Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004882
(995 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192509.1| IBA57, iron-sulfur cluster assembly homolog ... 436 e-122
Alignment gi|XP_002688553.1| PREDICTED: hypothetical protein [Bos taurus]. 436 e-122
>ref|NP_001192509.1| IBA57, iron-sulfur cluster assembly homolog [Bos taurus].
Length = 358
Score = 436 bits (1121), Expect = e-122
Identities = 218/273 (79%), Positives = 226/273 (82%), Gaps = 4/273 (1%)
Frame = +3
Query: 189 CSQSGDPAGGTAWAYFLLGERALVRVRGPDSAXXXXXXXXXXXXXXG----SASAVARAG 356
C Q D A G WA FLLGERALVRVRGPDSA G AS ARAG
Sbjct: 36 CCQGADSASGATWACFLLGERALVRVRGPDSAPFLLGLLTNELPLPGPAVGEASTSARAG 95
Query: 357 YAHFLNVQGRTLYDVILYGLPEHSDEQPTFLLECDSSVLDALQRHLVLHRIRRKVTVEPC 536
YAHFLNVQGRTLYDVILYGLPE S EQPTFLLECDSSV+DALQRHL+LH+IRRKVTVEPC
Sbjct: 96 YAHFLNVQGRTLYDVILYGLPERSSEQPTFLLECDSSVVDALQRHLLLHKIRRKVTVEPC 155
Query: 537 PELRVWAVLPCAPEEAGRSVPLQEKAQCTTILTRDPRTARMGWRLLSQDEGSALVPGGRP 716
PELRVWAVLPCA EAG + PL++K C +LTRDPRT RMGWRLLSQDEGSALVPGGR
Sbjct: 156 PELRVWAVLPCAQREAGGAGPLRKKTVCAPVLTRDPRTYRMGWRLLSQDEGSALVPGGRL 215
Query: 717 GDLQDYHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHHTG 896
GDLQDYHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHH G
Sbjct: 216 GDLQDYHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHHMG 275
Query: 897 VIRKRLFPVQLSGRLPVGSIAPGTSVLTESGQA 995
VIRKRLFPVQ SG +P G IAPG SVLTESGQA
Sbjct: 276 VIRKRLFPVQFSGAVPGGGIAPGASVLTESGQA 308
>ref|XP_002688553.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 358
Score = 436 bits (1121), Expect = e-122
Identities = 218/273 (79%), Positives = 226/273 (82%), Gaps = 4/273 (1%)
Frame = +3
Query: 189 CSQSGDPAGGTAWAYFLLGERALVRVRGPDSAXXXXXXXXXXXXXXG----SASAVARAG 356
C Q D A G WA FLLGERALVRVRGPDSA G AS ARAG
Sbjct: 36 CCQGADSASGATWACFLLGERALVRVRGPDSAPFLLGLLTNELPLPGPAVGEASTSARAG 95
Query: 357 YAHFLNVQGRTLYDVILYGLPEHSDEQPTFLLECDSSVLDALQRHLVLHRIRRKVTVEPC 536
YAHFLNVQGRTLYDVILYGLPE S EQPTFLLECDSSV+DALQRHL+LH+IRRKVTVEPC
Sbjct: 96 YAHFLNVQGRTLYDVILYGLPERSSEQPTFLLECDSSVVDALQRHLLLHKIRRKVTVEPC 155
Query: 537 PELRVWAVLPCAPEEAGRSVPLQEKAQCTTILTRDPRTARMGWRLLSQDEGSALVPGGRP 716
PELRVWAVLPCA EAG + PL++K C +LTRDPRT RMGWRLLSQDEGSALVPGGR
Sbjct: 156 PELRVWAVLPCAQREAGGAGPLRKKTVCAPVLTRDPRTYRMGWRLLSQDEGSALVPGGRL 215
Query: 717 GDLQDYHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHHTG 896
GDLQDYHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHH G
Sbjct: 216 GDLQDYHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHHMG 275
Query: 897 VIRKRLFPVQLSGRLPVGSIAPGTSVLTESGQA 995
VIRKRLFPVQ SG +P G IAPG SVLTESGQA
Sbjct: 276 VIRKRLFPVQFSGAVPGGGIAPGASVLTESGQA 308
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,354,316
Number of extensions: 1317718
Number of successful extensions: 8877
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8757
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004882
(995 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539326.2| PREDICTED: similar to CG8043-PA [Canis familiar... 314 9e-86
>ref|XP_539326.2| PREDICTED: similar to CG8043-PA [Canis familiaris].
Length = 276
Score = 314 bits (804), Expect = 9e-86
Identities = 154/195 (78%), Positives = 169/195 (86%)
Frame = +3
Query: 408 YGLPEHSDEQPTFLLECDSSVLDALQRHLVLHRIRRKVTVEPCPELRVWAVLPCAPEEAG 587
YGLPE DE P FLLECDS+VL ALQ HL L++IRRKV VEPCPELRVWAVLP +PE+AG
Sbjct: 32 YGLPE-LDEAPAFLLECDSAVLGALQGHLALYKIRRKVKVEPCPELRVWAVLPSSPEDAG 90
Query: 588 RSVPLQEKAQCTTILTRDPRTARMGWRLLSQDEGSALVPGGRPGDLQDYHRHRYQQGVPE 767
+VPL E+A TILTRDPRTA MGWRLL+Q+EG ALVP G+ GDL+DYHRHRY+QGVPE
Sbjct: 91 GAVPLWEQANGATILTRDPRTACMGWRLLTQEEGLALVPRGQLGDLRDYHRHRYRQGVPE 150
Query: 768 GVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHHTGVIRKRLFPVQLSGRLPV 947
G+ DLPPGVALPLESNLAFMNG+SFTKGCYIGQELTARTHH GVIRKRLFPVQLSG LP
Sbjct: 151 GIRDLPPGVALPLESNLAFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPVQLSGPLPA 210
Query: 948 GSIAPGTSVLTESGQ 992
I PGT+VL ESGQ
Sbjct: 211 SGITPGTTVLMESGQ 225
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,939,860
Number of extensions: 1347200
Number of successful extensions: 9117
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8975
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004882
(995 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001010867.1| putative transferase CAF17, mitochondrial pr... 369 e-102
>ref|NP_001010867.1| putative transferase CAF17, mitochondrial precursor [Homo sapiens].
Length = 356
Score = 369 bits (948), Expect = e-102
Identities = 193/273 (70%), Positives = 206/273 (75%), Gaps = 4/273 (1%)
Frame = +3
Query: 186 SCSQSGDPAGGTAWAYFLLGERALVRVRGPDSAXXXXXXXXXXXXXXGSASA----VARA 353
SCS GDP G AWA F L R L+RVRGPD+A A+A ARA
Sbjct: 35 SCSPGGDPTAGAAWACFRLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARA 94
Query: 354 GYAHFLNVQGRTLYDVILYGLPEHSDEQPTFLLECDSSVLDALQRHLVLHRIRRKVTVEP 533
GYAHFLNVQGRTLYDVILYGL EHS E FLLECDSSV ALQ+HL L+RIRRKVTVEP
Sbjct: 95 GYAHFLNVQGRTLYDVILYGLQEHS-EVSGFLLECDSSVQGALQKHLALYRIRRKVTVEP 153
Query: 534 CPELRVWAVLPCAPEEAGRSVPLQEKAQCTTILTRDPRTARMGWRLLSQDEGSALVPGGR 713
PELRVWAVLP +PE G + LQE+A IL RDPRTARMGWRLL+QDEG ALVPGGR
Sbjct: 154 HPELRVWAVLPSSPEACG-AASLQERAGAAAILIRDPRTARMGWRLLTQDEGPALVPGGR 212
Query: 714 PGDLQDYHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHHT 893
GDL DYH+HRY QGVPEGV DLPPGVALPLESNLAFMNG+SFTKGCYIGQELTARTHH
Sbjct: 213 LGDLWDYHQHRYLQGVPEGVRDLPPGVALPLESNLAFMNGVSFTKGCYIGQELTARTHHM 272
Query: 894 GVIRKRLFPVQLSGRLPVGSIAPGTSVLTESGQ 992
GVIRKRLFPV+ LP I PG +VLT SGQ
Sbjct: 273 GVIRKRLFPVRFLDPLPTSGITPGATVLTASGQ 305
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,970,254
Number of extensions: 1305415
Number of successful extensions: 8727
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8565
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004882
(995 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776146.1| putative transferase CAF17 homolog, mitochondri... 360 e-100
>ref|NP_776146.1| putative transferase CAF17 homolog, mitochondrial precursor [Mus
musculus].
Length = 358
Score = 360 bits (925), Expect = e-100
Identities = 181/269 (67%), Positives = 211/269 (78%), Gaps = 5/269 (1%)
Frame = +3
Query: 204 DPAGGTAWAYFLLGERALVRVRGPDSAXXXXXXXXXXXXXXG----SASAVARAGYAHFL 371
+PA G AW F L RALVRVRGPD+A G +A ARA YAHFL
Sbjct: 41 NPADGVAWTCFRLDGRALVRVRGPDAAPFLLGLSTNELPLSGPPTGAAQPSARAAYAHFL 100
Query: 372 NVQGRTLYDVILYGLPEHSDEQPTFLLECDSSVLDALQRHLVLHRIRRKVTVEPCPELRV 551
NVQGRTLYDVILYGLPE ++ P+FLLECDSSVL ALQ+HL +++IRRKVTVEP PEL V
Sbjct: 101 NVQGRTLYDVILYGLPECTEGAPSFLLECDSSVLGALQKHLSMYKIRRKVTVEPSPELHV 160
Query: 552 WAVLPCAPEEAGRSVPLQEKAQCTTILTRDPRTARMGWRLLSQDEGSALVPGGRPGDLQD 731
WAVLPC P+ + + PL+E+ + TT+L RDPRTARMGWRLL+QD+G ALVP G+ GDLQD
Sbjct: 161 WAVLPCVPQTS-ETAPLEERVEGTTMLIRDPRTARMGWRLLTQDDGPALVPRGQLGDLQD 219
Query: 732 YHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHHTGVIRKR 911
YH++RYQQG+PEGV DLPPG+ALPLESNL FMNG+SFTKGCYIGQELTARTHHTGVIRKR
Sbjct: 220 YHKYRYQQGIPEGVCDLPPGMALPLESNLVFMNGVSFTKGCYIGQELTARTHHTGVIRKR 279
Query: 912 LFPVQLSGRLPVGSIAPGTSV-LTESGQA 995
LFPV+L G LP ++PG V +T +GQA
Sbjct: 280 LFPVKLEGPLPASGVSPGAIVTVTATGQA 308
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,256,209
Number of extensions: 1062901
Number of successful extensions: 6384
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6290
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004882
(995 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123660.1| PREDICTED: putative transferase CAF17 homolo... 523 e-149
>ref|XP_003123660.1| PREDICTED: putative transferase CAF17 homolog, mitochondrial-like
[Sus scrofa].
Length = 354
Score = 523 bits (1347), Expect = e-149
Identities = 258/272 (94%), Positives = 258/272 (94%)
Frame = +3
Query: 180 QGSCSQSGDPAGGTAWAYFLLGERALVRVRGPDSAXXXXXXXXXXXXXXGSASAVARAGY 359
QGSCSQSGDPAGGTAWAYFLLGERALVRVRGPDSA GSASAVARAGY
Sbjct: 33 QGSCSQSGDPAGGTAWAYFLLGERALVRVRGPDSAPFLLGLLTNELPLPGSASAVARAGY 92
Query: 360 AHFLNVQGRTLYDVILYGLPEHSDEQPTFLLECDSSVLDALQRHLVLHRIRRKVTVEPCP 539
AHFLNVQGRTLYDVILYGLPEHSDEQPTFLLECDSSVLDALQRHLVLHRIRRKVTVEPCP
Sbjct: 93 AHFLNVQGRTLYDVILYGLPEHSDEQPTFLLECDSSVLDALQRHLVLHRIRRKVTVEPCP 152
Query: 540 ELRVWAVLPCAPEEAGRSVPLQEKAQCTTILTRDPRTARMGWRLLSQDEGSALVPGGRPG 719
ELRVWAVLPCAPEEAGRSVPLQEKAQCTTILTRDPRTARMGWRLLSQDEGSALVPGGRPG
Sbjct: 153 ELRVWAVLPCAPEEAGRSVPLQEKAQCTTILTRDPRTARMGWRLLSQDEGSALVPGGRPG 212
Query: 720 DLQDYHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHHTGV 899
DLQDYHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHHTGV
Sbjct: 213 DLQDYHRHRYQQGVPEGVHDLPPGVALPLESNLAFMNGISFTKGCYIGQELTARTHHTGV 272
Query: 900 IRKRLFPVQLSGRLPVGSIAPGTSVLTESGQA 995
IRKRLFPVQLSGRLPVGSIAPGTSVLTESGQA
Sbjct: 273 IRKRLFPVQLSGRLPVGSIAPGTSVLTESGQA 304
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,121,277
Number of extensions: 856135
Number of successful extensions: 5956
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5876
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004882
(995 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 817 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 817 bits (412), Expect = 0.0
Identities = 412/412 (100%)
Strand = Plus / Minus
Query: 2 ctcgtccgcctacagcaggtactgtggcgcctgcccgcgccgccgcacggagccccttcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835809 ctcgtccgcctacagcaggtactgtggcgcctgcccgcgccgccgcacggagccccttcc 53835750
Query: 62 cgccgcctcgctcctccccaagatggcggctgcggcgctgctccggggcgcggcttcagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835749 cgccgcctcgctcctccccaagatggcggctgcggcgctgctccggggcgcggcttcagg 53835690
Query: 122 gcgcagcggcctagcctggcactggaggctgcgcgcggccccgaggcgccgcctggctca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835689 gcgcagcggcctagcctggcactggaggctgcgcgcggccccgaggcgccgcctggctca 53835630
Query: 182 aggttcctgctctcagagtggtgaccccgcgggcggtacggcctgggcctacttcctgct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835629 aggttcctgctctcagagtggtgaccccgcgggcggtacggcctgggcctacttcctgct 53835570
Query: 242 gggcgagcgcgccctggtacgcgtgcgcgggccggactcggcgccctttctcctgggtct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835569 gggcgagcgcgccctggtacgcgtgcgcgggccggactcggcgccctttctcctgggtct 53835510
Query: 302 gctgaccaatgagttgccgcttccgggttccgcttcggccgtggcgcgcgcgggctacgc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835509 gctgaccaatgagttgccgcttccgggttccgcttcggccgtggcgcgcgcgggctacgc 53835450
Query: 362 ccactttcttaacgtccagggacgcacactctatgacgtcattctctacggg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53835449 ccactttcttaacgtccagggacgcacactctatgacgtcattctctacggg 53835398
Score = 809 bits (408), Expect = 0.0
Identities = 411/412 (99%)
Strand = Plus / Minus
Query: 2 ctcgtccgcctacagcaggtactgtggcgcctgcccgcgccgccgcacggagccccttcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78563606 ctcgtccgcctacagcaggtactgtggcgcctgcccgcgccgccgcacggagccccttcc 78563547
Query: 62 cgccgcctcgctcctccccaagatggcggctgcggcgctgctccggggcgcggcttcagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78563546 cgccgcctcgctcctccccaagatggcggctgcggcgctgctccggggcgcggcttcagg 78563487
Query: 122 gcgcagcggcctagcctggcactggaggctgcgcgcggccccgaggcgccgcctggctca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78563486 gcgcagcggcctagcctggcactggaggctgcgcgcggccccgaggcgccgcctggctca 78563427
Query: 182 aggttcctgctctcagagtggtgaccccgcgggcggtacggcctgggcctacttcctgct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78563426 aggttcctgctctcagagtggtgaccccgcgggcggtacggcctgggcctacttcctgct 78563367
Query: 242 gggcgagcgcgccctggtacgcgtgcgcgggccggactcggcgccctttctcctgggtct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78563366 gggcgagcgcgccctggtacgcgtgcgcgggccggactcggcgccctttctcctgggtct 78563307
Query: 302 gctgaccaatgagttgccgcttccgggttccgcttcggccgtggcgcgcgcgggctacgc 361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 78563306 gctgaccaatgagttgccgcttccgggtcccgcttcggccgtggcgcgcgcgggctacgc 78563247
Query: 362 ccactttcttaacgtccagggacgcacactctatgacgtcattctctacggg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78563246 ccactttcttaacgtccagggacgcacactctatgacgtcattctctacggg 78563195
Score = 692 bits (349), Expect = 0.0
Identities = 349/349 (100%)
Strand = Plus / Minus
Query: 412 ggcttcctgagcactccgatgagcagcctaccttcctcctggagtgtgacagctcagtgc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53826672 ggcttcctgagcactccgatgagcagcctaccttcctcctggagtgtgacagctcagtgc 53826613
Query: 472 tggatgcgctgcagaggcacctggtgctgcacaggatccggcggaaagtcacggtggagc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53826612 tggatgcgctgcagaggcacctggtgctgcacaggatccggcggaaagtcacggtggagc 53826553
Query: 532 catgccctgagctacgtgtgtgggctgtgctgccctgtgcccctgaggaggctggcaggt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53826552 catgccctgagctacgtgtgtgggctgtgctgccctgtgcccctgaggaggctggcaggt 53826493
Query: 592 ctgtgcccctgcaggagaaggcccagtgcaccaccatcctcacccgtgatccccggactg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53826492 ctgtgcccctgcaggagaaggcccagtgcaccaccatcctcacccgtgatccccggactg 53826433
Query: 652 cccgcatgggctggcggcttctctcccaggatgagggctctgccctggtgcccgggggcc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53826432 cccgcatgggctggcggcttctctcccaggatgagggctctgccctggtgcccgggggcc 53826373
Query: 712 gacctggggacctccaggattatcaccgacaccggtaccagcaaggtgt 760
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53826372 gacctggggacctccaggattatcaccgacaccggtaccagcaaggtgt 53826324
Score = 478 bits (241), Expect = e-132
Identities = 241/241 (100%)
Strand = Plus / Minus
Query: 755 aggtgttcccgaaggggtccacgacctgcccccaggagtggccctacctctggagtccaa 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53825900 aggtgttcccgaaggggtccacgacctgcccccaggagtggccctacctctggagtccaa 53825841
Query: 815 cctggccttcatgaatggcatcagcttcaccaagggttgctacattggccaggaactgac 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53825840 cctggccttcatgaatggcatcagcttcaccaagggttgctacattggccaggaactgac 53825781
Query: 875 ggcccgcacccaccatacaggtgtcatccgaaaacgcctcttcccagtacagctctcagg 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53825780 ggcccgcacccaccatacaggtgtcatccgaaaacgcctcttcccagtacagctctcagg 53825721
Query: 935 ccgcctccctgtgggcagcattgctcctggcacctctgtgctcactgagtccgggcaggc 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53825720 ccgcctccctgtgggcagcattgctcctggcacctctgtgctcactgagtccgggcaggc 53825661
Query: 995 a 995
|
Sbjct: 53825660 a 53825660
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,484,809
Number of extensions: 154
Number of successful extensions: 154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 4
Length of query: 995
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 974
Effective length of database: 2,808,413,156
Effective search space: 2735394413944
Effective search space used: 2735394413944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)