Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004916
(933 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094537.1| ubiquitin-like modifier-activating enzyme 5 ... 431 e-121
Alignment gi|NP_001076850.1| SUMO-activating enzyme subunit 2 [Bos taurus]. 50 4e-06
>ref|NP_001094537.1| ubiquitin-like modifier-activating enzyme 5 [Bos taurus].
Length = 404
Score = 431 bits (1109), Expect = e-121
Identities = 217/240 (90%), Positives = 222/240 (92%)
Frame = +1
Query: 214 MAESVERLQQRIQELERELAQERSRQVVGDRDGKGGRTRIEKMSPEVVDSNPYSRLMALK 393
MAESVERLQQR++ELERELAQERSR+ +G DG GGR RIEKMS EVVDSNPYSRLMALK
Sbjct: 1 MAESVERLQQRVEELERELAQERSRRALGSGDGGGGRARIEKMSSEVVDSNPYSRLMALK 60
Query: 394 RMGIVSDYEKIRTFAVAIXXXXXXXXXTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP 573
RMGIVSDYEKIRTF VAI TAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP
Sbjct: 61 RMGIVSDYEKIRTFTVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP 120
Query: 574 HQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLEEGKPVDLVLS 753
HQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFM+RISNGGLEEGKPVDLVLS
Sbjct: 121 HQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMNRISNGGLEEGKPVDLVLS 180
Query: 754 CVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGRSACFACAPPLVVAXNID 933
CVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPG SACFACAPPLVVA NID
Sbjct: 181 CVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANID 240
>ref|NP_001076850.1| SUMO-activating enzyme subunit 2 [Bos taurus].
Length = 640
Score = 49.7 bits (117), Expect = 4e-06
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Frame = +1
Query: 487 LTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 663
L G + L D D ++++N+NR F FQ G SK Q A+ ++ P ++ +
Sbjct: 36 LVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95
Query: 664 ITTVE-NFEHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSE 840
I + N E F I LV++ +DN AR +N C +ESG +
Sbjct: 96 IMNPDYNVEFFRQFI------------LVMNALDNRAARNHVNRMCLAADVPLIESGTA- 142
Query: 841 NAVSGHIQLIIPGRSACFACAP 906
G + I G + C+ C P
Sbjct: 143 -GYLGQVTTIKKGVTECYECHP 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,147,195
Number of extensions: 726433
Number of successful extensions: 2626
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2609
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,306,398
Effective search space: 2990037182
Effective search space used: 2990037182
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004916
(933 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542784.2| PREDICTED: similar to ubiquitin-activating enzy... 428 e-120
Alignment gi|XP_543052.1| PREDICTED: similar to Molybdenum cofactor synth... 55 9e-08
>ref|XP_542784.2| PREDICTED: similar to ubiquitin-activating enzyme E1-domain
containing 1 isoform 1 [Canis familiaris].
Length = 427
Score = 428 bits (1101), Expect = e-120
Identities = 216/241 (89%), Positives = 222/241 (92%)
Frame = +1
Query: 211 AMAESVERLQQRIQELERELAQERSRQVVGDRDGKGGRTRIEKMSPEVVDSNPYSRLMAL 390
AMAE V+RLQQR++ELER LAQERSR+ VG DG GGR RIEKMS EVVDSNPYSRLMAL
Sbjct: 23 AMAEPVQRLQQRVEELERALAQERSRRAVGGGDGGGGRVRIEKMSSEVVDSNPYSRLMAL 82
Query: 391 KRMGIVSDYEKIRTFAVAIXXXXXXXXXTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQ 570
KRMGIVSDYEKIRTFAVAI TAEMLTRCGIGKLLLFDYDKVELANMNRLFFQ
Sbjct: 83 KRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQ 142
Query: 571 PHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLEEGKPVDLVL 750
PHQAGLSKVQAAE+TLRNINPDVLFEVHNYNITTVENF+HFMDRISNGGLEEGKPVDLVL
Sbjct: 143 PHQAGLSKVQAAEYTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVL 202
Query: 751 SCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGRSACFACAPPLVVAXNI 930
SCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPG SACFACAPPLVVA NI
Sbjct: 203 SCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANI 262
Query: 931 D 933
D
Sbjct: 263 D 263
>ref|XP_543052.1| PREDICTED: similar to Molybdenum cofactor synthesis protein 3
(Molybdopterin synthase sulfurylase) (MPT synthase
sulfurylase) [Canis familiaris].
Length = 458
Score = 55.1 bits (131), Expect = 9e-08
Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 5/238 (2%)
Frame = +1
Query: 211 AMAESVERLQQRIQELERELAQERSRQVVGDRDGKGGRTRIEKMSPEVVDSNP----YSR 378
A+ V R ++ + L++ LA + +R R + + P+ S YSR
Sbjct: 9 ALQAEVARREEELSSLKQRLAAALLAEQAPER-----RVPVSPLPPKAALSREEILRYSR 63
Query: 379 LMALKRMGIVSDYEKIRTFAVAIXXXXXXXXXTAEMLTRCGIGKLLLFDYDKVELANMNR 558
+ L +G+ ++ +V + A+ L G+G+L L DYD VE++N+ R
Sbjct: 64 QLVLPELGVHGQL-RLAAASVLVVGCGGLGCPLAQYLAAAGVGRLGLVDYDVVEMSNLAR 122
Query: 559 LFFQPHQ-AGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLEEGKP 735
AG +K +A +LR +N + VE + L+ +
Sbjct: 123 QVLHGEALAGQAKAFSAAASLRRLN------------SAVECVPYAQALTPATALDLVRR 170
Query: 736 VDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGRSACFACAPP 909
D+V C DN R +N AC G+ + + S G I + C+ C P
Sbjct: 171 YDVVADCSDNVPTRYLVNDACVLAGRPLVSA--SALRFEGQITVYHYDGGPCYRCVFP 226
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,475,011
Number of extensions: 747852
Number of successful extensions: 2656
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2633
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 208
Effective length of database: 15,440,896
Effective search space: 3211706368
Effective search space used: 3211706368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004916
(933 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079094.1| ubiquitin-like modifier-activating enzyme 5 iso... 431 e-121
Alignment gi|NP_938143.1| ubiquitin-like modifier-activating enzyme 5 iso... 346 2e-95
Alignment gi|NP_055299.1| adenylyltransferase and sulfurtransferase MOCS3... 55 7e-08
Alignment gi|NP_005490.1| SUMO-activating enzyme subunit 2 [Homo sapiens]. 50 4e-06
>ref|NP_079094.1| ubiquitin-like modifier-activating enzyme 5 isoform 1 [Homo
sapiens].
Length = 404
Score = 431 bits (1108), Expect = e-121
Identities = 219/240 (91%), Positives = 221/240 (92%)
Frame = +1
Query: 214 MAESVERLQQRIQELERELAQERSRQVVGDRDGKGGRTRIEKMSPEVVDSNPYSRLMALK 393
MAESVERLQQR+QELERELAQERS QV DG GGR RIEKMS EVVDSNPYSRLMALK
Sbjct: 1 MAESVERLQQRVQELERELAQERSLQVPRSGDGGGGRVRIEKMSSEVVDSNPYSRLMALK 60
Query: 394 RMGIVSDYEKIRTFAVAIXXXXXXXXXTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP 573
RMGIVSDYEKIRTFAVAI TAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP
Sbjct: 61 RMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP 120
Query: 574 HQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLEEGKPVDLVLS 753
HQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENF+HFMDRISNGGLEEGKPVDLVLS
Sbjct: 121 HQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLS 180
Query: 754 CVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGRSACFACAPPLVVAXNID 933
CVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPG SACFACAPPLVVA NID
Sbjct: 181 CVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANID 240
>ref|NP_938143.1| ubiquitin-like modifier-activating enzyme 5 isoform 2 [Homo
sapiens].
Length = 348
Score = 346 bits (887), Expect = 2e-95
Identities = 172/184 (93%), Positives = 173/184 (94%)
Frame = +1
Query: 382 MALKRMGIVSDYEKIRTFAVAIXXXXXXXXXTAEMLTRCGIGKLLLFDYDKVELANMNRL 561
MALKRMGIVSDYEKIRTFAVAI TAEMLTRCGIGKLLLFDYDKVELANMNRL
Sbjct: 1 MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 60
Query: 562 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLEEGKPVD 741
FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENF+HFMDRISNGGLEEGKPVD
Sbjct: 61 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVD 120
Query: 742 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGRSACFACAPPLVVA 921
LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPG SACFACAPPLVVA
Sbjct: 121 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 180
Query: 922 XNID 933
NID
Sbjct: 181 ANID 184
>ref|NP_055299.1| adenylyltransferase and sulfurtransferase MOCS3 [Homo sapiens].
Length = 460
Score = 55.5 bits (132), Expect = 7e-08
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 9/242 (3%)
Frame = +1
Query: 211 AMAESVERLQQRIQELEREL---AQERSRQVVGDRDGKGGR-TRIEKMSPEVVDSNP--- 369
A E V LQ + + E EL Q+ + ++ +++ + R + + P+ S
Sbjct: 2 ASREEVLALQAEVAQREEELNSLKQKLASALLAEQEPQPERLVPVSPLPPKAALSRDEIL 61
Query: 370 -YSRLMALKRMGIVSDYEKIRTFAVAIXXXXXXXXXTAEMLTRCGIGKLLLFDYDKVELA 546
YSR + L +G+ ++ T V I A+ L G+G+L L DYD VE++
Sbjct: 62 RYSRQLVLPELGVHGQL-RLGTACVLIVGCGGLGCPLAQYLAAAGVGRLGLVDYDVVEMS 120
Query: 547 NMNRLFFQPHQ-AGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLE 723
N+ R AG +K +A +LR +N V + +T L+
Sbjct: 121 NLARQVLHGEALAGQAKAFSAAASLRRLNSAVECVPYTQALTPAT------------ALD 168
Query: 724 EGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGRSACFACA 903
+ D+V C DN R +N AC G+ + + S G I + C+ C
Sbjct: 169 LVRRYDVVADCSDNVPTRYLVNDACVLAGRPLVSA--SALRFEGQITVYHYDGGPCYRCI 226
Query: 904 PP 909
P
Sbjct: 227 FP 228
>ref|NP_005490.1| SUMO-activating enzyme subunit 2 [Homo sapiens].
Length = 640
Score = 49.7 bits (117), Expect = 4e-06
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Frame = +1
Query: 487 LTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 663
L G + L D D ++++N+NR F FQ G SK Q A+ ++ P ++ +
Sbjct: 36 LVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95
Query: 664 ITTVE-NFEHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSE 840
I + N E F I LV++ +DN AR +N C +ESG +
Sbjct: 96 IMNPDYNVEFFRQFI------------LVMNALDNRAARNHVNRMCLAADVPLIESGTA- 142
Query: 841 NAVSGHIQLIIPGRSACFACAP 906
G + I G + C+ C P
Sbjct: 143 -GYLGQVTTIKKGVTECYECHP 163
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,932,392
Number of extensions: 739729
Number of successful extensions: 2519
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2510
Number of HSP's successfully gapped: 4
Length of query: 311
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,934,836
Effective search space: 3121380724
Effective search space used: 3121380724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004916
(933 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079968.2| ubiquitin-like modifier-activating enzyme 5 [Mu... 401 e-112
Alignment gi|NP_057891.1| SUMO-activating enzyme subunit 2 [Mus musculus]. 56 3e-08
Alignment gi|NP_001153802.1| adenylyltransferase and sulfurtransferase MO... 56 5e-08
>ref|NP_079968.2| ubiquitin-like modifier-activating enzyme 5 [Mus musculus].
Length = 403
Score = 401 bits (1030), Expect = e-112
Identities = 202/240 (84%), Positives = 220/240 (91%)
Frame = +1
Query: 214 MAESVERLQQRIQELERELAQERSRQVVGDRDGKGGRTRIEKMSPEVVDSNPYSRLMALK 393
MA+SVERL+QR++ELE+ELA+ER+R+ GD G GRTRI++MS EV+DSNPYSRLMALK
Sbjct: 1 MADSVERLRQRVEELEQELARERTRRSGGD--GHCGRTRIQEMSDEVLDSNPYSRLMALK 58
Query: 394 RMGIVSDYEKIRTFAVAIXXXXXXXXXTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP 573
RMGIVSDY+KIRT+AVAI TAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP
Sbjct: 59 RMGIVSDYKKIRTYAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP 118
Query: 574 HQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLEEGKPVDLVLS 753
+QAGLSKV AAEHTLRNINPDVLFEVHNYNITTVE+FEHFM+RISNGGLEEG+PVDLVLS
Sbjct: 119 YQAGLSKVHAAEHTLRNINPDVLFEVHNYNITTVEHFEHFMNRISNGGLEEGQPVDLVLS 178
Query: 754 CVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGRSACFACAPPLVVAXNID 933
CVDNFEARM INTACNELGQTWMESGVSENAVSGHIQL+IPG SACFACAPPLVVA NID
Sbjct: 179 CVDNFEARMAINTACNELGQTWMESGVSENAVSGHIQLMIPGESACFACAPPLVVASNID 238
>ref|NP_057891.1| SUMO-activating enzyme subunit 2 [Mus musculus].
Length = 638
Score = 56.2 bits (134), Expect = 3e-08
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Frame = +1
Query: 487 LTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 663
L G + L D D ++++N+NR F FQ G SK Q A+ ++ +P E H+ +
Sbjct: 36 LVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFHPQANIEAHHDS 95
Query: 664 ITTVE-NFEHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSE 840
I + N E F I LV++ +DN AR +N C +ESG +
Sbjct: 96 IMNPDYNVEFFRQFI------------LVMNALDNRAARNHVNRMCLAADVPLIESGTA- 142
Query: 841 NAVSGHIQLIIPGRSACFACAP 906
G + I G + C+ C P
Sbjct: 143 -GYLGQVTTIKKGVTECYECHP 163
>ref|NP_001153802.1| adenylyltransferase and sulfurtransferase MOCS3 [Mus musculus].
Length = 460
Score = 55.8 bits (133), Expect = 5e-08
Identities = 62/242 (25%), Positives = 94/242 (38%), Gaps = 9/242 (3%)
Frame = +1
Query: 211 AMAESVERLQQRIQELERELAQERSRQVVG----DRDGKGGRTRIEKMSPEVVDSNP--- 369
A E V LQ I E ELA + R + R ++P S
Sbjct: 2 AAPEDVAALQAEITRREEELASLKRRLAAALTAEPEPERPLRVPPPPLAPRAALSRDEIL 61
Query: 370 -YSRLMALKRMGIVSDYEKIRTFAVAIXXXXXXXXXTAEMLTRCGIGKLLLFDYDKVELA 546
YSR + L +G+ ++ AV + A+ L G+G+L L D+D VE +
Sbjct: 62 RYSRQLLLPELGVRGQL-RLAAAAVLVVGCGGLGCPLAQYLAAAGVGRLGLVDHDVVETS 120
Query: 547 NMNR-LFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLE 723
N+ R + QAG SK ++A LR +N V E Y E++ L+
Sbjct: 121 NLARQVLHGEAQAGESKARSAAAALRRLNSAV--ECVAYPRALAEDW----------ALD 168
Query: 724 EGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGRSACFACA 903
+ D+V C DN R +N AC G+ + + S G + + C+ C
Sbjct: 169 LVRGYDVVADCCDNVPTRYLVNDACVLAGRPLVSA--SALRFEGQMTVYHHDGGPCYRCV 226
Query: 904 PP 909
P
Sbjct: 227 FP 228
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,163,527
Number of extensions: 625807
Number of successful extensions: 2161
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2151
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 210
Effective length of database: 12,583,923
Effective search space: 2642623830
Effective search space used: 2642623830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004916
(933 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132469.2| PREDICTED: ubiquitin-like modifier-activatin... 261 5e-70
Alignment gi|XP_001924889.3| PREDICTED: hypothetical protein LOC100156531... 171 7e-43
Alignment gi|NP_001095289.1| adenylyltransferase and sulfurtransferase MO... 59 5e-09
>ref|XP_003132469.2| PREDICTED: ubiquitin-like modifier-activating enzyme 5-like [Sus
scrofa].
Length = 292
Score = 261 bits (666), Expect = 5e-70
Identities = 126/128 (98%), Positives = 126/128 (98%)
Frame = +1
Query: 550 MNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLEEG 729
MNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLEEG
Sbjct: 1 MNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLEEG 60
Query: 730 KPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGRSACFACAPP 909
KPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPG SACFACAPP
Sbjct: 61 KPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPP 120
Query: 910 LVVAXNID 933
LVVA NID
Sbjct: 121 LVVAANID 128
>ref|XP_001924889.3| PREDICTED: hypothetical protein LOC100156531 [Sus scrofa].
Length = 282
Score = 171 bits (432), Expect = 7e-43
Identities = 89/99 (89%), Positives = 90/99 (90%)
Frame = +1
Query: 214 MAESVERLQQRIQELERELAQERSRQVVGDRDGKGGRTRIEKMSPEVVDSNPYSRLMALK 393
MAESVERLQQRIQELERELAQERSRQV+GDRDGKGGRTRIEKMSPEVVDSNPYSRLMALK
Sbjct: 1 MAESVERLQQRIQELERELAQERSRQVLGDRDGKGGRTRIEKMSPEVVDSNPYSRLMALK 60
Query: 394 RMGIVSDYEKIRTFAVAIXXXXXXXXXTAEMLTRCGIGK 510
RMGIVSDYEKIRTFAVAI TAEMLTRCGIGK
Sbjct: 61 RMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGK 99
>ref|NP_001095289.1| adenylyltransferase and sulfurtransferase MOCS3 [Sus scrofa].
Length = 455
Score = 58.5 bits (140), Expect = 5e-09
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 8/241 (3%)
Frame = +1
Query: 211 AMAESVERLQQRIQELERELAQERSR---QVVGDRDGKGGRTRIEKMSPEVVDSNP---- 369
A E V LQ + E EL+ + R ++ +++ + + + P+ S
Sbjct: 2 AAREEVLALQAEVARREEELSSLKHRLAAALLAEQESER-LLPVSPLPPKAALSQDEILR 60
Query: 370 YSRLMALKRMGIVSDYEKIRTFAVAIXXXXXXXXXTAEMLTRCGIGKLLLFDYDKVELAN 549
YSR + L +G+ ++ T +V I A+ L G+G+L L DYD VE++N
Sbjct: 61 YSRQLVLPELGVQGQL-RLATASVLIVGCGGLGCPLAQYLAAAGVGRLGLVDYDVVEVSN 119
Query: 550 MNRLFFQPHQ-AGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMDRISNGGLEE 726
+ R AG +KV +A +LR +N + VE + L+
Sbjct: 120 LARQVLHGEALAGQAKVFSAAASLRRLN------------SAVECVPYAQALTPATALDL 167
Query: 727 GKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGRSACFACAP 906
+ D+V C DN R +N AC G+ + + S G I + G C+ C
Sbjct: 168 VRRYDVVADCSDNVPTRYLVNDACVLAGRPLVSA--SALRFEGQITVYHYGGGPCYRCVF 225
Query: 907 P 909
P
Sbjct: 226 P 226
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,048,915
Number of extensions: 465713
Number of successful extensions: 1680
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1672
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 212
Effective length of database: 8,879,129
Effective search space: 1882375348
Effective search space used: 1882375348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004916
(933 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 327 6e-87
>Sscrofa_Chr13
|| Length = 218635234
Score = 327 bits (165), Expect = 6e-87
Identities = 168/169 (99%)
Strand = Plus / Plus
Query: 206 tcccagccatggccgagtctgtggagcggctgcagcagcggatccaggaactggaacggg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81403860 tcccagccatggccgagtctgtggagcggctgcagcagcggatccaggaactggaacggg 81403919
Query: 266 aactggcccaggagagaagtcgccaggtcgtgggggaccgcgacggaaaaggcggtcgga 325
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 81403920 aactggcccaggagagaagtcgccaggtcctgggggaccgcgacggaaaaggcggtcgga 81403979
Query: 326 cccgcatcgagaagatgagcccggaggtggtggactccaacccctacag 374
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81403980 cccgcatcgagaagatgagcccggaggtggtggactccaacccctacag 81404028
Score = 305 bits (154), Expect = 2e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 2 acacaggaagcggaccccgtgcgaggccagcggggccggtggagacgtgtaagttagaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81403656 acacaggaagcggaccccgtgcgaggccagcggggccggtggagacgtgtaagttagaga 81403715
Query: 62 ggtgaagggagcccttttccggggttgtgggctagcaaggccgccgcaaggtacctccgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81403716 ggtgaagggagcccttttccggggttgtgggctagcaaggccgccgcaaggtacctccgc 81403775
Query: 122 acatacctcttgcccgcccagcagccaacagtgt 155
||||||||||||||||||||||||||||||||||
Sbjct: 81403776 acatacctcttgcccgcccagcagccaacagtgt 81403809
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 509 agttgctactctttgactatgacaaggtggaactggccaatatgaacagacttttcttcc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81528676 agttgctactctttgactatgacaaggtggaactggccaatatgaacagacttttcttcc 81528735
Query: 569 aacctcatcaagcaggattaagtaaagttcaagcagcagaacatactttgagg 621
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81528736 aacctcatcaagcaggattaagtaaagttcaagcagcagaacatactttgagg 81528788
Score = 184 bits (93), Expect = 6e-44
Identities = 102/105 (97%)
Strand = Plus / Plus
Query: 793 gcttgtaatgagcttggacaaacatggatggagtctggggtcagtgaaaatgcagtatca 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81531192 gcttgtaatgagcttggacaaacatggatggagtctggggtcagtgaaaatgcagtatca 81531251
Query: 853 gggcatatacagctcataattcctgggagatctgcttgttttgcg 897
|||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 81531252 gggcatatacagctcataattcctggagaatctgcttgttttgcg 81531296
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 419 agaaaatccgtacctttgctgtagcaatagtaggtgttggtggagttggcagtgtgactg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81411202 agaaaatccgtacctttgctgtagcaatagtaggtgttggtggagttggcagtgtgactg 81411261
Query: 479 ctgaaatgctgaccagatgtggcattggtaag 510
||||||||||||||||||||||||||||||||
Sbjct: 81411262 ctgaaatgctgaccagatgtggcattggtaag 81411293
Score = 176 bits (89), Expect = 1e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 619 aggaacattaatcctgatgttctttttgaagtgcacaactacaacataaccacagtagaa 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81529610 aggaacattaatcctgatgttctttttgaagtgcacaactacaacataaccacagtagaa 81529669
Query: 679 aactttgaacacttcatggatagaataag 707
|||||||||||||||||||||||||||||
Sbjct: 81529670 aactttgaacacttcatggatagaataag 81529698
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 706 agtaatggtggattagaagaaggaaaacctgttgacctcgttcttagttgtgtggacaat 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81530335 agtaatggtggattagaagaaggaaaacctgttgacctcgttcttagttgtgtggacaat 81530394
Query: 766 tttgaagctcgaatgacaataaatacag 793
||||||||||||||||||||||||||||
Sbjct: 81530395 tttgaagctcgaatgacaataaatacag 81530422
Score = 95.6 bits (48), Expect = 4e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 373 agccggctgatggcattgaaacgaatgggaattgtaagcgactatgag 420
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81411037 agccggctgatggcattgaaacgaatgggaattgtaagcgactatgag 81411084
Score = 60.0 bits (30), Expect = 2e-06
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 897 gtgtgctccaccacttgtagttgctgncaatattgat 933
|||||||||||||||||||||||||| |||||||||
Sbjct: 81531469 gtgtgctccaccacttgtagttgctgcaaatattgat 81531505
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,439,654
Number of extensions: 113
Number of successful extensions: 113
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 9
Length of query: 933
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 912
Effective length of database: 2,808,413,156
Effective search space: 2561272798272
Effective search space used: 2561272798272
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)