Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004951
(1217 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193240.1| cyclin-L1 [Bos taurus]. 283 2e-76
Alignment gi|NP_001029822.2| cyclin L2 [Bos taurus]. 144 2e-34
Alignment gi|XP_002694177.1| PREDICTED: cyclin L2 [Bos taurus]. 144 2e-34
Alignment gi|XP_001789600.1| PREDICTED: cyclin L2 [Bos taurus]. 144 2e-34
>ref|NP_001193240.1| cyclin-L1 [Bos taurus].
Length = 526
Score = 283 bits (724), Expect = 2e-76
Identities = 152/247 (61%), Positives = 157/247 (63%)
Frame = +3
Query: 27 LVCLHTKLMVEIFFRNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 206
L C + +V+ + NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL
Sbjct: 212 LECERNQTLVQTAW-NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 270
Query: 207 FGXXXXXXXXXXXXXLRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALST 386
FG LRLYTRKKPNY ALQEAKLKAKGLNPDGTPALST
Sbjct: 271 FGTTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALST 330
Query: 387 LGGFSPVSKPSSPREVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGVXXXXXXXXXXX 566
LGGFSP SKPSSPREVKTEEKSPISVNVKT+KKEPEDRQQASKSPYNGV
Sbjct: 331 LGGFSPASKPSSPREVKTEEKSPISVNVKTIKKEPEDRQQASKSPYNGVRKDSKRSRNSR 390
Query: 567 XXXXXXXXXXXXXXXXXXXXHYNNXXXXXXXXXXXXXXXXXXXXXXXXXHHNHGSPHLKA 746
HYNN HHNHGSPHLKA
Sbjct: 391 SASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKA 450
Query: 747 KHTRDDL 767
KHTRDDL
Sbjct: 451 KHTRDDL 457
>ref|NP_001029822.2| cyclin L2 [Bos taurus].
Length = 520
Score = 144 bits (363), Expect = 2e-34
Identities = 80/155 (51%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Frame = +3
Query: 72 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGXXXXXXXXXXXXX 251
NYMNDSLRT+VFVRFQPE+IACACIYLAAR L+IPLP RPHWFLLFG
Sbjct: 220 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKI 279
Query: 252 LRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALSTLGGFSPVSKP-SSPR 428
L+LYTRKK + AL EAK +AKGL P T L + FSP KP SP+
Sbjct: 280 LQLYTRKKVDLTHLESEVEKRRHALDEAKAQAKGLLPGSTQVLDSASRFSPAPKPVESPK 339
Query: 429 EVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGV 533
E K + SP+SV T +K ++ + SP NG+
Sbjct: 340 EGKGNKPSPLSVK-NTKRKVEGVKKTKADSPVNGL 373
>ref|XP_002694177.1| PREDICTED: cyclin L2 [Bos taurus].
Length = 520
Score = 144 bits (363), Expect = 2e-34
Identities = 80/155 (51%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Frame = +3
Query: 72 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGXXXXXXXXXXXXX 251
NYMNDSLRT+VFVRFQPE+IACACIYLAAR L+IPLP RPHWFLLFG
Sbjct: 220 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKI 279
Query: 252 LRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALSTLGGFSPVSKP-SSPR 428
L+LYTRKK + AL EAK +AKGL P T L + FSP KP SP+
Sbjct: 280 LQLYTRKKVDLTHLESEVEKRRHALDEAKAQAKGLLPGSTQVLDSASRFSPAPKPVESPK 339
Query: 429 EVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGV 533
E K + SP+SV T +K ++ + SP NG+
Sbjct: 340 EGKGNKPSPLSVK-NTKRKVEGVKKTKADSPVNGL 373
>ref|XP_001789600.1| PREDICTED: cyclin L2 [Bos taurus].
Length = 520
Score = 144 bits (363), Expect = 2e-34
Identities = 80/155 (51%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Frame = +3
Query: 72 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGXXXXXXXXXXXXX 251
NYMNDSLRT+VFVRFQPE+IACACIYLAAR L+IPLP RPHWFLLFG
Sbjct: 220 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKI 279
Query: 252 LRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALSTLGGFSPVSKP-SSPR 428
L+LYTRKK + AL EAK +AKGL P T L + FSP KP SP+
Sbjct: 280 LQLYTRKKVDLTHLESEVEKRRHALDEAKAQAKGLLPGSTQVLDSASRFSPAPKPVESPK 339
Query: 429 EVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGV 533
E K + SP+SV T +K ++ + SP NG+
Sbjct: 340 EGKGNKPSPLSVK-NTKRKVEGVKKTKADSPVNGL 373
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,391,658
Number of extensions: 643839
Number of successful extensions: 2163
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2162
Number of HSP's successfully gapped: 4
Length of query: 405
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,207,134
Effective search space: 4262140200
Effective search space used: 4262140200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004951
(1217 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866577.1| PREDICTED: similar to cyclin L1 isoform 8 [Cani... 294 1e-79
Alignment gi|XP_542852.2| PREDICTED: similar to cyclin L1 isoform 1 [Cani... 281 9e-76
Alignment gi|XP_866590.1| PREDICTED: similar to cyclin L1 isoform 9 [Cani... 281 9e-76
Alignment gi|XP_866549.1| PREDICTED: similar to cyclin L1 isoform 6 [Cani... 281 9e-76
Alignment gi|XP_866564.1| PREDICTED: similar to cyclin L1 isoform 7 [Cani... 275 5e-74
Alignment gi|XP_848553.1| PREDICTED: similar to cyclin L2 isoform 1 isofo... 142 8e-34
Alignment gi|XP_856369.1| PREDICTED: similar to cyclin L2 isoform 1 isofo... 137 3e-32
>ref|XP_866577.1| PREDICTED: similar to cyclin L1 isoform 8 [Canis familiaris].
Length = 308
Score = 294 bits (752), Expect = 1e-79
Identities = 155/239 (64%), Positives = 156/239 (65%)
Frame = +3
Query: 51 MVEIFFRNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGXXXXXX 230
MVEIFFRNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFG
Sbjct: 1 MVEIFFRNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEI 60
Query: 231 XXXXXXXLRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALSTLGGFSPVS 410
LRLYTRKKPNY ALQEAKLKAKGLNPDGTPALSTLGGFSP S
Sbjct: 61 QEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPAS 120
Query: 411 KPSSPREVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGVXXXXXXXXXXXXXXXXXXX 590
KPSSPREVK EEKSP+SVNVKTVKKEPEDRQQASKSPYNGV
Sbjct: 121 KPSSPREVKAEEKSPVSVNVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSR 180
Query: 591 XXXXXXXXXXXXHYNNXXXXXXXXXXXXXXXXXXXXXXXXXHHNHGSPHLKAKHTRDDL 767
HYNN HHNHGSPHLKAKHTRDDL
Sbjct: 181 TRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDL 239
>ref|XP_542852.2| PREDICTED: similar to cyclin L1 isoform 1 [Canis familiaris].
Length = 457
Score = 281 bits (719), Expect = 9e-76
Identities = 151/247 (61%), Positives = 156/247 (63%)
Frame = +3
Query: 27 LVCLHTKLMVEIFFRNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 206
L C + +V+ + NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL
Sbjct: 143 LECERNQTLVQTAW-NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 201
Query: 207 FGXXXXXXXXXXXXXLRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALST 386
FG LRLYTRKKPNY ALQEAKLKAKGLNPDGTPALST
Sbjct: 202 FGTTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALST 261
Query: 387 LGGFSPVSKPSSPREVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGVXXXXXXXXXXX 566
LGGFSP SKPSSPREVK EEKSP+SVNVKTVKKEPEDRQQASKSPYNGV
Sbjct: 262 LGGFSPASKPSSPREVKAEEKSPVSVNVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSR 321
Query: 567 XXXXXXXXXXXXXXXXXXXXHYNNXXXXXXXXXXXXXXXXXXXXXXXXXHHNHGSPHLKA 746
HYNN HHNHGSPHLKA
Sbjct: 322 SASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKA 381
Query: 747 KHTRDDL 767
KHTRDDL
Sbjct: 382 KHTRDDL 388
>ref|XP_866590.1| PREDICTED: similar to cyclin L1 isoform 9 [Canis familiaris].
Length = 458
Score = 281 bits (719), Expect = 9e-76
Identities = 151/247 (61%), Positives = 156/247 (63%)
Frame = +3
Query: 27 LVCLHTKLMVEIFFRNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 206
L C + +V+ + NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL
Sbjct: 144 LECERNQTLVQTAW-NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 202
Query: 207 FGXXXXXXXXXXXXXLRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALST 386
FG LRLYTRKKPNY ALQEAKLKAKGLNPDGTPALST
Sbjct: 203 FGTTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALST 262
Query: 387 LGGFSPVSKPSSPREVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGVXXXXXXXXXXX 566
LGGFSP SKPSSPREVK EEKSP+SVNVKTVKKEPEDRQQASKSPYNGV
Sbjct: 263 LGGFSPASKPSSPREVKAEEKSPVSVNVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSR 322
Query: 567 XXXXXXXXXXXXXXXXXXXXHYNNXXXXXXXXXXXXXXXXXXXXXXXXXHHNHGSPHLKA 746
HYNN HHNHGSPHLKA
Sbjct: 323 SASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKA 382
Query: 747 KHTRDDL 767
KHTRDDL
Sbjct: 383 KHTRDDL 389
>ref|XP_866549.1| PREDICTED: similar to cyclin L1 isoform 6 [Canis familiaris].
Length = 320
Score = 281 bits (719), Expect = 9e-76
Identities = 151/247 (61%), Positives = 156/247 (63%)
Frame = +3
Query: 27 LVCLHTKLMVEIFFRNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 206
L C + +V+ + NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL
Sbjct: 6 LECERNQTLVQTAW-NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 64
Query: 207 FGXXXXXXXXXXXXXLRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALST 386
FG LRLYTRKKPNY ALQEAKLKAKGLNPDGTPALST
Sbjct: 65 FGTTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALST 124
Query: 387 LGGFSPVSKPSSPREVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGVXXXXXXXXXXX 566
LGGFSP SKPSSPREVK EEKSP+SVNVKTVKKEPEDRQQASKSPYNGV
Sbjct: 125 LGGFSPASKPSSPREVKAEEKSPVSVNVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSR 184
Query: 567 XXXXXXXXXXXXXXXXXXXXHYNNXXXXXXXXXXXXXXXXXXXXXXXXXHHNHGSPHLKA 746
HYNN HHNHGSPHLKA
Sbjct: 185 SASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKA 244
Query: 747 KHTRDDL 767
KHTRDDL
Sbjct: 245 KHTRDDL 251
>ref|XP_866564.1| PREDICTED: similar to cyclin L1 isoform 7 [Canis familiaris].
Length = 299
Score = 275 bits (704), Expect = 5e-74
Identities = 146/230 (63%), Positives = 147/230 (63%)
Frame = +3
Query: 78 MNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGXXXXXXXXXXXXXLR 257
MNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFG LR
Sbjct: 1 MNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIETLR 60
Query: 258 LYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALSTLGGFSPVSKPSSPREVK 437
LYTRKKPNY ALQEAKLKAKGLNPDGTPALSTLGGFSP SKPSSPREVK
Sbjct: 61 LYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALSTLGGFSPASKPSSPREVK 120
Query: 438 TEEKSPISVNVKTVKKEPEDRQQASKSPYNGVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 617
EEKSP+SVNVKTVKKEPEDRQQASKSPYNGV
Sbjct: 121 AEEKSPVSVNVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSASRSRSRTRSRSRSHT 180
Query: 618 XXXHYNNXXXXXXXXXXXXXXXXXXXXXXXXXHHNHGSPHLKAKHTRDDL 767
HYNN HHNHGSPHLKAKHTRDDL
Sbjct: 181 PRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDL 230
>ref|XP_848553.1| PREDICTED: similar to cyclin L2 isoform 1 isoform 3 [Canis
familiaris].
Length = 523
Score = 142 bits (357), Expect = 8e-34
Identities = 78/155 (50%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Frame = +3
Query: 72 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGXXXXXXXXXXXXX 251
NYMNDSLRT+VFVRFQPE+IACACIYLAAR L+IPLP RPHWFLLFG
Sbjct: 223 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKI 282
Query: 252 LRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALSTLGGFSPVSK-PSSPR 428
L+LYTRKK + A++EAK +A+GL P T AL GFSP K SP+
Sbjct: 283 LQLYTRKKVDLTHLESEVEKRRHAIEEAKAQARGLLPTSTQALDNASGFSPAPKLAESPK 342
Query: 429 EVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGV 533
E K + SP+SV +K ++ + SP NG+
Sbjct: 343 EGKGNKASPLSVR-NAKRKTDGVKKIKADSPVNGL 376
>ref|XP_856369.1| PREDICTED: similar to cyclin L2 isoform 1 isoform 4 [Canis
familiaris].
Length = 299
Score = 137 bits (344), Expect = 3e-32
Identities = 76/153 (49%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Frame = +3
Query: 78 MNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGXXXXXXXXXXXXXLR 257
MNDSLRT+VFVRFQPE+IACACIYLAAR L+IPLP RPHWFLLFG L+
Sbjct: 1 MNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKILQ 60
Query: 258 LYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALSTLGGFSPVSK-PSSPREV 434
LYTRKK + A++EAK +A+GL P T AL GFSP K SP+E
Sbjct: 61 LYTRKKVDLTHLESEVEKRRHAIEEAKAQARGLLPTSTQALDNASGFSPAPKLAESPKEG 120
Query: 435 KTEEKSPISVNVKTVKKEPEDRQQASKSPYNGV 533
K + SP+SV +K ++ + SP NG+
Sbjct: 121 KGNKASPLSVR-NAKRKTDGVKKIKADSPVNGL 152
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,804,771
Number of extensions: 662792
Number of successful extensions: 2202
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2196
Number of HSP's successfully gapped: 7
Length of query: 405
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 300
Effective length of database: 15,374,224
Effective search space: 4612267200
Effective search space used: 4612267200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004951
(1217 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064703.1| cyclin-L1 [Homo sapiens]. 281 9e-76
Alignment gi|NP_112199.2| cyclin-L2 isoform A [Homo sapiens]. 142 5e-34
>ref|NP_064703.1| cyclin-L1 [Homo sapiens].
Length = 526
Score = 281 bits (719), Expect = 9e-76
Identities = 151/247 (61%), Positives = 156/247 (63%)
Frame = +3
Query: 27 LVCLHTKLMVEIFFRNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 206
L C + +V+ + NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL
Sbjct: 212 LECERNQTLVQTAW-NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 270
Query: 207 FGXXXXXXXXXXXXXLRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALST 386
FG LRLYTRKKPNY ALQEAKLKAKGLNPDGTPALST
Sbjct: 271 FGTTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALST 330
Query: 387 LGGFSPVSKPSSPREVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGVXXXXXXXXXXX 566
LGGFSP SKPSSPREVK EEKSPIS+NVKTVKKEPEDRQQASKSPYNGV
Sbjct: 331 LGGFSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSR 390
Query: 567 XXXXXXXXXXXXXXXXXXXXHYNNXXXXXXXXXXXXXXXXXXXXXXXXXHHNHGSPHLKA 746
HYNN HHNHGSPHLKA
Sbjct: 391 SASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKA 450
Query: 747 KHTRDDL 767
KHTRDDL
Sbjct: 451 KHTRDDL 457
>ref|NP_112199.2| cyclin-L2 isoform A [Homo sapiens].
Length = 520
Score = 142 bits (359), Expect = 5e-34
Identities = 80/156 (51%), Positives = 97/156 (62%), Gaps = 2/156 (1%)
Frame = +3
Query: 72 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGXXXXXXXXXXXXX 251
NYMNDSLRT+VFVRFQPE+IACACIYLAAR L+IPLP RPHWFLLFG
Sbjct: 221 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKI 280
Query: 252 LRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALSTLGGFSPVSK-PSSPR 428
L+LY RKK + A++EAK +A+GL P GT L GFSP K SP+
Sbjct: 281 LQLYARKKVDLTHLEGEVEKRKHAIEEAKAQARGLLPGGTQVLDGTSGFSPAPKLVESPK 340
Query: 429 EVKTEEKSPISVNVKTVKKEPEDRQQA-SKSPYNGV 533
E K + SP+S VK K+ E ++A + SP NG+
Sbjct: 341 EGKGSKPSPLS--VKNTKRRLEGAKKAKADSPVNGL 374
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,313,134
Number of extensions: 660947
Number of successful extensions: 2087
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2085
Number of HSP's successfully gapped: 2
Length of query: 405
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,835,944
Effective search space: 4450783200
Effective search space used: 4450783200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004951
(1217 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064321.2| cyclin-L1 [Mus musculus]. 275 4e-74
Alignment gi|NP_997561.1| cyclin-L2 [Mus musculus]. 144 1e-34
>ref|NP_064321.2| cyclin-L1 [Mus musculus].
Length = 532
Score = 275 bits (704), Expect = 4e-74
Identities = 148/247 (59%), Positives = 155/247 (62%)
Frame = +3
Query: 27 LVCLHTKLMVEIFFRNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 206
L C + +V+ + NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL
Sbjct: 218 LECERNQTLVQTAW-NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 276
Query: 207 FGXXXXXXXXXXXXXLRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALST 386
FG LRLYTRKKPNY ALQEAKLKAKGLN DGTPALST
Sbjct: 277 FGTTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNLDGTPALST 336
Query: 387 LGGFSPVSKPSSPREVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGVXXXXXXXXXXX 566
LGGFSP SKPSSPREVK EEKSP+S+NVKTVKKEPEDRQQASKSPYNGV
Sbjct: 337 LGGFSPASKPSSPREVKAEEKSPVSINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRTSR 396
Query: 567 XXXXXXXXXXXXXXXXXXXXHYNNXXXXXXXXXXXXXXXXXXXXXXXXXHHNHGSPHLKA 746
HYNN HHNHGSPHLKA
Sbjct: 397 SASRSRSRTRSRSRSHSPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKA 456
Query: 747 KHTRDDL 767
KHTR+DL
Sbjct: 457 KHTREDL 463
>ref|NP_997561.1| cyclin-L2 [Mus musculus].
Length = 518
Score = 144 bits (364), Expect = 1e-34
Identities = 80/155 (51%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Frame = +3
Query: 72 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGXXXXXXXXXXXXX 251
NYMNDSLRT+VFVRFQPE+IACACIYLAAR L+IPLP RPHWFLLFG
Sbjct: 219 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICFKI 278
Query: 252 LRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALSTLGGFSPVSKPSSPRE 431
L+LYTRKK + A++EAK +AKGL P P L + GFSP K SP+E
Sbjct: 279 LQLYTRKKVDLTHLESEVEKRKHAIEEAKARAKGLLPGTAPGLDSAAGFSPAPKLESPKE 338
Query: 432 VKTEEKSPISVNVKTVKKEPEDRQQA-SKSPYNGV 533
K + SP S K+ K++ E ++A SP NG+
Sbjct: 339 GKGGKPSPPS--GKSAKRKMEGPKKAQGHSPVNGL 371
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,762,036
Number of extensions: 570278
Number of successful extensions: 1768
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1767
Number of HSP's successfully gapped: 2
Length of query: 405
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 301
Effective length of database: 12,493,815
Effective search space: 3760638315
Effective search space used: 3760638315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004951
(1217 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358677.1| PREDICTED: cyclin-L1 [Sus scrofa]. 283 1e-76
>ref|XP_003358677.1| PREDICTED: cyclin-L1 [Sus scrofa].
Length = 526
Score = 283 bits (725), Expect = 1e-76
Identities = 153/247 (61%), Positives = 157/247 (63%)
Frame = +3
Query: 27 LVCLHTKLMVEIFFRNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 206
L C + +V+ + NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL
Sbjct: 212 LECERNQTLVQTAW-NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLL 270
Query: 207 FGXXXXXXXXXXXXXLRLYTRKKPNYXXXXXXXXXXXXALQEAKLKAKGLNPDGTPALST 386
FG LRLYTRKKPNY ALQEAKLKAKGLNPDGTPALST
Sbjct: 271 FGTTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALST 330
Query: 387 LGGFSPVSKPSSPREVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGVXXXXXXXXXXX 566
LGGFSP SKPSSPREVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGV
Sbjct: 331 LGGFSPASKPSSPREVKTEEKSPISVNVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSR 390
Query: 567 XXXXXXXXXXXXXXXXXXXXHYNNXXXXXXXXXXXXXXXXXXXXXXXXXHHNHGSPHLKA 746
HYNN HHNHGSPHLKA
Sbjct: 391 SASRSRSRTRSRSRSHTPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKA 450
Query: 747 KHTRDDL 767
KHTRDDL
Sbjct: 451 KHTRDDL 457
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,093,029
Number of extensions: 406602
Number of successful extensions: 1259
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1258
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,829,335
Effective search space: 2684117840
Effective search space used: 2684117840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004951
(1217 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1007 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1007 bits (508), Expect = 0.0
Identities = 511/512 (99%)
Strand = Plus / Minus
Query: 629 ttataataataggcggagtcgatctggaacatacagctcgagatcaagaagcaggtcccg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105145562 ttataataataggcggagtcgatctggaacatacagctcgagatcaagaagcaggtcccg 105145503
Query: 689 cagtcacagtgaaagcccaagaagacatcataatcatggttctccacaccttaaagccaa 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105145502 cagtcacagtgaaagcccaagaagacatcataatcatggttctccacaccttaaagccaa 105145443
Query: 749 gcataccagagatgatttaaaaagttcaaatagacatggtcacaaaaggaaaaaatctcg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105145442 gcataccagagatgatttaaaaagttcaaatagacatggtcacaaaaggaaaaaatctcg 105145383
Query: 809 ttctcgatctcagagcaagtctcgggatcactcagatgctgccaagaaacacaggcatga 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105145382 ttctcgatctcagagcaagtctcgggatcactcagatgctgccaagaaacacaggcatga 105145323
Query: 869 aaggggacatcatagggacaggcgtgaaagatctcgctcctttgagaggtcccataaagg 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105145322 aaggggacatcatagggacaggcgtgaaagatctcgctcctttgagaggtcccataaagg 105145263
Query: 929 caagcaccatggtagcagtcgctcaggacatggcagacacaggcgctgactttcttcctt 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105145262 caagcaccatggtagcagtcgctcaggacatggcagacacaggcgctgactttcttcctt 105145203
Query: 989 tgagcctgcatcaactcctcattttgcctatctacagtgtgatgtatggactcataattg 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105145202 tgagcctgcatcaactcctcattttgcctatctacagtgtgatgtatggactcataattg 105145143
Query: 1049 aaacattaaaagcaaattgattaggatttgatttcttaaaaccctcttaagtctctagaa 1108
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 105145142 aaacattaaaagcaaattgattaggatttgatttcttaaaaccctcttaggtctctagaa 105145083
Query: 1109 atactgaggacattttcttttgaaaagaactg 1140
||||||||||||||||||||||||||||||||
Sbjct: 105145082 atactgaggacattttcttttgaaaagaactg 105145051
Score = 337 bits (170), Expect = 9e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 1 tctccaattttatgtaagcttcagaactggtttgtttacatacaaagcttatggttgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105151079 tctccaattttatgtaagcttcagaactggtttgtttacatacaaagcttatggttgaaa 105151020
Query: 61 tatttttcaggaattatatgaatgacagtcttcgaaccaatgtatttgttcgatttcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105151019 tatttttcaggaattatatgaatgacagtcttcgaaccaatgtatttgttcgatttcaac 105150960
Query: 121 cagagactatagcgtgtgcgtgcatctaccttgcagctagagctcttcag 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105150959 cagagactatagcgtgtgcgtgcatctaccttgcagctagagctcttcag 105150910
Score = 278 bits (140), Expect = 7e-72
Identities = 143/144 (99%)
Strand = Plus / Minus
Query: 274 agccaaattatgaattgctggagaaagaagtagagaaaagaaaagtagccttacaagaag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105150591 agccaaattatgaattgctggagaaagaagtagagaaaagaaaagtagccttacaagaag 105150532
Query: 334 ccaaattaaaagcaaagggattgaatcctgatggaactccagccctttcaactctcggtg 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105150531 ccaaattaaaagcaaagggattgaatcctgatggaactccagccctttcaactctcggtg 105150472
Query: 394 gattttctccagtctctaaaccat 417
|||||||||||| |||||||||||
Sbjct: 105150471 gattttctccagcctctaaaccat 105150448
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 169 agattccattgccaactcgtccccattggtttcttctctttggtacaacagaagaggaga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105150787 agattccattgccaactcgtccccattggtttcttctctttggtacaacagaagaggaga 105150728
Query: 229 tccaggaaatctgcatagaaacacttaggctttacaccagaaaaaag 275
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105150727 tccaggaaatctgcatagaaacacttaggctttacaccagaaaaaag 105150681
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 529 gtgtaagaaaagacagcaagagaagtagaaatagccgaagtgcaagtcgatcaaggtcaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56993109 gtgtaagaaaagacagcaagagaagtagaaatagccgaagtgcaagtcgatcaaggtcaa 56993050
Query: 589 gaacacgatcacgttctagatcacacactccaagaagaca 628
||||||||||||||||||||||||||||||||||||||||
Sbjct: 56993049 gaacacgatcacgttctagatcacacactccaagaagaca 56993010
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 529 gtgtaagaaaagacagcaagagaagtagaaatagccgaagtgcaagtcgatcaaggtcaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105146310 gtgtaagaaaagacagcaagagaagtagaaatagccgaagtgcaagtcgatcaaggtcaa 105146251
Query: 589 gaacacgatcacgttctagatcacacactccaagaagaca 628
||||||||||||||||||||||||||||||||||||||||
Sbjct: 105146250 gaacacgatcacgttctagatcacacactccaagaagaca 105146211
Score = 180 bits (91), Expect = 1e-42
Identities = 105/112 (93%)
Strand = Plus / Minus
Query: 418 catcacccagagaagtaaaaactgaagagaagtctccgatctccgttaatgtgaagacag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105150208 catcacccagagaagtaaaaactgaagagaagtctccgatctccgttaatgtgaagacag 105150149
Query: 478 tnnnnnnngaacctgaggatagacaacaggcttccaaaagcccttataatgg 529
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105150148 taaaaaaagaacctgaggatagacaacaggcttccaaaagcccttataatgg 105150097
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 1171 gcacattaaaaatgccctagcagtatctaattgaaaaaaccatggtc 1217
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105145020 gcacattaaaaatgccctagcagtatctaattgaaaaaaccatggtc 105144974
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,128,268
Number of extensions: 346
Number of successful extensions: 346
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 8
Length of query: 1217
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1196
Effective length of database: 2,808,413,156
Effective search space: 3358862134576
Effective search space used: 3358862134576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)