Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004876
(916 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077217.1| twist-related protein 2 [Bos taurus]. 316 2e-86
Alignment gi|NP_001178074.1| twist-related protein 1 [Bos taurus]. 232 4e-61
Alignment gi|XP_002686730.1| PREDICTED: twist homolog 1-like [Bos taurus]. 232 4e-61
Alignment gi|XP_002707767.1| PREDICTED: pancreas transcription factor 1 s... 73 3e-13
Alignment gi|XP_001787738.1| PREDICTED: pancreas transcription factor 1 s... 73 3e-13
Alignment gi|NP_001179075.1| musculin [Bos taurus]. 69 7e-12
Alignment gi|XP_002692746.1| PREDICTED: musculin-like [Bos taurus]. 69 7e-12
Alignment gi|NP_001014899.1| transcription factor 21 [Bos taurus]. 68 1e-11
Alignment gi|XP_001249604.2| PREDICTED: transcription factor 21-like [Bos... 68 1e-11
Alignment gi|NP_001075190.1| transcription factor 15 [Bos taurus]. 65 8e-11
>ref|NP_001077217.1| twist-related protein 2 [Bos taurus].
Length = 160
Score = 316 bits (810), Expect = 2e-86
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +2
Query: 167 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS 346
MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS
Sbjct: 1 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS 60
Query: 347 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 526
FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV
Sbjct: 61 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 120
Query: 527 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 646
LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH
Sbjct: 121 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 160
>ref|NP_001178074.1| twist-related protein 1 [Bos taurus].
Length = 201
Score = 232 bits (591), Expect = 4e-61
Identities = 133/200 (66%), Positives = 145/200 (72%), Gaps = 40/200 (20%)
Frame = +2
Query: 167 MEEGSSSPVSPVD-SLGTSEEELERQP----KRFGRKRRYSKKSS--------------- 286
M++ SSSPVSP D SL SEEE +RQ KR GRKRR S++S+
Sbjct: 2 MQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVG 61
Query: 287 ---EDGSPTPGKRGKK-----------------GSPSAQSFEELQSQRILANVRERQRTQ 406
E GSP GKRGKK G S QS+EELQ+QR++ANVRERQRTQ
Sbjct: 62 GGEEPGSPAQGKRGKKSAGCGGGGGAGGGGSSSGGGSPQSYEELQTQRVMANVRERQRTQ 121
Query: 407 SLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHER 586
SLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDE+D+KM SCSYVAHER
Sbjct: 122 SLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAHER 181
Query: 587 LSYAFSVWRMEGAWSMSASH 646
LSYAFSVWRMEGAWSMSASH
Sbjct: 182 LSYAFSVWRMEGAWSMSASH 201
>ref|XP_002686730.1| PREDICTED: twist homolog 1-like [Bos taurus].
Length = 201
Score = 232 bits (591), Expect = 4e-61
Identities = 133/200 (66%), Positives = 145/200 (72%), Gaps = 40/200 (20%)
Frame = +2
Query: 167 MEEGSSSPVSPVD-SLGTSEEELERQP----KRFGRKRRYSKKSS--------------- 286
M++ SSSPVSP D SL SEEE +RQ KR GRKRR S++S+
Sbjct: 2 MQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVG 61
Query: 287 ---EDGSPTPGKRGKK-----------------GSPSAQSFEELQSQRILANVRERQRTQ 406
E GSP GKRGKK G S QS+EELQ+QR++ANVRERQRTQ
Sbjct: 62 GGEEPGSPAQGKRGKKSAGCGGGGGAGGGGSSSGGGSPQSYEELQTQRVMANVRERQRTQ 121
Query: 407 SLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHER 586
SLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDE+D+KM SCSYVAHER
Sbjct: 122 SLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAHER 181
Query: 587 LSYAFSVWRMEGAWSMSASH 646
LSYAFSVWRMEGAWSMSASH
Sbjct: 182 LSYAFSVWRMEGAWSMSASH 201
>ref|XP_002707767.1| PREDICTED: pancreas transcription factor 1 subunit alpha-like [Bos
taurus].
Length = 326
Score = 73.2 bits (178), Expect = 3e-13
Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Frame = +2
Query: 296 SPTPGKRGKKGSPSAQ------SFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLP 457
SP RG G+ +A+ S ELQ R ANVRER+R QS+N+AF LR IPTLP
Sbjct: 133 SPRARLRGLSGAAAARRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLP 192
Query: 458 SDK-LSKIQTLKLAARYIDFLYQVLQSD 538
+K LSK+ TL+LA YI+FL +++Q+D
Sbjct: 193 YEKRLSKVDTLRLAIGYINFLSELVQAD 220
>ref|XP_001787738.1| PREDICTED: pancreas transcription factor 1 subunit alpha-like [Bos
taurus].
Length = 341
Score = 73.2 bits (178), Expect = 3e-13
Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Frame = +2
Query: 296 SPTPGKRGKKGSPSAQ------SFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLP 457
SP RG G+ +A+ S ELQ R ANVRER+R QS+N+AF LR IPTLP
Sbjct: 148 SPRARLRGLSGAAAARRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLP 207
Query: 458 SDK-LSKIQTLKLAARYIDFLYQVLQSD 538
+K LSK+ TL+LA YI+FL +++Q+D
Sbjct: 208 YEKRLSKVDTLRLAIGYINFLSELVQAD 235
>ref|NP_001179075.1| musculin [Bos taurus].
Length = 197
Score = 68.6 bits (166), Expect = 7e-12
Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Frame = +2
Query: 185 SPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSP-TPGKRGKKGSPSAQSFEEL- 358
S VSP D+ E++ + + +R + P G GKK P S E
Sbjct: 37 SYVSPSDNSSAEEDDPDGEEERCALGAAGGAGGCKRKRPRVAGGGGKKPLPPKGSAAECK 96
Query: 359 QSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQS 535
QSQR AN RER R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+LQ
Sbjct: 97 QSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQE 156
Query: 536 DEMDNKMTSCSYVAHERLSYAFSV 607
D +N YV L++ F V
Sbjct: 157 DRYEN-----GYVHPVNLTWPFVV 175
>ref|XP_002692746.1| PREDICTED: musculin-like [Bos taurus].
Length = 197
Score = 68.6 bits (166), Expect = 7e-12
Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Frame = +2
Query: 185 SPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSP-TPGKRGKKGSPSAQSFEEL- 358
S VSP D+ E++ + + +R + P G GKK P S E
Sbjct: 37 SYVSPSDNSSAEEDDPDGEEERCALGAAGGAGGCKRKRPRVAGGGGKKPLPPKGSAAECK 96
Query: 359 QSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQS 535
QSQR AN RER R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+LQ
Sbjct: 97 QSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQE 156
Query: 536 DEMDNKMTSCSYVAHERLSYAFSV 607
D +N YV L++ F V
Sbjct: 157 DRYEN-----GYVHPVNLTWPFVV 175
>ref|NP_001014899.1| transcription factor 21 [Bos taurus].
Length = 179
Score = 68.2 bits (165), Expect = 1e-11
Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 12/133 (9%)
Frame = +2
Query: 245 KRFGRKRRYSKKSS--EDGSPTPGKRG---------KKGSPSAQSFEELQSQRILANVRE 391
K F +++SS E GSP G+ G KK S S E Q QR AN RE
Sbjct: 29 KEFVTSNESTEESSNCEAGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARE 88
Query: 392 RQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCS 568
R R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+L +D+ +N
Sbjct: 89 RARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN-----G 143
Query: 569 YVAHERLSYAFSV 607
Y+ L++ F V
Sbjct: 144 YIHPVNLTWPFMV 156
>ref|XP_001249604.2| PREDICTED: transcription factor 21-like [Bos taurus].
Length = 222
Score = 68.2 bits (165), Expect = 1e-11
Identities = 65/195 (33%), Positives = 87/195 (44%), Gaps = 12/195 (6%)
Frame = +2
Query: 245 KRFGRKRRYSKKSS--EDGSPTPGKRG---------KKGSPSAQSFEELQSQRILANVRE 391
K F +++SS E GSP G+ G KK S S E Q QR AN RE
Sbjct: 29 KEFVTSNESTEESSNCEAGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARE 88
Query: 392 RQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCS 568
R R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+L +D+ +N
Sbjct: 89 RARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN-----G 143
Query: 569 YVAHERLSYAFSVWRMEGAWSMSASH*RLATHVRTGASGLSRGAERKWNWGTSASASVTS 748
Y+ H +F VW W A H A + E GT AS S +
Sbjct: 144 YI-HPVNLVSFRVW-----WRRVA-----PPHPGHSAPAVGPRCEGARRTGTRASWSPPA 192
Query: 749 ETQRASRTPPVPCSR 793
R PC R
Sbjct: 193 SASRG------PCGR 201
>ref|NP_001075190.1| transcription factor 15 [Bos taurus].
Length = 197
Score = 65.1 bits (157), Expect = 8e-11
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +2
Query: 305 PGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQ 481
PG G + + + + QR AN RER RTQS+N AF ALR +IPT P D KLSKI+
Sbjct: 51 PGPGGGRRAAGSAGPVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIE 110
Query: 482 TLKLAARYIDFLYQVL 529
TL+LA+ YI L VL
Sbjct: 111 TLRLASSYIAHLANVL 126
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,566,513
Number of extensions: 787565
Number of successful extensions: 4836
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 4792
Number of HSP's successfully gapped: 49
Length of query: 305
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,306,398
Effective search space: 2904198794
Effective search space used: 2904198794
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004876
(916 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543311.1| PREDICTED: similar to twist homolog 2 [Canis fa... 316 2e-86
Alignment gi|XP_850972.1| PREDICTED: similar to Twist related protein 1 (... 239 3e-63
Alignment gi|XP_862829.1| PREDICTED: similar to twist gene homolog 1 isof... 233 2e-61
Alignment gi|XP_862780.1| PREDICTED: similar to twist gene homolog 1 isof... 231 7e-61
Alignment gi|XP_544121.2| PREDICTED: similar to Musculin (Activated B-cel... 69 5e-12
Alignment gi|XP_541110.2| PREDICTED: similar to Transcription factor 21 (... 68 1e-11
Alignment gi|XP_849189.1| PREDICTED: similar to heart and neural crest de... 64 2e-10
Alignment gi|XP_852061.1| PREDICTED: similar to Transcription factor 15 (... 64 3e-10
Alignment gi|XP_852903.1| PREDICTED: similar to T-cell acute lymphocytic ... 61 2e-09
Alignment gi|XP_545553.2| PREDICTED: similar to Neurogenic differentiatio... 60 3e-09
>ref|XP_543311.1| PREDICTED: similar to twist homolog 2 [Canis familiaris].
Length = 160
Score = 316 bits (810), Expect = 2e-86
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +2
Query: 167 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS 346
MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS
Sbjct: 1 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS 60
Query: 347 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 526
FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV
Sbjct: 61 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 120
Query: 527 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 646
LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH
Sbjct: 121 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 160
>ref|XP_850972.1| PREDICTED: similar to Twist related protein 1 (H-twist) isoform 2
[Canis familiaris].
Length = 182
Score = 239 bits (609), Expect = 3e-63
Identities = 132/181 (72%), Positives = 145/181 (80%), Gaps = 21/181 (11%)
Frame = +2
Query: 167 MEEGSSSPVSPVD-SLGTSEEELERQP----KRFGRKRRYSKKSSED-GSPTPGKRGKK- 325
M++ SSSPVSP D SL SEEE +RQ KR GRKRR S++S ++ GSP GKRGKK
Sbjct: 2 MQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSGDEPGSPAQGKRGKKS 61
Query: 326 --------------GSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD 463
G S QS+EELQ+QR++ANVRERQRTQSLNEAFAALRKIIPTLPSD
Sbjct: 62 AGGGGGGGGGGSSSGGGSPQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSD 121
Query: 464 KLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSAS 643
KLSKIQTLKLAARYIDFLYQVLQSDE+D+KM SCSYVAHERLSYAFSVWRMEGAWSMSAS
Sbjct: 122 KLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAHERLSYAFSVWRMEGAWSMSAS 181
Query: 644 H 646
H
Sbjct: 182 H 182
>ref|XP_862829.1| PREDICTED: similar to twist gene homolog 1 isoform 4 [Canis
familiaris].
Length = 199
Score = 233 bits (593), Expect = 2e-61
Identities = 133/198 (67%), Positives = 145/198 (73%), Gaps = 38/198 (19%)
Frame = +2
Query: 167 MEEGSSSPVSPVD-SLGTSEEELERQP----KRFGRKRRYSKKSS--------------- 286
M++ SSSPVSP D SL SEEE +RQ KR GRKRR S++S+
Sbjct: 2 MQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVG 61
Query: 287 ---EDGSPTPGKRGKK---------------GSPSAQSFEELQSQRILANVRERQRTQSL 412
E GSP GKRGKK G S QS+EELQ+QR++ANVRERQRTQSL
Sbjct: 62 GGDEPGSPAQGKRGKKSAGGGGGGGGGGSSSGGGSPQSYEELQTQRVMANVRERQRTQSL 121
Query: 413 NEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHERLS 592
NEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDE+D+KM SCSYVAHERLS
Sbjct: 122 NEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAHERLS 181
Query: 593 YAFSVWRMEGAWSMSASH 646
YAFSVWRMEGAWSMSASH
Sbjct: 182 YAFSVWRMEGAWSMSASH 199
>ref|XP_862780.1| PREDICTED: similar to twist gene homolog 1 isoform 3 [Canis
familiaris].
Length = 160
Score = 231 bits (589), Expect = 7e-61
Identities = 125/165 (75%), Positives = 138/165 (83%), Gaps = 5/165 (3%)
Frame = +2
Query: 167 MEEGSSSPVSPVD-SLGTSEEELERQP----KRFGRKRRYSKKSSEDGSPTPGKRGKKGS 331
M++ SSSPVSP D SL SEEE +RQ KR GRKRR S++S+ G+ G G
Sbjct: 2 MQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGA------GSSGG 55
Query: 332 PSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYID 511
S QS+EELQ+QR++ANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYID
Sbjct: 56 GSPQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYID 115
Query: 512 FLYQVLQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 646
FLYQVLQSDE+D+KM SCSYVAHERLSYAFSVWRMEGAWSMSASH
Sbjct: 116 FLYQVLQSDELDSKMASCSYVAHERLSYAFSVWRMEGAWSMSASH 160
>ref|XP_544121.2| PREDICTED: similar to Musculin (Activated B-cell factor-1) (ABF-1)
[Canis familiaris].
Length = 198
Score = 69.3 bits (168), Expect = 5e-12
Identities = 53/145 (36%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Frame = +2
Query: 185 SPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSP--TPGKRGKKGSPSAQSFEEL 358
S +SP D+ EE+ E + +R + P G GKK P S +
Sbjct: 37 SYISPSDNSSAEEEDPEGEEERCALGAAGGAEGCRRKRPRVAGGGGGKKPLPPKGSAADC 96
Query: 359 -QSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQ 532
QSQR AN RER R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+LQ
Sbjct: 97 KQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQ 156
Query: 533 SDEMDNKMTSCSYVAHERLSYAFSV 607
D +N YV L++ F V
Sbjct: 157 EDRYEN-----GYVHPVNLTWPFVV 176
>ref|XP_541110.2| PREDICTED: similar to Transcription factor 21 (Podocyte-expressed
1) (Pod-1) (Epicardin) (Capsulin) [Canis familiaris].
Length = 269
Score = 68.2 bits (165), Expect = 1e-11
Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 12/133 (9%)
Frame = +2
Query: 245 KRFGRKRRYSKKSS--EDGSPTPGKRG---------KKGSPSAQSFEELQSQRILANVRE 391
K F +++SS E GSP G+ G KK S S E Q QR AN RE
Sbjct: 119 KEFVTSNESTEESSNCEAGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARE 178
Query: 392 RQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCS 568
R R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+L +D+ +N
Sbjct: 179 RARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN-----G 233
Query: 569 YVAHERLSYAFSV 607
Y+ L++ F V
Sbjct: 234 YIHPVNLTWPFMV 246
>ref|XP_849189.1| PREDICTED: similar to heart and neural crest derivatives expressed
transcript 2 [Canis familiaris].
Length = 259
Score = 63.9 bits (154), Expect = 2e-10
Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +2
Query: 365 QRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 541
+R AN +ER+RTQS+N AFA LR+ IP +P+D KLSKI+TL+LA YI +L +L D+
Sbjct: 142 RRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDD 201
Query: 542 MDNK 553
+ +
Sbjct: 202 QNGE 205
>ref|XP_852061.1| PREDICTED: similar to Transcription factor 15 (bHLH-EC2 protein)
(Paraxis) [Canis familiaris].
Length = 202
Score = 63.5 bits (153), Expect = 3e-10
Identities = 36/56 (64%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Frame = +2
Query: 365 QRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVL 529
QR AN RER RTQS+N AF ALR +IPT P D KLSKI+TL+LA+ YI L VL
Sbjct: 76 QRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVL 131
>ref|XP_852903.1| PREDICTED: similar to T-cell acute lymphocytic leukemia-1 protein
(TAL-1 protein) (Stem cell protein) (T-cell
leukemia/lymphoma-5 protein) [Canis familiaris].
Length = 327
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/60 (55%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 365 QRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 541
+RI N RER R Q++N AFA LRK+IPT P D KLSK + L+LA +YI+FL ++L E
Sbjct: 184 RRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLNDQE 243
>ref|XP_545553.2| PREDICTED: similar to Neurogenic differentiation factor 1 (NeuroD1)
(NeuroD) [Canis familiaris].
Length = 343
Score = 60.1 bits (144), Expect = 3e-09
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Frame = +2
Query: 275 KKSSEDGSPTPGKRG-KKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPT 451
++ ED P +RG KK + E + +R+ AN RER R LN A LRK++P
Sbjct: 71 EEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPC 130
Query: 452 L-PSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTS 562
+ KLSKI+TL+LA YI L ++L+S + + T+
Sbjct: 131 YSKTQKLSKIETLRLAKNYIWALSEILRSGKSPHLPTT 168
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,650,744
Number of extensions: 766986
Number of successful extensions: 5218
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 5166
Number of HSP's successfully gapped: 25
Length of query: 305
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 203
Effective length of database: 15,474,232
Effective search space: 3141269096
Effective search space used: 3141269096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004876
(916 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_476527.1| twist-related protein 2 [Homo sapiens]. 316 2e-86
Alignment gi|NP_000465.1| twist-related protein 1 [Homo sapiens]. 231 5e-61
Alignment gi|NP_835455.1| pancreas transcription factor 1 subunit alpha [... 72 7e-13
Alignment gi|NP_005089.2| musculin [Homo sapiens]. 71 1e-12
Alignment gi|NP_003197.2| transcription factor 21 [Homo sapiens]. 69 5e-12
Alignment gi|NP_938206.1| transcription factor 21 [Homo sapiens]. 69 5e-12
Alignment gi|NP_001008272.1| basic helix-loop-helix transcription factor ... 69 6e-12
Alignment gi|NP_001073983.1| basic helix-loop-helix transcription factor ... 69 6e-12
Alignment gi|NP_004600.2| transcription factor 15 [Homo sapiens]. 66 5e-11
Alignment gi|NP_005412.1| T-cell acute lymphocytic leukemia protein 2 [Ho... 65 1e-10
>ref|NP_476527.1| twist-related protein 2 [Homo sapiens].
Length = 160
Score = 316 bits (810), Expect = 2e-86
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +2
Query: 167 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS 346
MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS
Sbjct: 1 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS 60
Query: 347 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 526
FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV
Sbjct: 61 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 120
Query: 527 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 646
LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH
Sbjct: 121 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 160
>ref|NP_000465.1| twist-related protein 1 [Homo sapiens].
Length = 202
Score = 231 bits (590), Expect = 5e-61
Identities = 133/201 (66%), Positives = 145/201 (72%), Gaps = 41/201 (20%)
Frame = +2
Query: 167 MEEGSSSPVSPVD-SLGTSEEELERQP----KRFGRKRRYSKKSS--------------- 286
M++ SSSPVSP D SL SEEE +RQ KR GRKRR S++S+
Sbjct: 2 MQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVG 61
Query: 287 ---EDGSPTPGKRGKK------------------GSPSAQSFEELQSQRILANVRERQRT 403
E GSP GKRGKK G S QS+EELQ+QR++ANVRERQRT
Sbjct: 62 GGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQTQRVMANVRERQRT 121
Query: 404 QSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHE 583
QSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDE+D+KM SCSYVAHE
Sbjct: 122 QSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAHE 181
Query: 584 RLSYAFSVWRMEGAWSMSASH 646
RLSYAFSVWRMEGAWSMSASH
Sbjct: 182 RLSYAFSVWRMEGAWSMSASH 202
>ref|NP_835455.1| pancreas transcription factor 1 subunit alpha [Homo sapiens].
Length = 328
Score = 72.0 bits (175), Expect = 7e-13
Identities = 44/90 (48%), Positives = 58/90 (64%), Gaps = 9/90 (10%)
Frame = +2
Query: 296 SPTPGKRGKKGSPSA--------QSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPT 451
SP RG G+ +A +S ELQ R ANVRER+R QS+N+AF LR IPT
Sbjct: 133 SPGARLRGLSGAAAAAARRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPT 192
Query: 452 LPSDK-LSKIQTLKLAARYIDFLYQVLQSD 538
LP +K LSK+ TL+LA YI+FL +++Q+D
Sbjct: 193 LPYEKRLSKVDTLRLAIGYINFLSELVQAD 222
>ref|NP_005089.2| musculin [Homo sapiens].
Length = 206
Score = 71.2 bits (173), Expect = 1e-12
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 12/153 (7%)
Frame = +2
Query: 185 SPVSPVDSLGTSEEELERQPKRF---------GRKRRYSKKSSEDGSP-TPGKRGKKGSP 334
S SP D+ EE+ + + +R G KR+ + + G+ + G GKK P
Sbjct: 37 SYASPSDNSSAEEEDPDGEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLP 96
Query: 335 SAQSFEEL-QSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYI 508
+ S E QSQR AN RER R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI
Sbjct: 97 AKGSAAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYI 156
Query: 509 DFLYQVLQSDEMDNKMTSCSYVAHERLSYAFSV 607
L Q+LQ D +N YV L++ F V
Sbjct: 157 AHLRQLLQEDRYEN-----GYVHPVNLTWPFVV 184
>ref|NP_003197.2| transcription factor 21 [Homo sapiens].
Length = 179
Score = 69.3 bits (168), Expect = 5e-12
Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Frame = +2
Query: 245 KRFGRKRRYSKKSS--EDGSPTPGKRG---------KKGSPSAQSFEELQSQRILANVRE 391
K F +++SS E+GSP G+ G KK S S E Q QR AN RE
Sbjct: 29 KEFVTSNESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARE 88
Query: 392 RQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCS 568
R R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+L +D+ +N
Sbjct: 89 RARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN-----G 143
Query: 569 YVAHERLSYAFSV 607
Y+ L++ F V
Sbjct: 144 YIHPVNLTWPFMV 156
>ref|NP_938206.1| transcription factor 21 [Homo sapiens].
Length = 179
Score = 69.3 bits (168), Expect = 5e-12
Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Frame = +2
Query: 245 KRFGRKRRYSKKSS--EDGSPTPGKRG---------KKGSPSAQSFEELQSQRILANVRE 391
K F +++SS E+GSP G+ G KK S S E Q QR AN RE
Sbjct: 29 KEFVTSNESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARE 88
Query: 392 RQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCS 568
R R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+L +D+ +N
Sbjct: 89 RARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN-----G 143
Query: 569 YVAHERLSYAFSV 607
Y+ L++ F V
Sbjct: 144 YIHPVNLTWPFMV 156
>ref|NP_001008272.1| basic helix-loop-helix transcription factor scleraxis [Homo
sapiens].
Length = 201
Score = 68.9 bits (167), Expect = 6e-12
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Frame = +2
Query: 185 SPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQS 364
SP+S + G+ + +P R R + + G+R G P + E +
Sbjct: 20 SPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAG---GRRAGGGGPGGRPGREPR- 75
Query: 365 QRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 541
QR AN RER RT S+N AF ALR +IPT P+D KLSKI+TL+LA+ YI L VL + E
Sbjct: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
>ref|NP_001073983.1| basic helix-loop-helix transcription factor scleraxis [Homo
sapiens].
Length = 201
Score = 68.9 bits (167), Expect = 6e-12
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Frame = +2
Query: 185 SPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQS 364
SP+S + G+ + +P R R + + G+R G P + E +
Sbjct: 20 SPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAG---GRRAGGGGPGGRPGREPR- 75
Query: 365 QRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 541
QR AN RER RT S+N AF ALR +IPT P+D KLSKI+TL+LA+ YI L VL + E
Sbjct: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
>ref|NP_004600.2| transcription factor 15 [Homo sapiens].
Length = 199
Score = 65.9 bits (159), Expect = 5e-11
Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +2
Query: 299 PTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSK 475
P PG + G + QR AN RER RTQS+N AF ALR +IPT P D KLSK
Sbjct: 51 PGPGGGRRAGGGGGAGPVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSK 110
Query: 476 IQTLKLAARYIDFLYQVL 529
I+TL+LA+ YI L VL
Sbjct: 111 IETLRLASSYIAHLANVL 128
>ref|NP_005412.1| T-cell acute lymphocytic leukemia protein 2 [Homo sapiens].
Length = 108
Score = 64.7 bits (156), Expect = 1e-10
Identities = 34/57 (59%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Frame = +2
Query: 362 SQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVL 529
+++I N RER R Q++N AFA LRK+IPT P D KLSK +TL+LA RYI+FL +VL
Sbjct: 2 TRKIFTNTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVL 58
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,797,206
Number of extensions: 732017
Number of successful extensions: 4486
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 4446
Number of HSP's successfully gapped: 37
Length of query: 305
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,934,836
Effective search space: 3031771708
Effective search space used: 3031771708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004876
(916 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031881.1| twist-related protein 2 [Mus musculus]. 316 1e-86
Alignment gi|NP_035788.1| twist-related protein 1 [Mus musculus]. 228 7e-60
Alignment gi|NP_034957.1| musculin [Mus musculus]. 74 2e-13
Alignment gi|NP_035675.1| transcription factor 21 [Mus musculus]. 71 1e-12
Alignment gi|NP_061279.2| pancreas transcription factor 1 subunit alpha [... 70 2e-12
Alignment gi|NP_942588.1| basic helix-loop-helix transcription factor scl... 70 3e-12
Alignment gi|NP_033343.1| T-cell acute lymphocytic leukemia protein 2 hom... 66 4e-11
Alignment gi|NP_033354.2| transcription factor 15 [Mus musculus]. 65 7e-11
Alignment gi|NP_034532.3| heart- and neural crest derivatives-expressed p... 64 2e-10
Alignment gi|NP_033848.1| neurogenin-2 [Mus musculus]. 61 1e-09
>ref|NP_031881.1| twist-related protein 2 [Mus musculus].
Length = 160
Score = 316 bits (810), Expect = 1e-86
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +2
Query: 167 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS 346
MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS
Sbjct: 1 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS 60
Query: 347 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 526
FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV
Sbjct: 61 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 120
Query: 527 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 646
LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH
Sbjct: 121 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 160
>ref|NP_035788.1| twist-related protein 1 [Mus musculus].
Length = 206
Score = 228 bits (580), Expect = 7e-60
Identities = 132/205 (64%), Positives = 144/205 (70%), Gaps = 45/205 (21%)
Frame = +2
Query: 167 MEEGSSSPVSPVD-SLGTSEEELERQP----KRFGRKRRYSKKSS--------------- 286
M++ SSSPVSP D SL SEEE +RQ KR RKRR S++S+
Sbjct: 2 MQDVSSSPVSPADDSLSNSEEEPDRQQPASGKRGARKRRSSRRSAGGSAGPGGATGGGIG 61
Query: 287 ---EDGSPTPGKRGKK----------------------GSPSAQSFEELQSQRILANVRE 391
E GSP GKRGKK G S QS+EELQ+QR++ANVRE
Sbjct: 62 GGDEPGSPAQGKRGKKSAGGGGGGGAGGGGGGGGGSSSGGGSPQSYEELQTQRVMANVRE 121
Query: 392 RQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSY 571
RQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDE+D+KM SCSY
Sbjct: 122 RQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSY 181
Query: 572 VAHERLSYAFSVWRMEGAWSMSASH 646
VAHERLSYAFSVWRMEGAWSMSASH
Sbjct: 182 VAHERLSYAFSVWRMEGAWSMSASH 206
>ref|NP_034957.1| musculin [Mus musculus].
Length = 201
Score = 73.9 bits (180), Expect = 2e-13
Identities = 54/145 (37%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Frame = +2
Query: 194 SPVDSLGTSEEELERQPKRFG------RKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEE 355
SP D EE+ E +P G RKR + G G K P + E
Sbjct: 40 SPSDISSAEEEDGEEEPGSLGAAGGCKRKRLRGADAGGAGGRAGGAGKKPLPPKGSAAEC 99
Query: 356 LQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQ 532
QSQR AN RER R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+LQ
Sbjct: 100 KQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQ 159
Query: 533 SDEMDNKMTSCSYVAHERLSYAFSV 607
D ++ SYV L++ F V
Sbjct: 160 EDRYED-----SYVHPVNLTWPFVV 179
>ref|NP_035675.1| transcription factor 21 [Mus musculus].
Length = 179
Score = 71.2 bits (173), Expect = 1e-12
Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Frame = +2
Query: 245 KRFGRKRRYSKKSS--EDGSPTPGKRG---------KKGSPSAQSFEELQSQRILANVRE 391
K FG +++ S E+GSP G+ G KK S S E Q QR AN RE
Sbjct: 29 KEFGTSNESTEEGSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARE 88
Query: 392 RQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCS 568
R R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+L +D+ +N
Sbjct: 89 RARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN-----G 143
Query: 569 YVAHERLSYAFSV 607
Y+ L++ F V
Sbjct: 144 YIHPVNLTWPFMV 156
>ref|NP_061279.2| pancreas transcription factor 1 subunit alpha [Mus musculus].
Length = 324
Score = 70.1 bits (170), Expect = 2e-12
Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Frame = +2
Query: 341 QSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFL 517
+S ELQ R ANVRER+R QS+N+AF LR IPTLP +K LSK+ TL+LA YI+FL
Sbjct: 153 RSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFL 212
Query: 518 YQVLQSD 538
+++Q+D
Sbjct: 213 SELVQAD 219
>ref|NP_942588.1| basic helix-loop-helix transcription factor scleraxis [Mus
musculus].
Length = 207
Score = 69.7 bits (169), Expect = 3e-12
Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Frame = +2
Query: 185 SPVSPVDSLGTSEEELERQPKRF--------GRKRRYSKKSSEDGSPTPGKRGKKGSPSA 340
SP+S + G+ + +P R G +RR + + P PG G P
Sbjct: 21 SPLSEDEDRGSESSGSDEKPCRVHAARCGLQGARRRAGGRRAAGSGPGPG-----GRPGR 75
Query: 341 QSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFL 517
+ QR AN RER RT S+N AF ALR +IPT P+D KLSKI+TL+LA+ YI L
Sbjct: 76 EP-----RQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHL 130
Query: 518 YQVL 529
VL
Sbjct: 131 GNVL 134
>ref|NP_033343.1| T-cell acute lymphocytic leukemia protein 2 homolog [Mus musculus].
Length = 108
Score = 65.9 bits (159), Expect = 4e-11
Identities = 35/57 (61%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Frame = +2
Query: 362 SQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVL 529
+++I N RER R QS+N AFA LRK+IPT P D KLSK +TL+LA RYI+FL +VL
Sbjct: 2 TRKIFTNTRERWRQQSVNNAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVL 58
>ref|NP_033354.2| transcription factor 15 [Mus musculus].
Length = 195
Score = 65.1 bits (157), Expect = 7e-11
Identities = 42/78 (53%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +2
Query: 299 PTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSK 475
P PG G++ S A ++ QR AN RER RTQS+N AF ALR +IPT P D KLSK
Sbjct: 51 PGPGS-GRRASNGAGPVVVVR-QRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSK 108
Query: 476 IQTLKLAARYIDFLYQVL 529
I+TL+LA+ YI L VL
Sbjct: 109 IETLRLASSYIAHLANVL 126
>ref|NP_034532.3| heart- and neural crest derivatives-expressed protein 2 [Mus
musculus].
Length = 217
Score = 63.9 bits (154), Expect = 2e-10
Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +2
Query: 365 QRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 541
+R AN +ER+RTQS+N AFA LR+ IP +P+D KLSKI+TL+LA YI +L +L D+
Sbjct: 100 RRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDD 159
Query: 542 MDNK 553
+ +
Sbjct: 160 QNGE 163
>ref|NP_033848.1| neurogenin-2 [Mus musculus].
Length = 263
Score = 61.2 bits (147), Expect = 1e-09
Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 30/149 (20%)
Frame = +2
Query: 176 GSSSPVS----PVDSLGTSEEELE-RQPKRFGRKRRYSKKSSEDGSPTPGKRG------- 319
GS+SP S P+ S EE+ E R+P +R GSP G G
Sbjct: 21 GSASPASATLTPMSSSADEEEDEELRRPGSARGQRGAEAGQGVQGSPASGAGGCRPGRLL 80
Query: 320 ----------------KKGSPSAQSFEELQ-SQRILANVRERQRTQSLNEAFAALRKIIP 448
+G+ +A++ + ++ ++R+ AN RER R +LN A ALR+++P
Sbjct: 81 GLMHECKRRPSRSRAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLP 140
Query: 449 TLPSD-KLSKIQTLKLAARYIDFLYQVLQ 532
T P D KL+KI+TL+ A YI L + L+
Sbjct: 141 TFPEDAKLTKIETLRFAHNYIWALTETLR 169
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,150,584
Number of extensions: 602068
Number of successful extensions: 3767
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 3692
Number of HSP's successfully gapped: 35
Length of query: 305
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 204
Effective length of database: 12,583,923
Effective search space: 2567120292
Effective search space used: 2567120292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004876
(916 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133824.1| PREDICTED: twist-related protein 2-like [Sus... 316 1e-86
Alignment gi|XP_003130240.2| PREDICTED: twist-related protein 1-like [Sus... 231 3e-61
Alignment gi|XP_003125643.1| PREDICTED: musculin-like [Sus scrofa]. 71 9e-13
Alignment gi|XP_003357806.1| PREDICTED: pancreas transcription factor 1 s... 70 1e-12
Alignment gi|XP_001927106.2| PREDICTED: transcription factor 21-like [Sus... 67 1e-11
Alignment gi|XP_003134406.1| PREDICTED: transcription factor 15-like [Sus... 65 7e-11
Alignment gi|XP_001926838.2| PREDICTED: heart- and neural crest derivativ... 64 1e-10
Alignment gi|XP_001928280.1| PREDICTED: neurogenic differentiation factor... 62 6e-10
Alignment gi|XP_003128060.2| PREDICTED: t-cell acute lymphocytic leukemia... 61 1e-09
Alignment gi|XP_003359626.1| PREDICTED: neurogenic differentiation factor... 60 2e-09
>ref|XP_003133824.1| PREDICTED: twist-related protein 2-like [Sus scrofa].
Length = 160
Score = 316 bits (810), Expect = 1e-86
Identities = 160/160 (100%), Positives = 160/160 (100%)
Frame = +2
Query: 167 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS 346
MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS
Sbjct: 1 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS 60
Query: 347 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 526
FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV
Sbjct: 61 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 120
Query: 527 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 646
LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH
Sbjct: 121 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH 160
>ref|XP_003130240.2| PREDICTED: twist-related protein 1-like [Sus scrofa].
Length = 202
Score = 231 bits (590), Expect = 3e-61
Identities = 133/201 (66%), Positives = 145/201 (72%), Gaps = 41/201 (20%)
Frame = +2
Query: 167 MEEGSSSPVSPVD-SLGTSEEELERQP----KRFGRKRRYSKKSS--------------- 286
M++ SSSPVSP D SL SEEE +RQ KR GRKRR S++S+
Sbjct: 2 MQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGSSGPGGAAGGGVG 61
Query: 287 ---EDGSPTPGKRGKK------------------GSPSAQSFEELQSQRILANVRERQRT 403
E GSP GKRGKK G S QS+EELQ+QR++ANVRERQRT
Sbjct: 62 GGEEPGSPAQGKRGKKSAGCGGGGGGAGGGGSSSGGGSPQSYEELQTQRVMANVRERQRT 121
Query: 404 QSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHE 583
QSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDE+D+KM SCSYVAHE
Sbjct: 122 QSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAHE 181
Query: 584 RLSYAFSVWRMEGAWSMSASH 646
RLSYAFSVWRMEGAWSMSASH
Sbjct: 182 RLSYAFSVWRMEGAWSMSASH 202
>ref|XP_003125643.1| PREDICTED: musculin-like [Sus scrofa].
Length = 201
Score = 70.9 bits (172), Expect = 9e-13
Identities = 56/152 (36%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Frame = +2
Query: 185 SPVSPVDSLGTSEEELERQPKRF---------GRKRRYSKKSSEDGSPTPGKRGKKGSPS 337
S +SP D+ EE+ + + +R G KR+ + + G G GKK P
Sbjct: 37 SYISPSDNSSAEEEDPDGEEERCALGAAGGAGGCKRKRPRVAGGGG----GGGGKKPLPP 92
Query: 338 AQSFEEL-QSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYID 511
S E QSQR AN RER R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI
Sbjct: 93 KGSAAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIA 152
Query: 512 FLYQVLQSDEMDNKMTSCSYVAHERLSYAFSV 607
L Q+LQ D +N YV L++ F V
Sbjct: 153 HLRQLLQEDRYEN-----GYVHPVNLTWPFVV 179
>ref|XP_003357806.1| PREDICTED: pancreas transcription factor 1 subunit alpha-like [Sus
scrofa].
Length = 328
Score = 70.5 bits (171), Expect = 1e-12
Identities = 43/91 (47%), Positives = 58/91 (63%), Gaps = 10/91 (10%)
Frame = +2
Query: 296 SPTPGKRGKKGSPSA---------QSFEELQSQRILANVRERQRTQSLNEAFAALRKIIP 448
+P RG G+ +A +S ELQ R ANVRER+R QS+N+AF LR IP
Sbjct: 133 NPGARLRGLSGAAAAAAARRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIP 192
Query: 449 TLPSDK-LSKIQTLKLAARYIDFLYQVLQSD 538
TLP +K LSK+ TL+LA YI+FL +++Q+D
Sbjct: 193 TLPYEKRLSKVDTLRLAIGYINFLSELVQAD 223
>ref|XP_001927106.2| PREDICTED: transcription factor 21-like [Sus scrofa].
Length = 221
Score = 67.4 bits (163), Expect = 1e-11
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 12/114 (10%)
Frame = +2
Query: 245 KRFGRKRRYSKKSS--EDGSPTPGKRG---------KKGSPSAQSFEELQSQRILANVRE 391
K F +++SS E GSP G+ G KK S S E Q QR AN RE
Sbjct: 29 KEFVTSNESTEESSNCETGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARE 88
Query: 392 RQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDEMDN 550
R R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+L +D+ +N
Sbjct: 89 RARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN 142
>ref|XP_003134406.1| PREDICTED: transcription factor 15-like [Sus scrofa].
Length = 197
Score = 64.7 bits (156), Expect = 7e-11
Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +2
Query: 305 PGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQ 481
PG G + + + QR AN RER RTQS+N AF ALR +IPT P D KLSKI+
Sbjct: 51 PGPGGGRRASGGAGPVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIE 110
Query: 482 TLKLAARYIDFLYQVL 529
TL+LA+ YI L VL
Sbjct: 111 TLRLASSYIAHLANVL 126
>ref|XP_001926838.2| PREDICTED: heart- and neural crest derivatives-expressed protein
2-like [Sus scrofa].
Length = 280
Score = 63.9 bits (154), Expect = 1e-10
Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +2
Query: 365 QRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 541
+R AN +ER+RTQS+N AFA LR+ IP +P+D KLSKI+TL+LA YI +L +L D+
Sbjct: 163 RRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDD 222
Query: 542 MDNK 553
+ +
Sbjct: 223 QNGE 226
>ref|XP_001928280.1| PREDICTED: neurogenic differentiation factor 4-like [Sus scrofa].
Length = 331
Score = 61.6 bits (148), Expect = 6e-10
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 12/137 (8%)
Frame = +2
Query: 167 MEEGSSSPVSPVDSLGTSEE--ELERQPKRFGRKRRYSKK--------SSEDGSPTPGKR 316
M E ++P LG+ +E E ER+P +G +++ E+ P +R
Sbjct: 11 MTELVNTPSWMDKGLGSQKEMKEEERRPAAYGMLGSLAEEHDSIEEEEEEEEDGEKPKRR 70
Query: 317 G-KKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTL-PSDKLSKIQTLK 490
G KK + E +++R+ AN RER R LN+A LR+++P + KLSKI+TL+
Sbjct: 71 GPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLR 130
Query: 491 LAARYIDFLYQVLQSDE 541
LA YI L +VL++ +
Sbjct: 131 LARNYIWALSEVLETGQ 147
>ref|XP_003128060.2| PREDICTED: t-cell acute lymphocytic leukemia protein 1-like [Sus
scrofa].
Length = 197
Score = 60.8 bits (146), Expect = 1e-09
Identities = 33/60 (55%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 365 QRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 541
+RI N RER R Q++N AFA LRK+IPT P D KLSK + L+LA +YI+FL ++L E
Sbjct: 54 RRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLNDQE 113
>ref|XP_003359626.1| PREDICTED: neurogenic differentiation factor 1 [Sus scrofa].
Length = 356
Score = 60.1 bits (144), Expect = 2e-09
Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +2
Query: 203 DSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRG-KKGSPSAQSFEELQSQRILA 379
DSL EE E ++ ED P +RG KK + E + +R+ A
Sbjct: 51 DSLRNGGEEEEEDEDL----EEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMKA 106
Query: 380 NVRERQRTQSLNEAFAALRKIIPTL-PSDKLSKIQTLKLAARYIDFLYQVLQS 535
N RER R LN A LRK++P + KLSKI+TL+LA YI L ++L+S
Sbjct: 107 NARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 159
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,959,010
Number of extensions: 578227
Number of successful extensions: 2985
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 2959
Number of HSP's successfully gapped: 24
Length of query: 305
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 206
Effective length of database: 8,879,129
Effective search space: 1829100574
Effective search space used: 1829100574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004876
(916 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1029 0.0
Sscrofa_Chr09 325 2e-86
>Sscrofa_Chr15
|| Length = 157681621
Score = 1029 bits (519), Expect = 0.0
Identities = 519/519 (100%)
Strand = Plus / Plus
Query: 167 atggaggagggctccagctcgcccgtgtcccccgtggacagcctgggcaccagcgaggag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152586390 atggaggagggctccagctcgcccgtgtcccccgtggacagcctgggcaccagcgaggag 152586449
Query: 227 gaactcgagcggcagcccaagcgcttcggccggaagcggcgctacagcaagaagtcgagc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152586450 gaactcgagcggcagcccaagcgcttcggccggaagcggcgctacagcaagaagtcgagc 152586509
Query: 287 gaagatggcagcccgacccccggcaagcgcggcaagaagggcagcccaagcgcgcagtcc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152586510 gaagatggcagcccgacccccggcaagcgcggcaagaagggcagcccaagcgcgcagtcc 152586569
Query: 347 ttcgaggagctgcagagccagcgcatcctggccaacgtgcgcgagcgccagcgcacccag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152586570 ttcgaggagctgcagagccagcgcatcctggccaacgtgcgcgagcgccagcgcacccag 152586629
Query: 407 tcgctcaacgaggccttcgccgcgctacgcaagatcatccccacgctgccctcggacaag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152586630 tcgctcaacgaggccttcgccgcgctacgcaagatcatccccacgctgccctcggacaag 152586689
Query: 467 ctcagcaagatccagacgctcaagctggccgccaggtacatagacttcctctaccaggtc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152586690 ctcagcaagatccagacgctcaagctggccgccaggtacatagacttcctctaccaggtc 152586749
Query: 527 ctgcagagcgacgagatggacaataagatgaccagctgcagctacgtggcccacgagcgt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152586750 ctgcagagcgacgagatggacaataagatgaccagctgcagctacgtggcccacgagcgt 152586809
Query: 587 ctcagctacgccttctccgtgtggcgcatggagggcgcgtggtccatgtccgcctcccac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152586810 ctcagctacgccttctccgtgtggcgcatggagggcgcgtggtccatgtccgcctcccac 152586869
Query: 647 tagcgcctcgccacccacgtccggaccggcgcgtcaggg 685
|||||||||||||||||||||||||||||||||||||||
Sbjct: 152586870 tagcgcctcgccacccacgtccggaccggcgcgtcaggg 152586908
Score = 448 bits (226), Expect = e-123
Identities = 226/226 (100%)
Strand = Plus / Plus
Query: 684 ggctgtcccgcggggctgagcgcaagtggaactggggcacatcggcatccgcgtctgtaa 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152633258 ggctgtcccgcggggctgagcgcaagtggaactggggcacatcggcatccgcgtctgtaa 152633317
Query: 744 cttctgaaacccagagggcctccaggacaccgcccgtcccgtgctccaggaagcgttaga 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152633318 cttctgaaacccagagggcctccaggacaccgcccgtcccgtgctccaggaagcgttaga 152633377
Query: 804 caaggggacagcggcagagcccggacctcggccccccacccctcagagacgcccccagag 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152633378 caaggggacagcggcagagcccggacctcggccccccacccctcagagacgcccccagag 152633437
Query: 864 gcagcggcgcgcactcgcggtccttcttgccggtgacatgtctttt 909
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152633438 gcagcggcgcgcactcgcggtccttcttgccggtgacatgtctttt 152633483
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 gttagaataacttcctctcccggagacctcgtttttgcacaagccggccttgaaatcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152586224 gttagaataacttcctctcccggagacctcgtttttgcacaagccggccttgaaatcaga 152586283
Query: 61 gcctttcgagcaactccgagagcgtgtgctcggcgaccgcgggcttggcca 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152586284 gcctttcgagcaactccgagagcgtgtgctcggcgaccgcgggcttggcca 152586334
>Sscrofa_Chr09
|| Length = 153670197
Score = 325 bits (164), Expect = 2e-86
Identities = 275/312 (88%)
Strand = Plus / Minus
Query: 339 cgcagtccttcgaggagctgcagagccagcgcatcctggccaacgtgcgcgagcgccagc 398
||||||||| |||||||||||||| ||||| || ||||||||||||| ||||||||||
Sbjct: 97328911 cgcagtcctacgaggagctgcagacacagcgggtcatggccaacgtgcgggagcgccagc 97328852
Query: 399 gcacccagtcgctcaacgaggccttcgccgcgctacgcaagatcatccccacgctgccct 458
|||| |||||||| || ||||| |||||||| || | ||||||||||||||||||||||
Sbjct: 97328851 gcacacagtcgctgaatgaggcgttcgccgcactgaggaagatcatccccacgctgccct 97328792
Query: 459 cggacaagctcagcaagatccagacgctcaagctggccgccaggtacatagacttcctct 518
| |||||||| |||||||||||||| |||||| |||| ||||||||||| ||||||||||
Sbjct: 97328791 cagacaagctgagcaagatccagaccctcaagttggcggccaggtacatcgacttcctct 97328732
Query: 519 accaggtcctgcagagcgacgagatggacaataagatgaccagctgcagctacgtggccc 578
|||||||||| ||||| |||||| ||||| |||||| |||| |||||||| |||||||
Sbjct: 97328731 accaggtcctacagagtgacgagctggactccaagatggccagttgcagctatgtggccc 97328672
Query: 579 acgagcgtctcagctacgccttctccgtgtggcgcatggagggcgcgtggtccatgtccg 638
||||||| ||||||||||||||||| |||||| | |||||||| || |||||||||||||
Sbjct: 97328671 acgagcggctcagctacgccttctcggtgtggaggatggagggggcctggtccatgtccg 97328612
Query: 639 cctcccactagc 650
| ||||||||||
Sbjct: 97328611 cgtcccactagc 97328600
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,418,070
Number of extensions: 76
Number of successful extensions: 76
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 4
Length of query: 916
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 895
Effective length of database: 2,808,413,156
Effective search space: 2513529774620
Effective search space used: 2513529774620
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)