Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004943
(1068 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002700504.1| PREDICTED: apical protein of Xenopus-like [B... 288 4e-78
Alignment gi|XP_873331.2| PREDICTED: apical protein of Xenopus-like [Bos ... 288 4e-78
Alignment gi|XP_002700503.1| PREDICTED: shroom family member 2 [Bos tauru... 282 4e-76
Alignment gi|XP_001256796.2| PREDICTED: shroom family member 2, partial [... 276 2e-74
Alignment gi|NP_001178453.1| protein Shroom3 [Bos taurus]. 216 2e-56
Alignment gi|XP_002688405.1| PREDICTED: shroom family member 3 [Bos tauru... 216 2e-56
Alignment gi|XP_002700130.1| PREDICTED: shroom family member 4 [Bos tauru... 200 2e-51
Alignment gi|XP_002707344.1| PREDICTED: shroom family member 4 [Bos tauru... 200 2e-51
Alignment gi|NP_001095764.1| protein Shroom1 [Bos taurus]. 104 1e-22
>ref|XP_002700504.1| PREDICTED: apical protein of Xenopus-like [Bos taurus].
Length = 215
Score = 288 bits (738), Expect = 4e-78
Identities = 146/158 (92%), Positives = 150/158 (94%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LED+QANSALGDEVEAL K VCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN
Sbjct: 58 LEDVQANSALGDEVEALVKAVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 117
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
LDDS P DRQSLLEKQRVL+QQHEDA+ELKENLDRREGIVFDIL SYL ESLADYEHF
Sbjct: 118 LDDSTPPGDRQSLLEKQRVLIQQHEDARELKENLDRREGIVFDILVSYLGPESLADYEHF 177
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK 474
VKMKSALIIEQREL+DKIHLGEEQLKCLLDSLQPERGK
Sbjct: 178 VKMKSALIIEQRELEDKIHLGEEQLKCLLDSLQPERGK 215
>ref|XP_873331.2| PREDICTED: apical protein of Xenopus-like [Bos taurus].
Length = 215
Score = 288 bits (738), Expect = 4e-78
Identities = 146/158 (92%), Positives = 150/158 (94%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LED+QANSALGDEVEAL K VCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN
Sbjct: 58 LEDVQANSALGDEVEALVKAVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 117
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
LDDS P DRQSLLEKQRVL+QQHEDA+ELKENLDRREGIVFDIL SYL ESLADYEHF
Sbjct: 118 LDDSTPPGDRQSLLEKQRVLIQQHEDARELKENLDRREGIVFDILVSYLGPESLADYEHF 177
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK 474
VKMKSALIIEQREL+DKIHLGEEQLKCLLDSLQPERGK
Sbjct: 178 VKMKSALIIEQRELEDKIHLGEEQLKCLLDSLQPERGK 215
>ref|XP_002700503.1| PREDICTED: shroom family member 2 [Bos taurus].
Length = 215
Score = 282 bits (721), Expect = 4e-76
Identities = 142/158 (89%), Positives = 150/158 (94%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LED+QANSALGDEV+AL K +CKPNEFDKFRMFIGDLDKVVNLLLSL+GRLARVENALNN
Sbjct: 58 LEDMQANSALGDEVQALVKAMCKPNEFDKFRMFIGDLDKVVNLLLSLAGRLARVENALNN 117
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
LDDS P D QSLLEKQRVL+QQHEDA+ELKENLDRREGIVFDILASYL ESLADYEHF
Sbjct: 118 LDDSTPPGDLQSLLEKQRVLIQQHEDARELKENLDRREGIVFDILASYLGPESLADYEHF 177
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK 474
V+MKSALIIEQREL+DKIHLGEEQLKCLLDSLQPERGK
Sbjct: 178 VRMKSALIIEQRELEDKIHLGEEQLKCLLDSLQPERGK 215
>ref|XP_001256796.2| PREDICTED: shroom family member 2, partial [Bos taurus].
Length = 436
Score = 276 bits (707), Expect = 2e-74
Identities = 140/158 (88%), Positives = 148/158 (93%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LED+QANSALGDEV+AL K +CKPNEFDKFRMFIGDLDKVVNLLLSL+GRLARVENALNN
Sbjct: 279 LEDMQANSALGDEVQALVKAMCKPNEFDKFRMFIGDLDKVVNLLLSLAGRLARVENALNN 338
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
LDDS P D QSLLEKQRVL+QQHEDA+ELKENLDRREGI DILASYL ESLADYEHF
Sbjct: 339 LDDSTPPGDLQSLLEKQRVLIQQHEDARELKENLDRREGIDVDILASYLGPESLADYEHF 398
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK 474
V+MKSALIIEQREL+DKIHLGEEQLKCLLDSLQPERGK
Sbjct: 399 VRMKSALIIEQRELEDKIHLGEEQLKCLLDSLQPERGK 436
>ref|NP_001178453.1| protein Shroom3 [Bos taurus].
Length = 1988
Score = 216 bits (551), Expect = 2e-56
Identities = 108/152 (71%), Positives = 129/152 (84%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
L DI+ N+ALG+EVEA ++CKPNE DK++MFIGDLDKVVNLLLSLSGRLARVEN L+
Sbjct: 1797 LMDIKLNNALGEEVEAWISELCKPNEIDKYKMFIGDLDKVVNLLLSLSGRLARVENVLSG 1856
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
L + AS +R SL EK++VL QHEDA+ELKEN+DRRE +V DILA+YLS+E L DY HF
Sbjct: 1857 LGEDASNEERSSLNEKRKVLSAQHEDARELKENVDRRERVVLDILANYLSEEQLQDYRHF 1916
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKS L+IEQRELDDKI LG+EQ+KCLL+SL
Sbjct: 1917 VKMKSTLLIEQRELDDKIKLGQEQVKCLLESL 1948
>ref|XP_002688405.1| PREDICTED: shroom family member 3 [Bos taurus].
Length = 1988
Score = 216 bits (551), Expect = 2e-56
Identities = 108/152 (71%), Positives = 129/152 (84%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
L DI+ N+ALG+EVEA ++CKPNE DK++MFIGDLDKVVNLLLSLSGRLARVEN L+
Sbjct: 1797 LMDIKLNNALGEEVEAWISELCKPNEIDKYKMFIGDLDKVVNLLLSLSGRLARVENVLSG 1856
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
L + AS +R SL EK++VL QHEDA+ELKEN+DRRE +V DILA+YLS+E L DY HF
Sbjct: 1857 LGEDASNEERSSLNEKRKVLSAQHEDARELKENVDRRERVVLDILANYLSEEQLQDYRHF 1916
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKS L+IEQRELDDKI LG+EQ+KCLL+SL
Sbjct: 1917 VKMKSTLLIEQRELDDKIKLGQEQVKCLLESL 1948
>ref|XP_002700130.1| PREDICTED: shroom family member 4 [Bos taurus].
Length = 1495
Score = 200 bits (509), Expect = 2e-51
Identities = 104/152 (68%), Positives = 128/152 (84%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LEDI ANSALG+EVEA K +CK NEF+K+R+FIGDLDKVVNLLLSLSGRLARVENALN+
Sbjct: 1338 LEDITANSALGEEVEANLKALCKSNEFEKYRLFIGDLDKVVNLLLSLSGRLARVENALNS 1397
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
+D A+ ++ L+EK++ L Q DAKELKE++DRRE +VF +++ YL Q+ L DY+HF
Sbjct: 1398 IDSEAN-QEKLVLIEKKQQLTGQLADAKELKEHVDRREKLVFGMVSRYLPQDQLQDYQHF 1456
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKSALIIEQREL++KI LGEEQLKCL +SL
Sbjct: 1457 VKMKSALIIEQRELEEKIKLGEEQLKCLRESL 1488
>ref|XP_002707344.1| PREDICTED: shroom family member 4 [Bos taurus].
Length = 1495
Score = 200 bits (509), Expect = 2e-51
Identities = 104/152 (68%), Positives = 128/152 (84%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LEDI ANSALG+EVEA K +CK NEF+K+R+FIGDLDKVVNLLLSLSGRLARVENALN+
Sbjct: 1338 LEDITANSALGEEVEANLKALCKSNEFEKYRLFIGDLDKVVNLLLSLSGRLARVENALNS 1397
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
+D A+ ++ L+EK++ L Q DAKELKE++DRRE +VF +++ YL Q+ L DY+HF
Sbjct: 1398 IDSEAN-QEKLVLIEKKQQLTGQLADAKELKEHVDRREKLVFGMVSRYLPQDQLQDYQHF 1456
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKSALIIEQREL++KI LGEEQLKCL +SL
Sbjct: 1457 VKMKSALIIEQRELEEKIKLGEEQLKCLRESL 1488
>ref|NP_001095764.1| protein Shroom1 [Bos taurus].
Length = 843
Score = 104 bits (260), Expect = 1e-22
Identities = 60/174 (34%), Positives = 98/174 (56%)
Frame = +1
Query: 13 QANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLDDS 192
QA + G +EA C P+E ++F F+ DL++V+ LLL L RLARV AL +
Sbjct: 668 QAWARRGAALEAAVGQACAPHELERFSRFMADLERVLGLLLLLGSRLARVHRALARVGAD 727
Query: 193 ASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHFVKMK 372
+ P ++ SLL++ +L +Q +DAKELK+++ RRE + ++LA L E L+ Y + K
Sbjct: 728 SDPEEQASLLQRLGLLQRQEKDAKELKQHVARRERALRELLARALPAEELSAYRTLLAGK 787
Query: 373 SALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK*GEPLVEGGGWKPGRPARVP 534
+A++ +QR LD+++ L ++QL + + L P G P +P P
Sbjct: 788 AAVLAQQRSLDERVRLIQDQLDAVRNDLGRHPSS-PRPAFPSGTHPPDKPPFPP 840
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,720,862
Number of extensions: 1433487
Number of successful extensions: 11144
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 10970
Number of HSP's successfully gapped: 9
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004943
(1068 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548854.2| PREDICTED: similar to Apical-like protein (APXL... 294 1e-79
Alignment gi|XP_850003.1| PREDICTED: similar to shroom [Canis familiaris]. 222 5e-58
Alignment gi|XP_855411.1| PREDICTED: similar to shroom [Canis familiaris]. 202 6e-52
Alignment gi|XP_538623.2| PREDICTED: similar to apical protein 2 [Canis f... 101 1e-21
>ref|XP_548854.2| PREDICTED: similar to Apical-like protein (APXL protein) [Canis
familiaris].
Length = 1630
Score = 294 bits (752), Expect = 1e-79
Identities = 149/158 (94%), Positives = 154/158 (97%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LEDIQANSALGDEVEA+AKDVCKPNEFDKFRMFIGDL+KVVNLLLSLSGRLARVENALNN
Sbjct: 1473 LEDIQANSALGDEVEAIAKDVCKPNEFDKFRMFIGDLEKVVNLLLSLSGRLARVENALNN 1532
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
LDDS SP DRQSLLEKQRVL+QQHEDAKELKENLDRRE IVFDILASYLS+ESLADYEHF
Sbjct: 1533 LDDSTSPGDRQSLLEKQRVLIQQHEDAKELKENLDRRERIVFDILASYLSEESLADYEHF 1592
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK 474
VKMKSALIIEQREL+DKIHLGEEQLKCL DSLQPERGK
Sbjct: 1593 VKMKSALIIEQRELEDKIHLGEEQLKCLFDSLQPERGK 1630
>ref|XP_850003.1| PREDICTED: similar to shroom [Canis familiaris].
Length = 2151
Score = 222 bits (565), Expect = 5e-58
Identities = 110/152 (72%), Positives = 132/152 (86%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
L DI+ N+ALG+EVEAL ++CKPNEFDK++MFIGDLDKVVNLLLSLSGRLARVEN L+
Sbjct: 1960 LMDIKLNNALGEEVEALISELCKPNEFDKYKMFIGDLDKVVNLLLSLSGRLARVENVLSG 2019
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
L + AS +R SL EK++VL QHEDA+ELKENLDRRE +V DILA+YLS+E L DY+HF
Sbjct: 2020 LGEDASNEERSSLNEKKKVLAGQHEDARELKENLDRRERVVLDILANYLSEEQLQDYQHF 2079
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKS L+IEQR+LDDKI LG+EQ+KCLL+SL
Sbjct: 2080 VKMKSTLLIEQRKLDDKIKLGQEQVKCLLESL 2111
>ref|XP_855411.1| PREDICTED: similar to shroom [Canis familiaris].
Length = 1714
Score = 202 bits (513), Expect = 6e-52
Identities = 104/152 (68%), Positives = 129/152 (84%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LEDI ANSALG+EVEA K +CK NEF+K+R+FIGDLDKVVNLLLSLSGRLARVENALN+
Sbjct: 1557 LEDISANSALGEEVEANLKAICKSNEFEKYRLFIGDLDKVVNLLLSLSGRLARVENALNS 1616
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
+D A+ ++ L+EK++ L Q +DAKELKE++DRRE +VF +++ YL Q+ L DY+HF
Sbjct: 1617 IDAEAN-QEKLVLIEKKQQLTGQLQDAKELKEHVDRREKLVFGMVSRYLPQDQLQDYQHF 1675
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKSALIIEQREL++KI LGEEQLKCL +SL
Sbjct: 1676 VKMKSALIIEQRELEEKIKLGEEQLKCLRESL 1707
>ref|XP_538623.2| PREDICTED: similar to apical protein 2 [Canis familiaris].
Length = 653
Score = 101 bits (251), Expect = 1e-21
Identities = 57/171 (33%), Positives = 92/171 (53%)
Frame = +1
Query: 13 QANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLDDS 192
QA + G +EA C P + ++F F+ D+++V+ LLL L RL RV AL
Sbjct: 460 QAWARRGAALEAAVGQACAPRDLERFSRFMADIERVLGLLLLLGSRLGRVRRALARAGAD 519
Query: 193 ASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHFVKMK 372
+ P ++ SLL++ +L +Q EDAKELKE++ RRE + ++L L E L+ Y + K
Sbjct: 520 SDPDEQASLLQRLGLLQRQQEDAKELKEHVARRERALREVLVQALPPEELSAYHSLLVGK 579
Query: 373 SALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK*GEPLVEGGGWKPGRPA 525
+A++ +QR LD+++ L ++QL ++ WKP R A
Sbjct: 580 AAVLAQQRSLDERVRLLQDQLDATVN------------------WKPNREA 612
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,601,216
Number of extensions: 1476667
Number of successful extensions: 11462
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11340
Number of HSP's successfully gapped: 4
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004943
(1068 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001640.1| protein Shroom2 [Homo sapiens]. 283 1e-76
Alignment gi|NP_065910.3| protein Shroom3 [Homo sapiens]. 221 9e-58
Alignment gi|NP_065768.2| protein Shroom4 [Homo sapiens]. 199 3e-51
Alignment gi|NP_001166171.1| protein Shroom1 isoform 1 [Homo sapiens]. 107 1e-23
Alignment gi|NP_597713.2| protein Shroom1 isoform 2 [Homo sapiens]. 97 3e-20
>ref|NP_001640.1| protein Shroom2 [Homo sapiens].
Length = 1616
Score = 283 bits (725), Expect = 1e-76
Identities = 143/158 (90%), Positives = 151/158 (95%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LED+QAN+ LG EVEA+ K VCKP+EFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN
Sbjct: 1459 LEDVQANTVLGAEVEAIVKGVCKPSEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 1518
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
LDD ASP DRQSLLEKQRVL+QQHEDAKELKENLDRRE IVFDILA+YLS+ESLADYEHF
Sbjct: 1519 LDDGASPGDRQSLLEKQRVLIQQHEDAKELKENLDRRERIVFDILANYLSEESLADYEHF 1578
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK 474
VKMKSALIIEQREL+DKIHLGEEQLKCLLDSLQPERGK
Sbjct: 1579 VKMKSALIIEQRELEDKIHLGEEQLKCLLDSLQPERGK 1616
>ref|NP_065910.3| protein Shroom3 [Homo sapiens].
Length = 1996
Score = 221 bits (563), Expect = 9e-58
Identities = 109/152 (71%), Positives = 131/152 (86%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
L DI+ N+ALG+EVEAL ++CKPNEFDK+RMFIGDLDKVVNLLLSLSGRLARVEN L+
Sbjct: 1805 LTDIKLNNALGEEVEALISELCKPNEFDKYRMFIGDLDKVVNLLLSLSGRLARVENVLSG 1864
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
L + AS +R SL EK+++L QHEDA+ELKENLDRRE +V ILA+YLS+E L DY+HF
Sbjct: 1865 LGEDASNEERSSLYEKRKILAGQHEDARELKENLDRRERVVLGILANYLSEEQLQDYQHF 1924
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKS L+IEQR+LDDKI LG+EQ+KCLL+SL
Sbjct: 1925 VKMKSTLLIEQRKLDDKIKLGQEQVKCLLESL 1956
>ref|NP_065768.2| protein Shroom4 [Homo sapiens].
Length = 1493
Score = 199 bits (507), Expect = 3e-51
Identities = 103/152 (67%), Positives = 127/152 (83%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LEDI ANSALG+EVEA K VCK NEF+K+ +F+GDLDKVVNLLLSLSGRLARVENALN+
Sbjct: 1336 LEDINANSALGEEVEANLKAVCKSNEFEKYHLFVGDLDKVVNLLLSLSGRLARVENALNS 1395
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
+D A+ ++ L+EK++ L Q DAKELKE++DRRE +VF +++ YL Q+ L DY+HF
Sbjct: 1396 IDSEAN-QEKLVLIEKKQQLTGQLADAKELKEHVDRREKLVFGMVSRYLPQDQLQDYQHF 1454
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKSALIIEQREL++KI LGEEQLKCL +SL
Sbjct: 1455 VKMKSALIIEQRELEEKIKLGEEQLKCLRESL 1486
>ref|NP_001166171.1| protein Shroom1 isoform 1 [Homo sapiens].
Length = 852
Score = 107 bits (268), Expect = 1e-23
Identities = 57/139 (41%), Positives = 86/139 (61%)
Frame = +1
Query: 40 VEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLDDSASPSDRQSL 219
+EA + C P E ++F F+ DL++V+ LLL L RLARV AL + P ++ SL
Sbjct: 686 LEAAVRQACAPQELERFSRFMADLERVLGLLLLLGSRLARVRRALARAASDSDPDEQASL 745
Query: 220 LEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHFVKMKSALIIEQRE 399
L++ R+L +Q EDAKELKE++ RRE V ++L L E L Y + K+A++ +QR
Sbjct: 746 LQRLRLLQRQEEDAKELKEHVARRERAVREVLVRALPVEELRVYCALLAGKAAVLAQQRN 805
Query: 400 LDDKIHLGEEQLKCLLDSL 456
LD++I L ++QL + D L
Sbjct: 806 LDERIRLLQDQLDAIRDDL 824
>ref|NP_597713.2| protein Shroom1 isoform 2 [Homo sapiens].
Length = 847
Score = 97.1 bits (240), Expect = 3e-20
Identities = 54/139 (38%), Positives = 82/139 (58%)
Frame = +1
Query: 40 VEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLDDSASPSDRQSL 219
+EA + C P E ++F F+ DL++V+ LLL L RLARV AL + P +
Sbjct: 686 LEAAVRQACAPQELERFSRFMADLERVLGLLLLLGSRLARVRRALARAASDSDPDE---- 741
Query: 220 LEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHFVKMKSALIIEQRE 399
++ R+L +Q EDAKELKE++ RRE V ++L L E L Y + K+A++ +QR
Sbjct: 742 -QRLRLLQRQEEDAKELKEHVARRERAVREVLVRALPVEELRVYCALLAGKAAVLAQQRN 800
Query: 400 LDDKIHLGEEQLKCLLDSL 456
LD++I L ++QL + D L
Sbjct: 801 LDERIRLLQDQLDAIRDDL 819
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,486,746
Number of extensions: 1427199
Number of successful extensions: 10375
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10254
Number of HSP's successfully gapped: 5
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004943
(1068 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766029.2| protein Shroom2 [Mus musculus]. 285 3e-77
Alignment gi|NP_001071064.1| protein Shroom3 isoform 2 [Mus musculus]. 221 6e-58
Alignment gi|NP_001071063.1| protein Shroom3 isoform 2 [Mus musculus]. 221 6e-58
Alignment gi|NP_056571.2| protein Shroom3 isoform 1 [Mus musculus]. 221 6e-58
Alignment gi|NP_001035549.1| protein Shroom4 [Mus musculus]. 196 3e-50
Alignment gi|NP_082193.2| protein Shroom1 [Mus musculus]. 100 3e-21
>ref|NP_766029.2| protein Shroom2 [Mus musculus].
Length = 1487
Score = 285 bits (730), Expect = 3e-77
Identities = 144/158 (91%), Positives = 151/158 (95%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LEDIQAN+ALGDEVEA+ KDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN
Sbjct: 1330 LEDIQANNALGDEVEAIVKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 1389
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
LDD+ SP DRQSLLEKQRVL QQHEDAKELKENLDRRE IVFDILA+YLS+E+LADYEHF
Sbjct: 1390 LDDNPSPGDRQSLLEKQRVLTQQHEDAKELKENLDRRERIVFDILATYLSEENLADYEHF 1449
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK 474
VKMKSALIIEQREL+DKIHLGEEQLKCL DSLQPER K
Sbjct: 1450 VKMKSALIIEQRELEDKIHLGEEQLKCLFDSLQPERSK 1487
>ref|NP_001071064.1| protein Shroom3 isoform 2 [Mus musculus].
Length = 1805
Score = 221 bits (564), Expect = 6e-58
Identities = 115/176 (65%), Positives = 138/176 (78%), Gaps = 4/176 (2%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
L DI+ N+ALG+EVEAL ++CKPNEFDK++MFIGDLDKVVNLLLSLSGRLARVEN L
Sbjct: 1614 LTDIKLNNALGEEVEALISELCKPNEFDKYKMFIGDLDKVVNLLLSLSGRLARVENVLRG 1673
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
L + AS +R SL EK++VL QHEDA+ELKENLDRRE +V DILA+YLS E L DY+HF
Sbjct: 1674 LGEDASKEERSSLNEKRKVLAGQHEDARELKENLDRRERVVLDILANYLSAEQLQDYQHF 1733
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL----QPERGK*GEPLVEGGGWKPG 516
VKMKS L+IEQR+LDDKI LG+EQ++CLL+SL +P+ G P G PG
Sbjct: 1734 VKMKSTLLIEQRKLDDKIKLGQEQVRCLLESLPSDFRPKAGAISLPPALTGHGTPG 1789
>ref|NP_001071063.1| protein Shroom3 isoform 2 [Mus musculus].
Length = 1805
Score = 221 bits (564), Expect = 6e-58
Identities = 115/176 (65%), Positives = 138/176 (78%), Gaps = 4/176 (2%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
L DI+ N+ALG+EVEAL ++CKPNEFDK++MFIGDLDKVVNLLLSLSGRLARVEN L
Sbjct: 1614 LTDIKLNNALGEEVEALISELCKPNEFDKYKMFIGDLDKVVNLLLSLSGRLARVENVLRG 1673
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
L + AS +R SL EK++VL QHEDA+ELKENLDRRE +V DILA+YLS E L DY+HF
Sbjct: 1674 LGEDASKEERSSLNEKRKVLAGQHEDARELKENLDRRERVVLDILANYLSAEQLQDYQHF 1733
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL----QPERGK*GEPLVEGGGWKPG 516
VKMKS L+IEQR+LDDKI LG+EQ++CLL+SL +P+ G P G PG
Sbjct: 1734 VKMKSTLLIEQRKLDDKIKLGQEQVRCLLESLPSDFRPKAGAISLPPALTGHGTPG 1789
>ref|NP_056571.2| protein Shroom3 isoform 1 [Mus musculus].
Length = 1980
Score = 221 bits (564), Expect = 6e-58
Identities = 115/176 (65%), Positives = 138/176 (78%), Gaps = 4/176 (2%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
L DI+ N+ALG+EVEAL ++CKPNEFDK++MFIGDLDKVVNLLLSLSGRLARVEN L
Sbjct: 1789 LTDIKLNNALGEEVEALISELCKPNEFDKYKMFIGDLDKVVNLLLSLSGRLARVENVLRG 1848
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
L + AS +R SL EK++VL QHEDA+ELKENLDRRE +V DILA+YLS E L DY+HF
Sbjct: 1849 LGEDASKEERSSLNEKRKVLAGQHEDARELKENLDRRERVVLDILANYLSAEQLQDYQHF 1908
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL----QPERGK*GEPLVEGGGWKPG 516
VKMKS L+IEQR+LDDKI LG+EQ++CLL+SL +P+ G P G PG
Sbjct: 1909 VKMKSTLLIEQRKLDDKIKLGQEQVRCLLESLPSDFRPKAGAISLPPALTGHGTPG 1964
>ref|NP_001035549.1| protein Shroom4 [Mus musculus].
Length = 1475
Score = 196 bits (497), Expect = 3e-50
Identities = 102/152 (67%), Positives = 126/152 (82%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
L+DI AN+ALG+EVEA K VCK NEF+K+ +FIGDLDKVVNLLLSLSGRLARVENALN+
Sbjct: 1318 LDDINANAALGEEVEANLKAVCKSNEFEKYHLFIGDLDKVVNLLLSLSGRLARVENALNS 1377
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
+D S S ++ L+EK++ L Q DAKELKE++D RE +VF +++ YL Q+ L DY+HF
Sbjct: 1378 ID-SESNQEKLVLIEKKQQLTNQLADAKELKEHVDGREKLVFGMVSRYLPQDQLQDYQHF 1436
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKSALIIEQREL++KI LGEEQLKCL +SL
Sbjct: 1437 VKMKSALIIEQRELEEKIKLGEEQLKCLKESL 1468
>ref|NP_082193.2| protein Shroom1 [Mus musculus].
Length = 823
Score = 100 bits (248), Expect = 3e-21
Identities = 57/148 (38%), Positives = 85/148 (57%)
Frame = +1
Query: 13 QANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLDDS 192
Q N AL EA C P E ++FR F+ DL++V+ LLL L RL RV AL +
Sbjct: 652 QRNGAL----EAAVSQACTPRELERFRRFMTDLERVLGLLLLLGSRLVRVNLALARAGSN 707
Query: 193 ASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHFVKMK 372
+ P +R SLL++ ++L +Q E+AKELKE++ RRE + +L L E L Y + K
Sbjct: 708 SDPDERASLLQRLQLLQRQQEEAKELKEHVARREQTLRQVLERELPAEHLRSYCVLLASK 767
Query: 373 SALIIEQRELDDKIHLGEEQLKCLLDSL 456
+ ++ +QR LDD+I ++QL + L
Sbjct: 768 ARILSQQRSLDDRIRFLKDQLDTIWSDL 795
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,422,452
Number of extensions: 1161120
Number of successful extensions: 7923
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7816
Number of HSP's successfully gapped: 6
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004943
(1068 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360274.1| PREDICTED: LOW QUALITY PROTEIN: protein Shro... 304 6e-83
Alignment gi|XP_003357031.1| PREDICTED: protein Shroom3-like [Sus scrofa]. 217 1e-56
Alignment gi|XP_003135136.1| PREDICTED: LOW QUALITY PROTEIN: protein Shro... 202 3e-52
Alignment gi|XP_003123981.1| PREDICTED: protein Shroom1 [Sus scrofa]. 103 1e-22
>ref|XP_003360274.1| PREDICTED: LOW QUALITY PROTEIN: protein Shroom2-like [Sus scrofa].
Length = 1547
Score = 304 bits (778), Expect = 6e-83
Identities = 157/158 (99%), Positives = 157/158 (99%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN
Sbjct: 1390 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 1449
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
LDDSAS SDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF
Sbjct: 1450 LDDSASASDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 1509
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK 474
VKMKSALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK
Sbjct: 1510 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSLQPERGK 1547
>ref|XP_003357031.1| PREDICTED: protein Shroom3-like [Sus scrofa].
Length = 1854
Score = 217 bits (552), Expect = 1e-56
Identities = 108/152 (71%), Positives = 129/152 (84%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
L DI+ N+ALG+EVEA ++CKPNE DK++MFIGDLDKVVNLLLSLSGRLARVEN L+
Sbjct: 1663 LMDIKLNNALGEEVEAWISELCKPNEIDKYKMFIGDLDKVVNLLLSLSGRLARVENVLSG 1722
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
L AS +R SL EK++VL QHEDA+ELKENLDRRE +V DILA+YLS+E L DY+HF
Sbjct: 1723 LGQDASDEERSSLNEKRKVLAGQHEDARELKENLDRRERVVLDILANYLSEEQLQDYQHF 1782
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKS L+IEQR+LDDKI LG+EQ+KCLL+SL
Sbjct: 1783 VKMKSTLLIEQRKLDDKIKLGQEQVKCLLESL 1814
>ref|XP_003135136.1| PREDICTED: LOW QUALITY PROTEIN: protein Shroom4-like [Sus scrofa].
Length = 1489
Score = 202 bits (513), Expect = 3e-52
Identities = 105/152 (69%), Positives = 128/152 (84%)
Frame = +1
Query: 1 LEDIQANSALGDEVEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNN 180
LEDI ANSALG+EVEA K VCK NEF+K+R+FIGDLDKVVNLLLSLSGRLARVENALN+
Sbjct: 1332 LEDISANSALGEEVEANLKAVCKSNEFEKYRLFIGDLDKVVNLLLSLSGRLARVENALNS 1391
Query: 181 LDDSASPSDRQSLLEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHF 360
+D A+ ++ L+EK++ L Q DAKELKE++DRRE +VF +++ YL Q+ L DY+HF
Sbjct: 1392 IDSEAN-QEKLVLIEKKQQLTGQLTDAKELKEHVDRREKLVFGMVSRYLPQDQLQDYQHF 1450
Query: 361 VKMKSALIIEQRELDDKIHLGEEQLKCLLDSL 456
VKMKSALIIEQREL++KI LGEEQLKCL +SL
Sbjct: 1451 VKMKSALIIEQRELEEKIKLGEEQLKCLRESL 1482
>ref|XP_003123981.1| PREDICTED: protein Shroom1 [Sus scrofa].
Length = 872
Score = 103 bits (258), Expect = 1e-22
Identities = 64/185 (34%), Positives = 99/185 (53%)
Frame = +1
Query: 40 VEALAKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLDDSASPSDRQSL 219
+EA C P+E ++F F+ DL++V+ LLL L RLARV AL P ++ SL
Sbjct: 688 LEAAVGQACAPHELERFSRFMADLERVLGLLLLLGSRLARVRRALARAGADGDPEEQASL 747
Query: 220 LEKQRVLVQQHEDAKELKENLDRREGIVFDILASYLSQESLADYEHFVKMKSALIIEQRE 399
L++ +L +Q EDAKELK+++ RRE + ++L L E L Y + K+A++ +QR
Sbjct: 748 LQRLGLLQRQQEDAKELKQHVARRERALHEVLVRALPAEELRTYRALLAGKAAVLAQQRS 807
Query: 400 LDDKIHLGEEQLKCLLDSLQPERGK*GEPLVEGGGWKPGRPARVPRVHVHTPACIGLP*P 579
LD+++ L ++QL + + L R P G P +P +P + T G P P
Sbjct: 808 LDERVRLLQDQLDAVRNDL-GRRPPPPRPAWPPGTCPPDKPPFLPSHPLVTGGGGGEPCP 866
Query: 580 EPSRS 594
S S
Sbjct: 867 SLSLS 871
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,640,325
Number of extensions: 929175
Number of successful extensions: 7099
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6994
Number of HSP's successfully gapped: 4
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004943
(1068 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 1665 0.0
Sscrofa_Chr08 123 2e-25
>Sscrofa_ChrX
|| Length = 144288218
Score = 1665 bits (840), Expect = 0.0
Identities = 856/860 (99%), Gaps = 1/860 (0%)
Strand = Plus / Plus
Query: 210 gcaatccctgctcgagaagcagcgggtcctggtccagcagcacgaggacgccaaggagct 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6798969 gcaatccctgctcgagaagcagcgggtcctggtccagcagcacgaggacgccaaggagct 6799028
Query: 270 gaaagagaacctggaccgccgcgagggcatcgtcttcgacatcctggccagctacctcag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799029 gaaagagaacctggaccgccgcgagggcatcgtcttcgacatcctggccagctacctcag 6799088
Query: 330 ccaggagagcctggcggactacgagcacttcgtgaagatgaagtccgccctcatcatcga 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799089 ccaggagagcctggcggactacgagcacttcgtgaagatgaagtccgccctcatcatcga 6799148
Query: 390 gcagcgggagctggacgacaaaatccacctgggtgaggagcagctgaagtgcctgttgga 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799149 gcagcgggagctggacgacaaaatccacctgggtgaggagcagctgaagtgcctgttgga 6799208
Query: 450 cagccttcagcccgaaagaggcaaatgaggggagcccctggtggagggcggaggctggaa 509
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 6799209 cagccttcagcccgaaagaggcaaatgaggggagtccctggtggagggcggaggccggaa 6799268
Query: 510 gccgggccgtccagctcgggtccccagggtgcacgtgcacaccccagcctgcatcggtct 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799269 gccgggccgtccagctcgggtccccagggtgcacgtgcacaccccagcctgcatcggtct 6799328
Query: 570 cccgtagccagaaccctcccgtagcgaaacagcctttagaaaagcaataacattcgtgtg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799329 cccgtagccagaaccctcccgtagcgaaacagcctttagaaaagcaataacattcgtgtg 6799388
Query: 630 cgcgtttggggtgatttattgaatgtctcacttcccttcttcgaggcagagcagaggggc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799389 cgcgtttggggtgatttattgaatgtctcacttcccttcttcgaggcagagcagaggggc 6799448
Query: 690 ccctgttagctgtttccttgaagtggccccacaggggccgggccctgccgagcagggagt 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799449 ccctgttagctgtttccttgaagtggccccacaggggccgggccctgccgagcagggagt 6799508
Query: 750 acccgaggcgcggactgggctcggtcccttggtgtgggcactgggtcattcctggtgtga 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799509 acccgaggcgcggactgggctcggtcccttggtgtgggcactgggtcattcctggtgtga 6799568
Query: 810 ggcctgcccttccgtcttcccccgctcagccccacggctcgggaagcagccgagcaaatc 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799569 ggcctgcccttccgtcttcccccgctcagccccacggctcgggaagcagccgagcaaatc 6799628
Query: 870 tcaaagaaggtgcagcagaggggacagcctggcggcccagctgtcccgcggtgaaccggg 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799629 tcaaagaaggtgcagcagaggggacagcctggcggcccagctgtcccgcggtgaaccggg 6799688
Query: 930 ggtgtgggctgccaggttttcctgctcatccaccagcgccgagcatttgccgtgtctgtc 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799689 ggtgtgggctgccaggttttcctgctcatccaccagcgccgagcatttgccgtgtctgtc 6799748
Query: 990 ataggatggtgactttggccccagc-aaaaccatgatggctatgatgatgctctgtgaac 1048
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6799749 ataggatggtgactttggccccagcaaaaaccatgatggctatgatgatgctctgtgaac 6799808
Query: 1049 agttggaaaaggcagcagtt 1068
||||||||| ||||||||||
Sbjct: 6799809 agttggaaagggcagcagtt 6799828
Score = 408 bits (206), Expect = e-111
Identities = 209/210 (99%)
Strand = Plus / Plus
Query: 1 ctggaggacatccaggccaacagcgcgcttggggacgaggtggaggccctcgccaaggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6796598 ctggaggacatccaggccaacagcgcgcttggggacgaggtggaggccctcgccaaggac 6796657
Query: 61 gtctgcaagcccaacgagttcgacaagttccgcatgtttatcggggacctggacaaggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6796658 gtctgcaagcccaacgagttcgacaagttccgcatgtttatcggggacctggacaaggtg 6796717
Query: 121 gtgaacctcctgctgtcgctgtcaggccgcctggcccgcgtggagaacgccctcaataac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6796718 gtgaacctcctgctgtcgctgtcaggccgcctggcccgcgtggagaacgccctcaataac 6796777
Query: 181 ctggacgacagcgcttctcccagcgatcgg 210
|||||||||||||||||| |||||||||||
Sbjct: 6796778 ctggacgacagcgcttctgccagcgatcgg 6796807
Score = 60.0 bits (30), Expect = 3e-06
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 95 tgtttatcggggacctggacaaggtggtgaacctcctgctgtcgctgtcaggccgcctgg 154
|||||||||||||||||||||| || || ||| | |||||||||| || || || ||||
Sbjct: 49205375 tgtttatcggggacctggacaaagtagtcaacttgttgctgtcgctctctggacgactgg 49205434
Query: 155 cccgcgtggagaacgccctcaa 176
|||| |||||||| || |||||
Sbjct: 49205435 cccgggtggagaatgctctcaa 49205456
>Sscrofa_Chr08
|| Length = 148491826
Score = 123 bits (62), Expect = 2e-25
Identities = 101/114 (88%)
Strand = Plus / Plus
Query: 62 tctgcaagcccaacgagttcgacaagttccgcatgtttatcggggacctggacaaggtgg 121
||||||||||||||||| | ||||||| | ||||| ||||||||||||||||||||||
Sbjct: 76637664 tctgcaagcccaacgagattgacaagtacaagatgttcatcggggacctggacaaggtgg 76637723
Query: 122 tgaacctcctgctgtcgctgtcaggccgcctggcccgcgtggagaacgccctca 175
||||||| |||||||| || || || |||||||||||||||||||||| |||||
Sbjct: 76637724 tgaacctgctgctgtccctctcggggcgcctggcccgcgtggagaacgtcctca 76637777
Score = 97.6 bits (49), Expect = 1e-17
Identities = 91/105 (86%)
Strand = Plus / Plus
Query: 345 ggactacgagcacttcgtgaagatgaagtccgccctcatcatcgagcagcgggagctgga 404
||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct: 71099526 ggactaccagcactttgtgaagatgaagtccaccctcctcatcgagcagcggaagctgga 71099585
Query: 405 cgacaaaatccacctgggtgaggagcagctgaagtgcctgttgga 449
|||||| ||| | ||||| |||||||| | ||||| ||| ||||
Sbjct: 71099586 cgacaagatcaagctgggccaggagcaggtcaagtgtctgctgga 71099630
Score = 97.6 bits (49), Expect = 1e-17
Identities = 91/105 (86%)
Strand = Plus / Plus
Query: 345 ggactacgagcacttcgtgaagatgaagtccgccctcatcatcgagcagcgggagctgga 404
||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct: 76641181 ggactaccagcactttgtgaagatgaagtccaccctcctcatcgagcagcggaagctgga 76641240
Query: 405 cgacaaaatccacctgggtgaggagcagctgaagtgcctgttgga 449
|||||| ||| | ||||| |||||||| | ||||| ||| ||||
Sbjct: 76641241 cgacaagatcaagctgggccaggagcaggtcaagtgtctgctgga 76641285
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,615,836
Number of extensions: 135
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 6
Length of query: 1068
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1047
Effective length of database: 2,808,413,156
Effective search space: 2940408574332
Effective search space used: 2940408574332
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)