 PCEDLEEDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESEL 537
C+ E DC + F+C +GRCI +L CN S
Sbjct: 133 LCKIEEVDCKNKFRCDSGRCIASKLECNGENDCGDNSDERNCGRTKAVCSRKYNPIPS-- 190
Query: 538 ARTAGYGINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYE 696
+ G G +IL +P N + G+C V+ +R P N+ + +E
Sbjct: 191 VQLMGAGFHILAGEPRGEVLGNSFTGGICKTVKSSKASNPFRVPANLENVDFE 243
>ref|NP_999447.1| complement component C7 precursor [Sus scrofa].
Length = 843
Score = 94.4 bits (233), Expect = 8e-20
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 7/234 (2%)
Frame = +1
Query: 196 SPIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLE 375
SP++C+ + WS C+ C K R R + +GQ+ G CV + + + C PT C E
Sbjct: 24 SPVNCQWDSYAPWSECNGCTKTQTRRRPVAVYGQYGGHPCVGSTFETQSCEPTRGC-PTE 82
Query: 376 EDCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGY 555
E CG F+C +G+CI + L+CN + + G
Sbjct: 83 EGCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDRCEDSESRPSCDLSKPPPNIELTGN 142
Query: 556 GINILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFRTEYHE 735
G N L + + + G C +V G+ +YR NV + ++ KV+ +F E++
Sbjct: 143 GYNALTGQFRNRVLNTKSFGGQCRKVFSGDGRDFYRLSGNVLSYTFQVKVNNDFNYEFYN 202
Query: 736 RQIQVLKTIIEEKKSN-------FNADLTIKITPTEAIEQLKSKNVELANEENS 876
K E S+ F++ + + E LK K+ +L +N+
Sbjct: 203 STWSYAKHTSTEHTSSSKGRVFIFSSSSSSSSYYAKTYEILKKKSYQLLVVQNT 256
>ref|NP_001090920.1| complement component C8B [Sus scrofa].
Length = 611
Score = 82.8 bits (203), Expect = 2e-16
Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 1/238 (0%)
Frame = +1
Query: 19 WQINVFQALTAIPLGVASLEQMRVRRRFTFAVCILEISILSAGPTPSYHPKPVDCNGTPS 198
W++ L LG SL R R + LE + ++ S + VD T +
Sbjct: 21 WRMPARLFLLCAALGCLSLPGSRGERPHS-----LESNAVNESLGKSRQTRSVDV--TLT 73
Query: 199 PIDCRMSPWGEWSRCDPCLKQMFRSRSIETFGQFNGQKCVDAVGDRRQCVPTEPCEDLEE 378
PIDC +S W W+ CDPC K+ +R S+ QF+G+ C + + CV PC +
Sbjct: 74 PIDCELSSWSSWTTCDPCQKKRYRHASLLRPSQFHGEPCNFSDKEVEDCVSNRPCRS-QV 132
Query: 379 DCGSDFQCGTGRCIKRRLLCNXXXXXXXXXXXXXXXXXXXXXXXXXVVEESELARTAGYG 558
C TGRCI RRLLCN +++ + G
Sbjct: 133 RCEGFVCAQTGRCINRRLLCNGDNDCGDQSDEANCKRIYKKCQQE--MDQYWAIGSLASG 190
Query: 559 INILGMDPLTTPFDNEYYNGLCDRVRDGNTLTYYRKPWNVAALIYETKVDKNFR-TEY 729
IN+ + D+ YY G C N T +RKP+NV +T+ +F TEY
Sbjct: 191 INLFTNNLEGPVLDHRYYAGACSPHYILN--TRFRKPYNVENFNPQTQGKYDFALTEY 246
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,704,857
Number of extensions: 610112
Number of successful extensions: 2013
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1985
Number of HSP's successfully gapped: 6
Length of query: 307
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 208
Effective length of database: 8,879,129
Effective search space: 1846858832
Effective search space used: 1846858832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004595
(923 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 426 e-117
>Sscrofa_Chr16
|| Length = 86898991
Score = 426 bits (215), Expect = e-117
Identities = 224/227 (98%)
Strand = Plus / Minus
Query: 697 accaaagttgacaaaaatttcagaactgaatatcatgaaagacagattcaagtactcaaa 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25807300 accaaagttgacaaaaatttcagaactgaatatcatgaaagacagattcaagtactcaaa 25807241
Query: 757 actatcatcgaagagaagaaatcaaattttaatgcagatttaactataaaaatcacacct 816
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 25807240 actatcatcgaagagaagaaatcaaattttaatgcagatttaactataaaattcacacct 25807181
Query: 817 accgaagcaattgaacagctgaaaagtaaaaatgtagaacttgccaacgaagaaaactcc 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25807180 accgaagcaattgaacagctgaaaagtaaaaatgtagaacttgccaacgaagaaaactca 25807121
Query: 877 aatcctatgaataacaaggctcacctccgatttacatattccaaaac 923
|||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 25807120 aatcctatgaataacaaggctcacttccgatttacatattccaaaac 25807074
Score = 313 bits (158), Expect = 9e-83
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 1 ttgtggtgccccagtccttggcagataaatgtcttccaggcactgactgccattccgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25718314 ttgtggtgccccagtccttggcagataaatgtcttccaggcactgactgccattccgctt 25718255
Query: 61 ggagttgcctcactagagcagatgcgggtccgccggaggttcacctttgcagtatgcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25718254 ggagttgcctcactagagcagatgcgggtccgccggaggttcacctttgcagtatgcatt 25718195
Query: 121 ttagaaataagcattctgagcgccgggcccacacccag 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 25718194 ttagaaataagcattctgagcgccgggcccacacccag 25718157
Score = 278 bits (140), Expect = 5e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 557 ggatcaacatcttaggaatggaccccctcaccaccccatttgacaacgagtactacaacg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25813589 ggatcaacatcttaggaatggaccccctcaccaccccatttgacaacgagtactacaacg 25813530
Query: 617 gactctgtgaccgagttcgggatggaaacaccttgacctactaccgcaaaccctggaacg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25813529 gactctgtgaccgagttcgggatggaaacaccttgacctactaccgcaaaccctggaacg 25813470
Query: 677 tggctgccttgatctatgaa 696
||||||||||||||||||||
Sbjct: 25813469 tggctgccttgatctatgaa 25813450
Score = 276 bits (139), Expect = 2e-71
Identities = 145/147 (98%)
Strand = Plus / Minus
Query: 264 gtttcgctcaaggagcattgagacctttggacaatttaacgggcaaaagtgcgtggacgc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25822628 gtttcgctcaaggagcattgagacctttggacaatttaacgggcaaaagtgcgtggacgc 25822569
Query: 324 cgtgggggacaggcggcaatgcgtgcccacggagccttgcgaagaccttgaggaggactg 383
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 25822568 tgtgggggacaggcggcagtgcgtgcccacggagccttgcgaagaccttgaggaggactg 25822509
Query: 384 tggaagtgactttcagtgtggtacagg 410
|||||||||||||||||||||||||||
Sbjct: 25822508 tggaagtgactttcagtgtggtacagg 25822482
Score = 260 bits (131), Expect = 1e-66
Identities = 145/152 (95%)
Strand = Plus / Minus
Query: 407 caggcagatgcataaagaggcgccttctgtgtaatggtgacaatgactgcggagactttt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25822247 caggcagatgcataaagaggcgccttctgtgtaatggtgacaatgactgcggagactttt 25822188
Query: 467 cagatgaggatgactgtgacagtgatccccgnnnnnnntgccgtgagagagtggtggaag 526
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 25822187 cagatgaggatgactgtgacagtgatccccgccccccctgccgtgagagagtggtggaag 25822128
Query: 527 agtctgagctggcacggacagcaggctacggg 558
||||||||||||||||||||||||||||||||
Sbjct: 25822127 agtctgagctggcacggacagcaggctacggg 25822096
Score = 202 bits (102), Expect = 2e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 163 cacccgaagcccgtggactgcaatggcacaccatcgcccattgactgcaggatgagtccc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25823331 cacccgaagcccgtggactgcaatggcacaccatcgcccattgactgcaggatgagtccc 25823272
Query: 223 tggggcgaatggtcaagatgtgacccttgcctcaaacaaatg 264
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25823271 tggggcgaatggtcaagatgtgacccttgcctcaaacaaatg 25823230
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,569,609
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 6
Length of query: 923
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 902
Effective length of database: 2,808,413,156
Effective search space: 2533188666712
Effective search space used: 2533188666712
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)