Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004948
(976 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192686.1| interleukin-10 receptor subunit alpha [Bos t... 396 e-110
Alignment gi|XP_002693050.1| PREDICTED: interleukin 10 receptor, alpha-li... 396 e-110
Alignment gi|XP_002690307.1| PREDICTED: interleukin 22-binding protein-li... 59 5e-09
Alignment gi|XP_612334.4| PREDICTED: interleukin 22-binding protein [Bos ... 59 5e-09
Alignment gi|NP_001193271.1| interleukin-20 receptor subunit alpha [Bos t... 57 2e-08
Alignment gi|NP_001029483.1| interleukin-22 receptor subunit alpha-1 prec... 55 7e-08
Alignment gi|NP_001095645.1| interleukin-20 receptor subunit beta [Bos ta... 54 3e-07
Alignment gi|NP_001178426.1| interleukin-28 receptor subunit alpha [Bos t... 49 9e-06
Alignment gi|XP_002685756.1| PREDICTED: interleukin 28 receptor, alpha-li... 49 9e-06
>ref|NP_001192686.1| interleukin-10 receptor subunit alpha [Bos taurus].
Length = 584
Score = 396 bits (1018), Expect = e-110
Identities = 201/301 (66%), Positives = 227/301 (75%), Gaps = 6/301 (1%)
Frame = +1
Query: 91 MLPLLVVPLAMFLCLLLGSCAH----ELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYE 258
ML +V L L LLLGS AH ELP+PPS WFEAEFFHHVL+WTP PNQSESTYYE
Sbjct: 1 MLSHQIVKLVALLSLLLGSRAHGKDLELPRPPSAWFEAEFFHHVLYWTPIPNQSESTYYE 60
Query: 259 VELQRYGDKP--WKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSS 432
VEL RYG +P WK I CSQ LM+SCD+TMETLDLY SNGYRARVRAVD SQHSNWTS
Sbjct: 61 VELLRYGVEPTSWKSIQRCSQMLMMSCDVTMETLDLYRSNGYRARVRAVDGSQHSNWTSP 120
Query: 433 NTRFSVDEVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKV 612
NTRFS+DEVTLTV SV LEVHN I+G I+ PRP++AP GDTYE IFH+FREY+IEVRK
Sbjct: 121 NTRFSMDEVTLTVASVKLEVHNSNIVGAIQLPRPEVAPEGDTYENIFHNFREYQIEVRKA 180
Query: 613 PGPYKFKEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQYFTVTN 792
PG Y+ KV++E+F LPI RG+GE CVRVKPS+ SR NK+VWSKEECI+L QYFTVTN
Sbjct: 181 PGHYESHGKVKNESFKLPIPRGVGEFCVRVKPSVGSRVNKEVWSKEECILLTSQYFTVTN 240
Query: 793 LSIFFTFVXXXXXXXXXXXXXXXXVRRRGKLPTVLVFNDPSPFSLNGRAAPSETXDIIHP 972
+SIF TFV VRRRGKLP VLVF PSPF+L + + ET D +H
Sbjct: 241 ISIFLTFVLLLYGALAFCLTFQLYVRRRGKLPAVLVFKKPSPFNLISQFSHPETQDTVHT 300
Query: 973 L 975
L
Sbjct: 301 L 301
>ref|XP_002693050.1| PREDICTED: interleukin 10 receptor, alpha-like [Bos taurus].
Length = 584
Score = 396 bits (1018), Expect = e-110
Identities = 201/301 (66%), Positives = 227/301 (75%), Gaps = 6/301 (1%)
Frame = +1
Query: 91 MLPLLVVPLAMFLCLLLGSCAH----ELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYE 258
ML +V L L LLLGS AH ELP+PPS WFEAEFFHHVL+WTP PNQSESTYYE
Sbjct: 1 MLSHQIVKLVALLSLLLGSRAHGKDLELPRPPSAWFEAEFFHHVLYWTPIPNQSESTYYE 60
Query: 259 VELQRYGDKP--WKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSS 432
VEL RYG +P WK I CSQ LM+SCD+TMETLDLY SNGYRARVRAVD SQHSNWTS
Sbjct: 61 VELLRYGVEPTSWKSIQRCSQMLMMSCDVTMETLDLYRSNGYRARVRAVDGSQHSNWTSP 120
Query: 433 NTRFSVDEVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKV 612
NTRFS+DEVTLTV SV LEVHN I+G I+ PRP++AP GDTYE IFH+FREY+IEVRK
Sbjct: 121 NTRFSMDEVTLTVASVKLEVHNSNIVGAIQLPRPEVAPEGDTYENIFHNFREYQIEVRKA 180
Query: 613 PGPYKFKEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQYFTVTN 792
PG Y+ KV++E+F LPI RG+GE CVRVKPS+ SR NK+VWSKEECI+L QYFTVTN
Sbjct: 181 PGHYESHGKVKNESFKLPIPRGVGEFCVRVKPSVGSRVNKEVWSKEECILLTSQYFTVTN 240
Query: 793 LSIFFTFVXXXXXXXXXXXXXXXXVRRRGKLPTVLVFNDPSPFSLNGRAAPSETXDIIHP 972
+SIF TFV VRRRGKLP VLVF PSPF+L + + ET D +H
Sbjct: 241 ISIFLTFVLLLYGALAFCLTFQLYVRRRGKLPAVLVFKKPSPFNLISQFSHPETQDTVHT 300
Query: 973 L 975
L
Sbjct: 301 L 301
>ref|XP_002690307.1| PREDICTED: interleukin 22-binding protein-like [Bos taurus].
Length = 230
Score = 59.3 bits (142), Expect = 5e-09
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Frame = +1
Query: 151 AHELPKPPSVWFEAEFFHHVLHWTPSPN-QSESTYYEVELQRYGDKPWKPIPHCSQTLML 327
A+E KP V F++ FH++L W P ++ Y V+ + YG++ WK C
Sbjct: 25 ANESLKPQRVHFQSRNFHNILRWQPGQACLGNNSIYFVQYKMYGERQWKNKETCWGIREF 84
Query: 328 SCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVHNGII 507
CDLT ET D++ Y RV+ HS WT + E + + + NG +
Sbjct: 85 FCDLTNETSDIWEP--YYGRVKTALAGIHSGWTMTQRFIPWWETKIDPPVMNITHVNGSL 142
Query: 508 LGTIKPP 528
L + P
Sbjct: 143 LVNLHAP 149
>ref|XP_612334.4| PREDICTED: interleukin 22-binding protein [Bos taurus].
Length = 230
Score = 59.3 bits (142), Expect = 5e-09
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Frame = +1
Query: 151 AHELPKPPSVWFEAEFFHHVLHWTPSPN-QSESTYYEVELQRYGDKPWKPIPHCSQTLML 327
A+E KP V F++ FH++L W P ++ Y V+ + YG++ WK C
Sbjct: 25 ANESLKPQRVHFQSRNFHNILRWQPGQACLGNNSIYFVQYKMYGERQWKNKETCWGIREF 84
Query: 328 SCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVHNGII 507
CDLT ET D++ Y RV+ HS WT + E + + + NG +
Sbjct: 85 FCDLTNETSDIWEP--YYGRVKTALAGIHSGWTMTQRFIPWWETKIDPPVMNITHVNGSL 142
Query: 508 LGTIKPP 528
L + P
Sbjct: 143 LVNLHAP 149
>ref|NP_001193271.1| interleukin-20 receptor subunit alpha [Bos taurus].
Length = 558
Score = 57.4 bits (137), Expect = 2e-08
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Frame = +1
Query: 82 ALRMLPLLVVPLAMFLCLLLGS------CAH-ELPKPPSVWFEAEFFHHVLHWTPSPN-Q 237
A R P +P +FL L+ CA +LPKP +V F + ++L W P Q
Sbjct: 11 AARGAPAPGLPALLFLLLVAAPTGRAVPCASGDLPKPTNVAFISINMKNILQWNPPEGLQ 70
Query: 238 SESTYYEVELQRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHS 417
Y V+ YG K W C CDL+ ET D H Y A+V+A+ + S
Sbjct: 71 GMEVSYTVQYFIYGQKKWLNKSECRNISRTYCDLSAETSDYEHQ--YYAKVKAMWGTNCS 128
Query: 418 NWTSS-------NTRFSVDEVTLTVDSVTLEV 492
W + T+ EV LT D ++ +
Sbjct: 129 KWAETGRFYPFLETQIGPPEVALTTDEKSISI 160
>ref|NP_001029483.1| interleukin-22 receptor subunit alpha-1 precursor [Bos taurus].
Length = 581
Score = 55.5 bits (132), Expect = 7e-08
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Frame = +1
Query: 178 VWFEAEFFHHVLHWTPSPNQSESTYYEVELQRYGDKPWKPIPHCSQTLMLSCDLTMETLD 357
V F++ F ++L W P T Y V+ + YG++ W C + SC+LTMET +
Sbjct: 28 VKFQSSNFENILTWDGRPESPPDTVYSVQYKTYGEEEWLEKEGCQRITQKSCNLTMETSN 87
Query: 358 LYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVHNGIILGTIKPPRPK 537
L + Y ARV A D + S +N S+ ++ VT I + P
Sbjct: 88 L--TELYYARVTATDGAGRSATKMTNRFSSLQHTSIKPPDVTCIPKVRSIQMIVHPTYTP 145
Query: 538 IAPAGD---TYETIFHDFREYEIEVR 606
I T E IF D Y +++R
Sbjct: 146 IRAQNGHQLTLENIFQDLL-YHLKLR 170
>ref|NP_001095645.1| interleukin-20 receptor subunit beta [Bos taurus].
Length = 305
Score = 53.5 bits (127), Expect = 3e-07
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Frame = +1
Query: 118 AMFLCLLLGSCAHELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVELQ-----RYGD 282
A+ CL + A LP P ++ ++ HVL W+P E +Y VE Q Y
Sbjct: 17 ALIPCLFVDGVA-VLPAPQNLSVQSTNMKHVLTWSPVTVPEEIVHYSVEYQGEYESLYTS 75
Query: 283 KPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVT 462
W P CS T CD+T D+ + Y RVRA S S W++ RF+ +
Sbjct: 76 HIWIPSIWCSPTQRPECDITE---DITATVSYSLRVRATLGSLTSTWSTLKHRFNQNSTI 132
Query: 463 LT 468
LT
Sbjct: 133 LT 134
>ref|NP_001178426.1| interleukin-28 receptor subunit alpha [Bos taurus].
Length = 495
Score = 48.5 bits (114), Expect = 9e-06
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Frame = +1
Query: 121 MFLCLLLGSCAHELPKPP-SVWFEAEFFHHVLHWTPSPNQSESTYYEVELQRYG-DKPWK 294
+ LCLL + L PP +V + F L W P P ++ Y V Q + + W+
Sbjct: 10 LLLCLLQSAPGRPLLAPPQNVTLLSRDFSVYLTWLPGPGNPQNVTYFVAYQSFAPPRRWR 69
Query: 295 PIPHCSQTLMLSCDL-TMETLDLYHSNGYRARVRAVDKSQHSNWTSS 432
+ C+ T L C L +E DL N ++ RV+AV S S W S
Sbjct: 70 RVKKCAGTKELVCSLMCLEKQDL--CNKFKGRVQAVSPSARSPWVES 114
>ref|XP_002685756.1| PREDICTED: interleukin 28 receptor, alpha-like [Bos taurus].
Length = 495
Score = 48.5 bits (114), Expect = 9e-06
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Frame = +1
Query: 121 MFLCLLLGSCAHELPKPP-SVWFEAEFFHHVLHWTPSPNQSESTYYEVELQRYG-DKPWK 294
+ LCLL + L PP +V + F L W P P ++ Y V Q + + W+
Sbjct: 10 LLLCLLQSAPGRPLLAPPQNVTLLSRDFSVYLTWLPGPGNPQNVTYFVAYQSFAPPRRWR 69
Query: 295 PIPHCSQTLMLSCDL-TMETLDLYHSNGYRARVRAVDKSQHSNWTSS 432
+ C+ T L C L +E DL N ++ RV+AV S S W S
Sbjct: 70 RVKKCAGTKELVCSLMCLEKQDL--CNKFKGRVQAVSPSARSPWVES 114
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,154,867
Number of extensions: 1334516
Number of successful extensions: 6695
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6588
Number of HSP's successfully gapped: 9
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004948
(976 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853473.1| PREDICTED: similar to Interleukin-10 receptor a... 357 1e-98
Alignment gi|XP_854233.1| PREDICTED: similar to interleukin 22-binding pr... 67 3e-11
Alignment gi|XP_541119.2| PREDICTED: similar to interleukin 20 receptor, ... 59 9e-09
Alignment gi|XP_855113.1| PREDICTED: similar to interleukin 22 receptor, ... 52 1e-06
>ref|XP_853473.1| PREDICTED: similar to Interleukin-10 receptor alpha chain precursor
(IL-10R-A) (IL-10R1) [Canis familiaris].
Length = 653
Score = 357 bits (915), Expect = 1e-98
Identities = 176/273 (64%), Positives = 198/273 (72%)
Frame = +1
Query: 157 ELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVELQRYGDKPWKPIPHCSQTLMLSCD 336
ELP P SVWFEAEFF H+LHWTP P S STYYEVEL RYG +PWK IP C+QT +L CD
Sbjct: 106 ELPSPSSVWFEAEFFSHILHWTPIPKPSNSTYYEVELLRYGLEPWKRIPSCNQTQVLFCD 165
Query: 337 LTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVHNGIILGT 516
LTM TLDLYH+NGYRA+VRAVD +Q SNWT +NTRFS+DEV LTV SV LEV NGIILG
Sbjct: 166 LTMVTLDLYHNNGYRAKVRAVDGNQSSNWTLTNTRFSMDEVNLTVGSVKLEVENGIILGK 225
Query: 517 IKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPYKFKEKVQHENFSLPILRGLGELCV 696
I+PPRP+IAP GDTYE+IF FREY+IE+RKVPG Y F + V+HENFSL LG CV
Sbjct: 226 IQPPRPRIAPTGDTYESIFQHFREYKIEIRKVPGNYTFTKTVKHENFSLSPPGKLGNFCV 285
Query: 697 RVKPSIISRTNKKVWSKEECIVLAPQYFTVTNLSIFFTFVXXXXXXXXXXXXXXXXVRRR 876
+VKPS+ SR N +WSKEEC+VL QYFTVTNLSIFFTFV V R
Sbjct: 286 KVKPSVSSRMNNGIWSKEECVVLTYQYFTVTNLSIFFTFVLLLCGALAYCLALHLYVWHR 345
Query: 877 GKLPTVLVFNDPSPFSLNGRAAPSETXDIIHPL 975
KLP VL+F P PFS + E D IHPL
Sbjct: 346 RKLPPVLIFKKPQPFSFISQLPYPEPQDTIHPL 378
>ref|XP_854233.1| PREDICTED: similar to interleukin 22-binding protein isoform 2
[Canis familiaris].
Length = 231
Score = 67.0 bits (162), Expect = 3e-11
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Frame = +1
Query: 151 AHELPKPPSVWFEAEFFHHVLHWTPSPN-QSESTYYEVELQRYGDKPWKPIPHCSQTLML 327
A+E KP V F++ FH++LHW P S + Y V+ + YG + WK C L
Sbjct: 25 AYESLKPQRVHFQSRNFHNILHWQPGRACTSNGSVYFVQYKMYGQRQWKNKEDCWGILEC 84
Query: 328 SCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVHNGII 507
CDLT ET D+ Y RVR HS WT + E + + + NG +
Sbjct: 85 FCDLTNETSDI--QEPYYGRVRTTSAGIHSGWTMTQRFTPWWETKIDPPIINITQVNGSL 142
Query: 508 LGTIKPP 528
L + P
Sbjct: 143 LVILHAP 149
>ref|XP_541119.2| PREDICTED: similar to interleukin 20 receptor, alpha [Canis
familiaris].
Length = 558
Score = 58.5 bits (140), Expect = 9e-09
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 13/150 (8%)
Frame = +1
Query: 82 ALRMLPLLVVPLAM-----FLCLLLGSCAHELPKPPSVWFEAEFFHHVLHWTPSPN-QSE 243
ALR+L LL++ A LC+ G LPKP ++ F + ++L W+P Q
Sbjct: 22 ALRLLLLLLLLAAAPSGRAVLCISGG-----LPKPTNITFLSINMKNILQWSPPEGLQGA 76
Query: 244 STYYEVELQRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNW 423
Y V+ YG K W C CDL++ET D H Y A+V+A+ ++ S W
Sbjct: 77 EVTYTVQYFIYGQKKWLSKSECRNINRTCCDLSVETSDYEHQ--YYAKVKAIWETNCSKW 134
Query: 424 TSS-------NTRFSVDEVTLTVDSVTLEV 492
+ T+ V LT D ++ +
Sbjct: 135 AETGRFYPFLETQIGPPRVALTTDEKSISI 164
>ref|XP_855113.1| PREDICTED: similar to interleukin 22 receptor, alpha 1 [Canis
familiaris].
Length = 577
Score = 51.6 bits (122), Expect = 1e-06
Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Frame = +1
Query: 178 VWFEAEFFHHVLHWTPSPNQSESTYYEVELQRYGDKPWKPIPHCSQTLMLSCDLTMETLD 357
V F++ F ++L W + Y VE + YG K W C + SC+LT ET +
Sbjct: 27 VKFQSSNFENILTWDSGLESAPDVVYSVEYKTYGKKEWLAKEGCQRITRKSCNLTTETGN 86
Query: 358 LYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVHNGIILGTIKPPRPK 537
H+ Y ARV AV S ++ S+ + T+ VT I + P
Sbjct: 87 --HTEHYYARVTAVSAGGRSATKMTDRFSSMQQTTIKPPDVTCIPKVRSIQMIVHPTSTP 144
Query: 538 I-APAGD--TYETIFHD-FREYEIEV 603
I A G T E IF D F E++V
Sbjct: 145 IHAEDGHRLTLEDIFQDLFYRLELQV 170
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,102,241
Number of extensions: 1378511
Number of successful extensions: 7217
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6865
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004948
(976 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001549.2| interleukin-10 receptor subunit alpha precursor... 371 e-103
Alignment gi|NP_067081.2| interleukin-22 receptor subunit alpha-1 precurs... 72 1e-12
Alignment gi|NP_851826.1| interleukin-22 receptor subunit alpha-2 isoform... 69 8e-12
Alignment gi|NP_851827.1| interleukin-22 receptor subunit alpha-2 isoform... 67 2e-11
Alignment gi|NP_055247.2| interleukin-20 receptor subunit alpha precursor... 60 2e-09
Alignment gi|NP_653318.2| interleukin-20 receptor subunit beta precursor ... 49 5e-06
>ref|NP_001549.2| interleukin-10 receptor subunit alpha precursor [Homo sapiens].
Length = 578
Score = 371 bits (953), Expect = e-103
Identities = 195/298 (65%), Positives = 217/298 (72%), Gaps = 3/298 (1%)
Frame = +1
Query: 91 MLPLLVVPLAMFLCLLLGSCAH--ELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVE 264
MLP LVV LA L L LGS AH ELP PPSVWFEAEFFHH+LHWTP PNQSEST YEV
Sbjct: 1 MLPCLVVLLAALLSLRLGSDAHGTELPSPPSVWFEAEFFHHILHWTPIPNQSESTCYEVA 60
Query: 265 LQRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRF 444
L RYG + W I +CSQTL S DLT TLDLYHSNGYRARVRAVD S+HSNWT +NTRF
Sbjct: 61 LLRYGIESWNSISNCSQTL--SYDLTAVTLDLYHSNGYRARVRAVDGSRHSNWTVTNTRF 118
Query: 445 SVDEVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPY 624
SVDEVTLTV SV LE+HNG ILG I+ PRPK+APA DTYE+IF FREYEI +RKVPG +
Sbjct: 119 SVDEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPANDTYESIFSHFREYEIAIRKVPGNF 178
Query: 625 KF-KEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQYFTVTNLSI 801
F +KV+HENFSL +GE CV+VKPS+ SR+NK +WSKEECI L QYFTVTN+ I
Sbjct: 179 TFTHKKVKHENFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKEECISLTRQYFTVTNVII 238
Query: 802 FFTFVXXXXXXXXXXXXXXXXVRRRGKLPTVLVFNDPSPFSLNGRAAPSETXDIIHPL 975
FF FV VRRR KLP+VL+F PSPF + ET D IHPL
Sbjct: 239 FFAFVLLLSGALAYCLALQLYVRRRKKLPSVLLFKKPSPFIFISQRPSPETQDTIHPL 296
>ref|NP_067081.2| interleukin-22 receptor subunit alpha-1 precursor [Homo sapiens].
Length = 574
Score = 71.6 bits (174), Expect = 1e-12
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 11/201 (5%)
Frame = +1
Query: 133 LLLGSCAHELPKPPS-----VWFEAEFFHHVLHWTPSPNQSESTYYEVELQRYGDKPWKP 297
L +GS A P+ PS V F++ F ++L W P + T Y +E + YG++ W
Sbjct: 8 LTVGSLAAHAPEDPSDLLQHVKFQSSNFENILTWDSGPEGTPDTVYSIEYKTYGERDWVA 67
Query: 298 IPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDS 477
C + SC+LT+ET +L + Y ARV AV S ++ S+ TL
Sbjct: 68 KKGCQRITRKSCNLTVETGNL--TELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPD 125
Query: 478 VTLEVHNGIILGTIKPPRPKIAPAGD----TYETIFHD-FREYEIEVRKVPGPYKFKEKV 642
VT + + I P P AGD T E IFHD F E++V + + ++
Sbjct: 126 VTC-ISKVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQR 184
Query: 643 QHENFSL-PILRGLGELCVRV 702
++E F L P LG + + V
Sbjct: 185 EYEFFGLTPDTEFLGTIMICV 205
>ref|NP_851826.1| interleukin-22 receptor subunit alpha-2 isoform 2 [Homo sapiens].
Length = 231
Score = 68.6 bits (166), Expect = 8e-12
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 15/171 (8%)
Frame = +1
Query: 115 LAMFLCLLLGS-CAHELPKPPSVWFEAEFFHHVLHWTPSPNQS-ESTYYEVELQRYGDKP 288
++ FL + G+ HE KP V F++ FH++L W P + S+ Y V+ + YG +
Sbjct: 12 ISFFLTGVAGTQSTHESLKPQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQRQ 71
Query: 289 WKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFS------V 450
WK C T LSCDLT ET D+ Y RVRA +S W S RF+ +
Sbjct: 72 WKNKEDCWGTQELSCDLTSETSDI--QEPYYGRVRAASAGSYSEW-SMTPRFTPWWETKI 128
Query: 451 DEVTLTVDSVTLEVHNGIILGTIKPP-------RPKIAPAGDTYETIFHDF 582
D + + V NG +L + P + K D YE ++ F
Sbjct: 129 DPPVMNITQV-----NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVF 174
>ref|NP_851827.1| interleukin-22 receptor subunit alpha-2 isoform 3 [Homo sapiens].
Length = 130
Score = 67.0 bits (162), Expect = 2e-11
Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Frame = +1
Query: 115 LAMFLCLLLGS-CAHELPKPPSVWFEAEFFHHVLHWTPSPNQS-ESTYYEVELQRYGDKP 288
++ FL + G+ HE KP V F++ FH++L W P + S+ Y V+ + YG +
Sbjct: 12 ISFFLTGVAGTQSTHESLKPQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQRQ 71
Query: 289 WKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFS 447
WK C T LSCDLT ET D+ Y RVRA +S W S RF+
Sbjct: 72 WKNKEDCWGTQELSCDLTSETSDI--QEPYYGRVRAASAGSYSEW-SMTPRFT 121
>ref|NP_055247.2| interleukin-20 receptor subunit alpha precursor [Homo sapiens].
Length = 553
Score = 60.5 bits (145), Expect = 2e-09
Identities = 63/253 (24%), Positives = 102/253 (40%), Gaps = 9/253 (3%)
Frame = +1
Query: 85 LRMLPLLVVPLAMFLCLLLGSCAHELPKPPSVWFEAEFFHHVLHWTPSPN-QSESTYYEV 261
L + PLL++ LA + + LPKP ++ F + +VL WTP Q Y V
Sbjct: 12 LPLPPLLLLLLAAPWGRAVPCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKVTYTV 71
Query: 262 ELQRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSS--- 432
+ YG K W C CDL+ ET D H Y A+V+A+ ++ S W S
Sbjct: 72 QYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQ--YYAKVKAIWGTKCSKWAESGRF 129
Query: 433 ----NTRFSVDEVTLTVDSVTLEVHNGIILGTIKPPR-PKIAPAGDTYETIFHDFREYEI 597
T+ EV LT D ++ V ++ K R P+ P + + I+ + + Y +
Sbjct: 130 YPFLETQIGPPEVALTTDEKSISV---VLTAPEKWKRNPEDLPV--SMQQIYSNLK-YNV 183
Query: 598 EVRKVPGPYKFKEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQY 777
V + + V + L L CV V+ + + S+++C
Sbjct: 184 SVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKDQ 243
Query: 778 FTVTNLSIFFTFV 816
+ I F +V
Sbjct: 244 SSEFKAKIIFWYV 256
>ref|NP_653318.2| interleukin-20 receptor subunit beta precursor [Homo sapiens].
Length = 311
Score = 49.3 bits (116), Expect = 5e-06
Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Frame = +1
Query: 118 AMFLCLLLGSCAHELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVELQ-----RYGD 282
A+ CLL A LP P ++ + H+L W+P E+ YY VE Q Y
Sbjct: 22 ALIPCLLTDEVAI-LPAPQNLSVLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESLYTS 80
Query: 283 KPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVT 462
W P CS T CD+T D+ + Y RVRA SQ S W+ F+ +
Sbjct: 81 HIWIPSSWCSLTEGPECDVTD---DITATVPYNLRVRATLGSQTSAWSILKHPFNRNSTI 137
Query: 463 LT 468
LT
Sbjct: 138 LT 139
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,085,618
Number of extensions: 1337125
Number of successful extensions: 6550
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6466
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004948
(976 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032374.1| interleukin-10 receptor subunit alpha precursor... 278 5e-75
Alignment gi|NP_839989.2| interleukin-22 receptor subunit alpha-2 precurs... 65 1e-10
Alignment gi|NP_766374.1| interleukin-20 receptor subunit alpha precursor... 62 9e-10
Alignment gi|NP_839988.1| interleukin-22 receptor subunit alpha-1 precurs... 57 3e-08
Alignment gi|NP_001028715.2| interleukin 20 receptor beta precursor [Mus ... 51 2e-06
>ref|NP_032374.1| interleukin-10 receptor subunit alpha precursor [Mus musculus].
Length = 575
Score = 278 bits (711), Expect = 5e-75
Identities = 152/296 (51%), Positives = 186/296 (62%), Gaps = 2/296 (0%)
Frame = +1
Query: 88 RMLPLLVVPLAMFLCLLLGSCAHELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVEL 267
R+LP LV ++ L + + ELP P VWFEA FF H+LHW P PNQSESTYYEV L
Sbjct: 4 RLLPFLVTISSLSLEFI--AYGTELPSPSYVWFEARFFQHILHWKPIPNQSESTYYEVAL 61
Query: 268 QRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYH-SNGYRARVRAVDKSQHSNWTSSNTRF 444
++YG+ W I C + LSCDLT TLDLYH S GYRARVRAVD SQ+SNWT++ TRF
Sbjct: 62 KQYGNSTWNDIHICRKAQALSCDLTTFTLDLYHRSYGYRARVRAVDNSQYSNWTTTETRF 121
Query: 445 SVDEVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPY 624
+VDEV LTVDSVTL+ +GII GTI PPRP I PAGD YE +F D R Y+I +RK
Sbjct: 122 TVDEVILTVDSVTLKAMDGIIYGTIHPPRPTITPAGDEYEQVFKDLRVYKISIRKFSELK 181
Query: 625 KFKEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVL-APQYFTVTNLSI 801
++V+ E F+L + G+ + CV+V P + SR NK WS+E+C+++ QYFTVTNLSI
Sbjct: 182 NATKRVKQETFTLTVPIGVRKFCVKVLPRLESRINKAEWSEEQCLLITTEQYFTVTNLSI 241
Query: 802 FFTFVXXXXXXXXXXXXXXXXVRRRGKLPTVLVFNDPSPFSLNGRAAPSETXDIIH 969
+R GKLPTVLVF P F P ET D IH
Sbjct: 242 -LVISMLLFCGILVCLVLQWYIRHPGKLPTVLVFKKPHDFFPANPLCP-ETPDAIH 295
>ref|NP_839989.2| interleukin-22 receptor subunit alpha-2 precursor [Mus musculus].
Length = 230
Score = 64.7 bits (156), Expect = 1e-10
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 6/140 (4%)
Frame = +1
Query: 127 LCLLLGSCAHELPK-----PPSVWFEAEFFHHVLHWTPSPN-QSESTYYEVELQRYGDKP 288
L +LL S P P V F++ FH++LHW + S ++ Y V+ + YG
Sbjct: 11 LIILLSSATEIQPARVSLTPQKVRFQSRNFHNILHWQAGSSLPSNNSIYFVQYKMYGQSQ 70
Query: 289 WKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLT 468
W+ C T L CDLT ETLD Y Y RV +HS WT + E L
Sbjct: 71 WEDKVDCWGTTALFCDLTNETLDPYEL--YYGRVMTACAGRHSAWTRTPRFTPWWETKLD 128
Query: 469 VDSVTLEVHNGIILGTIKPP 528
VT+ N + ++PP
Sbjct: 129 PPVVTITRVNASLRVLLRPP 148
>ref|NP_766374.1| interleukin-20 receptor subunit alpha precursor [Mus musculus].
Length = 546
Score = 61.6 bits (148), Expect = 9e-10
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 12/252 (4%)
Frame = +1
Query: 97 PLLVVPLAMFL--------CLLLGSCAHELPKPPSVWFEAEFFHHVLHWTPSPN-QSEST 249
PLL++ L + L C+ G LPKP ++ F + +VLHW P +
Sbjct: 16 PLLLLTLLLLLAASGRAVPCVFCG-----LPKPTNITFLSINMKNVLHWNPPESLHGVEV 70
Query: 250 YYEVELQRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTS 429
Y V+ YG K W C CDL++ET D H + A+V+A+ +++ S W
Sbjct: 71 TYTVQYFIYGQKKWLNASKCGSINRTYCDLSVETSDYEHQ--FYAKVKAIWEARCSEWAE 128
Query: 430 SNTRFSVDEVTLTVDSVTLEV-HNGIILGTIKPPRPKIAPAGDT--YETIFHDFREYEIE 600
+ + E ++ V L I + P + K P T + I+ + + Y +
Sbjct: 129 TERFYPFLETQVSPPEVALTTGEKSISIALTAPEKWKRNPQDHTVSMQQIYPNLK-YNVS 187
Query: 601 VRKVPGPYKFKEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQYF 780
V + + V + L L CV V+ + + S+++CI
Sbjct: 188 VYNTKSRRTWSQCVTNSTLVLSWLEPNTLYCVHVESLVPGPPRLPMPSQKQCISTLEVQT 247
Query: 781 TVTNLSIFFTFV 816
+ + F +V
Sbjct: 248 SAWKAKVIFWYV 259
>ref|NP_839988.1| interleukin-22 receptor subunit alpha-1 precursor [Mus musculus].
Length = 581
Score = 56.6 bits (135), Expect = 3e-08
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 4/146 (2%)
Frame = +1
Query: 178 VWFEAEFFHHVLHWTPSPNQSESTYYEVELQRYGDKPWKPIPHCSQTLMLSCDLTMETLD 357
V F++ F ++L W P + T Y VE ++YG++ W C + C+LTMET +
Sbjct: 28 VKFQSSNFENILTWDGGPASTSDTVYSVEYKKYGERKWLAKAGCQRITQKFCNLTMETRN 87
Query: 358 LYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVHNGIILGTIKPP-RP 534
H+ Y A+V AV ++ S+ T+ VT I + P P
Sbjct: 88 --HTEFYYAKVTAVSAGGPPVTKMTDRFSSLQHTTIKPPDVTCIPKVRSIQMLVHPTLTP 145
Query: 535 KIAPAGD--TYETIFHD-FREYEIEV 603
++ G T E IFHD F E+ V
Sbjct: 146 VLSEDGHQLTLEEIFHDLFYRLELHV 171
>ref|NP_001028715.2| interleukin 20 receptor beta precursor [Mus musculus].
Length = 308
Score = 50.8 bits (120), Expect = 2e-06
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Frame = +1
Query: 160 LPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVELQ-----RYGDKPWKPIPHCSQTLM 324
LP P ++ ++ H+L W P E+ Y VE Q Y W P CS T
Sbjct: 30 LPAPQNLSVQSTNMKHLLMWNPVTQPGETVLYCVEYQGEYESLYMSHIWIPSSQCSPTKS 89
Query: 325 LSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVH 495
L CD+T D+ + Y RV+A+ SQ S W++ F+ + LT + + H
Sbjct: 90 LECDVTD---DITATVPYNFRVKAMLGSQTSAWSNLEHPFNRNATVLTPPRMEVTEH 143
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,275,697
Number of extensions: 1098322
Number of successful extensions: 5237
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5177
Number of HSP's successfully gapped: 5
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004948
(976 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129938.2| PREDICTED: LOW QUALITY PROTEIN: interleukin-... 562 e-161
Alignment gi|XP_003361680.1| PREDICTED: hypothetical protein LOC100622546... 351 3e-97
Alignment gi|XP_003121227.1| PREDICTED: interleukin-22 receptor subunit a... 67 2e-11
Alignment gi|XP_003358614.1| PREDICTED: interleukin-20 receptor subunit b... 57 1e-08
Alignment gi|XP_003360894.1| PREDICTED: interleukin-22 receptor subunit a... 56 3e-08
>ref|XP_003129938.2| PREDICTED: LOW QUALITY PROTEIN: interleukin-10 receptor subunit
alpha [Sus scrofa].
Length = 563
Score = 562 bits (1449), Expect = e-161
Identities = 276/297 (92%), Positives = 276/297 (92%), Gaps = 2/297 (0%)
Frame = +1
Query: 91 MLPLLVVPLAMFLCLLLGSCAH--ELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVE 264
MLPLLVVPLAMFLCLLLGSCAH ELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVE
Sbjct: 1 MLPLLVVPLAMFLCLLLGSCAHGTELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVE 60
Query: 265 LQRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRF 444
LQRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRF
Sbjct: 61 LQRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRF 120
Query: 445 SVDEVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPY 624
SVDEVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPY
Sbjct: 121 SVDEVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPY 180
Query: 625 KFKEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQYFTVTNLSIF 804
KFKEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQYFTVTNLSIF
Sbjct: 181 KFKEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQYFTVTNLSIF 240
Query: 805 FTFVXXXXXXXXXXXXXXXXVRRRGKLPTVLVFNDPSPFSLNGRAAPSETXDIIHPL 975
FTFV VRRRGKLPTVLVFNDPSPFSL GR APSET DIIHPL
Sbjct: 241 FTFVLLLYGALAYCLALQLYVRRRGKLPTVLVFNDPSPFSLTGRLAPSETQDIIHPL 297
>ref|XP_003361680.1| PREDICTED: hypothetical protein LOC100622546, partial [Sus scrofa].
Length = 707
Score = 351 bits (901), Expect = 3e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Frame = +1
Query: 274 YGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVD 453
YGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVD
Sbjct: 446 YGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVD 505
Query: 454 EVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPYKFK 633
EVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPYKFK
Sbjct: 506 EVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPYKFK 565
Query: 634 EKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQY 777
EKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQY
Sbjct: 566 EKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQY 613
>ref|XP_003121227.1| PREDICTED: interleukin-22 receptor subunit alpha-2-like [Sus
scrofa].
Length = 231
Score = 66.6 bits (161), Expect = 2e-11
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Frame = +1
Query: 151 AHELPKPPSVWFEAEFFHHVLHWTPSPN-QSESTYYEVELQRYGDKPWKPIPHCSQTLML 327
A++ KP V F++ FH++LHW P S S+ Y V+ + YG++ WK +C
Sbjct: 25 AYKSLKPQRVHFQSRNFHNILHWQPGGACTSNSSIYFVQYKMYGERQWKNKENCWGIQEF 84
Query: 328 SCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVHNGII 507
CDLT ET D++ Y RVR HS WT + E + ++ + NG +
Sbjct: 85 FCDLTNETSDIWEP--YYGRVRTSLAGMHSGWTMTRRFTPWWETKIDPPTMNITQVNGSL 142
Query: 508 LGTIKPPR 531
+ + P+
Sbjct: 143 VVILHAPK 150
>ref|XP_003358614.1| PREDICTED: interleukin-20 receptor subunit beta-like [Sus scrofa].
Length = 304
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Frame = +1
Query: 118 AMFLCLLLGSCAHELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVELQ-----RYGD 282
A+ CLL A LP P ++ ++ HVL W+P E YY VE Q Y
Sbjct: 16 ALIPCLLTDGVA-VLPAPQNISVQSTNMKHVLTWSPVMVPEEIVYYSVEYQGEYESLYMS 74
Query: 283 KPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVT 462
W P CS T L CD+T D+ + Y RVRA SQ S W++ F+ + T
Sbjct: 75 HIWIPSNWCSPTTGLECDITD---DITATVPYNLRVRATLGSQTSAWSTLKHPFNRNSTT 131
Query: 463 L 465
L
Sbjct: 132 L 132
>ref|XP_003360894.1| PREDICTED: interleukin-22 receptor subunit alpha-1 [Sus scrofa].
Length = 580
Score = 56.2 bits (134), Expect = 3e-08
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 5/153 (3%)
Frame = +1
Query: 133 LLLGSCAHELPKPPS-----VWFEAEFFHHVLHWTPSPNQSESTYYEVELQRYGDKPWKP 297
L +G+ +P+ S V F++ F ++L W P+ S T Y V+ + YG++ W
Sbjct: 8 LPVGALQAHIPEDTSDLLQYVKFQSSNFENILTWDSRPDSSPDTIYSVQYKTYGEREWLA 67
Query: 298 IPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDS 477
C + SC+LT+ET +L + Y ARV A+D S T RFS + T+
Sbjct: 68 KEGCQRITRKSCNLTLETGNL--TELYYARVTAIDPGGRSA-TKMTDRFSSLQHTI---- 120
Query: 478 VTLEVHNGIILGTIKPPRPKIAPAGDTYETIFH 576
IKPP P + + I H
Sbjct: 121 -------------IKPPDVTCIPKVRSIQMIVH 140
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,628,882
Number of extensions: 864525
Number of successful extensions: 4327
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4291
Number of HSP's successfully gapped: 5
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004948
(976 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895030.2| Sus scrofa unplaced genomic scaffold ChrUScaf2914 371 e-100
Sscrofa_Chr09 363 1e-97
>gb|GL895030.2| Sus scrofa unplaced genomic scaffold ChrUScaf2914
Length = 100881
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 271 aggtatggagataagccctggaagcccatcccccattgtagccagaccctaatgctgtcc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45975 aggtatggagataagccctggaagcccatcccccattgtagccagaccctaatgctgtcc 45916
Query: 331 tgtgatctcaccatggagaccctggatctgtatcatagcaatggttaccgagccagagtc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45915 tgtgatctcaccatggagaccctggatctgtatcatagcaatggttaccgagccagagtc 45856
Query: 391 cgggccgtggacaaaagccagcactccaactggacctcttccaacacccgcttctctgtg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45855 cgggccgtggacaaaagccagcactccaactggacctcttccaacacccgcttctctgtg 45796
Query: 451 gatgaag 457
|||||||
Sbjct: 45795 gatgaag 45789
Score = 341 bits (172), Expect = 4e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 456 agtgactctgacggttgacagcgtgacgctcgaggtgcacaacggcatcatcctgggaac 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44314 agtgactctgacggttgacagcgtgacgctcgaggtgcacaacggcatcatcctgggaac 44255
Query: 516 gatcaagccccccaggcccaagattgcccccgcaggtgatacatatgagaccatcttcca 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44254 gatcaagccccccaggcccaagattgcccccgcaggtgatacatatgagaccatcttcca 44195
Query: 576 cgacttccgggagtatgagattgaggttcgcaaggtaccaggaccctataag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44194 cgacttccgggagtatgagattgaggttcgcaaggtaccaggaccctataag 44143
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 626 agttcaaagagaaggtacaacatgaaaacttcagcctccccatcctgagagggctgggag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43459 agttcaaagagaaggtacaacatgaaaacttcagcctccccatcctgagagggctgggag 43400
Query: 686 aattgtgtgtcagggtgaagccgtccatcatctcccgaacgaacaagaaggtctggtcca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43399 aattgtgtgtcagggtgaagccgtccatcatctcccgaacgaacaagaaggtctggtcca 43340
Query: 746 aggaggagtgcatcgtgctcgccccccagt 775
||||||||||||||||||||||||||||||
Sbjct: 43339 aggaggagtgcatcgtgctcgccccccagt 43310
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 157 gaactgcccaagcctccatctgtgtggtttgaagcagaatttttccaccacgtcctccat 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46842 gaactgcccaagcctccatctgtgtggtttgaagcagaatttttccaccacgtcctccat 46783
Query: 217 tggacacccagcccgaatcagtctgaaagtaccta 251
|||||||||||||||||||||||||||||||||||
Sbjct: 46782 tggacacccagcccgaatcagtctgaaagtaccta 46748
Score = 155 bits (78), Expect = 5e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 1 tttcagtctcagctcagcagagcagcggcaggaggcgcgcatcccggctccggcttctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47485 tttcagtctcagctcagcagagcagcggcaggaggcgcgcatcccggctccggcttctgc 47426
Query: 61 tcccgctccggaggatga 78
||||||||||||||||||
Sbjct: 47425 tcccgctccggaggatga 47408
>Sscrofa_Chr09
|| Length = 153670197
Score = 363 bits (183), Expect = 1e-97
Identities = 186/187 (99%)
Strand = Plus / Plus
Query: 271 aggtatggagataagccctggaagcccatcccccattgtagccagaccctaatgctgtcc 330
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 50367906 aggtatggagataagccctggaagcccatcccccactgtagccagaccctaatgctgtcc 50367965
Query: 331 tgtgatctcaccatggagaccctggatctgtatcatagcaatggttaccgagccagagtc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50367966 tgtgatctcaccatggagaccctggatctgtatcatagcaatggttaccgagccagagtc 50368025
Query: 391 cgggccgtggacaaaagccagcactccaactggacctcttccaacacccgcttctctgtg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50368026 cgggccgtggacaaaagccagcactccaactggacctcttccaacacccgcttctctgtg 50368085
Query: 451 gatgaag 457
|||||||
Sbjct: 50368086 gatgaag 50368092
Score = 341 bits (172), Expect = 4e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 456 agtgactctgacggttgacagcgtgacgctcgaggtgcacaacggcatcatcctgggaac 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50369253 agtgactctgacggttgacagcgtgacgctcgaggtgcacaacggcatcatcctgggaac 50369312
Query: 516 gatcaagccccccaggcccaagattgcccccgcaggtgatacatatgagaccatcttcca 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50369313 gatcaagccccccaggcccaagattgcccccgcaggtgatacatatgagaccatcttcca 50369372
Query: 576 cgacttccgggagtatgagattgaggttcgcaaggtaccaggaccctataag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50369373 cgacttccgggagtatgagattgaggttcgcaaggtaccaggaccctataag 50369424
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 1 tttcagtctcagctcagcagagcagcggcaggaggcgcgcatcccggctccggcttctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50364900 tttcagtctcagctcagcagagcagcggcaggaggcgcgcatcccggctccggcttctgc 50364959
Query: 61 tcccgctccggaggatgaggcgctctcaggatgctgccgctcctggtagtgccgctggcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50364960 tcccgctccggaggatgaggcgctctcaggatgctgccgctcctggtagtgccgctggcg 50365019
Query: 121 atgttcctgtgcctgcttctaggctcctgcgcgcacg 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 50365020 atgttcctgtgcctgcttctaggctcctgcgcgcacg 50365056
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 626 agttcaaagagaaggtacaacatgaaaacttcagcctccccatcctgagagggctgggag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50370039 agttcaaagagaaggtacaacatgaaaacttcagcctccccatcctgagagggctgggag 50370098
Query: 686 aattgtgtgtcagggtgaagccgtccatcatctcccgaacgaacaagaaggtctggtcca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50370099 aattgtgtgtcagggtgaagccgtccatcatctcccgaacgaacaagaaggtctggtcca 50370158
Query: 746 aggaggagtgcatcgtgctcgccccccagt 775
||||||||||||||||||||||||||||||
Sbjct: 50370159 aggaggagtgcatcgtgctcgccccccagt 50370188
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 776 atttcactgtgaccaacctcagcatcttcttcacctttgtcctgctgctgtacggagccc 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50372353 atttcactgtgaccaacctcagcatcttcttcacctttgtcctgctgctgtacggagccc 50372412
Query: 836 tggcctactgcctggccctccagctgtacgtgcggcgccgggggaagctgcccaccgtcc 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50372413 tggcctactgcctggccctccagctgtacgtgcggcgccgggggaagctgcccaccgtcc 50372472
Query: 896 tggt 899
||||
Sbjct: 50372473 tggt 50372476
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 157 gaactgcccaagcctccatctgtgtggtttgaagcagaatttttccaccacgtcctccat 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50367117 gaactgcccaagcctccatctgtgtggtttgaagcagaatttttccaccacgtcctccat 50367176
Query: 217 tggacacccagcccgaatcagtctgaaagtacctactatgaagtggagctccagaggta 275
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50367177 tggacacccagcccgaatcagtctgaaagtacctactatgaagtggagctccagaggta 50367235
Score = 121 bits (61), Expect = 8e-25
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 897 ggtcttcaacgatcccagtcccttcagcctcaacggccgggctgccccctcggagactca 956
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 50376415 ggtcttcaacgatcccagtcccttcagcctcaccggccggcttgccccctcggagactca 50376474
Query: 957 ngatatcatccacccc 972
|||||||||||||||
Sbjct: 50376475 ggatatcatccacccc 50376490
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,767,676
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 12
Length of query: 976
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 955
Effective length of database: 2,808,413,156
Effective search space: 2682034563980
Effective search space used: 2682034563980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)