Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004627
(832 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029598.1| transmembrane protein C9orf46 homolog [Bos t... 258 3e-69
>ref|NP_001029598.1| transmembrane protein C9orf46 homolog [Bos taurus].
Length = 147
Score = 258 bits (660), Expect = 3e-69
Identities = 127/147 (86%), Positives = 135/147 (91%)
Frame = +2
Query: 95 MGFIFSKSMNENMKRQQEFMLMNTRLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTF 274
MGFIFSKSMNEN+K QQEFMLMN+RLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTF
Sbjct: 1 MGFIFSKSMNENLKSQQEFMLMNSRLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTF 60
Query: 275 FGIASVALTAGAIKRKKPAFFLPIIPLGFVFTYQYDLGYGTLLQRMKGEAENILETETSK 454
FGI +V+LTAGAIK KKP PI+PLGFV YQYD+GYGTL+ RMKGEAENILETE SK
Sbjct: 61 FGITAVSLTAGAIKGKKPVLIFPIVPLGFVLAYQYDMGYGTLIHRMKGEAENILETEKSK 120
Query: 455 LQLPKGMITFEGLEKARREQSKFFIDK 535
LQLPKGMITFE LEKAR+EQSKFFIDK
Sbjct: 121 LQLPKGMITFESLEKARKEQSKFFIDK 147
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,013,933
Number of extensions: 603072
Number of successful extensions: 1757
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 176
Effective length of database: 14,339,486
Effective search space: 2523749536
Effective search space used: 2523749536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004627
(832 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852078.1| PREDICTED: similar to Protein C9orf46 [Canis fa... 268 4e-72
>ref|XP_852078.1| PREDICTED: similar to Protein C9orf46 [Canis familiaris].
Length = 147
Score = 268 bits (686), Expect = 4e-72
Identities = 131/147 (89%), Positives = 140/147 (95%)
Frame = +2
Query: 95 MGFIFSKSMNENMKRQQEFMLMNTRLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTF 274
MGFIFSKSMNENMK QQEFMLMN RLQ+ERQL+MQNEMRERQMAMQIAWSREFLKYFGTF
Sbjct: 1 MGFIFSKSMNENMKNQQEFMLMNARLQMERQLMMQNEMRERQMAMQIAWSREFLKYFGTF 60
Query: 275 FGIASVALTAGAIKRKKPAFFLPIIPLGFVFTYQYDLGYGTLLQRMKGEAENILETETSK 454
FGIA+++LTAGAI++KKPAF PIIPL F+FTYQYDLGYGTLLQRMKGEAENILETE SK
Sbjct: 61 FGIAAISLTAGAIRKKKPAFLFPIIPLSFIFTYQYDLGYGTLLQRMKGEAENILETEKSK 120
Query: 455 LQLPKGMITFEGLEKARREQSKFFIDK 535
LQLP+GMITFE LEKARREQSKFFIDK
Sbjct: 121 LQLPRGMITFESLEKARREQSKFFIDK 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,092,517
Number of extensions: 606013
Number of successful extensions: 1679
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1679
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 176
Effective length of database: 15,507,568
Effective search space: 2729331968
Effective search space used: 2729331968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004627
(832 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060935.2| transmembrane protein C9orf46 [Homo sapiens]. 257 1e-68
>ref|NP_060935.2| transmembrane protein C9orf46 [Homo sapiens].
Length = 147
Score = 257 bits (656), Expect = 1e-68
Identities = 123/147 (83%), Positives = 140/147 (95%)
Frame = +2
Query: 95 MGFIFSKSMNENMKRQQEFMLMNTRLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTF 274
MGFIFSKSMNE+MK Q+EFMLMN RLQLERQLIMQ+EMRERQMAMQIAWSREFLKYFGTF
Sbjct: 1 MGFIFSKSMNESMKNQKEFMLMNARLQLERQLIMQSEMRERQMAMQIAWSREFLKYFGTF 60
Query: 275 FGIASVALTAGAIKRKKPAFFLPIIPLGFVFTYQYDLGYGTLLQRMKGEAENILETETSK 454
FG+A+++LTAGAIK+KKPAF +PI+PL F+ TYQYDLGYGTLL+RMKGEAE+ILETE SK
Sbjct: 61 FGLAAISLTAGAIKKKKPAFLVPIVPLSFILTYQYDLGYGTLLERMKGEAEDILETEKSK 120
Query: 455 LQLPKGMITFEGLEKARREQSKFFIDK 535
LQLP+GMITFE +EKAR+EQS+FFIDK
Sbjct: 121 LQLPRGMITFESIEKARKEQSRFFIDK 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,634,791
Number of extensions: 602181
Number of successful extensions: 1599
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1599
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 176
Effective length of database: 14,967,800
Effective search space: 2634332800
Effective search space used: 2634332800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004627
(832 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080638.1| transmembrane protein C9orf46 homolog [Mus musc... 248 4e-66
>ref|NP_080638.1| transmembrane protein C9orf46 homolog [Mus musculus].
Length = 147
Score = 248 bits (633), Expect = 4e-66
Identities = 120/147 (81%), Positives = 133/147 (90%)
Frame = +2
Query: 95 MGFIFSKSMNENMKRQQEFMLMNTRLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTF 274
MGFIFSKSMNENMK QQEFM+ + RLQLER L MQNEMRERQMAMQIAWSREFLKYFGTF
Sbjct: 1 MGFIFSKSMNENMKNQQEFMVTHARLQLERHLTMQNEMRERQMAMQIAWSREFLKYFGTF 60
Query: 275 FGIASVALTAGAIKRKKPAFFLPIIPLGFVFTYQYDLGYGTLLQRMKGEAENILETETSK 454
FGIA+++L GA+KRKKPAF +PI+PL F+FTYQYDLGYGTLLQRMK EAE+ILETE +K
Sbjct: 61 FGIATISLATGALKRKKPAFLVPIVPLSFIFTYQYDLGYGTLLQRMKSEAEDILETEKTK 120
Query: 455 LQLPKGMITFEGLEKARREQSKFFIDK 535
L+LPKG+ITFE LEKARREQSK F DK
Sbjct: 121 LELPKGLITFESLEKARREQSKLFSDK 147
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,847,276
Number of extensions: 515273
Number of successful extensions: 1466
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1463
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 177
Effective length of database: 12,613,959
Effective search space: 2232670743
Effective search space used: 2232670743
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004627
(832 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177146.1| transmembrane protein C9orf46 [Sus scrofa]. 291 2e-79
>ref|NP_001177146.1| transmembrane protein C9orf46 [Sus scrofa].
Length = 147
Score = 291 bits (746), Expect = 2e-79
Identities = 147/147 (100%), Positives = 147/147 (100%)
Frame = +2
Query: 95 MGFIFSKSMNENMKRQQEFMLMNTRLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTF 274
MGFIFSKSMNENMKRQQEFMLMNTRLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTF
Sbjct: 1 MGFIFSKSMNENMKRQQEFMLMNTRLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTF 60
Query: 275 FGIASVALTAGAIKRKKPAFFLPIIPLGFVFTYQYDLGYGTLLQRMKGEAENILETETSK 454
FGIASVALTAGAIKRKKPAFFLPIIPLGFVFTYQYDLGYGTLLQRMKGEAENILETETSK
Sbjct: 61 FGIASVALTAGAIKRKKPAFFLPIIPLGFVFTYQYDLGYGTLLQRMKGEAENILETETSK 120
Query: 455 LQLPKGMITFEGLEKARREQSKFFIDK 535
LQLPKGMITFEGLEKARREQSKFFIDK
Sbjct: 121 LQLPKGMITFEGLEKARREQSKFFIDK 147
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,851,550
Number of extensions: 405508
Number of successful extensions: 1133
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 179
Effective length of database: 8,904,026
Effective search space: 1593820654
Effective search space used: 1593820654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004627
(832 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 430 e-118
>Sscrofa_Chr01
|| Length = 315321322
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Plus
Query: 414 aaggtgaagctgagaacatactggaaacagaaacgagtaagttgcagctgccaaaaggaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242473009 aaggtgaagctgagaacatactggaaacagaaacgagtaagttgcagctgccaaaaggaa 242473068
Query: 474 tgatcacttttgaaggtcttgaaaaagcaagaagggaacagagtaaattcttcatagata 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242473069 tgatcacttttgaaggtcttgaaaaagcaagaagggaacagagtaaattcttcatagata 242473128
Query: 534 aatgaaatcatgtttacccagaacttctcaaaacacagaattgttgacttgaatcatggc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242473129 aatgaaatcatgtttacccagaacttctcaaaacacagaattgttgacttgaatcatggc 242473188
Query: 594 ctttacaatttttaaatacttgagattttgatataat 630
|||||||||||||||||||||||||||||||||||||
Sbjct: 242473189 ctttacaatttttaaatacttgagattttgatataat 242473225
Score = 311 bits (157), Expect = 3e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 657 caagatgagttttgttaaactattttaaaataaaatttgtaacattcaacacaaaatcat 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242473252 caagatgagttttgttaaactattttaaaataaaatttgtaacattcaacacaaaatcat 242473311
Query: 717 ggaagtactataaataactttcagatttcctatatatgtgtgtaattacaaatatctaaa 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242473312 ggaagtactataaataactttcagatttcctatatatgtgtgtaattacaaatatctaaa 242473371
Query: 777 tgtaaaattaataaactacattgttgtgaattcctgg 813
|||||||||||||||||||||||||||||||||||||
Sbjct: 242473372 tgtaaaattaataaactacattgttgtgaattcctgg 242473408
Score = 268 bits (135), Expect = 4e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 172 tcagctggaaaggcagctcatcatgcagaatgaaatgagagaaagacaaatggctatgca 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242468436 tcagctggaaaggcagctcatcatgcagaatgaaatgagagaaagacaaatggctatgca 242468495
Query: 232 gattgcttggtctcgggaattcctcaaatattttggaacgttttttggcattgcaagcgt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242468496 gattgcttggtctcgggaattcctcaaatattttggaacgttttttggcattgcaagcgt 242468555
Query: 292 tgctttaacagctgg 306
|||||||||||||||
Sbjct: 242468556 tgctttaacagctgg 242468570
Score = 216 bits (109), Expect = 1e-53
Identities = 112/113 (99%)
Strand = Plus / Plus
Query: 306 gagcaataaaaaggaagaagccagccttcttcctccctatcattccattaggctttgtct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242469175 gagcaataaaaaggaagaagccagccttcttcctccctatcattccattaggctttgtct 242469234
Query: 366 ttacctaccagtatgacctgggctatggaaccctgctacaaagaatgaaaggt 418
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 242469235 ttacctaccagtatgacctgggctatggaaccttgctacaaagaatgaaaggt 242469287
Score = 176 bits (89), Expect = 1e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 agttccctgcggcggtctaggagaagccaggcctggaagcctccgttgagaccggagaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242425738 agttccctgcggcggtctaggagaagccaggcctggaagcctccgttgagaccggagaga 242425797
Query: 62 cccggcgcctctactgcccactgcccagt 90
|||||||||||||||||||||||||||||
Sbjct: 242425798 cccggcgcctctactgcccactgcccagt 242425826
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 89 gtcaagatggggtttatattttcaaaatctatgaatgagaacatgaaacgccaacaggag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242428639 gtcaagatggggtttatattttcaaaatctatgaatgagaacatgaaacgccaacaggag 242428698
Query: 149 ttcatgcttatgaatactcggcttcag 175
|||||||||||||||||||||||||||
Sbjct: 242428699 ttcatgcttatgaatactcggcttcag 242428725
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,930,179
Number of extensions: 526
Number of successful extensions: 526
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 6
Length of query: 832
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 811
Effective length of database: 2,808,413,156
Effective search space: 2277623069516
Effective search space used: 2277623069516
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)