Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004624
(936 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180039.1| cytidine deaminase [Bos taurus]. 280 1e-75
Alignment gi|XP_002685770.1| PREDICTED: cytidine deaminase-like [Bos taur... 280 1e-75
>ref|NP_001180039.1| cytidine deaminase [Bos taurus].
Length = 146
Score = 280 bits (716), Expect = 1e-75
Identities = 135/146 (92%), Positives = 141/146 (96%)
Frame = +3
Query: 69 MAQERPSPALEPEHVQQLLFSCREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 248
MAQERPS ALEP+HVQ+LL SC+EAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY
Sbjct: 1 MAQERPSLALEPQHVQRLLLSCQEAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 60
Query: 249 PLGVCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGTNWAVYMTKP 428
PL VCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGT+WAVYMTK
Sbjct: 61 PLSVCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGTDWAVYMTKL 120
Query: 429 DGTYVVRTIQELLPASFGPEDLQKIQ 506
DGTYVVRT++ELLP SFGPEDLQKIQ
Sbjct: 121 DGTYVVRTVRELLPESFGPEDLQKIQ 146
>ref|XP_002685770.1| PREDICTED: cytidine deaminase-like [Bos taurus].
Length = 146
Score = 280 bits (716), Expect = 1e-75
Identities = 135/146 (92%), Positives = 141/146 (96%)
Frame = +3
Query: 69 MAQERPSPALEPEHVQQLLFSCREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 248
MAQERPS ALEP+HVQ+LL SC+EAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY
Sbjct: 1 MAQERPSLALEPQHVQRLLLSCQEAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 60
Query: 249 PLGVCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGTNWAVYMTKP 428
PL VCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGT+WAVYMTK
Sbjct: 61 PLSVCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGTDWAVYMTKL 120
Query: 429 DGTYVVRTIQELLPASFGPEDLQKIQ 506
DGTYVVRT++ELLP SFGPEDLQKIQ
Sbjct: 121 DGTYVVRTVRELLPESFGPEDLQKIQ 146
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,593,508
Number of extensions: 1254635
Number of successful extensions: 4567
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4548
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,306,398
Effective search space: 3004343580
Effective search space used: 3004343580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004624
(936 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544519.1| PREDICTED: similar to cytidine deaminase [Canis... 251 7e-67
>ref|XP_544519.1| PREDICTED: similar to cytidine deaminase [Canis familiaris].
Length = 146
Score = 251 bits (641), Expect = 7e-67
Identities = 120/146 (82%), Positives = 130/146 (89%)
Frame = +3
Query: 69 MAQERPSPALEPEHVQQLLFSCREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 248
MA ERP+ ALEPE VQ+LL SC+EAKKSAYCPYS FPVGAA+LT DGRIFSGCNIEN CY
Sbjct: 1 MAHERPASALEPELVQRLLLSCQEAKKSAYCPYSHFPVGAAILTQDGRIFSGCNIENVCY 60
Query: 249 PLGVCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGTNWAVYMTKP 428
PLGVCAERTAIQKAISEG++EFRAIAI+SDLQDDFISPCGACRQ MREFG+NW VYMTKP
Sbjct: 61 PLGVCAERTAIQKAISEGHREFRAIAISSDLQDDFISPCGACRQFMREFGSNWVVYMTKP 120
Query: 429 DGTYVVRTIQELLPASFGPEDLQKIQ 506
DGTYVV T+ ELLPA FG QK+Q
Sbjct: 121 DGTYVVSTVLELLPAPFGSIGWQKVQ 146
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,122,793
Number of extensions: 1271363
Number of successful extensions: 4815
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4807
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 209
Effective length of database: 15,440,896
Effective search space: 3227147264
Effective search space used: 3227147264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004624
(936 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001776.1| cytidine deaminase [Homo sapiens]. 259 2e-69
>ref|NP_001776.1| cytidine deaminase [Homo sapiens].
Length = 146
Score = 259 bits (663), Expect = 2e-69
Identities = 122/146 (83%), Positives = 134/146 (91%)
Frame = +3
Query: 69 MAQERPSPALEPEHVQQLLFSCREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 248
MAQ+RP+ L+PE VQQLL +EAKKSAYCPYS FPVGAALLT +GRIF GCNIENACY
Sbjct: 1 MAQKRPACTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 60
Query: 249 PLGVCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGTNWAVYMTKP 428
PLG+CAERTAIQKA+SEGYK+FRAIAIASD+QDDFISPCGACRQVMREFGTNW VYMTKP
Sbjct: 61 PLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKP 120
Query: 429 DGTYVVRTIQELLPASFGPEDLQKIQ 506
DGTY+V T+QELLP+SFGPEDLQK Q
Sbjct: 121 DGTYIVMTVQELLPSSFGPEDLQKTQ 146
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,240,226
Number of extensions: 1237352
Number of successful extensions: 4248
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4232
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,934,836
Effective search space: 3136315560
Effective search space used: 3136315560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004624
(936 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082452.1| cytidine deaminase [Mus musculus]. 280 9e-76
>ref|NP_082452.1| cytidine deaminase [Mus musculus].
Length = 146
Score = 280 bits (717), Expect = 9e-76
Identities = 134/146 (91%), Positives = 143/146 (97%)
Frame = +3
Query: 69 MAQERPSPALEPEHVQQLLFSCREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 248
MAQERPS A+EPEHVQ+LL S REAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY
Sbjct: 1 MAQERPSCAVEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 60
Query: 249 PLGVCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGTNWAVYMTKP 428
PLGVCAERTAIQKAISEGYK+FRAIAI+SDLQ++FISPCGACRQVMREFGT+WAVYMTKP
Sbjct: 61 PLGVCAERTAIQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVYMTKP 120
Query: 429 DGTYVVRTIQELLPASFGPEDLQKIQ 506
DGT+VVRT+QELLPASFGPEDLQKIQ
Sbjct: 121 DGTFVVRTVQELLPASFGPEDLQKIQ 146
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,804,300
Number of extensions: 1015542
Number of successful extensions: 3521
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3514
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 211
Effective length of database: 12,583,923
Effective search space: 2655207753
Effective search space used: 2655207753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004624
(936 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127726.2| PREDICTED: cytidine deaminase-like [Sus scro... 302 2e-82
>ref|XP_003127726.2| PREDICTED: cytidine deaminase-like [Sus scrofa].
Length = 146
Score = 302 bits (774), Expect = 2e-82
Identities = 146/146 (100%), Positives = 146/146 (100%)
Frame = +3
Query: 69 MAQERPSPALEPEHVQQLLFSCREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 248
MAQERPSPALEPEHVQQLLFSCREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY
Sbjct: 1 MAQERPSPALEPEHVQQLLFSCREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACY 60
Query: 249 PLGVCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGTNWAVYMTKP 428
PLGVCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGTNWAVYMTKP
Sbjct: 61 PLGVCAERTAIQKAISEGYKEFRAIAIASDLQDDFISPCGACRQVMREFGTNWAVYMTKP 120
Query: 429 DGTYVVRTIQELLPASFGPEDLQKIQ 506
DGTYVVRTIQELLPASFGPEDLQKIQ
Sbjct: 121 DGTYVVRTIQELLPASFGPEDLQKIQ 146
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,750,462
Number of extensions: 833040
Number of successful extensions: 3050
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3033
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 213
Effective length of database: 8,879,129
Effective search space: 1891254477
Effective search space used: 1891254477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004624
(936 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 975 0.0
Sscrofa_Chr15 153 2e-34
>Sscrofa_Chr06
|| Length = 157765593
Score = 975 bits (492), Expect = 0.0
Identities = 513/519 (98%), Gaps = 2/519 (0%)
Strand = Plus / Plus
Query: 391 agtttggcaccaactgggccgtctacatgaccaagccggatggcacatacgttgtcagga 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73042335 agtttggcaccaactgggccgtctacatgaccaagccggatggcacatacgttgtcagga 73042394
Query: 451 ccatccaggagctgctaccggcctcctttgggcccgaggacctgcagaagatccagtgaa 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73042395 ccatccaggagctgctaccggcctcctttgggcccgaggacctgcagaagatccagtgaa 73042454
Query: 511 aggtggagaacatcctgggagaccctgggttcccacatgttgcttaaggggacggccacc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73042455 aggtggagaacatcctgggagaccctgggttcccacatgttgcttaaggggacggccacc 73042514
Query: 571 tggagaatttcatgaggacgttctcacggacctggggactcctgccaaatggcccccaag 630
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 73042515 tggagaatttcatgaggacgttctcacagacctggggactcctgccaaatggcccccaag 73042574
Query: 631 tccacaggcaccaggcgagatgacttttccaaattacattcgagcatcagatttctactg 690
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 73042575 tccacaggcaccaggcgagatgacttttccaaattacattcgagcatcagatatctactg 73042634
Query: 691 aagtgataacgggttttacgccagcctgggtcagagccccacgttgcaactgccttgtcc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73042635 aagtgataacgggttttacgccagcctgggtcagagccccacgttgcaactgccttgtcc 73042694
Query: 751 tccctggggctcagagcacctcgtccctccctttccttcctgtggagcctctttaaaatt 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73042695 tccctggggctcagagcacctcgtccctccctttccttcctgtggagcctctttaaaatt 73042754
Query: 811 ccaaccaagtctgtgctgcttccccatcagcctccacaaggttctagcctgctttgagcg 870
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 73042755 ccatccaagtctgtgctgctt--ccatcagcctccacaaggttctagcctgctttgagcg 73042812
Query: 871 acttttctaattataaacatcatggagcgtcctgattca 909
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 73042813 acttttctaattataaacatcatggagcatcctgattca 73042851
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 2 gtggggcccagcccacactggctgtgaggtctctttccgatcctctgccagccccagggg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73017542 gtggggcccagcccacactggctgtgaggtctctttccgatcctctgccagccccagggg 73017601
Query: 62 gaccaacatggcccaagagcgtcccagtcccgccttggagcccgagcacgtccagcagct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73017602 gaccaacatggcccaagagcgtcccagtcccgccttggagcccgagcacgtccagcagct 73017661
Query: 122 gctcttctcctgccgggaggccaagaagtccgcctactgcccctacagtcgcttcccggt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73017662 gctcttctcctgccgggaggccaagaagtccgcctactgcccctacagtcgcttcccggt 73017721
Query: 182 gggggcggccctcctcaccggggacgggaggattttctccgg 223
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73017722 gggggcggccctcctcaccggggacgggaggattttctccgg 73017763
Score = 228 bits (115), Expect = 4e-57
Identities = 118/119 (99%)
Strand = Plus / Plus
Query: 216 ttctccgggtgcaacatagaaaatgcctgctacccgctgggcgtctgtgctgaacggacc 275
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73032250 ttctcagggtgcaacatagaaaatgcctgctacccgctgggcgtctgtgctgaacggacc 73032309
Query: 276 gccatccagaaggccatctcagaaggatacaaagagttcagggcaattgccatcgccag 334
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73032310 gccatccagaaggccatctcagaaggatacaaagagttcagggcaattgccatcgccag 73032368
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 331 ccagtgatctgcaagatgattttatttcgccatgcggggcctgcaggcaagtcatgagag 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73037189 ccagtgatctgcaagatgattttatttcgccatgcggggcctgcaggcaagtcatgagag 73037248
Query: 391 ag 392
||
Sbjct: 73037249 ag 73037250
>Sscrofa_Chr15
|| Length = 157681621
Score = 153 bits (77), Expect = 2e-34
Identities = 302/369 (81%), Gaps = 6/369 (1%)
Strand = Plus / Minus
Query: 499 agatccagtgaaaggtggagaacatcctgggagaccctgggttcccacatgttgcttaag 558
|||||||||||| | ||||| |||||| |||| ||||| ||| ||||||| |||||||
Sbjct: 99654208 agatccagtgaaggaaggagaggatcctgagagatcctggtttctcacatgt-gcttaag 99654150
Query: 559 gggacg-gccacctggagaatttcatgaggacgttctcacggacctggggactcctgcca 617
||||| || || ||||| |||||| || ||||||| || |||||| ||||| | |
Sbjct: 99654149 aggacgagcttccctgagaacttcatgcagatgttctcaagggcctgggaactccagtcc 99654090
Query: 618 aatggcccccaagtccacaggcaccaggc-gagatgacttttccaaattacattcgagca 676
|||| |||||| ||||||||| |||| |||||| ||||||||| ||||| || ||||
Sbjct: 99654089 aatgagccccaaactcacaggcac-aggcagagatggcttttccaagttacactcaagca 99654031
Query: 677 tcaga-tttctactgaagtgataacgggttttacgccagcctgggtcagagccccacgtt 735
||| ||| ||||||||||||||| | ||| | || ||||||| |||||||||| | ||
Sbjct: 99654030 ccagggtttatactgaagtgataacagatttcatgctagcctggatcagagcccctcttt 99653971
Query: 736 gcaactg-ccttgtcctccctggggctcagagcacctcgtccctccctttccttcctgtg 794
||||| ||||||||| || | |||||||||||||||||||| ||||||||||||||
Sbjct: 99653970 tcaactttccttgtcctgcccaagactcagagcacctcgtccctctctttccttcctgtg 99653911
Query: 795 gagcctctttaaaattccaaccaagtctgtgctgcttccccatcagcctccacaaggttc 854
|| |||||||||||||||| ||||||||||| |||||| ||||||| | | ||||||||
Sbjct: 99653910 gaccctctttaaaattccagtcaagtctgtgcagcttcctcatcagctttctcaaggttc 99653851
Query: 855 tagcctgct 863
|| ||||||
Sbjct: 99653850 taccctgct 99653842
Score = 103 bits (52), Expect = 2e-19
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 180 gtgggggcggccctcctcaccggggacgggaggattttctccgggtgcaacatagaaaat 239
|||||||| ||| || |||| ||| || |||||| |||| || ||||||| |||||||
Sbjct: 99654549 gtgggggctgccttcttcacagggaacaggaggaccttctagggctgcaacaaagaaaat 99654490
Query: 240 gcctgctacccgctgggcgtctgtgctgaacggaccgccatccagaaggccatctcagaa 299
||||| |||| ||| | |||| |||||||| | |||||| |||||||||||| ||||
Sbjct: 99654489 gcctgagaccctctgagagtctatgctgaacaaatggccatcaagaaggccatcttagaa 99654430
Query: 300 ggatacaaagagttcagggcaattgccatcgccagtgatctgcaagatgattttat 355
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Sbjct: 99654429 agatacaaaaagttcagggcaatttccatcaccagttatttgcaagatgtttttat 99654374
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,242,244
Number of extensions: 162
Number of successful extensions: 162
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 7
Length of query: 936
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 915
Effective length of database: 2,808,413,156
Effective search space: 2569698037740
Effective search space used: 2569698037740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)