Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004928
(967 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694728.1| PREDICTED: ribonuclease inhibitor-like [Bos ... 129 4e-30
Alignment gi|XP_608730.5| PREDICTED: ribonuclease inhibitor-like [Bos tau... 129 4e-30
>ref|XP_002694728.1| PREDICTED: ribonuclease inhibitor-like [Bos taurus].
Length = 385
Score = 129 bits (324), Expect = 4e-30
Identities = 70/100 (70%), Positives = 77/100 (77%)
Frame = +2
Query: 179 SNNRIXXXXXXXXXXXXXVNRTLRILVVSRNPMRSEGCSALLKSVRANPLSAAELLDFSD 358
SNNRI VN+TLRILV SRNPMRSEGCS +LKSV+ANP S ELLDFSD
Sbjct: 283 SNNRISAAGALSLGLGLRVNQTLRILV-SRNPMRSEGCSGVLKSVQANPQSVLELLDFSD 341
Query: 359 IQVNREFDDLAGSLKLILPRLCIKTAAHRVEYRRELLPIF 478
IQVNREFDDLA S+K+ILP LCIK AA RVEY++ELL IF
Sbjct: 342 IQVNREFDDLASSVKVILPGLCIKMAARRVEYKKELLAIF 381
>ref|XP_608730.5| PREDICTED: ribonuclease inhibitor-like [Bos taurus].
Length = 385
Score = 129 bits (324), Expect = 4e-30
Identities = 70/100 (70%), Positives = 77/100 (77%)
Frame = +2
Query: 179 SNNRIXXXXXXXXXXXXXVNRTLRILVVSRNPMRSEGCSALLKSVRANPLSAAELLDFSD 358
SNNRI VN+TLRILV SRNPMRSEGCS +LKSV+ANP S ELLDFSD
Sbjct: 283 SNNRISAAGALSLGLGLRVNQTLRILV-SRNPMRSEGCSGVLKSVQANPQSVLELLDFSD 341
Query: 359 IQVNREFDDLAGSLKLILPRLCIKTAAHRVEYRRELLPIF 478
IQVNREFDDLA S+K+ILP LCIK AA RVEY++ELL IF
Sbjct: 342 IQVNREFDDLASSVKVILPGLCIKMAARRVEYKKELLAIF 381
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,128,405
Number of extensions: 1022614
Number of successful extensions: 2650
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004928
(967 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,889,751
Number of extensions: 950041
Number of successful extensions: 2809
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2808
Number of HSP's successfully gapped: 0
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004928
(967 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,470,926
Number of extensions: 938426
Number of successful extensions: 2830
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2829
Number of HSP's successfully gapped: 0
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004928
(967 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083329.2| hypothetical protein LOC74685 isoform 1 [Mus mu... 93 3e-19
>ref|NP_083329.2| hypothetical protein LOC74685 isoform 1 [Mus musculus].
Length = 391
Score = 93.2 bits (230), Expect = 3e-19
Identities = 50/88 (56%), Positives = 59/88 (67%)
Frame = +2
Query: 182 NNRIXXXXXXXXXXXXXVNRTLRILVVSRNPMRSEGCSALLKSVRANPLSAAELLDFSDI 361
NNRI VN+TLRIL++S+NP+RS+GC LLKSVR N SA ELLD SDI
Sbjct: 282 NNRISVSGALKLGLGLQVNQTLRILIISKNPIRSDGCVGLLKSVRNNKSSALELLDVSDI 341
Query: 362 QVNREFDDLAGSLKLILPRLCIKTAAHR 445
QV+RE +DLA S+ ILP LCIK R
Sbjct: 342 QVSRECEDLASSMSEILPGLCIKRYTSR 369
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,228,275
Number of extensions: 800962
Number of successful extensions: 2414
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2412
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004928
(967 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133049.2| PREDICTED: leucine-rich repeat-containing pr... 61 8e-10
>ref|XP_003133049.2| PREDICTED: leucine-rich repeat-containing protein LOC400891-like
[Sus scrofa].
Length = 325
Score = 61.2 bits (147), Expect = 8e-10
Identities = 30/46 (65%), Positives = 30/46 (65%)
Frame = +3
Query: 48 MRDPCXXXXXXXXXXXXXXXTGHPAEVLEAKCSDVDSDSDLETEAT 185
MRDPC TGHPAEVLEAKCSDVDSDSDLETE T
Sbjct: 1 MRDPCEGPGEKEELEEGAAATGHPAEVLEAKCSDVDSDSDLETEGT 46
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,422,040
Number of extensions: 792326
Number of successful extensions: 1761
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1750
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004928
(967 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1001 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1001 bits (505), Expect = 0.0
Identities = 512/513 (99%), Gaps = 1/513 (0%)
Strand = Plus / Minus
Query: 356 gatatccaggtgaacagagagtttgatgaccttgccggttcactgaagctgattcttcca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54052196 gatatccaggtgaacagagagtttgatgaccttgccggttcactgaagctgattcttcca 54052137
Query: 416 aggctttgcataaagacggctgcccacagagtggagtacagaagagaactgctgcccatc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54052136 aggctttgcataaagacggctgcccacagagtggagtacagaagagaactgctgcccatc 54052077
Query: 476 ttcagaccatctaaatgattgtggagtgtggtttcctcacctctcccatcagccacatca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54052076 ttcagaccatctaaatgattgtggagtgtggtttcctcacctctcccatcagccacatca 54052017
Query: 536 acttcctgatgctttttaacacttgagtctgcatggagtccccatggcaaccaggtggta 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54052016 acttcctgatgctttttaacacttgagtctgcatggagtccccatggcaaccaggtggta 54051957
Query: 596 agtcccacagaggcggccttcatggtgactcaaacatttgtactactcaggaccttcctt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54051956 agtcccacagaggcggccttcatggtgactcaaacatttgtactactcaggaccttcctt 54051897
Query: 656 tgctctcactcattcatgtaagagaaacttgtactatagactacacaatgagctgggcat 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54051896 tgctctcactcattcatgtaagagaaacttgtactatagactacacaatgagctgggcat 54051837
Query: 716 tgggccaagatgcccaagatctggcacatgattaaaatatcaggtgatgtgcaaccggca 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54051836 tgggccaagatgcccaagatctggcacatgattaaaatatcaggtgatgtgcaaccggca 54051777
Query: 776 ttcccaaacaccactatgaataatgcaaactgacacagccttttcagaaggcaatttatt 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54051776 ttcccaaacaccactatgaataatgcaaactgacacagccttttcagaaggcaatttatt 54051717
Query: 836 atcaagcactgagaactt-aaactgcctgccta 867
|||||||||||||||||| ||||||||||||||
Sbjct: 54051716 atcaagcactgagaacttaaaactgcctgccta 54051684
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 3 cacactcctgctctcagcggctgccgctgcagagtgggtgtaaccatgagggatccctgc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54071849 cacactcctgctctcagcggctgccgctgcagagtgggtgtaaccatgagggatccctgc 54071790
Query: 63 gagggtcctggggagaaggaagagctggaggaaggggcggcggccactgggcatcctgca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54071789 gagggtcctggggagaaggaagagctggaggaaggggcggcggccactgggcatcctgca 54071730
Query: 123 gaagtcctggaggccaagtgttcagacgtggattcggactctgacctggagacagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54071729 gaagtcctggaggccaagtgttcagacgtggattcggactctgacctggagacagaag 54071672
Score = 192 bits (97), Expect = 2e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 260 gtatccaggaatcccatgcgaagtgagggctgctctgctcttctgaagtctgtccgggcc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54063223 gtatccaggaatcccatgcgaagtgagggctgctctgctcttctgaagtctgtccgggcc 54063164
Query: 320 aacccattgtctgccgcagaactgctggatttctctg 356
|||||||||||||||||||||||||||||||||||||
Sbjct: 54063163 aacccattgtctgccgcagaactgctggatttctctg 54063127
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 179 agcaacaaccgcatttctgcattgggagctctgagcctgggccagggtctgcaggtcaac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54064750 agcaacaaccgcatttctgcattgggagctctgagcctgggccagggtctgcaggtcaac 54064691
Query: 239 cggacactgaggattcttgttgt 261
|||||||||||||||||||||||
Sbjct: 54064690 cggacactgaggattcttgttgt 54064668
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,116,810
Number of extensions: 183
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 4
Length of query: 967
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 946
Effective length of database: 2,808,413,156
Effective search space: 2656758845576
Effective search space used: 2656758845576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)