Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004800
(1145 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039338.1| leucine-rich repeat-containing protein 41 [B... 624 e-179
>ref|NP_001039338.1| leucine-rich repeat-containing protein 41 [Bos taurus].
Length = 814
Score = 624 bits (1609), Expect = e-179
Identities = 323/381 (84%), Positives = 329/381 (86%)
Frame = +2
Query: 2 VFIVAXXXXXXXXXXXXXVACGALGGSEPGCLGLPALEAAQRFRSISTLELFTVPLSTEA 181
VFIVA VACGAL GS+P CLGLPALEA+QRFRSISTLELFTVPLSTEA
Sbjct: 419 VFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEA 478
Query: 182 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 361
ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALS QAGCRLRALHLSDLFSPLPI
Sbjct: 479 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSVQAGCRLRALHLSDLFSPLPI 538
Query: 362 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPSHIVGDEEIPENCLEQLEMGF 541
LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPS+++GDEEIPENCLEQLEMGF
Sbjct: 539 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPSNVIGDEEIPENCLEQLEMGF 598
Query: 542 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL 721
PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNL LKRLSFHDMNL
Sbjct: 599 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLTLKRLSFHDMNL 658
Query: 722 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTXXXXXXXXXXXXX 901
ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNST
Sbjct: 659 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGN 718
Query: 902 XXXXXXXDVFSEXXXXXXXXXXXXXNCIKPDGLLEFAKKLERWGRGAFGHLRLFQNWLGX 1081
DVFSE NCIKPDGLLEFAK+LERWGRGAFGHLRLFQNWL
Sbjct: 719 AGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLDQ 778
Query: 1082 DAVTAREAIRRLRATCHVVSD 1144
DAVTAREAIRRLRATCHVVSD
Sbjct: 779 DAVTAREAIRRLRATCHVVSD 799
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,915,900
Number of extensions: 1767747
Number of successful extensions: 9455
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9296
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 277
Effective length of database: 14,240,222
Effective search space: 3944541494
Effective search space used: 3944541494
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004800
(1145 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861159.1| PREDICTED: similar to MUF1 protein isoform 3 [C... 629 e-180
Alignment gi|XP_850297.1| PREDICTED: similar to MUF1 protein isoform 1 [C... 629 e-180
Alignment gi|XP_861099.1| PREDICTED: similar to MUF1 protein isoform 2 [C... 123 3e-28
>ref|XP_861159.1| PREDICTED: similar to MUF1 protein isoform 3 [Canis familiaris].
Length = 643
Score = 629 bits (1622), Expect = e-180
Identities = 326/381 (85%), Positives = 330/381 (86%)
Frame = +2
Query: 2 VFIVAXXXXXXXXXXXXXVACGALGGSEPGCLGLPALEAAQRFRSISTLELFTVPLSTEA 181
VFIVA VACGAL GS+P CLGLPALEA+QRFRSISTLELFTVPLSTEA
Sbjct: 248 VFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEA 307
Query: 182 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 361
ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI
Sbjct: 308 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 367
Query: 362 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPSHIVGDEEIPENCLEQLEMGF 541
LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGP SHI+GDEEIPENCLEQLEMGF
Sbjct: 368 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPTSHIIGDEEIPENCLEQLEMGF 427
Query: 542 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL 721
PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL
Sbjct: 428 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL 487
Query: 722 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTXXXXXXXXXXXXX 901
ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNST
Sbjct: 488 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGN 547
Query: 902 XXXXXXXDVFSEXXXXXXXXXXXXXNCIKPDGLLEFAKKLERWGRGAFGHLRLFQNWLGX 1081
DVFSE NCIKPDGLLEFAK+LERWGRGAFGHLRLFQNWL
Sbjct: 548 AGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLDQ 607
Query: 1082 DAVTAREAIRRLRATCHVVSD 1144
DAVTAREAIRRLRATCHVVSD
Sbjct: 608 DAVTAREAIRRLRATCHVVSD 628
>ref|XP_850297.1| PREDICTED: similar to MUF1 protein isoform 1 [Canis familiaris].
Length = 814
Score = 629 bits (1622), Expect = e-180
Identities = 326/381 (85%), Positives = 330/381 (86%)
Frame = +2
Query: 2 VFIVAXXXXXXXXXXXXXVACGALGGSEPGCLGLPALEAAQRFRSISTLELFTVPLSTEA 181
VFIVA VACGAL GS+P CLGLPALEA+QRFRSISTLELFTVPLSTEA
Sbjct: 419 VFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEA 478
Query: 182 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 361
ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI
Sbjct: 479 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 538
Query: 362 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPSHIVGDEEIPENCLEQLEMGF 541
LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGP SHI+GDEEIPENCLEQLEMGF
Sbjct: 539 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPTSHIIGDEEIPENCLEQLEMGF 598
Query: 542 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL 721
PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL
Sbjct: 599 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL 658
Query: 722 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTXXXXXXXXXXXXX 901
ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNST
Sbjct: 659 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGN 718
Query: 902 XXXXXXXDVFSEXXXXXXXXXXXXXNCIKPDGLLEFAKKLERWGRGAFGHLRLFQNWLGX 1081
DVFSE NCIKPDGLLEFAK+LERWGRGAFGHLRLFQNWL
Sbjct: 719 AGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLDQ 778
Query: 1082 DAVTAREAIRRLRATCHVVSD 1144
DAVTAREAIRRLRATCHVVSD
Sbjct: 779 DAVTAREAIRRLRATCHVVSD 799
>ref|XP_861099.1| PREDICTED: similar to MUF1 protein isoform 2 [Canis familiaris].
Length = 115
Score = 123 bits (309), Expect = 3e-28
Identities = 64/100 (64%), Positives = 65/100 (65%)
Frame = +2
Query: 845 MKGNSTXXXXXXXXXXXXXXXXXXXXDVFSEXXXXXXXXXXXXXNCIKPDGLLEFAKKLE 1024
MKGNST DVFSE NCIKPDGLLEFAK+LE
Sbjct: 1 MKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLE 60
Query: 1025 RWGRGAFGHLRLFQNWLGXDAVTAREAIRRLRATCHVVSD 1144
RWGRGAFGHLRLFQNWL DAVTAREAIRRLRATCHVVSD
Sbjct: 61 RWGRGAFGHLRLFQNWLDQDAVTAREAIRRLRATCHVVSD 100
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,870,291
Number of extensions: 1801602
Number of successful extensions: 9778
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9580
Number of HSP's successfully gapped: 3
Length of query: 381
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 276
Effective length of database: 15,374,224
Effective search space: 4243285824
Effective search space used: 4243285824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004800
(1145 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006360.3| leucine-rich repeat-containing protein 41 [Homo... 630 0.0
>ref|NP_006360.3| leucine-rich repeat-containing protein 41 [Homo sapiens].
Length = 812
Score = 630 bits (1626), Expect = 0.0
Identities = 326/381 (85%), Positives = 330/381 (86%)
Frame = +2
Query: 2 VFIVAXXXXXXXXXXXXXVACGALGGSEPGCLGLPALEAAQRFRSISTLELFTVPLSTEA 181
VFIVA VACGAL GS+P CLGLPALEA+QRFRSISTLELFTVPLSTEA
Sbjct: 417 VFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEA 476
Query: 182 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 361
ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI
Sbjct: 477 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 536
Query: 362 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPSHIVGDEEIPENCLEQLEMGF 541
LELTRAIVRALPLLRVLSIRVDHPSQRDNP VPGNAGPPSHI+GDEEIPENCLEQLEMGF
Sbjct: 537 LELTRAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGDEEIPENCLEQLEMGF 596
Query: 542 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL 721
PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL
Sbjct: 597 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL 656
Query: 722 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTXXXXXXXXXXXXX 901
ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNST
Sbjct: 657 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGN 716
Query: 902 XXXXXXXDVFSEXXXXXXXXXXXXXNCIKPDGLLEFAKKLERWGRGAFGHLRLFQNWLGX 1081
DVFSE NCIKPDGLLEFAK+LERWGRGAFGHLRLFQNWL
Sbjct: 717 AGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLDQ 776
Query: 1082 DAVTAREAIRRLRATCHVVSD 1144
DAVTAREAIRRLRATCHVVSD
Sbjct: 777 DAVTAREAIRRLRATCHVVSD 797
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,815,349
Number of extensions: 1757252
Number of successful extensions: 9183
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9052
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 277
Effective length of database: 14,868,908
Effective search space: 4118687516
Effective search space used: 4118687516
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004800
(1145 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_705741.2| leucine-rich repeat-containing protein 41 [Mus ... 622 e-178
>ref|NP_705741.2| leucine-rich repeat-containing protein 41 [Mus musculus].
Length = 785
Score = 622 bits (1603), Expect = e-178
Identities = 322/381 (84%), Positives = 328/381 (86%)
Frame = +2
Query: 2 VFIVAXXXXXXXXXXXXXVACGALGGSEPGCLGLPALEAAQRFRSISTLELFTVPLSTEA 181
VFIVA VACGAL GS+P CLGLPALEA+QRFRSISTLELFTVPLSTEA
Sbjct: 390 VFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEA 449
Query: 182 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 361
ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI
Sbjct: 450 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 509
Query: 362 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPSHIVGDEEIPENCLEQLEMGF 541
LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVP NAGPP HIVGDEEIPENCLEQLEMGF
Sbjct: 510 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPENAGPPGHIVGDEEIPENCLEQLEMGF 569
Query: 542 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL 721
PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKE+NL+LKRLSFHDMNL
Sbjct: 570 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEHNLSLKRLSFHDMNL 629
Query: 722 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTXXXXXXXXXXXXX 901
ADCQSEVLFLL+NLTLQEITFSFCRLFEKRP QFLPEMVAAMKGNST
Sbjct: 630 ADCQSEVLFLLKNLTLQEITFSFCRLFEKRPVQFLPEMVAAMKGNSTLKGLRLPGNRLGN 689
Query: 902 XXXXXXXDVFSEXXXXXXXXXXXXXNCIKPDGLLEFAKKLERWGRGAFGHLRLFQNWLGX 1081
DVFSE NCIKPDGLLEFAK+LERWGRGAFGHLRLFQNWL
Sbjct: 690 AGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLDQ 749
Query: 1082 DAVTAREAIRRLRATCHVVSD 1144
DAVTAREAIRRLRATCHVVSD
Sbjct: 750 DAVTAREAIRRLRATCHVVSD 770
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,427,195
Number of extensions: 1434845
Number of successful extensions: 7176
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7066
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 278
Effective length of database: 12,523,851
Effective search space: 3481630578
Effective search space used: 3481630578
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004800
(1145 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128072.1| PREDICTED: leucine-rich repeat-containing pr... 640 0.0
>ref|XP_003128072.1| PREDICTED: leucine-rich repeat-containing protein 41 [Sus scrofa].
Length = 813
Score = 640 bits (1650), Expect = 0.0
Identities = 332/381 (87%), Positives = 333/381 (87%)
Frame = +2
Query: 2 VFIVAXXXXXXXXXXXXXVACGALGGSEPGCLGLPALEAAQRFRSISTLELFTVPLSTEA 181
VFIVA VACGALGGSEPGCLGLPALEAAQRFRSISTLELFTVPLSTEA
Sbjct: 418 VFIVAGEKEDGEEMEIGEVACGALGGSEPGCLGLPALEAAQRFRSISTLELFTVPLSTEA 477
Query: 182 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 361
ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI
Sbjct: 478 ALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPI 537
Query: 362 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPSHIVGDEEIPENCLEQLEMGF 541
LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPSHIVGDEEIPENCLEQLEMGF
Sbjct: 538 LELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGPPSHIVGDEEIPENCLEQLEMGF 597
Query: 542 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL 721
PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL
Sbjct: 598 PRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNL 657
Query: 722 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTXXXXXXXXXXXXX 901
ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNST
Sbjct: 658 ADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGN 717
Query: 902 XXXXXXXDVFSEXXXXXXXXXXXXXNCIKPDGLLEFAKKLERWGRGAFGHLRLFQNWLGX 1081
DVFSE NCIKPDGLLEFAK+LERWGRGAFGHLRLFQNWL
Sbjct: 718 AGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLDQ 777
Query: 1082 DAVTAREAIRRLRATCHVVSD 1144
DAVTAREAIRRLRATCHVVSD
Sbjct: 778 DAVTAREAIRRLRATCHVVSD 798
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,953,548
Number of extensions: 1147260
Number of successful extensions: 6446
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6287
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 280
Effective length of database: 8,829,335
Effective search space: 2472213800
Effective search space used: 2472213800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004800
(1145 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 519 e-144
>Sscrofa_Chr06
|| Length = 157765593
Score = 519 bits (262), Expect = e-144
Identities = 262/262 (100%)
Strand = Plus / Plus
Query: 248 ggcctgggctctaatatcttccgcctgctggacagcctgcgggctctgtcaggccaggct 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152633467 ggcctgggctctaatatcttccgcctgctggacagcctgcgggctctgtcaggccaggct 152633526
Query: 308 ggatgccgtctccgggccctacatctcagtgatctgttctcaccactgcccattctggag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152633527 ggatgccgtctccgggccctacatctcagtgatctgttctcaccactgcccattctggag 152633586
Query: 368 ctgacacgtgccattgtgcgagccctgcccctgctacgggtcctctccattcgtgttgac 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152633587 ctgacacgtgccattgtgcgagccctgcccctgctacgggtcctctccattcgtgttgac 152633646
Query: 428 caccccagccagagggacaaccctgctgtgccggggaatgcagggccccctagccacata 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152633647 caccccagccagagggacaaccctgctgtgccggggaatgcagggccccctagccacata 152633706
Query: 488 gttggggatgaggagataccag 509
||||||||||||||||||||||
Sbjct: 152633707 gttggggatgaggagataccag 152633728
Score = 484 bits (244), Expect = e-134
Identities = 247/248 (99%)
Strand = Plus / Plus
Query: 2 gttttcattgtggcgggtgagaaggaggatggggaagagatggagatcggggaagtggcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152628852 gttttcattgtggcgggtgagaaggaggatggggaagagatggagatcggggaagtggcc 152628911
Query: 62 tgtggcgctctgggtggatccgagcccggctgcctggggctcccagcgctggaggcggcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152628912 tgtggcgctctgggtggatccgagcccggctgcctggggctcccagcgctggaggcggcc 152628971
Query: 122 cagaggttccgcagcatctccaccttggagctcttcacggttcccctctccacagaggcg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152628972 cagaggttccgcagcatctccaccttggagctcttcacggttcccctctccacagaggcg 152629031
Query: 182 gctctgacgctgtgccacctgctaagctcctgggtgtccctggagagcctcacactttcc 241
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 152629032 gctctgacgctgtgccacctgctaagctcctgggtgtctctggagagcctcacactttcc 152629091
Query: 242 tataatgg 249
||||||||
Sbjct: 152629092 tataatgg 152629099
Score = 327 bits (165), Expect = 8e-87
Identities = 168/169 (99%)
Strand = Plus / Plus
Query: 506 ccagaaaactgcctggaacaattggagatgggatttccacggggagcccagccagcccca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152634245 ccagaaaactgcctggaacaattggagatgggatttccacggggagcccagccagcccca 152634304
Query: 566 ctgctctgctctgtactgaaggcctcaggttctctgcagcagctgtccctggacagcgcc 625
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152634305 ctgctctgctctgtactaaaggcctcaggttctctgcagcagctgtccctggacagcgcc 152634364
Query: 626 acctttgcctctccccaggactttgggcttgtgttacagacactcaaag 674
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152634365 acctttgcctctccccaggactttgggcttgtgttacagacactcaaag 152634413
Score = 311 bits (157), Expect = 5e-82
Identities = 171/176 (97%)
Strand = Plus / Plus
Query: 970 cagttccaactgcatcaagccagacgggcttctggagttcgccaaaaagctagagcgctg 1029
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 152635644 cagttccaactgcatcaagccagacgggcttctggagttcgccaagaggctagagcgctg 152635703
Query: 1030 gggccgtggagcctttggtcacctgcgtctcttccagaactggctgggacangatgcagt 1089
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 152635704 gggccgtggagcctttggtcacctgcgtctcttccagaactggctggaccaggatgcagt 152635763
Query: 1090 cacagccagggaagccatccgacggctccgggccacctgccatgtggttagcgact 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152635764 cacagccagggaagccatccgacggctccgggccacctgccatgtggttagcgact 152635819
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 772 agagattaccttctccttctgccgcctgttcgagaagcgcccagcccagtttctgcctga 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152635119 agagattaccttctccttctgccgcctgttcgagaagcgcccagcccagtttctgcctga 152635178
Query: 832 gatggttgctgctatgaagggcaactccacactgaagggcctccggctgccagggaaccg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152635179 gatggttgctgctatgaagggcaactccacactgaagggcctccggctgccagggaaccg 152635238
Query: 892 cctggg 897
||||||
Sbjct: 152635239 cctggg 152635244
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 673 agagtacaacctcgccctgaagaggctgagcttccatgacatgaacctggctgactgtca 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152634497 agagtacaacctcgccctgaagaggctgagcttccatgacatgaacctggctgactgtca 152634556
Query: 733 gagcgaggtgctcttcttgctccagaatttgactcttcaag 773
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 152634557 gagcgaggtgctcttcttgctccagaatttgactcttcaag 152634597
Score = 145 bits (73), Expect = 6e-32
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 896 ggaaacgctggcctgctggccctggcagatgttttctcagaagactcatcctcctccctg 955
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 152635454 ggaaacgctggcctgctggccctggcagatgtcttctcagaagactcatcctcctccctg 152635513
Query: 956 tgtcagctggatatcag 972
|||||||||||||||||
Sbjct: 152635514 tgtcagctggatatcag 152635530
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,514,593
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 7
Length of query: 1145
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1124
Effective length of database: 2,808,413,156
Effective search space: 3156656387344
Effective search space used: 3156656387344
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)