Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004931
(1016 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192669.1| transmembrane protein 103 [Bos taurus]. 423 e-118
Alignment gi|XP_002697102.1| PREDICTED: transmembrane protein 103 [Bos ta... 423 e-118
>ref|NP_001192669.1| transmembrane protein 103 [Bos taurus].
Length = 266
Score = 423 bits (1088), Expect = e-118
Identities = 204/259 (78%), Positives = 223/259 (86%)
Frame = +3
Query: 120 MFSELSNLLNTSPDKVEQGKLTLLCDVKTDGSFLVHHFLSFYLKAHCKVCFVALTQSFSH 299
MF EL+NLLNT+P+ EQGKLTLLCD KTDGSFLVHHFLSFYLKA+CKVCFVAL QSFSH
Sbjct: 1 MFPELNNLLNTTPEGAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALVQSFSH 60
Query: 300 YNIVGQKLGVSLTIARERGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYE 479
YN+VGQKLGVSLT ARERGQLV LEGLKSA+DIFFRPQEEPHPLQFLREA+AG+LQPLY
Sbjct: 61 YNMVGQKLGVSLTTARERGQLVVLEGLKSAVDIFFRPQEEPHPLQFLREANAGDLQPLYA 120
Query: 480 FVQDALKPVANGEAAWRCPXXXXXXXXXXXXXXXXXXXXXDFIHYCRATVCWEWKGNIVA 659
FV+DAL+PV GEAAWRCP DF+HYCRATVC EWKGN+VA
Sbjct: 121 FVRDALEPVDCGEAAWRCPVLLVDDLSVLLSLGVGPVAVLDFVHYCRATVCREWKGNVVA 180
Query: 660 LVHDSGDTEDEENDILLNGLSHQSHLILRAEGLATGFCKDVHGQLSVLWRRPLQPTSQRD 839
LVHDSGD EDEE+D+LLNGLSHQSHLILRAEGLATGFCKDVHGQL +LWRRPLQPT+ RD
Sbjct: 181 LVHDSGDAEDEESDVLLNGLSHQSHLILRAEGLATGFCKDVHGQLRILWRRPLQPTTPRD 240
Query: 840 QSLTYQYKIQDKNVSFFCQ 896
+SLTYQYKIQDK+VSFF +
Sbjct: 241 RSLTYQYKIQDKSVSFFAK 259
>ref|XP_002697102.1| PREDICTED: transmembrane protein 103 [Bos taurus].
Length = 266
Score = 423 bits (1088), Expect = e-118
Identities = 204/259 (78%), Positives = 223/259 (86%)
Frame = +3
Query: 120 MFSELSNLLNTSPDKVEQGKLTLLCDVKTDGSFLVHHFLSFYLKAHCKVCFVALTQSFSH 299
MF EL+NLLNT+P+ EQGKLTLLCD KTDGSFLVHHFLSFYLKA+CKVCFVAL QSFSH
Sbjct: 1 MFPELNNLLNTTPEGAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALVQSFSH 60
Query: 300 YNIVGQKLGVSLTIARERGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYE 479
YN+VGQKLGVSLT ARERGQLV LEGLKSA+DIFFRPQEEPHPLQFLREA+AG+LQPLY
Sbjct: 61 YNMVGQKLGVSLTTARERGQLVVLEGLKSAVDIFFRPQEEPHPLQFLREANAGDLQPLYA 120
Query: 480 FVQDALKPVANGEAAWRCPXXXXXXXXXXXXXXXXXXXXXDFIHYCRATVCWEWKGNIVA 659
FV+DAL+PV GEAAWRCP DF+HYCRATVC EWKGN+VA
Sbjct: 121 FVRDALEPVDCGEAAWRCPVLLVDDLSVLLSLGVGPVAVLDFVHYCRATVCREWKGNVVA 180
Query: 660 LVHDSGDTEDEENDILLNGLSHQSHLILRAEGLATGFCKDVHGQLSVLWRRPLQPTSQRD 839
LVHDSGD EDEE+D+LLNGLSHQSHLILRAEGLATGFCKDVHGQL +LWRRPLQPT+ RD
Sbjct: 181 LVHDSGDAEDEESDVLLNGLSHQSHLILRAEGLATGFCKDVHGQLRILWRRPLQPTTPRD 240
Query: 840 QSLTYQYKIQDKNVSFFCQ 896
+SLTYQYKIQDK+VSFF +
Sbjct: 241 RSLTYQYKIQDKSVSFFAK 259
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,652,395
Number of extensions: 1070511
Number of successful extensions: 3550
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3537
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004931
(1016 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851507.1| PREDICTED: hypothetical protein XP_846414 [Cani... 338 4e-93
>ref|XP_851507.1| PREDICTED: hypothetical protein XP_846414 [Canis familiaris].
Length = 292
Score = 338 bits (868), Expect = 4e-93
Identities = 164/208 (78%), Positives = 175/208 (84%)
Frame = +3
Query: 171 QGKLTLLCDVKTDGSFLVHHFLSFYLKAHCKVCFVALTQSFSHYNIVGQKLGVSLTIARE 350
+GKLTLLCD KTDGSFLVHHFLSFYLKA+CKVCFVAL QSFSHYNIVGQKLGVSLT ARE
Sbjct: 72 RGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYNIVGQKLGVSLTAARE 131
Query: 351 RGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYEFVQDALKPVANGEAAWR 530
GQLVFLEGLKS++D+FFR Q EPHPLQFLREA AGNLQPLYEFV++ALKP +G+AAWR
Sbjct: 132 CGQLVFLEGLKSSVDVFFRAQAEPHPLQFLREADAGNLQPLYEFVREALKPADDGQAAWR 191
Query: 531 CPXXXXXXXXXXXXXXXXXXXXXDFIHYCRATVCWEWKGNIVALVHDSGDTEDEENDILL 710
CP DFIHYCRA VCWE KGNIVALVHDSGD EDEENDILL
Sbjct: 192 CPVLLVDDLSVLLSLGMGAVAVLDFIHYCRAAVCWEQKGNIVALVHDSGDAEDEENDILL 251
Query: 711 NGLSHQSHLILRAEGLATGFCKDVHGQL 794
NGLSHQSHLILRAEGLATGFC+DVHGQ+
Sbjct: 252 NGLSHQSHLILRAEGLATGFCRDVHGQV 279
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,096,364
Number of extensions: 1091044
Number of successful extensions: 3518
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3509
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004931
(1016 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026873.2| transmembrane protein 103 [Homo sapiens]. 408 e-114
>ref|NP_001026873.2| transmembrane protein 103 [Homo sapiens].
Length = 266
Score = 408 bits (1048), Expect = e-114
Identities = 197/259 (76%), Positives = 218/259 (84%)
Frame = +3
Query: 120 MFSELSNLLNTSPDKVEQGKLTLLCDVKTDGSFLVHHFLSFYLKAHCKVCFVALTQSFSH 299
MF EL+NLLNT+PD+ EQGKLTLLCD KTDGSFLVHHFLSFYLKA+CKVCFVAL QSFSH
Sbjct: 1 MFVELNNLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSH 60
Query: 300 YNIVGQKLGVSLTIARERGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYE 479
Y+IVGQKLGVSLT+ARERGQLVFLEGLKSA+D+ F+ Q+EPHPLQFLREA+AGNL+PL+E
Sbjct: 61 YSIVGQKLGVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFE 120
Query: 480 FVQDALKPVANGEAAWRCPXXXXXXXXXXXXXXXXXXXXXDFIHYCRATVCWEWKGNIVA 659
FV++ALKPV +GEA W P DFIHYCRATVCWE KGN+V
Sbjct: 121 FVREALKPVDSGEARWTYPVLLVDDLSVLLSLGMGAVAVLDFIHYCRATVCWELKGNMVV 180
Query: 660 LVHDSGDTEDEENDILLNGLSHQSHLILRAEGLATGFCKDVHGQLSVLWRRPLQPTSQRD 839
LVHDSGD EDEENDILLNGLSHQSHLILRAEGLATGFC+DVHGQL +LWRRP QP RD
Sbjct: 181 LVHDSGDAEDEENDILLNGLSHQSHLILRAEGLATGFCRDVHGQLRILWRRPSQPAVHRD 240
Query: 840 QSLTYQYKIQDKNVSFFCQ 896
QS TYQYKIQDK+VSFF +
Sbjct: 241 QSFTYQYKIQDKSVSFFAK 259
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,544,525
Number of extensions: 1083093
Number of successful extensions: 3537
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3528
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004931
(1016 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074850.1| transmembrane protein 103 [Mus musculus]. 379 e-105
>ref|NP_001074850.1| transmembrane protein 103 [Mus musculus].
Length = 266
Score = 379 bits (972), Expect = e-105
Identities = 185/259 (71%), Positives = 206/259 (79%)
Frame = +3
Query: 120 MFSELSNLLNTSPDKVEQGKLTLLCDVKTDGSFLVHHFLSFYLKAHCKVCFVALTQSFSH 299
MF EL+NLL+T+PDK EQG LTLLCD KTDGSFLVHHFLSFYLKA+CKVCFVAL QSFSH
Sbjct: 1 MFPELNNLLSTTPDKTEQGTLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALVQSFSH 60
Query: 300 YNIVGQKLGVSLTIARERGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYE 479
YNIVGQKLGVSLT AR+RGQLVFLEGLKS++++ F Q+EPHPLQFLREA GNLQ LY
Sbjct: 61 YNIVGQKLGVSLTAARDRGQLVFLEGLKSSVEVLFHSQDEPHPLQFLREAGTGNLQSLYT 120
Query: 480 FVQDALKPVANGEAAWRCPXXXXXXXXXXXXXXXXXXXXXDFIHYCRATVCWEWKGNIVA 659
F+QD LKP + E+ W+ P DF+ YCRATVC E KGN+VA
Sbjct: 121 FIQDTLKPADSEESPWKYPVLLVDNLSVLLSLGVGAVAVLDFMQYCRATVCCELKGNVVA 180
Query: 660 LVHDSGDTEDEENDILLNGLSHQSHLILRAEGLATGFCKDVHGQLSVLWRRPLQPTSQRD 839
LVHD+ DE ND LLNGLSHQSHLILRAEGLATGFCKDVHGQLS+LWRRP + T+QR
Sbjct: 181 LVHDTEGATDEGNDTLLNGLSHQSHLILRAEGLATGFCKDVHGQLSILWRRPSRSTAQRA 240
Query: 840 QSLTYQYKIQDKNVSFFCQ 896
QSLTYQYKIQDKNVSFF +
Sbjct: 241 QSLTYQYKIQDKNVSFFAK 259
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,702,119
Number of extensions: 917216
Number of successful extensions: 3069
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3066
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004931
(1016 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358467.1| PREDICTED: UPF0405 protein C3orf75 homolog [... 481 e-136
Alignment gi|XP_003358470.1| PREDICTED: UPF0405 protein C3orf75 homolog [... 343 1e-94
>ref|XP_003358467.1| PREDICTED: UPF0405 protein C3orf75 homolog [Sus scrofa].
Length = 266
Score = 481 bits (1237), Expect = e-136
Identities = 236/259 (91%), Positives = 237/259 (91%)
Frame = +3
Query: 120 MFSELSNLLNTSPDKVEQGKLTLLCDVKTDGSFLVHHFLSFYLKAHCKVCFVALTQSFSH 299
MFSELSNLLNTSPDKVEQGKLTLLCDVKTDGSFLVHHFLSFYLKAHCKVCFVALTQSFSH
Sbjct: 1 MFSELSNLLNTSPDKVEQGKLTLLCDVKTDGSFLVHHFLSFYLKAHCKVCFVALTQSFSH 60
Query: 300 YNIVGQKLGVSLTIARERGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYE 479
YNIVGQKLGVSLTIARERGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYE
Sbjct: 61 YNIVGQKLGVSLTIARERGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYE 120
Query: 480 FVQDALKPVANGEAAWRCPXXXXXXXXXXXXXXXXXXXXXDFIHYCRATVCWEWKGNIVA 659
FVQDALKPVANGEAAWRCP DFIHYCRATVCWEWKGNIVA
Sbjct: 121 FVQDALKPVANGEAAWRCPVLLVDDLSVLLSLGVGAVAVLDFIHYCRATVCWEWKGNIVA 180
Query: 660 LVHDSGDTEDEENDILLNGLSHQSHLILRAEGLATGFCKDVHGQLSVLWRRPLQPTSQRD 839
LVHDSGDTEDEENDILLNGLSHQSHLILRAEGLATGFCKDVHGQLSVLWRRPLQPTSQRD
Sbjct: 181 LVHDSGDTEDEENDILLNGLSHQSHLILRAEGLATGFCKDVHGQLSVLWRRPLQPTSQRD 240
Query: 840 QSLTYQYKIQDKNVSFFCQ 896
QSLTYQYKIQDKNVSFF +
Sbjct: 241 QSLTYQYKIQDKNVSFFAK 259
>ref|XP_003358470.1| PREDICTED: UPF0405 protein C3orf75 homolog [Sus scrofa].
Length = 202
Score = 343 bits (879), Expect = 1e-94
Identities = 168/191 (87%), Positives = 169/191 (88%)
Frame = +3
Query: 324 GVSLTIARERGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYEFVQDALKP 503
GVSLTIARERGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYEFVQDALKP
Sbjct: 5 GVSLTIARERGQLVFLEGLKSAMDIFFRPQEEPHPLQFLREASAGNLQPLYEFVQDALKP 64
Query: 504 VANGEAAWRCPXXXXXXXXXXXXXXXXXXXXXDFIHYCRATVCWEWKGNIVALVHDSGDT 683
VANGEAAWRCP DFIHYCRATVCWEWKGNIVALVHDSGDT
Sbjct: 65 VANGEAAWRCPVLLVDDLSVLLSLGVGAVAVLDFIHYCRATVCWEWKGNIVALVHDSGDT 124
Query: 684 EDEENDILLNGLSHQSHLILRAEGLATGFCKDVHGQLSVLWRRPLQPTSQRDQSLTYQYK 863
EDEENDILLNGLSHQSHLILRAEGLATGFCKDVHGQLSVLWRRPLQPTSQRDQSLTYQYK
Sbjct: 125 EDEENDILLNGLSHQSHLILRAEGLATGFCKDVHGQLSVLWRRPLQPTSQRDQSLTYQYK 184
Query: 864 IQDKNVSFFCQ 896
IQDKNVSFF +
Sbjct: 185 IQDKNVSFFAK 195
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,879,725
Number of extensions: 685929
Number of successful extensions: 2218
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2214
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004931
(1016 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 408 e-111
>Sscrofa_Chr13
|| Length = 218635234
Score = 408 bits (206), Expect = e-111
Identities = 206/206 (100%)
Strand = Plus / Minus
Query: 440 cagggaggccagtgctgggaacctgcagccgctgtatgagtttgtgcaggatgccctgaa 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33563304 cagggaggccagtgctgggaacctgcagccgctgtatgagtttgtgcaggatgccctgaa 33563245
Query: 500 gcccgtggccaatggggaggcggcatggaggtgccccgtgctgctggtggacgacctcag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33563244 gcccgtggccaatggggaggcggcatggaggtgccccgtgctgctggtggacgacctcag 33563185
Query: 560 tgtgctgctgagcctgggtgtcggggcagtggcggtgctggacttcatccactactgcag 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33563184 tgtgctgctgagcctgggtgtcggggcagtggcggtgctggacttcatccactactgcag 33563125
Query: 620 agccactgtgtgctgggaatggaagg 645
||||||||||||||||||||||||||
Sbjct: 33563124 agccactgtgtgctgggaatggaagg 33563099
Score = 375 bits (189), Expect = e-101
Identities = 217/227 (95%), Gaps = 1/227 (0%)
Strand = Plus / Minus
Query: 790 agctgagtgtcctgtggaggaggcccctgcagcccacatcccagcgggatcagagcctca 849
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 33561094 agctgagtgtcctgtggaggagacccctgcagcccacatcccagcgggatcagagcctca 33561035
Query: 850 cttaccagtacaagatacaggacaagaacgtgtccnnnnnnngccaaaggaatgtctcct 909
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 33561034 cttaccagtacaagatacaggacaagaacgtgtcctttttt-gccaaaggaatgtctcct 33560976
Query: 910 gctgtcctgtgacctgatttaggggcagctgaagttactttgggttgtttttggatgcaa 969
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 33560975 gctgtcctgtgacctgatttaggggcagctgaagttaccttgggttgtttttggatgcaa 33560916
Query: 970 agataaagcaactgagcagaaatggatctttacacttttgcagtgga 1016
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 33560915 agataaagcaactgagcagaaatggatctttacacctttgcagtgga 33560869
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 1 gctttgcgcatgcgcgctcctgccgcacgggcctgagtggtgggtgtcgctctccagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33572129 gctttgcgcatgcgcgctcctgccgcacgggcctgagtggtgggtgtcgctctccagctt 33572070
Query: 61 cagccgtctctgccgcagccccatctcttcgtccagggcgctccttcgcagagctgagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33572069 cagccgtctctgccgcagccccatctcttcgtccagggcgctccttcgcagagctgagaa 33572010
Query: 121 tgttctcggaactcagtaaccttctcaacaccagtcctgacaaggtggagcagg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33572009 tgttctcggaactcagtaaccttctcaacaccagtcctgacaaggtggagcagg 33571956
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 643 agggaaacatagtggcccttgtgcatgacagtggagacactgaggacgaggagaatgaca 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33562428 agggaaacatagtggcccttgtgcatgacagtggagacactgaggacgaggagaatgaca 33562369
Query: 703 tcctgctgaatggccttagtcaccagagccacctgatccttcgggctgagggtctggcca 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33562368 tcctgctgaatggccttagtcaccagagccacctgatccttcgggctgagggtctggcca 33562309
Query: 763 ccggcttctgcaaggatgtgcatgggcag 791
|||||||||||||||||||||||||||||
Sbjct: 33562308 ccggcttctgcaaggatgtgcatgggcag 33562280
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 323 gggggtcagtctgaccatagcacgggaacgcgggcagcttgtgtttcttgagggcctcaa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33564804 gggggtcagtctgaccatagcacgggaacgcgggcagcttgtgtttcttgagggcctcaa 33564745
Query: 383 gtctgccatggacatcttcttccggcctcaggaggagccacacccgctgcagttcctcag 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33564744 gtctgccatggacatcttcttccggcctcaggaggagccacacccgctgcagttcctcag 33564685
Query: 443 g 443
|
Sbjct: 33564684 g 33564684
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 172 aggggaaactgactctactctgtgatgtcaagactgatggcagtttccttgtgcatcact 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33569860 aggggaaactgactctactctgtgatgtcaagactgatggcagtttccttgtgcatcact 33569801
Query: 232 ttctctccttctacctcaaag 252
|||||||||||||||||||||
Sbjct: 33569800 ttctctccttctacctcaaag 33569780
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 251 agctcattgtaaagtctgctttgtggcactcactcagtccttcagtcactacaatatcgt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33567386 agctcattgtaaagtctgctttgtggcactcactcagtccttcagtcactacaatatcgt 33567327
Query: 311 gggacagaagctgg 324
||||||||||||||
Sbjct: 33567326 gggacagaagctgg 33567313
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,100,177
Number of extensions: 157
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 8
Length of query: 1016
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 995
Effective length of database: 2,808,413,156
Effective search space: 2794371090220
Effective search space used: 2794371090220
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)