Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004863
(1275 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068734.1| peroxisomal membrane protein 11B [Bos taurus]. 410 e-114
Alignment gi|NP_001069189.1| peroxisomal membrane protein 11A [Bos taurus]. 174 1e-43
Alignment gi|XP_002699103.1| PREDICTED: peroxisomal membrane protein 11A-... 171 2e-42
Alignment gi|XP_875617.1| PREDICTED: peroxisomal membrane protein 11A-lik... 171 2e-42
Alignment gi|NP_001180185.1| peroxisomal membrane protein 11C [Bos taurus]. 53 5e-07
Alignment gi|XP_002688897.1| PREDICTED: peroxisomal biogenesis factor 11 ... 53 5e-07
>ref|NP_001068734.1| peroxisomal membrane protein 11B [Bos taurus].
Length = 258
Score = 410 bits (1053), Expect = e-114
Identities = 211/259 (81%), Positives = 211/259 (81%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR
Sbjct: 1 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGL PRVDQEKWA
Sbjct: 61 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLK
Sbjct: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLK-GSGGVSGGIEPGGPGGPGIPG 179
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
LPQVALK GHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
Sbjct: 180 GGLPQVALKLRLRVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 239
Query: 747 VXXXXXXXXXXCPWLRLKP 803
V CPWLRLKP
Sbjct: 240 VSSILSILTLICPWLRLKP 258
>ref|NP_001069189.1| peroxisomal membrane protein 11A [Bos taurus].
Length = 247
Score = 174 bits (442), Expect = 1e-43
Identities = 95/258 (36%), Positives = 146/258 (56%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDA++RF+ Q+Q R+RL RA QY C LL + L+ + ++ ++++LE +S GRK R
Sbjct: 1 MDAFIRFTNQTQGRDRLFRATQYTCMLLRYLLEPKADNEKVVMKLKKLESSVSTGRKWFR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGN AL++ +++V +D+V R C+T++ LNR +YF CD VL+ +GL V++EKW
Sbjct: 61 LGNVVHALQATQQSVRATDLVPRICLTLASLNRVIYFICDTVLFVRSTGLASGVNKEKWR 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
+ + RYY +SL+++L RD YE+ L M+Q + ++R K
Sbjct: 121 RWAARYYYYSLLLSLVRDLYEVSLQMKQVAHDRAKREKSPSQDTLGYSVADEETEWLQSL 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
L +LK HPPL LD V+N CD+ PLD+LG+++ PGI+GL GL
Sbjct: 181 LLLLFHSLK-------------RHPPLFLDTVKNFCDILNPLDQLGIYKSNPGIIGLGGL 227
Query: 747 VXXXXXXXXXXCPWLRLK 800
V P ++LK
Sbjct: 228 VSSVAGIITVAYPQMKLK 245
>ref|XP_002699103.1| PREDICTED: peroxisomal membrane protein 11A-like [Bos taurus].
Length = 247
Score = 171 bits (432), Expect = 2e-42
Identities = 94/258 (36%), Positives = 146/258 (56%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDA++RF+ Q+Q R+RL RA QY C+LL + L+ + ++ ++++LE +S GRK R
Sbjct: 1 MDAFIRFTNQTQGRDRLFRATQYTCTLLRYLLEPKADNEKVVMKLKKLESSVSTGRKWFR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGN AL++ +++V +D+V R C+TV+ LNR +YF D VL+ +GL V++EKW
Sbjct: 61 LGNVVHALQATQQSVRATDLVPRICLTVASLNRVIYFIRDTVLFVRSTGLASGVNKEKWR 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
+ + RYY +SL+++L RD YE+ L ++Q + ++R K
Sbjct: 121 RWAARYYYYSLLLSLVRDLYEVSLQLKQVAHDRAKREKSPSQDTLGYSVADDETEWLQSL 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
L +LK HPPL LD V+N CD+ PLD+LG+++ PGI+GL GL
Sbjct: 181 LLLLFHSLK-------------RHPPLFLDTVKNFCDILNPLDQLGIYKSNPGIIGLGGL 227
Query: 747 VXXXXXXXXXXCPWLRLK 800
V P ++LK
Sbjct: 228 VSSVAGIITVAYPQMKLK 245
>ref|XP_875617.1| PREDICTED: peroxisomal membrane protein 11A-like [Bos taurus].
Length = 247
Score = 171 bits (432), Expect = 2e-42
Identities = 94/258 (36%), Positives = 146/258 (56%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDA++RF+ Q+Q R+RL RA QY C+LL + L+ + ++ ++++LE +S GRK R
Sbjct: 1 MDAFIRFTNQTQGRDRLFRATQYTCTLLRYLLEPKADNEKVVMKLKKLESSVSTGRKWFR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGN AL++ +++V +D+V R C+TV+ LNR +YF D VL+ +GL V++EKW
Sbjct: 61 LGNVVHALQATQQSVRATDLVPRICLTVASLNRVIYFIRDTVLFVRSTGLASGVNKEKWR 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
+ + RYY +SL+++L RD YE+ L ++Q + ++R K
Sbjct: 121 RWAARYYYYSLLLSLVRDLYEVSLQLKQVAHDRAKREKSPSQDTLGYSVADDETEWLQSL 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
L +LK HPPL LD V+N CD+ PLD+LG+++ PGI+GL GL
Sbjct: 181 LLLLFHSLK-------------RHPPLFLDTVKNFCDILNPLDQLGIYKSNPGIIGLGGL 227
Query: 747 VXXXXXXXXXXCPWLRLK 800
V P ++LK
Sbjct: 228 VSSVAGIITVAYPQMKLK 245
>ref|NP_001180185.1| peroxisomal membrane protein 11C [Bos taurus].
Length = 240
Score = 53.1 bits (126), Expect = 5e-07
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Frame = +3
Query: 60 QARERLCRAAQYACSLLGHAL-QKHGASPELQKQIRQLEGHLSLGRKLLRLGNSADALES 236
+ R+RL R Y C L+G L ++ A E+ ++ L LS R +LRL + A
Sbjct: 15 RGRDRLIRTLGYCCQLVGGVLVEQCPARSEVGTRLLALSSQLSHCRVVLRLFDDAAMFVY 74
Query: 237 AKR---AVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWAQRSFRYY 407
K+ DV +R +S+L LY+ C++V WA + ++ VD +W S +
Sbjct: 75 TKQYGLGAEEEDVFVRCVSILSNLADQLYYPCEHVAWAADAKIL-HVDSARWWTLSTTLW 133
Query: 408 LFSLIMNLSRDAYEI 452
SL++ ++R + +
Sbjct: 134 GLSLLLGVARSLWMV 148
>ref|XP_002688897.1| PREDICTED: peroxisomal biogenesis factor 11 gamma-like [Bos
taurus].
Length = 240
Score = 53.1 bits (126), Expect = 5e-07
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Frame = +3
Query: 60 QARERLCRAAQYACSLLGHAL-QKHGASPELQKQIRQLEGHLSLGRKLLRLGNSADALES 236
+ R+RL R Y C L+G L ++ A E+ ++ L LS R +LRL + A
Sbjct: 15 RGRDRLIRTLGYCCQLVGGVLVEQCPARSEVGTRLLALSSQLSHCRVVLRLFDDAAMFVY 74
Query: 237 AKR---AVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWAQRSFRYY 407
K+ DV +R +S+L LY+ C++V WA + ++ VD +W S +
Sbjct: 75 TKQYGLGAEEEDVFVRCVSILSNLADQLYYPCEHVAWAADAKIL-HVDSARWWTLSTTLW 133
Query: 408 LFSLIMNLSRDAYEI 452
SL++ ++R + +
Sbjct: 134 GLSLLLGVARSLWMV 148
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,827,642
Number of extensions: 1067866
Number of successful extensions: 4081
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4065
Number of HSP's successfully gapped: 9
Length of query: 425
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 320
Effective length of database: 14,207,134
Effective search space: 4546282880
Effective search space used: 4546282880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004863
(1275 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533034.1| PREDICTED: similar to Peroxisomal membrane prot... 407 e-113
Alignment gi|XP_849631.1| PREDICTED: similar to Peroxisomal membrane prot... 407 e-113
Alignment gi|XP_545854.2| PREDICTED: similar to peroxisomal biogenesis fa... 176 6e-44
>ref|XP_533034.1| PREDICTED: similar to Peroxisomal membrane protein 11B
(Peroxin-11B) (Peroxisomal biogenesis factor 11B)
(PEX11beta) (Pex11pbeta) isoform 1 [Canis familiaris].
Length = 259
Score = 407 bits (1046), Expect = e-113
Identities = 208/259 (80%), Positives = 209/259 (80%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR
Sbjct: 1 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGL PRVDQEKWA
Sbjct: 61 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSA RRLK
Sbjct: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSAYGRRLKGSGGGAMGGTETAGPGGPGTPG 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
LPQ+ALK GHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
Sbjct: 181 GGLPQLALKLQLRVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 240
Query: 747 VXXXXXXXXXXCPWLRLKP 803
V CPWLRLKP
Sbjct: 241 VSSILSILTLICPWLRLKP 259
>ref|XP_849631.1| PREDICTED: similar to Peroxisomal membrane protein 11B
(Peroxin-11B) (Peroxisomal biogenesis factor 11B)
(PEX11beta) (Pex11pbeta) isoform 3 [Canis familiaris].
Length = 259
Score = 407 bits (1046), Expect = e-113
Identities = 208/259 (80%), Positives = 209/259 (80%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR
Sbjct: 1 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGL PRVDQEKWA
Sbjct: 61 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSA RRLK
Sbjct: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSAYGRRLKGSGGGAMGGTETAGPGGPGTPG 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
LPQ+ALK GHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
Sbjct: 181 GGLPQLALKLQLRVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 240
Query: 747 VXXXXXXXXXXCPWLRLKP 803
V CPWLRLKP
Sbjct: 241 VSSILSILTLICPWLRLKP 259
>ref|XP_545854.2| PREDICTED: similar to peroxisomal biogenesis factor 11A [Canis
familiaris].
Length = 247
Score = 176 bits (445), Expect = 6e-44
Identities = 92/258 (35%), Positives = 145/258 (56%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDA+ RF+ Q+Q R+RL RA QY C LL + L+ ++ ++++LE +S GRK R
Sbjct: 1 MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGN A+++ ++++H +D+V R C+T++++NR +YF CD +LW GL +++EKW
Sbjct: 61 LGNVVHAVQATQQSIHATDLVPRVCLTLANVNRVIYFICDTILWVRSVGLASGINKEKWR 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
+ R+Y +SL+++L+RD YEI L ME+ + ++R K
Sbjct: 121 MWAARHYYYSLLLSLARDLYEISLQMEKIAHNRAKREKSLSQDPLEYNVADEETEWLQSF 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
L +LK HPPL LD V+N CD+ PLD+LG+++ PG++GL GL
Sbjct: 181 LLLLFRSLK-------------KHPPLFLDTVKNFCDILNPLDQLGIYKSNPGLIGLGGL 227
Query: 747 VXXXXXXXXXXCPWLRLK 800
V P +RLK
Sbjct: 228 VSSIAGIIIVAYPQMRLK 245
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,793,126
Number of extensions: 1103035
Number of successful extensions: 4110
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4092
Number of HSP's successfully gapped: 4
Length of query: 425
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 319
Effective length of database: 15,340,888
Effective search space: 4893743272
Effective search space used: 4893743272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004863
(1275 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003837.1| peroxisomal membrane protein 11B isoform 1 [Hom... 405 e-113
Alignment gi|NP_001171724.1| peroxisomal membrane protein 11B isoform 2 [... 369 e-102
Alignment gi|NP_003838.1| peroxisomal membrane protein 11A [Homo sapiens]. 176 3e-44
>ref|NP_003837.1| peroxisomal membrane protein 11B isoform 1 [Homo sapiens].
Length = 259
Score = 405 bits (1041), Expect = e-113
Identities = 207/259 (79%), Positives = 209/259 (80%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDAWVRFSAQSQARERLCRAAQYACSLLGHALQ+HGASPELQKQIRQLE HLSLGRKLLR
Sbjct: 1 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGL PRVDQEKWA
Sbjct: 61 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLK
Sbjct: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
LPQ+ALK GHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
Sbjct: 181 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 240
Query: 747 VXXXXXXXXXXCPWLRLKP 803
V PWLRLKP
Sbjct: 241 VSSILSILTLIYPWLRLKP 259
>ref|NP_001171724.1| peroxisomal membrane protein 11B isoform 2 [Homo sapiens].
Length = 245
Score = 369 bits (946), Expect = e-102
Identities = 189/241 (78%), Positives = 191/241 (79%)
Frame = +3
Query: 81 RAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLRLGNSADALESAKRAVHLS 260
RAAQYACSLLGHALQ+HGASPELQKQIRQLE HLSLGRKLLRLGNSADALESAKRAVHLS
Sbjct: 5 RAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLRLGNSADALESAKRAVHLS 64
Query: 261 DVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWAQRSFRYYLFSLIMNLSRD 440
DVVLRFCITVSHLNRALYFACDNVLWAGKSGL PRVDQEKWAQRSFRYYLFSLIMNLSRD
Sbjct: 65 DVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWAQRSFRYYLFSLIMNLSRD 124
Query: 441 AYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXXXALPQVALKFXXXXXXXX 620
AYEIRLLMEQESSACSRRLK LPQ+ALK
Sbjct: 125 AYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPGGGLPQLALKLRLQVLLLA 184
Query: 621 XXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGLVXXXXXXXXXXCPWLRLK 800
GHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGLV PWLRLK
Sbjct: 185 RVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGLVSSILSILTLIYPWLRLK 244
Query: 801 P 803
P
Sbjct: 245 P 245
>ref|NP_003838.1| peroxisomal membrane protein 11A [Homo sapiens].
Length = 247
Score = 176 bits (447), Expect = 3e-44
Identities = 92/258 (35%), Positives = 145/258 (56%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDA+ RF+ Q+Q R+RL RA QY C LL + L+ ++ ++++LE +S GRK R
Sbjct: 1 MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGN A+++ ++++H +D+V R C+T+++LNR +YF CD +LW GL +++EKW
Sbjct: 61 LGNVVHAIQATEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWR 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
R+ +Y +SL+++L RD YEI L M++ + +++ K
Sbjct: 121 TRAAHHYYYSLLLSLVRDLYEISLQMKRVTCDRAKKEKSASQDPLWFSVAEEETEWLQSF 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
L +LK HPPLLLD V+N CD+ PLD+LG+++ PGI+GL GL
Sbjct: 181 LLLLFRSLK-------------QHPPLLLDTVKNLCDILNPLDQLGIYKSNPGIIGLGGL 227
Query: 747 VXXXXXXXXXXCPWLRLK 800
V P ++LK
Sbjct: 228 VSSIAGMITVAYPQMKLK 245
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,977,625
Number of extensions: 1085136
Number of successful extensions: 3947
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3933
Number of HSP's successfully gapped: 4
Length of query: 425
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 320
Effective length of database: 14,835,944
Effective search space: 4747502080
Effective search space used: 4747502080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004863
(1275 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155859.1| peroxisomal membrane protein 11B isoform 1 [... 405 e-113
Alignment gi|NP_035199.3| peroxisomal membrane protein 11B isoform 1 [Mus... 405 e-113
Alignment gi|NP_001155860.1| peroxisomal membrane protein 11B isoform 2 [... 369 e-102
Alignment gi|NP_035198.1| peroxisomal membrane protein 11A [Mus musculus]. 163 2e-40
>ref|NP_001155859.1| peroxisomal membrane protein 11B isoform 1 [Mus musculus].
Length = 259
Score = 405 bits (1041), Expect = e-113
Identities = 204/259 (78%), Positives = 211/259 (81%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDAWVRFSAQSQARERLCRAAQYACSLLGHALQ+HGASPELQKQIRQLEGHLSLGRKLLR
Sbjct: 1 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGNS DALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGL PRVDQEKWA
Sbjct: 61 LGNSTDALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
QRSFRYYLFSLIMNLSRDAYEIRLLMEQE+SA SRR+K
Sbjct: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQETSAYSRRMKVSGVGVSGGVETVGPGGPGTPG 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
+LPQ+ALKF GHPPLLLDV+RNACDLFIPLDKLGLWRCGPGIVGLCGL
Sbjct: 181 GSLPQLALKFRLRILLLARVLRGHPPLLLDVLRNACDLFIPLDKLGLWRCGPGIVGLCGL 240
Query: 747 VXXXXXXXXXXCPWLRLKP 803
+ CPWLRLKP
Sbjct: 241 ISSILSILTLICPWLRLKP 259
>ref|NP_035199.3| peroxisomal membrane protein 11B isoform 1 [Mus musculus].
Length = 259
Score = 405 bits (1041), Expect = e-113
Identities = 204/259 (78%), Positives = 211/259 (81%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDAWVRFSAQSQARERLCRAAQYACSLLGHALQ+HGASPELQKQIRQLEGHLSLGRKLLR
Sbjct: 1 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGNS DALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGL PRVDQEKWA
Sbjct: 61 LGNSTDALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
QRSFRYYLFSLIMNLSRDAYEIRLLMEQE+SA SRR+K
Sbjct: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQETSAYSRRMKVSGVGVSGGVETVGPGGPGTPG 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
+LPQ+ALKF GHPPLLLDV+RNACDLFIPLDKLGLWRCGPGIVGLCGL
Sbjct: 181 GSLPQLALKFRLRILLLARVLRGHPPLLLDVLRNACDLFIPLDKLGLWRCGPGIVGLCGL 240
Query: 747 VXXXXXXXXXXCPWLRLKP 803
+ CPWLRLKP
Sbjct: 241 ISSILSILTLICPWLRLKP 259
>ref|NP_001155860.1| peroxisomal membrane protein 11B isoform 2 [Mus musculus].
Length = 245
Score = 369 bits (946), Expect = e-102
Identities = 186/241 (77%), Positives = 193/241 (80%)
Frame = +3
Query: 81 RAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLRLGNSADALESAKRAVHLS 260
RAAQYACSLLGHALQ+HGASPELQKQIRQLEGHLSLGRKLLRLGNS DALESAKRAVHLS
Sbjct: 5 RAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLRLGNSTDALESAKRAVHLS 64
Query: 261 DVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWAQRSFRYYLFSLIMNLSRD 440
DVVLRFCITVSHLNRALYFACDNVLWAGKSGL PRVDQEKWAQRSFRYYLFSLIMNLSRD
Sbjct: 65 DVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWAQRSFRYYLFSLIMNLSRD 124
Query: 441 AYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXXXALPQVALKFXXXXXXXX 620
AYEIRLLMEQE+SA SRR+K +LPQ+ALKF
Sbjct: 125 AYEIRLLMEQETSAYSRRMKVSGVGVSGGVETVGPGGPGTPGGSLPQLALKFRLRILLLA 184
Query: 621 XXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGLVXXXXXXXXXXCPWLRLK 800
GHPPLLLDV+RNACDLFIPLDKLGLWRCGPGIVGLCGL+ CPWLRLK
Sbjct: 185 RVLRGHPPLLLDVLRNACDLFIPLDKLGLWRCGPGIVGLCGLISSILSILTLICPWLRLK 244
Query: 801 P 803
P
Sbjct: 245 P 245
>ref|NP_035198.1| peroxisomal membrane protein 11A [Mus musculus].
Length = 246
Score = 163 bits (413), Expect = 2e-40
Identities = 93/258 (36%), Positives = 144/258 (55%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDA++R + QSQ R+RL RA Q+AC LL + L+ + ++++LE +S GRK R
Sbjct: 1 MDAFIRVANQSQGRDRLFRATQHACMLLRYLLESKADKEAVVLKLKRLETSVSTGRKWFR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGN A+++ ++++ +D+ R C+T+++LNR +Y+ CD VLWA GL V++EKW
Sbjct: 61 LGNVFHAIQATEQSIQAADLAPRLCLTLANLNRVVYYICDTVLWAKSVGLTSGVNREKWQ 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
+ + R+Y + L+++L RD YEI L M Q + ++R K
Sbjct: 121 RWAARHYYYFLLLSLVRDLYEILLQMGQVARDRAKREKSSRDPPKYSVANEETEWLQSFL 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
L Q +LK HPPLLLD V+N CD+ IPL++LG+++ G+VGL GL
Sbjct: 181 LLLFQ-SLK-------------RHPPLLLDTVKNFCDILIPLNQLGIYKSNLGVVGLGGL 226
Query: 747 VXXXXXXXXXXCPWLRLK 800
+ P L+LK
Sbjct: 227 ISSLAGLLTVVYPQLKLK 244
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,305,676
Number of extensions: 913695
Number of successful extensions: 3238
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3209
Number of HSP's successfully gapped: 5
Length of query: 425
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 321
Effective length of database: 12,493,815
Effective search space: 4010514615
Effective search space used: 4010514615
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004863
(1275 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928004.1| PREDICTED: peroxisomal membrane protein 11B ... 419 e-117
Alignment gi|XP_003125837.1| PREDICTED: peroxisomal membrane protein 11B ... 383 e-106
Alignment gi|XP_001927674.1| PREDICTED: peroxisomal membrane protein 11A ... 168 7e-42
>ref|XP_001928004.1| PREDICTED: peroxisomal membrane protein 11B isoform 1 [Sus scrofa].
Length = 259
Score = 419 bits (1078), Expect = e-117
Identities = 214/259 (82%), Positives = 214/259 (82%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR
Sbjct: 1 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA
Sbjct: 61 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLK
Sbjct: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGIETGGPGGPGTPG 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
ALPQVALKF GHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
Sbjct: 181 GALPQVALKFRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 240
Query: 747 VXXXXXXXXXXCPWLRLKP 803
V CPWLRLKP
Sbjct: 241 VSSILSILTLICPWLRLKP 259
>ref|XP_003125837.1| PREDICTED: peroxisomal membrane protein 11B isoform 2 [Sus scrofa].
Length = 245
Score = 383 bits (983), Expect = e-106
Identities = 196/241 (81%), Positives = 196/241 (81%)
Frame = +3
Query: 81 RAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLRLGNSADALESAKRAVHLS 260
RAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLRLGNSADALESAKRAVHLS
Sbjct: 5 RAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLRLGNSADALESAKRAVHLS 64
Query: 261 DVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWAQRSFRYYLFSLIMNLSRD 440
DVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWAQRSFRYYLFSLIMNLSRD
Sbjct: 65 DVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWAQRSFRYYLFSLIMNLSRD 124
Query: 441 AYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXXXALPQVALKFXXXXXXXX 620
AYEIRLLMEQESSACSRRLK ALPQVALKF
Sbjct: 125 AYEIRLLMEQESSACSRRLKGSGGGVPGGIETGGPGGPGTPGGALPQVALKFRLQVLLLA 184
Query: 621 XXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGLVXXXXXXXXXXCPWLRLK 800
GHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGLV CPWLRLK
Sbjct: 185 RVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGLVSSILSILTLICPWLRLK 244
Query: 801 P 803
P
Sbjct: 245 P 245
>ref|XP_001927674.1| PREDICTED: peroxisomal membrane protein 11A [Sus scrofa].
Length = 247
Score = 168 bits (425), Expect = 7e-42
Identities = 93/258 (36%), Positives = 141/258 (54%)
Frame = +3
Query: 27 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLR 206
MDA++RF+ Q+Q R+RL RA QY C LL + L+ ++ ++++LE +S GRK R
Sbjct: 1 MDAFIRFTNQTQGRDRLFRATQYTCMLLRYLLEPKADKEKVVMKLKKLEASVSTGRKWFR 60
Query: 207 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLVPRVDQEKWA 386
+GN AL++ + ++H +D+V RFC+T++ LNR YF CD +L+ G+ +++E W
Sbjct: 61 VGNVVHALQATRESIHATDLVPRFCLTLASLNRVGYFICDTILFVKSIGITSGINKETWQ 120
Query: 387 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKXXXXXXXXXXXXXXXXXXXXXX 566
+ RYY SL+++L RD YEI L MEQ + ++R K
Sbjct: 121 VWAARYYCSSLLLSLVRDLYEISLQMEQVAHDRAKREKSPTQDPFGYSVADEETEWLQSF 180
Query: 567 XALPQVALKFXXXXXXXXXXXXGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 746
L +LK HPPLLLD V+N CD+ PLD+LG+++ GI+GL GL
Sbjct: 181 LLLLFRSLK-------------KHPPLLLDTVKNFCDILNPLDQLGIYKSNAGIIGLGGL 227
Query: 747 VXXXXXXXXXXCPWLRLK 800
V P ++LK
Sbjct: 228 VSSLAGIITLAYPQMKLK 245
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,582,457
Number of extensions: 685576
Number of successful extensions: 2628
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2616
Number of HSP's successfully gapped: 4
Length of query: 425
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 323
Effective length of database: 8,804,438
Effective search space: 2843833474
Effective search space used: 2843833474
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004863
(1275 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1679 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1679 bits (847), Expect = 0.0
Identities = 873/879 (99%), Gaps = 2/879 (0%)
Strand = Plus / Plus
Query: 398 caggtactatcttttttccctcatcatgaatttgagccgtgatgcttatgagattcgcct 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109063623 caggtactatcttttttccctcatcatgaatttgagccgtgatgcttatgagattcgcct 109063682
Query: 458 actgatggaacaagagtcttcagcttgtagccggcgactaaagggttctggaggaggagt 517
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 109063683 actgatggaacaagagtcttcagcttgtagccggcgactgaagggttctggaggaggagt 109063742
Query: 518 tccaggaggaattgaaactgggggccctgggggtccagggactccaggaggagccctgcc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109063743 tccaggaggaattgaaactgggggccctgggggtccagggactccaggaggagccctgcc 109063802
Query: 578 ccaagtggctctgaagtttcggctccaagttctgctcctggctcgggtccttcgaggtca 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109063803 ccaagtggctctgaagtttcggctccaagttctgctcctggctcgggtccttcgaggtca 109063862
Query: 638 tccccctcttctgctggatgtggtcagaaatgcctgtgatctcttcattccactggacaa 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109063863 tccccctcttctgctggatgtggtcagaaatgcctgtgatctcttcattccactggacaa 109063922
Query: 698 actaggcctctggcgctgtggccctgggattgtggggctttgtggcctcgtgtcctccat 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109063923 actaggcctctggcgctgtggccctgggattgtggggctttgtggcctcgtgtcctccat 109063982
Query: 758 cctgtctattctcaccctaatttgcccttggctgcgactcaagccctgatattctggtat 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109063983 cctgtctattctcaccctaatttgcccttggctgcgactcaagccctgatattctggtat 109064042
Query: 818 aggataaagaggggaactgaattgatgacgtggaattttagattgttcccatgtaccagc 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109064043 aggataaagaggggaactgaattgatgacgtggaattttagattgttcccatgtaccagc 109064102
Query: 878 ctaattctgaccctactccttggttaaagttaaaatccagagattttggaggtaggggga 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109064103 ctaattctgaccctactccttggttaaagttaaaatccagagattttggaggtaggggga 109064162
Query: 938 ggagcttaggggagataagatggggaaagataacttgtgagttcgataggttgattctga 997
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 109064163 ggagcttaggggagataagatgaggaaagataacttgtgagttcgataggttgattctga 109064222
Query: 998 cattcagatctgctggagtttttgttcttttcctccttcattgcattgtctttgtctttc 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109064223 cattcagatctgctggagtttttgttcttttcctccttcattgcattgtctttgtctttc 109064282
Query: 1058 ttgactctttactgtgtctcttttaagtctatttaagattctgtctctgcatctctgttt 1117
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 109064283 ttgactctttactgtgtctcctttaagtctatttaagattctgtctctgcatctctgttt 109064342
Query: 1118 taccttctcagtcccttatcataagaatttaatgagcaacaggattactttttggtatgg 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109064343 taccttctcagtcccttatcataagaatttaatgagcaacaggattactttttggtatgg 109064402
Query: 1178 gaagtagaaggtatggtctgtaaggttccaactgccttc-ttttcctcaccaaggtgact 1236
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 109064403 gaggtagaaggtatggtctgtaaggttccaactgccttctttttcctcaccaaggtgact 109064462
Query: 1237 tgtggctgttatttttcccttttcaaactccaaatcaca 1275
||||||||||||||||||| |||||||||||||||||||
Sbjct: 109064463 tgtggctgttatttttccc-tttcaaactccaaatcaca 109064500
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Plus
Query: 199 ttctacgcctcggtaactcagcagatgcccttgagtcagccaaacgagctgtgcatctat 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109059893 ttctacgcctcggtaactcagcagatgcccttgagtcagccaaacgagctgtgcatctat 109059952
Query: 259 cagatgttgtcctgagattctgcatcactgttagtcaccttaatagagctttgtacttcg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109059953 cagatgttgtcctgagattctgcatcactgttagtcaccttaatagagctttgtacttcg 109060012
Query: 319 cctgcgataatgtcctgtgggccggaaagtctggacttgttccccgtgtggatcaggaga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109060013 cctgcgataatgtcctgtgggccggaaagtctggacttgttccccgtgtggatcaggaga 109060072
Query: 379 agtgggcccagcgttcattcaggt 402
||||||||||||||||||||||||
Sbjct: 109060073 agtgggcccagcgttcattcaggt 109060096
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 81 agggccgcccaatatgcttgctcccttcttggccatgccctacagaaacatggggccagt 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109058808 agggccgcccaatatgcttgctcccttcttggccatgccctacagaaacatggggccagt 109058867
Query: 141 cctgagttacagaaacagattcgacagctggagggtcatctgagcctaggaagaaagc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109058868 cctgagttacagaaacagattcgacagctggagggtcatctgagcctaggaagaaagc 109058925
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gctgcggagccggggccgccgctgtcatggacgcctgggtccgcttcagcgctcagagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109057938 gctgcggagccggggccgccgctgtcatggacgcctgggtccgcttcagcgctcagagcc 109057997
Query: 61 aggcccgggagcggctgtgtagg 83
|||||||||||||||||||||||
Sbjct: 109057998 aggcccgggagcggctgtgtagg 109058020
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,339,147
Number of extensions: 328
Number of successful extensions: 328
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 4
Length of query: 1275
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1254
Effective length of database: 2,808,413,156
Effective search space: 3521750097624
Effective search space used: 3521750097624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)