Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004724
(668 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068615.1| C-C motif chemokine 4 precursor [Bos taurus]. 155 3e-38
Alignment gi|NP_776936.1| C-C motif chemokine 3 precursor [Bos taurus]. 121 5e-28
Alignment gi|XP_002695671.1| PREDICTED: chemokine (C-C motif) ligand 3-li... 112 2e-25
Alignment gi|XP_873462.2| PREDICTED: chemokine (C-C motif) ligand 3-like ... 112 2e-25
Alignment gi|XP_002695669.1| PREDICTED: macrophage inflammatory protein-1... 106 2e-23
Alignment gi|XP_603768.2| PREDICTED: macrophage inflammatory protein-1 al... 106 2e-23
Alignment gi|XP_002695668.1| PREDICTED: macrophage inflammatory protein-1... 104 8e-23
Alignment gi|XP_002702141.1| PREDICTED: macrophage inflammatory protein-1... 104 8e-23
Alignment gi|NP_787021.1| C-C motif chemokine 5 precursor [Bos taurus]. 91 9e-19
Alignment gi|NP_001040050.1| C-C motif chemokine 14 [Bos taurus]. 84 1e-16
>ref|NP_001068615.1| C-C motif chemokine 4 precursor [Bos taurus].
Length = 92
Score = 155 bits (392), Expect = 3e-38
Identities = 69/78 (88%), Positives = 76/78 (97%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AAFCSPALSAPMGSDPPT+CCF+YT+RK+PRNFV DY+ETSSLCSQPAVVFQTKKGRQVC
Sbjct: 15 AAFCSPALSAPMGSDPPTACCFSYTLRKIPRNFVNDYFETSSLCSQPAVVFQTKKGRQVC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
ANPS+ WVQEY+DDLELN
Sbjct: 75 ANPSEPWVQEYVDDLELN 92
>ref|NP_776936.1| C-C motif chemokine 3 precursor [Bos taurus].
Length = 93
Score = 121 bits (304), Expect = 5e-28
Identities = 52/77 (67%), Positives = 62/77 (80%)
Frame = +3
Query: 123 AFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCA 302
A CS SAP G+D PT+CCF+Y R+L R V DY+ETSS CS+P V+FQTKKGRQVCA
Sbjct: 16 ALCSQVFSAPFGADTPTACCFSYVARQLSRKIVADYFETSSQCSKPGVIFQTKKGRQVCA 75
Query: 303 NPSDDWVQEYMDDLELN 353
NP++DWVQEY+ DLELN
Sbjct: 76 NPTEDWVQEYITDLELN 92
>ref|XP_002695671.1| PREDICTED: chemokine (C-C motif) ligand 3-like [Bos taurus].
Length = 93
Score = 112 bits (281), Expect = 2e-25
Identities = 47/78 (60%), Positives = 64/78 (82%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AA + SA +G++ PT+CCF++ R++PR FV DYYETSS CS+P ++F+TK+GRQVC
Sbjct: 15 AALSAHTCSASLGANTPTACCFSFVSRQIPRKFVDDYYETSSQCSKPGIIFKTKRGRQVC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
A+PS+DWVQEY+ DLELN
Sbjct: 75 ADPSEDWVQEYITDLELN 92
>ref|XP_873462.2| PREDICTED: chemokine (C-C motif) ligand 3-like [Bos taurus].
Length = 93
Score = 112 bits (281), Expect = 2e-25
Identities = 47/78 (60%), Positives = 64/78 (82%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AA + SA +G++ PT+CCF++ R++PR FV DYYETSS CS+P ++F+TK+GRQVC
Sbjct: 15 AALSAHTCSASLGANTPTACCFSFVSRQIPRKFVDDYYETSSQCSKPGIIFKTKRGRQVC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
A+PS+DWVQEY+ DLELN
Sbjct: 75 ADPSEDWVQEYITDLELN 92
>ref|XP_002695669.1| PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 2
[Bos taurus].
Length = 93
Score = 106 bits (264), Expect = 2e-23
Identities = 45/78 (57%), Positives = 60/78 (76%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AA + SA ++ PT CCF++ R++PR V DYYETSS CS+P ++F+TK+GRQVC
Sbjct: 15 AALSAHTCSATFSTNTPTDCCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRGRQVC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
A+PS+DWVQEY+ DLELN
Sbjct: 75 ADPSEDWVQEYIIDLELN 92
>ref|XP_603768.2| PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 2
[Bos taurus].
Length = 93
Score = 106 bits (264), Expect = 2e-23
Identities = 45/78 (57%), Positives = 60/78 (76%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AA + SA ++ PT CCF++ R++PR V DYYETSS CS+P ++F+TK+GRQVC
Sbjct: 15 AALSAHTCSATFSTNTPTDCCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRGRQVC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
A+PS+DWVQEY+ DLELN
Sbjct: 75 ADPSEDWVQEYIIDLELN 92
>ref|XP_002695668.1| PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 1
[Bos taurus].
Length = 124
Score = 104 bits (259), Expect = 8e-23
Identities = 44/75 (58%), Positives = 60/75 (80%)
Frame = +3
Query: 129 CSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANP 308
C P L+ + ++ PT CCF++ R++PR V DYYETSS CS+P ++F+TK+GRQVCA+P
Sbjct: 50 CLP-LATAVSTNTPTDCCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRGRQVCADP 108
Query: 309 SDDWVQEYMDDLELN 353
S+DWVQEY+ DLELN
Sbjct: 109 SEDWVQEYIIDLELN 123
>ref|XP_002702141.1| PREDICTED: macrophage inflammatory protein-1 alpha-like [Bos
taurus].
Length = 124
Score = 104 bits (259), Expect = 8e-23
Identities = 44/75 (58%), Positives = 60/75 (80%)
Frame = +3
Query: 129 CSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANP 308
C P L+ + ++ PT CCF++ R++PR V DYYETSS CS+P ++F+TK+GRQVCA+P
Sbjct: 50 CLP-LATAVSTNTPTDCCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRGRQVCADP 108
Query: 309 SDDWVQEYMDDLELN 353
S+DWVQEY+ DLELN
Sbjct: 109 SEDWVQEYIIDLELN 123
>ref|NP_787021.1| C-C motif chemokine 5 precursor [Bos taurus].
Length = 91
Score = 90.9 bits (224), Expect = 9e-19
Identities = 44/78 (56%), Positives = 54/78 (69%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AA C+PA ++P SD T CCF Y R LPR V +Y+ TSS CS AVVF T+K RQVC
Sbjct: 15 AALCAPASASPYASDT-TPCCFAYISRPLPRTHVQEYFYTSSKCSMAAVVFITRKKRQVC 73
Query: 300 ANPSDDWVQEYMDDLELN 353
ANP WV+EY++ LEL+
Sbjct: 74 ANPEKKWVREYINALELS 91
>ref|NP_001040050.1| C-C motif chemokine 14 [Bos taurus].
Length = 94
Score = 83.6 bits (205), Expect = 1e-16
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +3
Query: 144 SAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWV 323
S+ G P CC TY R +PR V+ YYETSS C +P ++F TKKG +CANP D WV
Sbjct: 26 SSSRGPYHPAECCLTYVSRPVPRQRVSSYYETSSQCPKPGIIFITKKGHYICANPRDGWV 85
Query: 324 QEYMDDLE 347
Q+Y+ +LE
Sbjct: 86 QDYIKELE 93
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,684,782
Number of extensions: 692154
Number of successful extensions: 3973
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3915
Number of HSP's successfully gapped: 28
Length of query: 222
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 124
Effective length of database: 14,438,750
Effective search space: 1790405000
Effective search space used: 1790405000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004724
(668 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005250.1| C-C motif chemokine 4 precursor [Canis lupus... 154 5e-38
Alignment gi|XP_537720.1| PREDICTED: similar to Small inducible cytokine ... 111 5e-25
Alignment gi|NP_001005251.1| C-C motif chemokine 3 precursor [Canis lupus... 100 1e-21
Alignment gi|XP_537723.2| PREDICTED: similar to chemokine (C-C motif) lig... 89 5e-18
Alignment gi|NP_001003010.1| C-C motif chemokine 5 precursor [Canis lupus... 86 3e-17
Alignment gi|NP_001005255.1| C-C motif chemokine 8 precursor [Canis lupus... 69 4e-12
Alignment gi|NP_001005253.1| C-C motif chemokine 26 precursor [Canis lupu... 68 8e-12
Alignment gi|NP_001010960.1| C-C motif chemokine 7 [Canis lupus familiari... 66 2e-11
Alignment gi|XP_537722.1| PREDICTED: similar to Small inducible cytokine ... 64 1e-10
Alignment gi|XP_537721.2| PREDICTED: similar to Small inducible cytokine ... 64 2e-10
>ref|NP_001005250.1| C-C motif chemokine 4 precursor [Canis lupus familiaris].
Length = 92
Score = 154 bits (390), Expect = 5e-38
Identities = 68/78 (87%), Positives = 76/78 (97%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AAFCSPALSAPMGSDPPT+CCF+YT+RK+PRNFV DY+ETSSLCSQPAVVFQT++GRQVC
Sbjct: 15 AAFCSPALSAPMGSDPPTACCFSYTLRKIPRNFVADYFETSSLCSQPAVVFQTRRGRQVC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
ANPS+ WVQEYMDDLELN
Sbjct: 75 ANPSEPWVQEYMDDLELN 92
>ref|XP_537720.1| PREDICTED: similar to Small inducible cytokine A3-like 1 precursor
(Tonsillar lymphocyte LD78 beta protein)
(LD78-beta(1-70)) (G0/G1 switch regulatory protein 19-2)
(G0S19-2 protein) (PAT 464.2) [Canis familiaris].
Length = 93
Score = 111 bits (278), Expect = 5e-25
Identities = 47/78 (60%), Positives = 61/78 (78%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AA CS S+ G+D PTSCCF+Y R++PR FV DYYETSS CS+P V+FQTK+G+Q+C
Sbjct: 15 AALCSQTCSSTFGADTPTSCCFSYISRQIPRKFVVDYYETSSQCSKPGVIFQTKRGQQIC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
A+P WVQ+Y+ +LELN
Sbjct: 75 ADPGKAWVQKYITNLELN 92
>ref|NP_001005251.1| C-C motif chemokine 3 precursor [Canis lupus familiaris].
Length = 92
Score = 100 bits (249), Expect = 1e-21
Identities = 41/76 (53%), Positives = 58/76 (76%)
Frame = +3
Query: 123 AFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCA 302
+ CS S P G+D P +CCF+Y +++PR F+ D +ETSS CS+P ++F+T+KGRQ CA
Sbjct: 16 SLCSQVFS-PFGADTPIACCFSYVSKQIPRKFIVDCFETSSQCSKPGIIFETRKGRQACA 74
Query: 303 NPSDDWVQEYMDDLEL 350
NPS+ WVQEY+ DL+L
Sbjct: 75 NPSEAWVQEYVADLKL 90
>ref|XP_537723.2| PREDICTED: similar to chemokine (C-C motif) ligand 14 isoform 1
precursor [Canis familiaris].
Length = 96
Score = 88.6 bits (218), Expect = 5e-18
Identities = 35/62 (56%), Positives = 45/62 (72%)
Frame = +3
Query: 168 PTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYMDDLE 347
P CCF Y R +PR+ +TDY+ETSS CS+ ++F TK G +CANPSDDWVQ+Y+ DL
Sbjct: 34 PAECCFRYITRAIPRHRITDYFETSSQCSRAGIIFITKNGHSICANPSDDWVQDYIKDLR 93
Query: 348 LN 353
N
Sbjct: 94 RN 95
>ref|NP_001003010.1| C-C motif chemokine 5 precursor [Canis lupus familiaris].
Length = 91
Score = 85.9 bits (211), Expect = 3e-17
Identities = 41/78 (52%), Positives = 53/78 (67%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
A F +PA ++P SD T CCF Y +LP V +Y+ TSS CS PAVVF T+K RQVC
Sbjct: 15 ATFRAPASASPYASDT-TPCCFAYISGRLPFTHVQEYFYTSSKCSMPAVVFVTRKHRQVC 73
Query: 300 ANPSDDWVQEYMDDLELN 353
ANP WV+EY++ LE++
Sbjct: 74 ANPQKKWVREYINSLEMS 91
>ref|NP_001005255.1| C-C motif chemokine 8 precursor [Canis lupus familiaris].
Length = 99
Score = 68.9 bits (167), Expect = 4e-12
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYE-TSSLCSQPAVVFQTKKGRQV 296
A+F + L+ P P +CCF+ RK+P + Y T+S C Q AV+F+TK R++
Sbjct: 15 ASFSTFVLAQPDSVSIPITCCFSMVKRKIPMQKLESYMRITNSQCPQEAVIFKTKASREI 74
Query: 297 CANPSDDWVQEYMDDLELN*AALNP 371
CA+P WVQ+YM+ L+ A P
Sbjct: 75 CADPKQKWVQDYMNHLDQKSQAQKP 99
>ref|NP_001005253.1| C-C motif chemokine 26 precursor [Canis lupus familiaris].
Length = 94
Score = 67.8 bits (164), Expect = 8e-12
Identities = 30/60 (50%), Positives = 38/60 (63%)
Frame = +3
Query: 156 GSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYM 335
GSD CCF Y+ + LP ++ Y T S CSQ AV+F TKKG +VCA P + WVQ Y+
Sbjct: 26 GSDVAKFCCFQYSHKILPWKWIQSYKFTRSSCSQQAVIFTTKKGHKVCAQPKEKWVQRYI 85
>ref|NP_001010960.1| C-C motif chemokine 7 [Canis lupus familiaris].
Length = 99
Score = 66.2 bits (160), Expect = 2e-11
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYET-SSLCSQPAVVFQTKKGRQV 296
AA + L+ P G + T+CC+ +T RK+P + Y T SS C + AV+F+TK + V
Sbjct: 15 AALTTQVLTQPDGINISTTCCYRFTTRKIPIQKLKSYRRTTSSYCPREAVIFKTKLAKDV 74
Query: 297 CANPSDDWVQEYMDDLE 347
CA+P+ WVQ++M L+
Sbjct: 75 CADPNQKWVQDHMKYLD 91
>ref|XP_537722.1| PREDICTED: similar to Small inducible cytokine A23 precursor
(CCL23) (Macrophage inflammatory protein 3) (MIP-3)
(Myeloid progenitor inhibitory factor-1) (MPIF-1)
(CK-beta-8) (CKB-8) [Canis familiaris].
Length = 119
Score = 63.9 bits (154), Expect = 1e-10
Identities = 31/70 (44%), Positives = 41/70 (58%)
Frame = +3
Query: 135 PALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSD 314
P + G P CC T RK+ + D+++TSS CS+P ++F+TKKGR VCANP D
Sbjct: 36 PLIQLEAGIHRPADCCPNLTPRKIRCENMQDFFKTSSGCSRPGIIFRTKKGRLVCANPYD 95
Query: 315 DWVQEYMDDL 344
VQ M L
Sbjct: 96 LEVQNCMRSL 105
>ref|XP_537721.2| PREDICTED: similar to Small inducible cytokine A4 precursor (CCL4)
(Macrophage inflammatory protein 1-beta) (MIP-1-beta)
[Canis familiaris].
Length = 94
Score = 63.5 bits (153), Expect = 2e-10
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +3
Query: 177 CCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYMDDLE 347
CC T+ R++ FV Y T C P ++F T KGRQ+CANP+ WVQEY+ L+
Sbjct: 34 CCLTFISRRVSLRFVEGYQRTGDHCLTPGIIFLTHKGRQICANPNVAWVQEYIRHLD 90
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,719,190
Number of extensions: 708713
Number of successful extensions: 3864
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3810
Number of HSP's successfully gapped: 15
Length of query: 222
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 123
Effective length of database: 15,574,240
Effective search space: 1915631520
Effective search space used: 1915631520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004724
(668 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002975.1| C-C motif chemokine 4 isoform 1 precursor [Homo... 147 6e-36
Alignment gi|NP_996890.1| chemokine (C-C motif) ligand 4-like 2 precursor... 146 2e-35
Alignment gi|NP_001001435.1| C-C motif chemokine 4-like precursor [Homo s... 146 2e-35
Alignment gi|NP_001001437.2| C-C motif chemokine 3-like 1 precursor [Homo... 117 7e-27
Alignment gi|NP_066286.1| C-C motif chemokine 3-like 1 precursor [Homo sa... 117 7e-27
Alignment gi|NP_002974.1| C-C motif chemokine 3 precursor [Homo sapiens]. 105 3e-23
Alignment gi|NP_002976.2| C-C motif chemokine 5 precursor [Homo sapiens]. 92 5e-19
Alignment gi|NP_116739.1| C-C motif chemokine 14 isoform 1 precursor [Hom... 92 5e-19
Alignment gi|NP_116738.1| C-C motif chemokine 14 isoform 2 precursor [Hom... 91 1e-18
Alignment gi|NP_002979.1| C-C motif chemokine 18 precursor [Homo sapiens]. 77 1e-14
>ref|NP_002975.1| C-C motif chemokine 4 isoform 1 precursor [Homo sapiens].
Length = 92
Score = 147 bits (372), Expect = 6e-36
Identities = 66/78 (84%), Positives = 73/78 (93%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AAFCSPALSAPMGSDPPT+CCF+YT RKLPRNFV DYYETSSLCSQPAVVFQTK+ +QVC
Sbjct: 15 AAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQTKRSKQVC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
A+PS+ WVQEY+ DLELN
Sbjct: 75 ADPSESWVQEYVYDLELN 92
>ref|NP_996890.1| chemokine (C-C motif) ligand 4-like 2 precursor [Homo sapiens].
Length = 92
Score = 146 bits (368), Expect = 2e-35
Identities = 66/78 (84%), Positives = 73/78 (93%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AAFCS ALSAPMGSDPPT+CCF+YT RKLPRNFV DYYETSSLCSQPAVVFQTK+G+QVC
Sbjct: 15 AAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQTKRGKQVC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
A+PS+ WVQEY+ DLELN
Sbjct: 75 ADPSESWVQEYVYDLELN 92
>ref|NP_001001435.1| C-C motif chemokine 4-like precursor [Homo sapiens].
Length = 92
Score = 146 bits (368), Expect = 2e-35
Identities = 66/78 (84%), Positives = 73/78 (93%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AAFCS ALSAPMGSDPPT+CCF+YT RKLPRNFV DYYETSSLCSQPAVVFQTK+G+QVC
Sbjct: 15 AAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQTKRGKQVC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
A+PS+ WVQEY+ DLELN
Sbjct: 75 ADPSESWVQEYVYDLELN 92
>ref|NP_001001437.2| C-C motif chemokine 3-like 1 precursor [Homo sapiens].
Length = 93
Score = 117 bits (294), Expect = 7e-27
Identities = 47/77 (61%), Positives = 67/77 (87%)
Frame = +3
Query: 123 AFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCA 302
A C+ LSAP+ +D PT+CCF+YT R++P+NF+ DY+ETSS CS+P+V+F TK+GRQVCA
Sbjct: 16 ALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCA 75
Query: 303 NPSDDWVQEYMDDLELN 353
+PS++WVQ+Y+ DLEL+
Sbjct: 76 DPSEEWVQKYVSDLELS 92
>ref|NP_066286.1| C-C motif chemokine 3-like 1 precursor [Homo sapiens].
Length = 93
Score = 117 bits (294), Expect = 7e-27
Identities = 47/77 (61%), Positives = 67/77 (87%)
Frame = +3
Query: 123 AFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCA 302
A C+ LSAP+ +D PT+CCF+YT R++P+NF+ DY+ETSS CS+P+V+F TK+GRQVCA
Sbjct: 16 ALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCA 75
Query: 303 NPSDDWVQEYMDDLELN 353
+PS++WVQ+Y+ DLEL+
Sbjct: 76 DPSEEWVQKYVSDLELS 92
>ref|NP_002974.1| C-C motif chemokine 3 precursor [Homo sapiens].
Length = 92
Score = 105 bits (263), Expect = 3e-23
Identities = 45/79 (56%), Positives = 64/79 (81%), Gaps = 4/79 (5%)
Frame = +3
Query: 129 CSPAL----SAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQV 296
C+ AL SA + +D PT+CCF+YT R++P+NF+ DY+ETSS CS+P V+F TK+ RQV
Sbjct: 13 CTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKPGVIFLTKRSRQV 72
Query: 297 CANPSDDWVQEYMDDLELN 353
CA+PS++WVQ+Y+ DLEL+
Sbjct: 73 CADPSEEWVQKYVSDLELS 91
>ref|NP_002976.2| C-C motif chemokine 5 precursor [Homo sapiens].
Length = 91
Score = 91.7 bits (226), Expect = 5e-19
Identities = 41/77 (53%), Positives = 53/77 (68%)
Frame = +3
Query: 123 AFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCA 302
A C+PA ++P SD T CCF Y R LPR + +Y+ TS CS PAVVF T+K RQVCA
Sbjct: 16 ALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCA 74
Query: 303 NPSDDWVQEYMDDLELN 353
NP WV+EY++ LE++
Sbjct: 75 NPEKKWVREYINSLEMS 91
>ref|NP_116739.1| C-C motif chemokine 14 isoform 1 precursor [Homo sapiens].
Length = 93
Score = 91.7 bits (226), Expect = 5e-19
Identities = 38/70 (54%), Positives = 50/70 (71%)
Frame = +3
Query: 144 SAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWV 323
S+ G P+ CCFTYT K+PR + DYYET+S CS+P +VF TK+G VC NPSD WV
Sbjct: 24 SSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWV 83
Query: 324 QEYMDDLELN 353
Q+Y+ D++ N
Sbjct: 84 QDYIKDMKEN 93
>ref|NP_116738.1| C-C motif chemokine 14 isoform 2 precursor [Homo sapiens].
Length = 109
Score = 90.5 bits (223), Expect = 1e-18
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = +3
Query: 168 PTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYMDDLE 347
P+ CCFTYT K+PR + DYYET+S CS+P +VF TK+G VC NPSD WVQ+Y+ D++
Sbjct: 48 PSECCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMK 107
Query: 348 LN 353
N
Sbjct: 108 EN 109
>ref|NP_002979.1| C-C motif chemokine 18 precursor [Homo sapiens].
Length = 89
Score = 77.4 bits (189), Expect = 1e-14
Identities = 30/59 (50%), Positives = 43/59 (72%)
Frame = +3
Query: 177 CCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYMDDLELN 353
CC YT ++P+ F+ DY ETS C +P V+ TK+GRQ+CA+P+ WVQ+Y+ DL+LN
Sbjct: 30 CCLVYTSWQIPQKFIVDYSETSPQCPKPGVILLTKRGRQICADPNKKWVQKYISDLKLN 88
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,191,480
Number of extensions: 695236
Number of successful extensions: 3891
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 3852
Number of HSP's successfully gapped: 26
Length of query: 222
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 123
Effective length of database: 15,033,728
Effective search space: 1849148544
Effective search space used: 1849148544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004724
(668 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038680.1| C-C motif chemokine 4 [Mus musculus]. 137 7e-33
Alignment gi|NP_035467.1| C-C motif chemokine 3 [Mus musculus]. 109 2e-24
Alignment gi|NP_038681.2| C-C motif chemokine 5 precursor [Mus musculus]. 89 3e-18
Alignment gi|NP_035463.1| C-C motif chemokine 2 [Mus musculus]. 63 2e-10
Alignment gi|NP_035460.1| eotaxin precursor [Mus musculus]. 60 2e-09
Alignment gi|NP_035468.1| C-C motif chemokine 9 precursor [Mus musculus]. 57 9e-09
Alignment gi|XP_003085789.1| PREDICTED: c-C motif chemokine 8-like [Mus m... 57 2e-08
Alignment gi|NP_067418.1| C-C motif chemokine 8 precursor [Mus musculus]. 57 2e-08
Alignment gi|NP_062523.1| C-C motif chemokine 24 precursor [Mus musculus]. 55 5e-08
Alignment gi|NP_033165.1| C-C motif chemokine 6 precursor [Mus musculus]. 52 5e-07
>ref|NP_038680.1| C-C motif chemokine 4 [Mus musculus].
Length = 92
Score = 137 bits (345), Expect = 7e-33
Identities = 61/78 (78%), Positives = 69/78 (88%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AAFC+P SAPMGSDPPTSCCF+YT R+L R+FV DYYETSSLCS+PAVVF TK+GRQ+C
Sbjct: 15 AAFCAPGFSAPMGSDPPTSCCFSYTSRQLHRSFVMDYYETSSLCSKPAVVFLTKRGRQIC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
ANPS+ WV EYM DLELN
Sbjct: 75 ANPSEPWVTEYMSDLELN 92
>ref|NP_035467.1| C-C motif chemokine 3 [Mus musculus].
Length = 92
Score = 109 bits (272), Expect = 2e-24
Identities = 46/75 (61%), Positives = 60/75 (80%)
Frame = +3
Query: 129 CSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANP 308
C+ SAP G+D PT+CCF+Y+ RK+PR F+ DY+ETSSLCSQP V+F TK+ RQ+CA+
Sbjct: 18 CNQVFSAPYGADTPTACCFSYS-RKIPRQFIVDYFETSSLCSQPGVIFLTKRNRQICADS 76
Query: 309 SDDWVQEYMDDLELN 353
+ WVQEY+ DLELN
Sbjct: 77 KETWVQEYITDLELN 91
>ref|NP_038681.2| C-C motif chemokine 5 precursor [Mus musculus].
Length = 91
Score = 89.0 bits (219), Expect = 3e-18
Identities = 43/78 (55%), Positives = 54/78 (69%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AA C+PA ++P GSD T CCF Y LPR V +Y+ TSS CS AVVF T++ RQVC
Sbjct: 15 AALCTPAPASPYGSDT-TPCCFAYLSLALPRAHVKEYFYTSSKCSNLAVVFVTRRNRQVC 73
Query: 300 ANPSDDWVQEYMDDLELN 353
ANP WVQEY++ LE++
Sbjct: 74 ANPEKKWVQEYINYLEMS 91
>ref|NP_035463.1| C-C motif chemokine 2 [Mus musculus].
Length = 148
Score = 63.2 bits (152), Expect = 2e-10
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 LSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYE-TSSLCSQPAVVFQTKKGRQVCANPSDD 317
L+ P + P +CC+++T + +P + + Y TSS C + AVVF TK R+VCA+P +
Sbjct: 22 LAQPDAVNAPLTCCYSFTSKMIPMSRLESYKRITSSRCPKEAVVFVTKLKREVCADPKKE 81
Query: 318 WVQEYMDDLELN 353
WVQ Y+ +L+ N
Sbjct: 82 WVQTYIKNLDRN 93
>ref|NP_035460.1| eotaxin precursor [Mus musculus].
Length = 97
Score = 59.7 bits (143), Expect = 2e-09
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 123 AFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYE-TSSLCSQPAVVFQTKKGRQVC 299
+F S L+ P PTSCCF T +K+P + Y T++ C+ A+VF+T+ G+++C
Sbjct: 16 SFTSQVLAHP--GSIPTSCCFIMTSKKIPNTLLKSYKRITNNRCTLKAIVFKTRLGKEIC 73
Query: 300 ANPSDDWVQEYMDDLE 347
A+P WVQ+ L+
Sbjct: 74 ADPKKKWVQDATKHLD 89
>ref|NP_035468.1| C-C motif chemokine 9 precursor [Mus musculus].
Length = 122
Score = 57.4 bits (137), Expect = 9e-09
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = +3
Query: 153 MGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEY 332
MG + CC +Y R F+ Y+ TS C++P ++F +K+G QVCANPSD VQ
Sbjct: 49 MGFQDSSDCCLSYNSRIQCSRFI-GYFPTSGGCTRPGIIFISKRGFQVCANPSDRRVQRC 107
Query: 333 MDDLELN 353
++ LE N
Sbjct: 108 IERLEQN 114
>ref|XP_003085789.1| PREDICTED: c-C motif chemokine 8-like [Mus musculus].
Length = 97
Score = 56.6 bits (135), Expect = 2e-08
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 168 PTSCCFTYTVRKLPRNFVTDYYETSSL-CSQPAVVFQTKKGRQVCANPSDDWVQEYMDDL 344
P +CCF K+P + Y +++ C AVVFQTK+G +C +P+ WV EYM+ L
Sbjct: 29 PVTCCFHVLKLKIPLRVLKSYERINNIQCPMEAVVFQTKQGMSLCVDPTQKWVSEYMEIL 88
Query: 345 ELN*AALNP 371
+ L P
Sbjct: 89 DQKSQILQP 97
>ref|NP_067418.1| C-C motif chemokine 8 precursor [Mus musculus].
Length = 97
Score = 56.6 bits (135), Expect = 2e-08
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 168 PTSCCFTYTVRKLPRNFVTDYYETSSL-CSQPAVVFQTKKGRQVCANPSDDWVQEYMDDL 344
P +CCF K+P + Y +++ C AVVFQTK+G +C +P+ WV EYM+ L
Sbjct: 29 PVTCCFHVLKLKIPLRVLKSYERINNIQCPMEAVVFQTKQGMSLCVDPTQKWVSEYMEIL 88
Query: 345 ELN*AALNP 371
+ L P
Sbjct: 89 DQKSQILQP 97
>ref|NP_062523.1| C-C motif chemokine 24 precursor [Mus musculus].
Length = 119
Score = 55.1 bits (131), Expect = 5e-08
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 168 PTSCCFTYTVRKLPRNFVTDYY-ETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYMDDL 344
P+SCC ++ +K+P N V Y S+C + V+F TKKG ++C +P WVQ ++ L
Sbjct: 30 PSSCCTSFISKKIPENRVVSYQLANGSICPKAGVIFITKKGHKICTDPKLLWVQRHIQKL 89
Query: 345 E 347
+
Sbjct: 90 D 90
>ref|NP_033165.1| C-C motif chemokine 6 precursor [Mus musculus].
Length = 116
Score = 51.6 bits (122), Expect = 5e-07
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +3
Query: 162 DPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYMDD 341
D + CCF+Y + + F+ Y+ TS C +P ++F +++G QVCA+PSD VQ +
Sbjct: 45 DTSSDCCFSYATQIPCKRFIY-YFPTSGGCIKPGIIFISRRGTQVCADPSDRRVQRCLST 103
Query: 342 LE 347
L+
Sbjct: 104 LK 105
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,334,077
Number of extensions: 585301
Number of successful extensions: 3047
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 2997
Number of HSP's successfully gapped: 23
Length of query: 222
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 125
Effective length of database: 12,704,067
Effective search space: 1588008375
Effective search space used: 1588008375
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004724
(668 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998944.1| C-C motif chemokine 4 precursor [Sus scrofa]. 169 1e-42
Alignment gi|NP_001009579.1| C-C motif chemokine 3-like 1 [Sus scrofa]. 126 1e-29
Alignment gi|XP_003131759.2| PREDICTED: c-C motif chemokine 3-like [Sus s... 96 2e-20
Alignment gi|NP_001123418.1| C-C motif chemokine 5 [Sus scrofa]. 91 6e-19
Alignment gi|XP_003131761.2| PREDICTED: c-C motif chemokine 14-like [Sus ... 82 3e-16
Alignment gi|XP_003358198.1| PREDICTED: c-C motif chemokine 23-like [Sus ... 74 7e-14
Alignment gi|XP_003131760.1| PREDICTED: c-C motif chemokine 23-like [Sus ... 74 7e-14
Alignment gi|XP_003131762.2| PREDICTED: LOW QUALITY PROTEIN: c-C motif ch... 68 4e-12
Alignment gi|NP_001072133.1| chemokine ligand 26-like protein [Sus scrofa]. 67 1e-11
Alignment gi|NP_999379.1| C-C motif chemokine 2 precursor [Sus scrofa]. 64 7e-11
>ref|NP_998944.1| C-C motif chemokine 4 precursor [Sus scrofa].
Length = 92
Score = 169 bits (428), Expect = 1e-42
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC
Sbjct: 15 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 74
Query: 300 ANPSDDWVQEYMDDLELN 353
ANPSDDWVQEYMDDLELN
Sbjct: 75 ANPSDDWVQEYMDDLELN 92
>ref|NP_001009579.1| C-C motif chemokine 3-like 1 [Sus scrofa].
Length = 93
Score = 126 bits (316), Expect = 1e-29
Identities = 54/77 (70%), Positives = 64/77 (83%)
Frame = +3
Query: 123 AFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCA 302
A CS SAP+G+D PT+CCF+YT R+LPR FV DY+ETSS CS+P V+FQTKKGR+VCA
Sbjct: 16 ALCSQVFSAPLGADTPTACCFSYTSRQLPRKFVADYFETSSQCSKPGVIFQTKKGREVCA 75
Query: 303 NPSDDWVQEYMDDLELN 353
NP D WVQEY+ DLELN
Sbjct: 76 NPEDAWVQEYISDLELN 92
>ref|XP_003131759.2| PREDICTED: c-C motif chemokine 3-like [Sus scrofa].
Length = 85
Score = 95.9 bits (237), Expect = 2e-20
Identities = 38/62 (61%), Positives = 49/62 (79%)
Frame = +3
Query: 168 PTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYMDDLE 347
P CC YT R++PR V DYY+TSS CS+P ++FQTKKGRQ+CANP + WVQEY+ DL+
Sbjct: 23 PPDCCLAYTTRRIPRKLVQDYYKTSSYCSKPGIIFQTKKGRQICANPEEAWVQEYIIDLK 82
Query: 348 LN 353
L+
Sbjct: 83 LS 84
>ref|NP_001123418.1| C-C motif chemokine 5 [Sus scrofa].
Length = 91
Score = 90.9 bits (224), Expect = 6e-19
Identities = 43/78 (55%), Positives = 55/78 (70%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVC 299
AA C+PA ++P SD T CCF+Y R LPR + +Y+ TSS CS AVVF T+K RQVC
Sbjct: 15 AALCAPASASPYASDT-TPCCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVC 73
Query: 300 ANPSDDWVQEYMDDLELN 353
ANP WV+EY++ LEL+
Sbjct: 74 ANPEKKWVREYINSLELS 91
>ref|XP_003131761.2| PREDICTED: c-C motif chemokine 14-like [Sus scrofa].
Length = 99
Score = 81.6 bits (200), Expect = 3e-16
Identities = 33/60 (55%), Positives = 44/60 (73%)
Frame = +3
Query: 168 PTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYMDDLE 347
PT CCFT+ R +PR ++ YYETSS C +P ++F T GR VCANP DDWVQ+Y+ +L+
Sbjct: 38 PTDCCFTHLTRAIPRERISSYYETSSQCPKPGIIFITIIGRFVCANPRDDWVQDYIKELK 97
>ref|XP_003358198.1| PREDICTED: c-C motif chemokine 23-like [Sus scrofa].
Length = 129
Score = 73.9 bits (180), Expect = 7e-14
Identities = 40/96 (41%), Positives = 53/96 (55%)
Frame = +3
Query: 156 GSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYM 335
G P CCF+YT RK+ + DY T+S CS+PAV+F TKKG++VC NP D+ VQ+ M
Sbjct: 37 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 96
Query: 336 DDLELN*AALNPGKVSSRESHLSPTLLSKTHLLETP 443
+L K++S L LL K H P
Sbjct: 97 SEL----------KLTSTIKDLKSILLKKEHFWPRP 122
>ref|XP_003131760.1| PREDICTED: c-C motif chemokine 23-like [Sus scrofa].
Length = 129
Score = 73.9 bits (180), Expect = 7e-14
Identities = 40/96 (41%), Positives = 53/96 (55%)
Frame = +3
Query: 156 GSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYM 335
G P CCF+YT RK+ + DY T+S CS+PAV+F TKKG++VC NP D+ VQ+ M
Sbjct: 37 GFHRPADCCFSYTPRKIQCVNMKDYTLTTSECSKPAVIFLTKKGQRVCTNPDDEQVQKCM 96
Query: 336 DDLELN*AALNPGKVSSRESHLSPTLLSKTHLLETP 443
+L K++S L LL K H P
Sbjct: 97 SEL----------KLTSTIKDLKSILLKKEHFWPRP 122
>ref|XP_003131762.2| PREDICTED: LOW QUALITY PROTEIN: c-C motif chemokine 16-like [Sus
scrofa].
Length = 148
Score = 68.2 bits (165), Expect = 4e-12
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +3
Query: 162 DPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWVQEYMDD 341
+PP +CC TY + LPR V Y + + C PA++F TK+ R++C NP D WVQ+Y+ D
Sbjct: 32 NPPPTCCLTYHEKVLPRKLVVGYKKAFN-CHLPAIIFITKRNREICTNPDDKWVQKYIKD 90
Query: 342 LELN 353
+L+
Sbjct: 91 PKLS 94
>ref|NP_001072133.1| chemokine ligand 26-like protein [Sus scrofa].
Length = 94
Score = 66.6 bits (161), Expect = 1e-11
Identities = 31/68 (45%), Positives = 42/68 (61%)
Frame = +3
Query: 144 SAPMGSDPPTSCCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDWV 323
+A G D CCF Y+ + LP +V Y T + CSQ AV+F TKKG +VCA P + WV
Sbjct: 22 TATRGIDVAKFCCFQYSHKILPWRWVNTYEFTRNSCSQQAVIFTTKKGHKVCAKPQETWV 81
Query: 324 QEYMDDLE 347
Q+Y+ L+
Sbjct: 82 QKYISLLK 89
>ref|NP_999379.1| C-C motif chemokine 2 precursor [Sus scrofa].
Length = 99
Score = 63.9 bits (154), Expect = 7e-11
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +3
Query: 120 AAFCSPALSAPMGSDPPTSCCFTYTVRKLPRNFVTDYYE-TSSLCSQPAVVFQTKKGRQV 296
A FC+ L+ P + P +CC+T T +K+ + Y TSS C + AV+F+T G+++
Sbjct: 15 ATFCTQVLAQPDAINSPVTCCYTLTSKKISMQRLMSYRRVTSSKCPKEAVIFKTIAGKEI 74
Query: 297 CANPSDDWVQEYMDDLE 347
CA P WVQ+ + L+
Sbjct: 75 CAEPKQKWVQDSISHLD 91
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,933,092
Number of extensions: 447113
Number of successful extensions: 2418
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2380
Number of HSP's successfully gapped: 17
Length of query: 222
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 127
Effective length of database: 8,978,717
Effective search space: 1140297059
Effective search space used: 1140297059
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004724
(668 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 716 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 716 bits (361), Expect = 0.0
Identities = 383/394 (97%)
Strand = Plus / Minus
Query: 269 attccagaccaaaaagggcaggcaggtctgcgccaaccccagtgatgactgggtccagga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41048749 attccagaccaaaaagggcaggcaggtctgcgccaaccccagtgatgactgggtccagga 41048690
Query: 329 gtacatggatgacctggaactgaactgagctgctctgaacccggggaaggtgtcctccag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41048689 gtacatggatgacctggaactgaactgagctgctctgaacccggggaaggtgtcctccag 41048630
Query: 389 ggaaagtcacctgagcccgacgcttctcagcaagacgcaccttctcgagactcctgactc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41048629 ggaaagtcacctgagcccgacgcttctcagcaagacgcaccttctcgagactcctgactc 41048570
Query: 449 cgctcagtagtcgctattccttttcctaacttaatctgtattacatgctgtgttgctgta 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41048569 cgctcagtagtcgctattccttttcctaacttaatctgtattacatgctgtgttgctgta 41048510
Query: 509 tttggtgttctttccccttatttatgcnnnnnnnnnnnaacccaaggacatttgtccccc 568
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 41048509 tttggtgttctttccccttatttatgctttttttttttaacccaaggacatttgtccccc 41048450
Query: 569 atggggatggtccaccatcactatttctctgctattgtagatacacggataatgcccttg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41048449 atggggatggtccaccatcactatttctctgctattgtagatacacggataatgcccttg 41048390
Query: 629 attccaagtgttttcataataaaacctttaaaaa 662
||||||||||||||||||||||||||||||||||
Sbjct: 41048389 attccaagtgttttcataataaaacctttaaaaa 41048356
Score = 301 bits (152), Expect = 3e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 2 acagaacacaggagggttctgaagcttctgggtcctctcctctgagctccgggcaagtct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41050039 acagaacacaggagggttctgaagcttctgggtcctctcctctgagctccgggcaagtct 41049980
Query: 62 ctcctccgccaagaccatgaagctctgcgtgactgtcctctccctcctggtcctggtcgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41049979 ctcctccgccaagaccatgaagctctgcgtgactgtcctctccctcctggtcctggtcgc 41049920
Query: 122 tgccttctgctctccagcgctctcagcaccaa 153
||||||||||||||||||||||||||||||||
Sbjct: 41049919 tgccttctgctctccagcgctctcagcaccaa 41049888
Score = 194 bits (98), Expect = 4e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 171 acctcctgctgcttcacatacaccgtgcggaagcttcctcgcaacttcgtgactgattac 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41049402 acctcctgctgcttcacatacaccgtgcggaagcttcctcgcaacttcgtgactgattac 41049343
Query: 231 tatgagaccagcagcctctgctcccagccagccgtggt 268
||||||||||||||||||||||||||||||||||||||
Sbjct: 41049342 tatgagaccagcagcctctgctcccagccagccgtggt 41049305
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,352,969
Number of extensions: 564
Number of successful extensions: 564
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 4
Length of query: 668
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 647
Effective length of database: 2,808,413,156
Effective search space: 1817043311932
Effective search space used: 1817043311932
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)